29 results on '"Timm, Sara"'
Search Results
2. The unremarkable alveolar epithelial glycocalyx: a thorium dioxide-based electron microscopic comparison after heparinase or pneumolysin treatment
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Timm, Sara, Lettau, Marie, Hegermann, Jan, Rocha, Maria Linda, Weidenfeld, Sarah, Fatykhova, Diana, Gutbier, Birgitt, Nouailles, Geraldine, Lopez-Rodriguez, Elena, Hocke, Andreas, Hippenstiel, Stefan, Witzenrath, Martin, Kuebler, Wolfgang M., and Ochs, Matthias
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- 2023
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3. Skeletal muscle provides the immunological micro-milieu for specific plasma cells in anti-synthetase syndrome-associated myositis
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Preuße, Corinna, Paesler, Barbara, Nelke, Christopher, Cengiz, Derya, Müntefering, Thomas, Roos, Andreas, Amelin, Damien, Allenbach, Yves, Uruha, Akinori, Dittmayer, Carsten, Hentschel, Andreas, Pawlitzki, Marc, Hoffmann, Sarah, Timm, Sara, Louis, Sarah Leonard, Dengler, Nora F., Wiendl, Heinz, Lünemann, Jan D., Sickmann, Albert, Hervier, Baptiste, Meuth, Sven G., Schneider, Udo, Schänzer, Anne, Krause, Sabine, Tomaras, Stylianos, Feist, Eugen, Hasseli, Rebecca, Goebel, Hans-Hilmar, Gallay, Laure, Streichenberger, Nathalie, Benveniste, Olivier, Stenzel, Werner, and Ruck, Tobias
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- 2022
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4. Assessing and improving the validity of COVID-19 autopsy studies - A multicentre approach to establish essential standards for immunohistochemical and ultrastructural analyses
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Krasemann, Susanne, Dittmayer, Carsten, von Stillfried, Saskia, Meinhardt, Jenny, Heinrich, Fabian, Hartmann, Kristin, Pfefferle, Susanne, Thies, Edda, von Manitius, Regina, Aschman, Tom Alex David, Radke, Josefine, Osterloh, Anja, Schmid, Simone, Buhl, Eva Miriam, Ihlow, Jana, Dubois, Frank, Arnhold, Viktor, Elezkurtaj, Sefer, Horst, David, Hocke, Andreas, Timm, Sara, Bachmann, Sebastian, Corman, Victor, Goebel, Hans-Hilmar, Matschke, Jakob, Stanelle-Bertram, Stephanie, Gabriel, Gülsah, Seilhean, Danielle, Adle-Biassette, Homa, Ondruschka, Benjamin, Ochs, Matthias, Stenzel, Werner, Heppner, Frank L., Boor, Peter, Radbruch, Helena, Laue, Michael, and Glatzel, Markus
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- 2022
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5. Comparative electron microscopic visualization of the lung alveolar epithelial glycocalyx with different staining and labeling methods.
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Gluhovic, Vladimir, Timm, Sara, Kuebler, Wolfgang M., Lopez‐Rodriguez, Elena, and Ochs, Matthias
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STAINS & staining (Microscopy) , *TRANSMISSION electron microscopy , *SIALIC acids , *GLYCOCALYX , *EPITHELIAL cells - Abstract
The alveolar surface of the lung is lined by an epithelium consisting of type I (AECI) and type II alveolar epithelial cells (AECII). This epithelium is covered by a liquid alveolar lining layer (ALL). Besides intra‐alveolar surfactant, ALL also contains the alveolar epithelial glycocalyx on the apical side of AECI and AECII. To better understand the alveolar epithelial glycocalyx, its ultrastructural visualization by transmission electron microscopy is required. The aim of this study was to systematically re‐evaluate routine cytochemical methods for visualization of the alveolar epithelial glycocalyx and specifically its glycan components. For this purpose, we used chemical fixation by vascular perfusion with aldehydes as a common routine approach in mice. After fixation, staining is needed for glycocalyx visualization. Cytochemical staining agents such as alcian blue, ruthenium red, and lanthanum nitrate were compared. In addition, SNL (Sambucus nigra lectin) and UEA1 (Ulex europaeus agglutinin I) were used for sialic acid and fucose‐specific labeling. Alcian blue showed the strongest staining, with cloud‐like structures, whereas ruthenium red appeared as thread‐like structures. On the other hand, lanthanum nitrate did not stain the alveolar epithelial glycocalyx. For specific sialic acid and fucose labeling, both lectins presented a specific signal. In conclusion, these methods can be used routinely for assessing ultrastructural changes of the alveolar epithelial glycocalyx in experimental in vivo models under different physiological and pathological conditions. In addition, cytochemical staining by tissue massage and post‐embedding lectin labeling after vascular perfusion support 3R (reduction, refinement, replacement) principles of animal welfare. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Sjuksköterskors erfarenheter av möten med våldsutsatta patienter : - En systematisk litteraturstudie
