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Two species of the squat lobster family Munidopsidae, Munidopsis albatrossae Pequegnat & Pequegnat, 1973 and M. pycnopoda Baba, 2005, are reported from Taiwan for the first time based on specimens collected from lower bathyal depths. The Taiwanese material of M. pycnopoda also represents the first record of the species from the Pacific Ocean and greatly extends this species’ geographical range from the western Indian Ocean to western Pacific. The giant Munidopsis specimen from Taiwan is identified as M. albatrossae mainly by DNA barcoding even though M. albatrossae and M. aries (A. Milne-Edwards, 1880) are both morphologically and genetically extremely similar.

Although a recent comprehensive molecular phylogenetic study on Penaeus Fabricius, 1798 reinstated a single genus for these economically important shrimps, several clades in the molecular phylogenetic tree do not have formal names. Subgeneric names are given herein to five of these clades if Penaeus is to be split. A key to the subgenera in Penaeus is also provided.

Cryptic biological invasions are largely unrecognised, leading to an underestimation of the number of invading taxa and their potential impacts. The Chinese mitten crab, Eriocheir sinensis, is a highly invasive species with serious economic and ecological impacts in Europe. Recently, mitochondrial DNA (mtDNA) of the Japanese mitten crab, E. japonica, has been discovered in populations from The Netherlands, Poland and Germany, but the taxonomic status and time of introduction of specimens carrying this mtDNA are uncertain. To this end, we investigated the morphology and variation of the mitochondrial cytochrome c oxidase subunit I (COI) gene of mitten crabs collected in central-western Europe between 1998 and 2020. Mitten crabs from Belgium harboured a Japanese mitten crab COI haplotype in 33% to 65% of individuals, even in our earliest samples from 1998. All other studied populations carried only Chinese mitten crab COI haplotypes. Morphologically, many of the juvenile Belgian mitten crabs showed intermediate traits between the two species, while all investigated adult mitten crabs, regardless of their mitochondrial haplotype or country of origin, were morphologically assigned to E. sinensis. This intermediate morphology of the juveniles and genetic-morphological discrepancy of adults suggests that Japanese mitten crabs introgressed with Chinese mitten crabs, which could have happened both before and after the introduction of mitten crabs to Europe. A specific Chinese mitten crab COI haplotype, found in Belgium, was previously only known from Vladivostok (Russia), where Chinese and Japanese mitten crab hybrids naturally occur. This Far East region is, therefore, a plausible source for at least part of the mitten crab mitochondrial diversity in Belgium.

Abstract The food webs of shallow-water hydrothermal vents are supported by chemosynthetic and photosynthetic autotrophs. However, the relative importance of these two basal resources for benthic consumers and its changes along the physicochemical gradient caused by vent plumes are unknown. We used stable carbon and nitrogen isotopes (i.e., δ13C and δ15N) and Bayesian mixing models to quantify the dietary contribution of basal resources to the benthic fauna at the shallow-water vents around Kueishan Island, Taiwan. Our results indicated that the food chains and consumer production at the shallow-water vents were mainly driven by photoautotrophs (total algal contribution: 26–54%) and zooplankton (19–34%) rather than by chemosynthetic production (total contribution: 14–26%). Intraspecific differences in the trophic support and isotopic niche of the benthic consumers along the physicochemical gradient were also evident. For instance, sea anemone Anthopleura sp. exhibited the greatest reliance on chemosynthetic bacteria (26%) and photoautotrophs (66%) near the vent openings, but zooplankton was its main diet in regions 150–300 m (32–49%) and 300–700 m (32–78%) away from the vent mouths. The vent-induced physicochemical gradient structures not only the community but also the trophic support and isotopic niche of vent consumers.

