29 results on '"Thumser-Henner, Pauline'
Search Results
2. Methadone does not potentiate the effect of doxorubicin in canine tumour cell lines
- Author
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Claudia Cueni, Katarzyna J. Nytko, Pauline Thumser‐Henner, Mathias S. Weyland, and Carla Rohrer Bley
- Subjects
µ‐receptor ,buprenorphine ,cancer ,dogs ,flow cytometry ,opioid receptor ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Opioid receptor activation was shown to enhance the efficacy of anti‐neoplastic drugs in several human cancer cell lines. In these cell lines, doxorubicin increased the number of opioid receptors and methadone concurrently enhanced cellular doxorubicin uptake. Triggered through lay press and media, animal owners started to challenge veterinary oncologists with questions about methadone use in anti‐cancer therapy. Especially in veterinary medicine, where side effects of chemotherapy are tolerated to a lesser extent and hence smaller doses are given, agents potentiating chemotherapeutic agents would be an optimal approach to treatment. Canine transitional cell carcinoma cells (TCC, K9TCC), canine osteosarcoma cells (OSA, Abrams) and canine hemangiosarcoma cells (HSA, DAL‐4) were incubated with different combinations of methadone, buprenorphine and doxorubicin, in order to test inhibition of cell proliferation. Opioid receptor density was assessed with fluorescence‐activated cell sorting in drug native and doxorubicin pretreated cells. In TCC and OSA cell lines opioid receptor density increased after doxorubicin pretreatment. In combination treatment, however, we did not find significant potentiation of doxorubicin's inhibitory effect on proliferation in these cell lines. Neither was there a significant increase of the effect of doxorubicin when the opioids were added 24 hr before doxorubicin. Hence, we could not confirm the hypothesis that opioids increase the anti‐proliferative effect of the anti‐neoplastic drug doxorubicin in any of these canine tumour cell lines. The lack of effect on a cellular level does not warrant a clinical approach to use opioids together with doxorubicin in dogs with cancer.
- Published
- 2020
- Full Text
- View/download PDF
3. Mutations of BRCA2 in canine mammary tumors and their targeting potential in clinical therapy
- Author
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Pauline Thumser-Henner, Katarzyna J. Nytko, and Carla Rohrer Bley
- Subjects
Canine mammary cancer ,BRCA2 ,PARP inhibitors ,RAD51 ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Dogs develop cancer spontaneously with age, with breed-specific risk underlying differences in genetics. Mammary tumors are reported as the most frequent neoplasia in intact female dogs. Their high prevalence in certain breeds suggests a genetic component, as it is the case in human familial breast cancer, distinctly in BRCA2-associated cancers. However, the molecular genetics of BRCA2 in the pathogenesis of canine cancer are still under investigation. Genetic variations of canine BRCA2 comprised single nucleotide polymorphisms, insertions and deletions. The BRCA2 level has been shown to be reduced in tumor gland samples, suggesting that low expression of BRCA2 is contributing to mammary tumor development in dogs. Additionally, specific variations of the BRCA2 gene affect RAD51 binding strength, critically damage the BRCA2-RAD51 binding and further provoke a defective repair. In humans, preclinical and clinical data revealed a synthetic lethality interaction between BRCA2 mutations and PARP inhibition. PARP inhibitors are successfully used to increase chemo- and radiotherapy sensitivity, although they are also associated with numerous side effects and acquired resistance. Cancer treatment of canine patients could benefit from increased chemo- and radiosensitivity, as their cancer therapy protocols usually include only low doses of drugs or radiation. Early investigations show tolerability of iniparib in dogs. PARP inhibitors also imply higher therapy costs and consequently are less likely to be accepted by pet owners. We summarized the current evidence of canine BRCA2 gene alterations and their association with mammary tumors. Mutations in the canine BRCA2 gene have the potential to be exploited in clinical therapy through the usage of PARP inhibitors. However, further investigations are needed before introducing PARP inhibitors in veterinary clinical practice.
- Published
- 2020
- Full Text
- View/download PDF
4. Dynamic DNA Damage and Repair Modeling: Bridging the Gap Between Experimental Damage Readout and Model Structure.
- Author
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Mathias S. Weyland, Pauline Thumser-Henner, Carla Rohrer Bley, Simone Ulzega, Alke Petri-Fink, Marco Lattuada 0002, Stephan Scheidegger, and Rudolf M. Füchslin
- Published
- 2018
- Full Text
- View/download PDF
5. Role of HSP70 in response to (thermo)radiotherapy: analysis of gene expression in canine osteosarcoma cells by RNA-seq
- Author
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Nytko, Katarzyna J., Thumser-Henner, Pauline, Russo, Giancarlo, Weyland, Mathias S., and Rohrer Bley, Carla
- Published
- 2020
- Full Text
- View/download PDF
6. Mutations of BRCA2 in canine mammary tumors and their targeting potential in clinical therapy
- Author
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Thumser-Henner, Pauline, Nytko, Katarzyna J., and Rohrer Bley, Carla