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Vaziri, Nadia, Timm, Sara, Vaziri, Nadia, and Timm, Sara
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Bakgrund: Våld i nära relation är ett brott mot mänskliga rättigheter och ettsamhällsproblem världen över. Våldet får negativa konsekvenser för den utsattaindividen och familjen. En stor andel patienter söker vård utan att utsattheten för vålduppdagas, vilket innebär ett lidande för patienten samt en belastning för samhället.Sjuksköterskan har en unik möjlighet att upptäcka våld i nära relation och förmedlastöd. Personcentrerad vård bygger på ett partnerskap mellan sjuksköterska och patient,där tillit kan hjälpa patienten att berätta om sina erfarenheter och känslor. Syfte: Syftetvar att undersöka sjuksköterskors erfarenheter av möten med våldsutsatta patienter.Metod: Denna studie har genomförts som en systematisk litteraturöversikt medinduktiv ansats. Resultat: Resultatet utgjordes av 19 vetenskapliga artiklar somsammanfattades i kategorierna; Sjuksköterskans erfarenheter av att identifieravåldsutsatthet, Sjuksköterskans erfarenheter i mötet med våldsutsatta patienter,Organisatoriska faktorer som påverkar mötet med våldsutsatta patienter. Slutsats: Detvar svårt för sjuksköterskan att fråga om våldsutsatthet då det är ett känsligt ochkomplext ämne som frambringade starka känslor och rädslor. Viktiga faktorer somframkom var utbildning och erfarenhet för sjuksköterskor som arbetar med våld i närarelation. Organisatoriska förutsättningar lyftes som essentiellt, och att applicerapersoncentrerad vård tycktes vara en förutsättning för att öppna upp för samtal.
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- 2024
7. Endothelial Heterogeneity in the Response to Autophagy Drives Small Vessel Muscularization in Pulmonary Hypertension.
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Qi Zhang, Yaoita, Nobuhiro, Tabuchi, Arata, Shaofei Liu, Shiau-Haln Chen, Qiuhua Li, Hegemann, Niklas, Caihong Li, Rodor, Julie, Timm, Sara, Laban, Hebatullah, Finkel, Toren, Stevens, Troy, Alvarez, Diego F., Erfinanda, Lasti, de Perrot, Marc, Kucherenko, Mariya M., Knosalla, Christoph, Ochs, Matthias, and Dimmeler, Stefanie
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- 2024
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8. Enzymatic modulation of the pulmonary glycocalyx alters susceptibility to Streptococcus pneumoniae
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Goekeri, Cengiz, primary, Linke, Kerstin Anja Kathrin, additional, Hoffmann, Karen, additional, Lopez-Rodriguez, Elena, additional, Gluhovic, Vladimir, additional, Voss, Anne, additional, Kunder, Sandra, additional, Zappe, Andreas, additional, Timm, Sara, additional, Nettesheim, Alina, additional, Schickinger, Sebastian Martin Klaus, additional, Zobel, Christian Matthias, additional, Pagel, Kevin, additional, Gruber, Achim Dieter, additional, Ochs, Matthias, additional, Witzenrath, Martin, additional, and Nouailles, Geraldine, additional
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- 2024
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9. Ileal mucus viscoelastic properties differ in Crohns disease
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Kramer, Catharina, primary, Rulff, Hanna, additional, Ziegler, Joern Felix, additional, Alzain, Nadra, additional, Addante, Annalisa, additional, Kuppe, Aditi, additional, Timm, Sara, additional, Schrade, Petra, additional, Bischoff, Philip, additional, Glauben, Rainer, additional, Duerr, Julia, additional, Ochs, Matthias, additional, Mall, Marcus A., additional, Gradzielski, Michael, additional, and Siegmund, Britta, additional
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- 2024
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10. Clustered DNA damage concentrated in particle trajectories causes persistent large-scale rearrangements in chromatin architecture
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Timm, Sara, Lorat, Yvonne, Jakob, Burkhard, Taucher-Scholz, Gisela, and Rübe, Claudia E.
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- 2018
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11. Characterization of Commercially Available Human Primary Alveolar Epithelial Cells.