Spiny lobsters of the family Palinuridae Latreille, 1802 are known to be industrial crustaceans in the global fishing market amongst other crustacean marine species. Panulirus femoristriga has been reported in the Maldives, Japan, Taiwan, Vietnam, the Philippines, Indonesia (Ambon, Irian Jaya, Celebes Island, Seram Island), the Polynesian Islands, Solomon Islands, New Hebrides, Wallis and Futuna and off the coast of northern Australia, but there is uncertainty about their distributions due to the morphological similarity with Panulirus femoristriga, Panulirus longipes bispinosus and Panulirus brunneiflagellum. However, the identification on P. femoristiga can only be confirmed if the morphological descriptions are mentioned in literature.A specimen of the spiny lobster Panulirus femoristriga Von Martens, 1872 was discovered in Semporna, located on the west coast of Sabah State, Malaysia Borneo. While the status of P. femoristriga has been classified as "least concern" on the International Union for Conservation of Nature Red List, studies on the species' population size, habitat and distribution are still inadequate. This study adopted both morphological and molecular approaches for species delimitation.The phylogenetic position of the Sabah P. femoristriga was revealed by the mitochondrial cytochrome c oxidase gene (COI) marker. This represents the first record of the species in the coastal waters of Sabah, despite its wide geographical distribution in the Indo-West Pacific. A revision on the species global distribution was also conducted by harvesting all literature with species named Panulirus longipes femoristriga and Panulirus femoristriga which were available online including those prior to year 2001 before the presence of P. femoristriga is confirmed. Due to the uncertainties on the morphological distribution in previous literature, further studies are required to fill in the missing data for confirmation.

The leucosiid crab Orientotlos iishibai Sakai, 1980 was described from one female collected off western Japan and had never been reported since. The species is now recorded from southwestern Taiwan for the first time, and is redescribed and figured at length. Although Sakai argued that Orientotlos Sakai, 1980, is closely related to Oreophorus Rüppell, 1830 and Atlantotlos Doflein, 1904, the genus is actually morphologically most similar to Merocryptus A. Milne-Edwards, 1873. The two genera, however, still differ markedly in a number of key carapace and cheliped characters.

The larvae of the deep-sea pandalid shrimp Heterocarpus fascirostratus Yang, Chan & Kumar, 2018 were successfully hatched and cultured to the third zoeal stage. The larvae reached the third zoeal stage nine days after hatching at a water temperature of 21 ± 1 °C. Although members of Heterocarpus A. Milne-Edwards, 1881 have rather diverse body forms and are often separated into many species groups, the early zoeal morphology of H. fascirostratus follows the general developmental pattern of the species in Heterocarpus. The main differences amongst these larvae are body size, spines on the anteroventral margin of the carapace, and the endopod setation of the third maxilliped.

Brachyurans, or crabs, are of commercial and ecological importance, but limited genomic resources exist. Here the authors present a chromosome-level genome and expression data for the Chinese mitten crab, to shed light on the biology of this group.

Nephropsis stewarti Wood-Mason, 1872 is the most common species of the deep-sea clawed lobster genus Nephropsis Wood-Mason, 1872 in the Indo-West Pacific. Morphological comparisons and genetic analyses of extensive material referred to this lobster revealed the presence of three species. The three species differ mainly in body size, development of the intermediate carina on the carapace, position of the lateral pair of rostral teeth, whether the pleonal tergum is granulate, and the spination on the large chelipeds. Nephropsis stewarti is restricted to the western central Indian Ocean, and a neotype is selected to fix its identity. The name Nephropsis grandis Zarenkov, 2006 is revived with neotype selection for the large form found in the West Pacific and northwestern Australia. The smaller form from southern Taiwan and the Philippines is described as Nephropsis pygmaea sp. nov.

Squat lobster specimens belonging to the family Munididae were recently collected along the southwestern coast of the mainland of India and in the Andaman Islands. The specimens belong to two known species, Agononida prolixa (Alcock, 1894) and Munida compacta Macpherson, 1997, and a new species, Paramunida bineeshi sp. nov. We here redescribe A. prolixa and describe and figure the new species. Munida compacta is newly recorded from India, and we figure the live coloration. In addition, molecular and phylogenetic analyses of two mitochondrial markers (16S rRNA and COI) revealed the phylogenetic relationships of M. compacta and P. bineeshi sp. nov. with their most closely related congeners. The genetic similarity among the individuals of M. compacta from different locations is also addressed.