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Herbst, Christopher J., Lopez-Rodriguez, Elena, Gluhovic, Vladimir, Schulz, Sabrina, Brandt, Raphael, Timm, Sara, Abledu, Jubilant, Falivene, Juliana, Pennitz, Peter, Kirsten, Holger, Nouailles, Geraldine, Witzenrath, Martin, Ochs, Matthias, and Kuebler, Wolfgang M.
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EPITHELIAL cells ,CELL culture ,DRUG delivery systems ,ION transport (Biology) ,GAS-liquid interfaces ,TIGHT junctions - Abstract
In vitro lung research requires appropriate cell culture models that adequately mimic in vivo structure and function. Previously, researchers extensively used commercially available and easily expandable A549 and NCI-H441 cells, which replicate some but not all features of alveolar epithelial cells. Specifically, these cells are often restricted by terminally altered expression while lacking important alveolar epithelial characteristics. Of late, human primary alveolar epithelial cells (hPAEpCs) have become commercially available but are so far poorly specified. Here, we applied a comprehensive set of technologies to characterize their morphology, surface marker expression, transcriptomic profile, and functional properties. At optimized seeding numbers of 7,500 cells per square centimeter and growth at a gas–liquid interface, hPAEpCs formed regular monolayers with tight junctions and amiloride-sensitive transepithelial ion transport. Electron microscopy revealed lamellar body and microvilli formation characteristic for alveolar type II cells. Protein and single-cell transcriptomic analyses revealed expression of alveolar type I and type II cell markers; yet, transcriptomic data failed to detect NKX2-1, an important transcriptional regulator of alveolar cell differentiation. With increasing passage number, hPAEpCs transdifferentiated toward alveolar-basal intermediates characterized as SFTPC
− , KRT8high , and KRT5− cells. In spite of marked changes in the transcriptome as a function of passaging, Uniform Manifold Approximation and Projection plots did not reveal major shifts in cell clusters, and epithelial permeability was unaffected. The present work delineates optimized culture conditions, cellular characteristics, and functional properties of commercially available hPAEpCs. hPAEpCs may provide a useful model system for studies on drug delivery, barrier function, and transepithelial ion transport in vitro. [ABSTRACT FROM AUTHOR]- Published
- 2024
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12. Uterine scars after cesarean delivery: from histology to the molecular and ultrastructural level
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Paping, Alexander, primary, Basler, Clara, additional, Ehrlich, Loreen, additional, Fasting, Carlo, additional, Melchior, Kerstin, additional, Ziska, Thomas, additional, Thiele, Mario, additional, Duda, Georg N., additional, Timm, Sara, additional, Ochs, Matthias, additional, Rancourt, Rebecca C., additional, Henrich, Wolfgang, additional, and Braun, Thorsten, additional
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- 2023
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13. Clustered double-strand breaks in heterochromatin perturb DNA repair after high linear energy transfer irradiation
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Lorat, Yvonne, Timm, Sara, Jakob, Burkhard, Taucher-Scholz, Gisela, and Rübe, Claudia E.
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- 2016
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14. The ultrastructural heterogeneity of lung surfactant revealed by serial section electron tomography: insights into the 3-D architecture of human tubular myelin
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Lettau, Marie, primary, Timm, Sara, additional, Dittmayer, Carsten, additional, Lopez-Rodriguez, Elena, additional, and Ochs, Matthias, additional
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- 2022
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15. Monitoring tubular epithelial cell damage in AKI via urine flow cytometry
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Kujat, Jacob, primary, Langhans, Valerie, additional, Brand, Hannah, additional, Freund, Paul, additional, Görlich, Nina, additional, Wagner, Leonie, additional, Metzke, Diana, additional, Timm, Sara, additional, Ochs, Matthias, additional, Grützkau, Andreas, additional, Baumgart, Sabine, additional, Skopnik, Christopher M., additional, Hiepe, Falk, additional, Riemekasten, Gabriela, additional, Klocke, Jan, additional, and Enghard, Philipp, additional
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- 2022
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16. SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis
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Wendisch, Daniel, primary, Dietrich, Oliver, additional, Mari, Tommaso, additional, von Stillfried, Saskia, additional, Ibarra, Ignacio L., additional, Mittermaier, Mirja, additional, Mache, Christin, additional, Chua, Robert Lorenz, additional, Knoll, Rainer, additional, Timm, Sara, additional, Brumhard, Sophia, additional, Krammer, Tobias, additional, Zauber, Henrik, additional, Hiller, Anna Luisa, additional, Pascual-Reguant, Anna, additional, Mothes, Ronja, additional, Bülow, Roman David, additional, Schulze, Jessica, additional, Leipold, Alexander M., additional, Djudjaj, Sonja, additional, Erhard, Florian, additional, Geffers, Robert, additional, Pott, Fabian, additional, Kazmierski, Julia, additional, Radke, Josefine, additional, Pergantis, Panagiotis, additional, Baßler, Kevin, additional, Conrad, Claudia, additional, Aschenbrenner, Anna C., additional, Sawitzki, Birgit, additional, Landthaler, Markus, additional, Wyler, Emanuel, additional, Horst, David, additional, Hippenstiel, Stefan, additional, Hocke, Andreas, additional, Heppner, Frank L., additional, Uhrig, Alexander, additional, Garcia, Carmen, additional, Machleidt, Felix, additional, Herold, Susanne, additional, Elezkurtaj, Sefer, additional, Thibeault, Charlotte, additional, Witzenrath, Martin, additional, Cochain, Clément, additional, Suttorp, Norbert, additional, Drosten, Christian, additional, Goffinet, Christine, additional, Kurth, Florian, additional, Schultze, Joachim L., additional, Radbruch, Helena, additional, Ochs, Matthias, additional, Eils, Roland, additional, Müller-Redetzky, Holger, additional, Hauser, Anja E., additional, Luecken, Malte D., additional, Theis, Fabian J., additional, Conrad, Christian, additional, Wolff, Thorsten, additional, Boor, Peter, additional, Selbach, Matthias, additional, Saliba, Antoine-Emmanuel, additional, and Sander, Leif Erik, additional
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- 2021
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17. Präparation und Visualisierung des murinen Subarachnoidalraumes (SAR) für histologische und elektronenmikroskopische (EM) Analysen
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Tielking, Katharina, Xu, Ran, Timm, Sara, Schrade, Petra, Schoknecht, Felix Thomas, Ochs, Matthias, and Vajkoczy, Peter
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ddc: 610 ,cardiovascular diseases ,610 Medical sciences ,Medicine ,nervous system diseases - Abstract
Objective: Histological analyses and EM visualization of local effects after subarachnoid hemorrhage (SAH) require a preservation of the anatomical structure of the SAS. However, systematical approaches for conserving SAS in animal models of SAH are scarce in the literature. Hence, we aimed at establishing[for full text, please go to the a.m. URL], 72. Jahrestagung der Deutschen Gesellschaft für Neurochirurgie (DGNC), Joint Meeting mit der Polnischen Gesellschaft für Neurochirurgie
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- 2021
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18. Metabolic Glycoengineering Enables the Ultrastructural Visualization of Sialic Acids in the Glycocalyx of the Alveolar Epithelial Cell Line hAELVi
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Brandt, Raphael, Timm, Sara, Gorenflos López, Jacob L., Kwame Abledu, Jubilant, Kuebler, Wolfgang M., Hackenberger, Christian P. R., Ochs, Matthias, and Lopez-Rodriguez, Elena
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Histology ,electron microscopy ,metabolic glycoengineering ,alveolar epithelium ,Biomedical Engineering ,Bioengineering and Biotechnology ,Bioengineering ,huAELVi ,sialic acid ,Methods ,bioorthogonal labeling ,glycocalyx ,600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit ,Biotechnology ,hAELVi - Abstract
The glycocalyx—a plethora of sugars forming a dense layer that covers the cell membrane—is commonly found on the epithelial surface of lumen forming tissue. New glycocalyx specific properties have been defined for various organs in the last decade. However, in the lung alveolar epithelium, its structure and functions remain almost completely unexplored. This is partly due to the lack of physiologically relevant, cost effective in vitro models. As the glycocalyx is an essential but neglected part of the alveolar epithelial barrier, understanding its properties holds the promise to enhance the pulmonary administration of drugs and delivery of nanoparticles. Here, using air-liquid-interface (ALI) cell culture, we focus on combining metabolic glycoengineering with glycan specific electron and confocal microscopy to visualize the glycocalyx of a recently immortalized human alveolar epithelial cell line (hAELVi). For this purpose, we applied different bioorthogonal labeling approaches to visualize sialic acid—an amino sugar that provides negative charge to the lung epithelial glycocalyx—using both fluorescence and gold-nanoparticle labeling. Further, we compared mild chemical fixing/freeze substitution and standard cytochemical electron microscopy embedding protocols for their capacity of contrasting the glycocalyx. In our study, we established hAELVi cells as a convenient model for investigating human alveolar epithelial glycocalyx. Transmission electron microscopy revealed hAELVi cells to develop ultrastructural features reminiscent of alveolar epithelial type II cells (ATII). Further, we visualized extracellular uni- and multilamellar membranous structures in direct proximity to the glycocalyx at ultrastructural level, indicating putative interactions. The lamellar membranes were able to form structures of higher organization, and we report sialic acid to be present within those. In conclusion, combining metabolite specific glycoengineering with ultrastructural localization presents an innovative method with high potential to depict the molecular distribution of individual components of the alveolar epithelial glycocalyx and its interaction partners.