Imagery has become a key tool for assessing deep-sea megafaunal biodiversity, historically based on physical sampling using fishing gears. Image datasets provide quantitative and repeatable estimates, small-scale spatial patterns and habitat descriptions. However, taxon identification from images is challenging and often relies on morphotypes without considering a taxonomic framework. Taxon identification is particularly challenging in regions where the fauna is poorly known and/or highly diverse. Furthermore, the efficiency of imagery and physical sampling may vary among habitat types. Here, we compared biodiversity metrics (alpha and gamma diversity, composition) based on physical sampling (dredging and trawling) and towed-camera still images (1) along the upper continental slope of Papua New Guinea (sedimented slope with wood-falls, a canyon and cold seeps), and (2) on the outer slopes of the volcanic islands of Mayotte, dominated by hard bottoms. The comparison was done on selected taxa (Pisces, Crustacea, Echinoidea, and Asteroidea), which are good candidates for identification from images. Taxonomic identification ranks obtained for the images varied among these taxa (e.g., family/order for fishes, genus for echinoderms). At these ranks, imagery provided a higher taxonomic richness for hard-bottom and complex habitats, partially explained by the poor performance of trawling on these rough substrates. For the same reason, the gamma diversity of Pisces and Crustacea was also higher from images, but no difference was observed for echinoderms. On soft bottoms, physical sampling provided higher alpha and gamma diversity for fishes and crustaceans, but these differences tended to decrease for crustaceans identified to the species/morphospecies level from images. Physical sampling and imagery were selective against some taxa (e.g., according to size or behavior), therefore providing different facets of biodiversity. In addition, specimens collected at a larger scale facilitated megafauna identification from images. Based on this complementary approach, we propose a robust methodology for image-based faunal identification relying on a taxonomic framework, from collaborative work with taxonomists. An original outcome of this collaborative work is the creation of identification keys dedicated specifically to in situ images and which take into account the state of the taxonomic knowledge for the explored sites.

Abstract The emergence of cost-effective and rapid sequencing approaches has resulted in an exponential rise in the number of mitogenomes on public databases in recent years, providing greater opportunity for undertaking large-scale comparative genomic and systematic research. Nonetheless, current datasets predominately come from small and disconnected studies on a limited number of related species, introducing sampling biases and impeding research of broad taxonomic relevance. This study contributes 21 crustacean mitogenomes from several under-represented decapod infraorders including Polychelida and Stenopodidea, which are used in combination with 225 mitogenomes available on NCBI to investigate decapod mitogenome diversity and phylogeny. An overview of mitochondrial gene orders (MGOs) reveals a high level of genomic variability within the Decapoda, with a large number of MGOs deviating from the ancestral arthropod ground pattern and unevenly distributed among infraorders. Despite the substantial morphological and ecological variation among decapods, there was limited evidence for correlations between gene rearrangement events and species ecology or lineage specific nucleotide substitution rates. Within a phylogenetic context, predicted scenarios of rearrangements show some MGOs to be informative synapomorphies for some taxonomic groups providing strong independent support for phylogenetic relationships. Additional comparisons for a range of mitogenomic features including nucleotide composition, strand asymmetry, unassigned regions and codon usage indicate several clade-specific trends that are of evolutionary and ecological interest.

A new caridean shrimp family, Chlorotocellidae, is established to accommodate four genera previously assigned to Pandalidae, viz., Chlorotocella Balss, 1914 (type genus), Chlorocurtis Kemp, 1925, Anachlorocurtis Hayashi, 1975, and Miropandalus Bruce, 1983, which represents the sister clade to a clade consisting of all other pandalid genera (including the two genera previously assigned to Thalassocarididae) in a recent comprehensive phylogenetic analysis of Pandaloidea. Diagnoses are provided for the new family and its constituent genera, and a comparison with Pandalidae is provided, for which a new diagnosis is given.

The deep-sea Benthesicymus shrimps generally inhabit waters deeper than 1000 m deep. Recent deep-sea cruises off Taiwan collected two species of Benthesicymus Bate, 1881 from the abyssal depths greater than 3,000 m. They are B. crenatus Bate, 1881 and B. laciniatus Rathbun, 1906. Both of them are new records for Taiwan, with B. crenatus also representing the deepest (5,314 m) marine animal so far known for the island. The major distinguishing characters of these two species are described and illustrated.

Recent deep-sea cruises using Taiwanese research vessels off Taiwan and in the South China Sea yielded seven species of the clawed lobster genus Nephropsis Wood-Mason, 1872. Four species are new records for Taiwan (Nephropsis acanthura Macpherson, 1990, N. holthuisi Macpherson, 1993, N. serrata Macpherson, 1993, and N. suhmi Bate, 1888) and three species are new records of Dongsha (under the jurisdiction of Taiwan) in the South China Sea (N. ensirostris Alcock, 1901, N. stewarti Wood-Mason, 1872, and N. suhmi). Altogether, five and four species of this genus are now known from Taiwan and Dongsha, respectively. The diagnostic characters and coloration are illustrated for most, if not all, of these species.