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- 2021
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19. On Top of the Alveolar Epithelium: Surfactant and the Glycocalyx
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Ochs, Matthias, Hegermann, Jan, Lopez-Rodriguez, Elena, Timm, Sara, Nouailles, Geraldine, Matuszak, Jasmin, Simmons, Szandor, Witzenrath, Martin, and Kuebler, Wolfgang M.
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alveoli ,surfactant ,air-liquid interface ,Pulmonary Surfactants ,Review ,Respiratory Mucosa ,respiratory system ,lung ,Pulmonary Alveoli ,lcsh:Chemistry ,lcsh:Biology (General) ,lcsh:QD1-999 ,Alveolar Epithelial Cells ,air-blood barrier ,Animals ,Humans ,epithelium ,lcsh:QH301-705.5 ,glycocalyx ,600 Technik, Medizin, angewandte Wissenschaften::610 Medizin und Gesundheit::610 Medizin und Gesundheit ,alveolar lining layer - Abstract
Gas exchange in the lung takes place via the air-blood barrier in the septal walls of alveoli. The tissue elements that oxygen molecules have to cross are the alveolar epithelium, the interstitium and the capillary endothelium. The epithelium that lines the alveolar surface is covered by a thin and continuous liquid lining layer. Pulmonary surfactant acts at this air-liquid interface. By virtue of its biophysical and immunomodulatory functions, surfactant keeps alveoli open, dry and clean. What needs to be added to this picture is the glycocalyx of the alveolar epithelium. Here, we briefly review what is known about this glycocalyx and how it can be visualized using electron microscopy. The application of colloidal thorium dioxide as a staining agent reveals differences in the staining pattern between type I and type II alveolar epithelial cells and shows close associations of the glycocalyx with intraalveolar surfactant subtypes such as tubular myelin. These morphological findings indicate that specific spatial interactions between components of the surfactant system and those of the alveolar epithelial glycocalyx exist which may contribute to the maintenance of alveolar homeostasis, in particular to alveolar micromechanics, to the functional integrity of the air-blood barrier, to the regulation of the thickness and viscosity of the alveolar lining layer, and to the defence against inhaled pathogens. Exploring the alveolar epithelial glycocalyx in conjunction with the surfactant system opens novel physiological perspectives of potential clinical relevance for future research.
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- 2020
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20. Collapse induration of alveoli is an ultrastructural finding in a COVID-19 patient
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Ochs, Matthias, primary, Timm, Sara, additional, Elezkurtaj, Sefer, additional, Horst, David, additional, Meinhardt, Jenny, additional, Heppner, Frank L., additional, Weber-Carstens, Steffen, additional, Hocke, Andreas C., additional, and Witzenrath, Martin, additional
- Published
- 2021
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21. Metabolic Glycoengineering Enables the Ultrastructural Visualization of Sialic Acids in the Glycocalyx of the Alveolar Epithelial Cell Line hAELVi
- Author
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Brandt, Raphael, primary, Timm, Sara, additional, Gorenflos López, Jacob L., additional, Kwame Abledu, Jubilant, additional, Kuebler, Wolfgang M., additional, Hackenberger, Christian P. R., additional, Ochs, Matthias, additional, and Lopez-Rodriguez, Elena, additional
- Published
- 2021
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22. On Top of the Alveolar Epithelium: Surfactant and the Glycocalyx
- Author
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Ochs, Matthias, primary, Hegermann, Jan, additional, Lopez-Rodriguez, Elena, additional, Timm, Sara, additional, Nouailles, Geraldine, additional, Matuszak, Jasmin, additional, Simmons, Szandor, additional, Witzenrath, Martin, additional, and Kuebler, Wolfgang M., additional
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- 2020
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23. Prevention of DNA Replication Stress by CHK1 Leads to Chemoresistance Despite a DNA Repair Defect in Homologous Recombination in Breast Cancer
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Meyer, Felix, primary, Becker, Saskia, additional, Classen, Sandra, additional, Parplys, Ann Christin, additional, Mansour, Wael Yassin, additional, Riepen, Britta, additional, Timm, Sara, additional, Ruebe, Claudia, additional, Jasin, Maria, additional, Wikman, Harriet, additional, Petersen, Cordula, additional, Rothkamm, Kai, additional, and Borgmann, Kerstin, additional
- Published
- 2020
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24. Strahleninduzierte DNA-Schäden im Kontext des Chromatins : Elektronenmikroskopische Analysen humaner Zellen nach Exposition mit unterschiedlichen Strahlenqualitäten
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Timm, Sara and Meier, Carola
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ddc:610 ,ddc:620 ,DNS-Schädigung ,Chromatin - Abstract
Die Reparatur von strahleninduzierten Desoxyribonukleinsäure (DNA)- Doppelstrangbrüchen ist entscheidend für die Aufrechterhaltung der genomischen Integrität. Inwieweit die Dichte und Komplexität von strahleninduztierten DNA-Schäden (DNA-Schadensmuster) einen Einfluss auf die Chromatinstruktur nehmen und die Reparatur beeinflussen, stellen wichtige und zu klärende Fragen dar. Im Rahmen dieser Arbeit wurden humane, dermale Fibroblasten mit verschiedenen Strahlenqualitäten bestrahlt, um das DNA-Schadensmuster sowie Veränderungen in der Chromatinstruktur während der DNA-Schadenantwort und im zeitlichen Verlauf des Reparaturprozesses zu charakterisieren. Dabei konnten nach der Bestrahlung verschiedene Reparaturfaktoren über immunologische Markierungen mittels Immunfluoreszenzmikroskopie oder Transmissionselektronenmikroskopie genauer untersucht werden. Mit der hochauflösenden Transmissionselektronenmikroskopie wurden die zentralen Reparaturproteine der Nicht-homologen End-zu-End Verknüpfung auf Einzelmolekülebene im Chromatinkontext (Euchromatin, Heterochromatin) dargestellt. Im Verlauf der DNA-Schadensantwort konnten sowohl nach Photonenbestrahlung, als auch nach Teilchenbestrahlung Chromatinumstrukturierungen festgestellt werden. Insbesondere nach der Teilchenbestrahlung traten massive, dekondensierte Chromatin-Regionen auf. Im weiteren Verlauf der Untersuchungen konnte gezeigt werden, dass die Chromatinveränderungen mit der Akkumulation der verschiedenen Reparaturfaktoren assoziiert waren und in Verbindung mit der Reparatur standen. Dabei traten nach Photonenbestrahlung isolierte DNA-Schäden im gesamten Zellkern auf, die effizienter als nach Teilchenbestrahlung repariert werden konnten. Nach Teilchenbestrahlung zeigten sich hingegen zahlreiche Doppelstrangbrüche in räumlicher Nähe zueinander, die überwiegend in der heterochromatischen Peripherie der dekondensierten Chromatin-Regionen lokalisiert waren. Diese komplexen Schäden, die vermutlich in Verbindung mit den massiven Chromatinveränderungen standen, wurden zeitlich verzögert und ineffizient repariert. Dabei besteht die Annahme, dass sie die Wiederherstellung der ursprünglichen Chromatinkostitution verhinderten und somit die funktionelle Organisation der Zelle beeinflussten. Diese Erkenntnisse machen deutlich, dass die Reparatur maßgeblich durch das DNA-Schadensmuster beeinflusst wird. Die Umstrukturierung des Chromatins ist dabei ein essentieller Prozess und nimmt somit eine wichtigere Rolle ein, als bisher angenommen wurde. The repair of radiation-induced DNA (deoxyribonucleic acid) double-strand breaks is crucial for maintaining genomic integrity. The effect that the density and complexity of these radiation-induced damages has on chromatin structure and repair efficiency poses a considerable question. In this study, human dermal fibroblasts were irradiated with various radiation qualities to characterize DNA damage patterns, as well as, changes in chromatin structure during the DNA damage response within the time course of the repair process. Following irradiation, several repair factors were investigated by immunofluorescence microscopy or transmission electron microscopy. Using high-resolution transmission electron microscopy, the central repair proteins of the non-homologous end-joining repair pathway could be visualized in the context of the chromatin ultrastructure (euchromatin, heterochromatin) at a single-molecule level. In the course of the DNA damage response, chromatin reorganization was detected after both photon irradiation and charged particle irradiation. In particular, massive decondensed chromatin regions appeared after particle irradiation. Further investigations showed that these chromatin alterations were associated with the accumulation of various repair factors and the repair process. Photon irradiation resulted in isolated DNA damage throughout the entire nucleus which subsequently was efficiently repaired. After particle irradiation, however, numerous double-strand breaks were found in close proximity and located predominantly in the heterochromatic periphery of the decondensed chromatin regions. These complex damages are believed to be related to the massive chromatin changes and their repair was delayed and inefficient. It is assumed that this prevented the restoration of the original chromatin constitution and thus influenced the functional organization of the cell. These findings clarify that repair efficiency is significantly influenced by the DNA damage pattern. Chromatin restructuring is therefore an essential process and plays a more decisive role than previously thought.