Sepioteuthis lessoniana is a widely distributed neritic squid in the Indo-Pacific Ocean. It is an important species in fisheries, but species management is difficult because of inadequate information regarding its life history. The daily growth and δ18O values from the core to the edge of statoliths of S. lessoniana collected in northern Taiwan were analyzed to predict the experienced temperature history along with ontogenetic stages. The probability of occurrence in a given area at each life stage in three seasonal groups was determined using salinity values, deduced and measured temperatures, and the known ecology of S. lessoniana. The results showed that ontogenetic variation in the statolith δ18O values in S. lessoniana reflected the seasonal temperature fluctuation observed in Taiwanese waters, which indicated the reliability of the prediction method. Complex and diverse distribution and movement patterns were observed in the three seasonal groups. The results also indicated the importance of the waters near the coast of northeastern Taiwan as a spawning ground. Based on a model prediction, the distribution of S. lessoniana is likely associated with water temperature and current. A potential migration route from the Penghu Islands to northeastern Taiwan suggests a high level of population connectivity in S. lessoniana in Taiwan. This study provides information on the spatial and vertical distribution of S. lessoniana at various ontogenetic stages, which is essential for resource management and conservation of this commercial species.

Connectivity in deep-sea organisms must be considered across both depth gradient and horizontal geographical scales. The depth-differentiation hypothesis suggests that strong environmental gradients (e.g., light, temperature, pressure) and habitat heterogeneity in the deep-sea can create selection pressure, and this can result in genetic population divergence. The hydrothermal vent crab Xenograpsus testudinatus (Xenograpsidae) is common in vents at Kueishan Island, Taiwan, ranging from 10 to about 300 m depths. Xenograpsus testudinatus has also been found in shallow water vents (3–20 m) at Kagoshima and the Izu archipelago of Japan. We examine the sequence divergences in the mitochondrial COI, 16S rRNA and D-loop genes, to test the hypothesis that there is significant genetic differentiation among populations of X. testudinatus along the depth gradient at Kueishan Island (30, 200, 209–224 and 250–275 m), and among different geographical regions (Kueishan, Kagoshima and the Izu archipelago) in the West Pacific. There is neither significant population differentiation among shallow or deep-sea vents, nor between geographical locations. Vertical migration of zoea, upwelling on the eastern coast of Taiwan and the strong effect of the Kuroshio Currents has probably resulted in a high level of planktonic larval dispersal of X. testudinatus along the depth and geographical gradients in the Western Pacific.

The larvae of the deep-sea pandalid shrimp Plesionika grandis Doflein, 1902 were successfully reared in the laboratory for the first time. The larvae reached the eighth zoeal stage in 36 days, both of which are longest records for the genus. Early larval stages of P. grandis bear the general characters of pandalid shrimps and differ from the other two species of Plesionika with larval morphology known in the number of spines on the anteroventral margin of carapace, number of tubercles on antennule, endopod segmentation in antenna, and third maxilliped setation. Although members in Plesionika are often separated into species groups, members of the same species group do not necessarily have similar early larval morphology. Since the zoea VIII of P. grandis still lacks pleopods and fifth pereiopod, this shrimp likely has at least 12 zoeal stages and a larval development of 120 days.

The commercial deep-sea caridean shrimp Heterocarpus gibbosus Spence Bate, 1888 has long been recorded from India and constitutes an important part of the catches in the context of the further development of deep-sea fisheries in India. A recent survey in some deep-sea fishing ports in southern India, however, revealed that all material previously reported as “H. gibbosus” is actually a misidentification of its closely related species H. chani Li, 2006, which has only recently been reported from India. More detailed comparisons allowed the discovery of more distinctive characters between H. chani and H. gibbosus.

In this study, the complete mitochondrial genome (mitogenome) sequence of Latreillia valida was determined. The circle genome was 15,097 bp in length and contains 13 protein-coding genes (PCGs), 22 transfer (tRNA) genes, 2 ribosomal (rRNA) genes, and 1 control region. The overall nucleotide composition of this mitogenome was 38.6% for A, 16.0% for C, 9.8% for G, and 35.6% for T and showed 87% identity to Moloha majora. Phylogenetic analysis showed that L. valida was clustered with Homolidae family, suggesting that Latreilliidae and Homolidae had a close relationship.