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- 2018
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25. Hair Follicle Stem Cell Faith Is Dependent on Chromatin Remodeling Capacity Following Low-Dose Radiation
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Schuler, Nadine, primary, Timm, Sara, additional, and Rübe, Claudia E., additional
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- 2018
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26. Snowfall.
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Timm, Sara
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- SNOWFALL (Poem), TIMM, Sara
- Abstract
The poem "Snowfall" by Sara Timm is presented. First Line: The first snowfall; Last Line: spine.
- Published
- 2016
27. Endothelial Heterogeneity in the Response to Autophagy Drives Small Vessel Muscularization in Pulmonary Hypertension.
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Zhang Q, Yaoita N, Tabuchi A, Liu S, Chen SH, Li Q, Hegemann N, Li C, Rodor J, Timm S, Laban H, Finkel T, Stevens T, Alvarez DF, Erfinanda L, de Perrot M, Kucherenko MM, Knosalla C, Ochs M, Dimmeler S, Korff T, Verma S, Baker AH, and Kuebler WM
- Subjects
- Animals, Humans, Mice, Rats, Cell Proliferation, Male, Vascular Remodeling, Mice, Knockout, Autophagy-Related Protein 7 genetics, Autophagy-Related Protein 7 metabolism, Disease Models, Animal, Hypoxia metabolism, Hypoxia pathology, Cells, Cultured, Mice, Inbred C57BL, Autophagy, Hypertension, Pulmonary pathology, Hypertension, Pulmonary physiopathology, Hypertension, Pulmonary metabolism, Hypertension, Pulmonary genetics, Endothelial Cells metabolism, Endothelial Cells pathology, Pulmonary Artery pathology, Pulmonary Artery metabolism, Pulmonary Artery physiopathology, Apoptosis
- Abstract
Background: Endothelial cell (EC) apoptosis and proliferation of apoptosis-resistant cells is a hallmark of pulmonary hypertension (PH). Yet, why some ECs die and others proliferate and how this contributes to vascular remodeling is unclear. We hypothesized that this differential response may: (1) relate to different EC subsets, namely pulmonary artery (PAECs) versus microvascular ECs (MVECs); (2) be attributable to autophagic activation in both EC subtypes; and (3) cause replacement of MVECs by PAECs with subsequent distal vessel muscularization., Methods: EC subset responses to chronic hypoxia were assessed by single-cell RNA sequencing of murine lungs. Proliferative versus apoptotic responses, activation, and role of autophagy were assessed in human and rat PAECs and MVECs, and in precision-cut lung slices of wild-type mice or mice with endothelial deficiency in the autophagy-related gene 7 ( Atg7
EN-KO ). Abundance of PAECs versus MVECs in precapillary microvessels was assessed in lung tissue from patients with PH and animal models on the basis of structural or surface markers., Results: In vitro and in vivo, PAECs proliferated in response to hypoxia, whereas MVECs underwent apoptosis. Single-cell RNA sequencing analyses support these findings in that hypoxia induced an antiapoptotic, proliferative phenotype in arterial ECs, whereas capillary ECs showed a propensity for cell death. These distinct responses were prevented in hypoxic Atg7EN-KO mice or after ATG7 silencing, yet replicated by autophagy stimulation. In lung tissue from mice, rats, or patients with PH, the abundance of PAECs in precapillary arterioles was increased, and that of MVECs reduced relative to controls, indicating replacement of microvascular by macrovascular ECs. EC replacement was prevented by genetic or pharmacological inhibition of autophagy in vivo. Conditioned medium from hypoxic PAECs yet not MVECs promoted pulmonary artery smooth muscle cell proliferation and migration in a platelet-derived growth factor-dependent manner. Autophagy inhibition attenuated PH development and distal vessel muscularization in preclinical models., Conclusions: Autophagic activation by hypoxia induces in parallel PAEC proliferation and MVEC apoptosis. These differential responses cause a progressive replacement of MVECs by PAECs in precapillary pulmonary arterioles, thus providing a macrovascular context that in turn promotes pulmonary artery smooth muscle cell proliferation and migration, ultimately driving distal vessel muscularization and the development of PH., Competing Interests: None.- Published
- 2024
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28. Enzymatic Modulation of the Pulmonary Glycocalyx Enhances Susceptibility to Streptococcus pneumoniae .