Several shrimp species from the clade Penaeidae are farmed industrially for human consumption, and this farming has turned shrimp into the largest seafood commodity in the world. The species that are in demand for farming are an anomaly within their clade because they grow to much larger sizes than other members of Penaeidae. Here we trace the evolutionary history of the anomalous farmed shrimp using combined data phylogenetic analysis of living and fossil species. We show that exquisitely preserved fossils of †Antrimpos speciosus from the Late Jurassic Solnhofen limestone belong to the same clade as the species that dominate modern farming, dating the origin of this clade to at least 145 mya. This finding contradicts a much younger Late Cretaceous age (ca. 95 mya) previously estimated for this clade using molecular clocks. The species in the farmed shrimp clade defy a widespread tendency, by reaching relatively large body sizes despite their warm water lifestyles. Small body sizes have been shown to be physiologically favored in warm aquatic environments because satisfying oxygen demands is difficult for large organisms breathing in warm water. Our analysis shows that large-bodied, farmed shrimp have more gills than their smaller-bodied shallow-water relatives, suggesting that extra gills may have been key to the clade's ability to meet oxygen demands at a large size. Our combined data phylogenetic tree also suggests that, during penaeid evolution, the adoption of mangrove forests as habitats for young shrimp occurred multiple times independently.

Hydrothermal vents represent a unique habitat in the marine ecosystem characterized with high water temperature and toxic acidic chemistry. Vents are distributed at depths ranging from a few meters to several thousand meters. The biological communities of shallow-water vents have, however, been insufficiently studied in most biogeographic areas. We attempted to characterize the macrofauna and macroflora community inhabiting the shallow-water vents off Kueishan Island, Taiwan, to identify the main abiotic factors shaping the community structure and the species distribution. We determined that positively buoyant vent fluid exhibits a more pronounced negative impact to species on the surface water than on the bottom layer. Species richness increased with horizontal distance from the vent, and continuing for a distance of 2000 m, indicating that the vent fluid may exert a negative impact over several kilometers. The community structure off Kueishan Island displayed numerous transitions along the horizontal gradient, which were broadly congruent with changes in environmental conditions. Combination of variation in Ca2+, Cl-, temperature, pH and depth were revealed to show the strongest correlation with the change in benthic community structure, suggesting multiple factors of vent fluid were influencing the associated fauna. Only the vent crabs of Kueishan Island may have an obligated relationship with vents and inhabit the vent mouths because other fauna found nearby are opportunistic taxa that are more tolerant to acidic and toxic environments.

Little is known of New Guinea's deep benthic communities. In fall 2010, the Muséum national d'Histoire naturelle, Institut de Recherche pour le Développement, and University of Papua New Guinea spearheaded an international three-leg cruise, BioPapua, aimed at exploring the deep waters of eastern Papua New Guinea and its satellite islands. Special attention was given to faunal assemblages associated with sunken wood and decomposing vegetation as well as seamount summits and slopes. In this article, we review the information available on the deep ecosystems of Papua New Guinea and summarize preliminary results of the BioPapua cruise.

Panulirus homarus is an economically important spiny lobster that is widespread through the Indo-West Pacific Region, but has an uncertain taxonomic status, with three or four geographic subspecies having been described. This study used mitochondrial (16S, COI and control region) and nuclear (18S, ITS-1) DNA sequences to examine specimens of all putative subspecies and forms from throughout their range, in order to determine their genetic validity, and understand the evolutionary history of this species. Despite the range of diversity present in the loci examined, the results were consistent across genes. P. h. rubellus from the SW Indian Ocean comprised the most divergent lineage that was reciprocally monophyletic with respect to all other P. homarus (approx. 9% divergence in COI), and has likely evolved reproductive barriers. The putative P. h. "Brown" subspecies from the Marquesas Is in the central Pacific also comprised a somewhat divergent monophyletic lineage (approx. 3% in COI), but may simply be an allopatric population. The widespread P. h. homarus was not diverged at all from the described P. h. megasculpta from the NW Indian Ocean. The degree of evolutionary divergence of populations at the extremes distribution of the species is somewhat surprising, given the long pelagic larval stage, but suggests that allopatric speciation has been an important driver in the evolution of the genus.