- Author
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Goekeri C, Linke KAK, Hoffmann K, Lopez-Rodriguez E, Gluhovic V, Voß A, Kunder S, Zappe A, Timm S, Nettesheim A, Schickinger SMK, Zobel CM, Pagel K, Gruber AD, Ochs M, Witzenrath M, and Nouailles G
- Abstract
The pulmonary epithelial glycocalyx is rich in glycosaminoglycans such as hyaluronan and heparan sulfate. Despite their presence, the importance of these glycosaminoglycans in bacterial lung infections remains elusive. To address this, we intranasally inoculated mice with Streptococcus pneumoniae in the presence or absence of enzymes targeting pulmonary hyaluronan and heparan sulfate, followed by characterization of subsequent disease pathology, pulmonary inflammation, and lung barrier dysfunction. Enzymatic degradation of hyaluronan and heparan sulfate exacerbated pneumonia in mice, as evidenced by increased disease scores and alveolar neutrophil recruitment. However, targeting epithelial hyaluronan in combination with Streptococcus pneumoniae infection further exacerbated systemic disease, indicated by elevated splenic bacterial load and plasma levels of pro-inflammatory cytokines. In contrast, enzymatic cleavage of heparan sulfate resulted in increased bronchoalveolar bacterial burden, lung damage and pulmonary inflammation in mice infected with Streptococcus pneumoniae . Accordingly, heparinase-treated mice also exhibited disrupted lung barrier integrity as evidenced by higher alveolar edema scores and vascular protein leakage into the airways. This finding was corroborated in a human alveolus-on-a-chip platform, confirming that heparinase treatment also disrupts the human lung barrier during Streptococcus pneumoniae infection. Notably, enzymatic pre-treatment with either hyaluronidase or heparinase also rendered human epithelial cells more sensitive to pneumococcal-induced barrier disruption, as determined by transepithelial electrical resistance measurements, consistent with our findings in murine pneumonia. Taken together, these findings demonstrate the importance of intact hyaluronan and heparan sulfate in limiting pneumococci-induced damage, pulmonary inflammation, and epithelial barrier function and integrity. This article is open access and distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/).
- Published
- 2024
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29. The ultrastructural heterogeneity of lung surfactant revealed by serial section electron tomography: insights into the 3-D architecture of human tubular myelin.
- Author
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Lettau M, Timm S, Dittmayer C, Lopez-Rodriguez E, and Ochs M
- Subjects
- Animals, Humans, Lung ultrastructure, Mice, Myelin Sheath, Surface-Active Agents, Electron Microscope Tomography, Pulmonary Surfactants
- Abstract
Weibel's hypothetical three-dimensional (3-D) model in 1966 provided first ultrastructural details into tubular myelin (TM), a unique, complex surfactant subtype found in the hypophase of the alveolar lining layer. Although initial descriptions by electron microscopy (EM) were already published in the 1950s, a uniform morphological differentiation from other intra-alveolar surfactant subtypes is still missing and potential structure-function relationships remain enigmatic. Technical developments in volume EM methods now allow a more detailed reinvestigation, to address unanswered ultrastructural questions, we analyzed ultrathin sections of humanized SP-A1/SP-A2 coexpressing mouse and human lung samples by conventional transmission EM. We combined these two-dimensional (2-D) information with 3-D analysis of single- and dual-axis electron tomography of serial sections for high z -resolution (in a range of a few nanometers) and extended volumes of up to 1 µm total z -information, this study reveals that TM constitutes a heterogeneous surfactant organization mainly comprised of distorted parallel membrane planes with local intersections, which are distributed all over the TM substructure. These intersecting membrane planes form, among other various polygons, the well-known 2-D "lattice", respectively 3-D quadratic tubules, which in many analyzed spots of human alveoli appear to be less abundant than also observed nonconcentric 3-D lamellae, the additional application of serial section electron tomography to conventional transmission EM demonstrates a high heterogeneity of TM membrane networks, which indicates dynamic transformations between its substructures. Our method provides an ideal basis for further in and ex vivo structural analyses of surfactant under various conditions at nanometer scale.
- Published
- 2022
- Full Text
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