- Published
- 2020
- Full Text
- View/download PDF
7. Cell line-specific efficacy of thermoradiotherapy in human and canine cancer cells in vitro.
- Author
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Katarzyna J Nytko, Pauline Thumser-Henner, Mathias S Weyland, Stephan Scheidegger, and Carla Rohrer Bley
- Subjects
Medicine ,Science - Abstract
ObjectiveAims were to investigate sensitivity of various human and canine cancer cell lines to hyperthermia and the influence of particular treatment conditions, and to analyze the DNA-damage response and mode of cell death in cell line radiosensitized by hyperthermia. Additionally, we were interested in the involvement of HSP70 in radiosensitization.MethodsRadiosensitization by hyperthermia was determined in a panel of human and canine cancer cell lines using clonogenic cell survival assay, as well as levels of heat shock proteins (HSPs) using immunoblotting. The influence of the hyperthermia-radiotherapy time gap, different temperatures and the order of treatments on clonogenicity of hyperthermia-sensitive A549 cells was investigated. Additionally, DNA damage and cell death were assessed by Comet assay and an apoptosis/necrosis assay. Further we induced transient knockdown in A549 cells to test HSP70's involvement in radiosensitization.ResultsOut of eight cell lines tested, only two (A549 and Abrams) showed significant decrease in clonogenic cell survival when pre-treated with hyperthermia at 42°C. Strong induction of HSP70 upon thermoradiotherapy (HT-RT) treatment was found in all cell lines. Transient knockdown of HSP70 in A549 cells did not result in decrease of clonogenic cell survival in response to HT-RT.ConclusionTumor cell-type, temperature and order of treatment play an important role in radiosensitization by hyperthermia. However, hyperthermia has limited potency to radiosensitize canine cancer cells grown in a 2D cell culture setting presented here. DNA damage and apoptosis/necrosis did not increase upon combined treatment and cytosolic levels of HSP70 appear not to play critical role in the radiosensitization of A549 cells.
- Published
- 2019
- Full Text
- View/download PDF
8. Role of HSP70 in response to (thermo)radiotherapy : analysis of gene expression in canine osteosarcoma cells by RNA-seq
- Author
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Nytko, Katarzyna J., Thumser-Henner, Pauline, Russo, Giancarlo, Weyland, Mathias S., Rohrer Bley, Carla, Nytko, Katarzyna J., Thumser-Henner, Pauline, Russo, Giancarlo, Weyland, Mathias S., and Rohrer Bley, Carla
- Abstract
Pre-treatment of tumors with hyperthermia is often used to increase the efficacy of radiotherapy. One of the main proteins induced in response to hyperthermia is heat shock protein 70 (HSP70). The aim of our study was to investigate up- and down-regulated genes in response to (thermo)radiotherapy in HSP70 proficient and deficient canine osteosarcoma cell line (Abrams), and functional role of HSP70 in the mechanism of thermoradiosensitization. Cells were transfected with negative control siRNA or siRNA targeting HSP70 and treated with hyperthermia (HT), radiotherapy (RT), and thermoradiotherapy (HTRT). RNA sequencing was used to analyze gene expression. Hyperthermia and thermoradiotherapy, but not radiotherapy alone, induced differential gene expression. We identified genes differentially expressed only in HSP70 knockdown (thus HSP70-dependent) cells in response to hyperthermia and thermoradiotherapy. Interestingly, cell proliferation but not clonogenicity and apoptosis/necrosis was affected by the HSP70 knockdown in response to thermoradiotherapy. The results suggest that HSP70 regulates expression of specific genes in response to hyperthermia and thermoradiotherapy. Further investigations into the role of specific genes regulated in a HSP70-dependent manner in response to thermoradiotherapy could pave a way into new, combinatorial treatment options for (canine) osteosarcoma and other cancer types.
- Published
- 2022
9. Methadone does not potentiate the effect of doxorubicin in canine tumour cell lines
- Author
-
Cueni, Claudia, Nytko, Katarzyna J., Thumser-Henner, Pauline, Weyland, Mathias S., Rohrer Bley, Carla, Cueni, Claudia, Nytko, Katarzyna J., Thumser-Henner, Pauline, Weyland, Mathias S., and Rohrer Bley, Carla
- Abstract
Opioid receptor activation was shown to enhance the efficacy of anti-neoplastic drugs in several human cancer cell lines. In these cell lines, doxorubicin increased the number of opioid receptors and methadone concurrently enhanced cellular doxorubicin uptake. Triggered through lay press and media, animal owners started to challenge veterinary oncologists with questions about methadone use in anti-cancer therapy. Especially in veterinary medicine, where side effects of chemotherapy are tolerated to a lesser extent and hence smaller doses are given, agents potentiating chemotherapeutic agents would be an optimal approach to treatment. Canine transitional cell carcinoma cells (TCC, K9TCC), canine osteosarcoma cells (OSA, Abrams) and canine hemangiosarcoma cells (HSA, DAL-4) were incubated with different combinations of methadone, buprenorphine and doxorubicin, in order to test inhibition of cell proliferation. Opioid receptor density was assessed with fluorescence-activated cell sorting in drug native and doxorubicin pretreated cells. In TCC and OSA cell lines opioid receptor density increased after doxorubicin pretreatment. In combination treatment, however, we did not find significant potentiation of doxorubicin's inhibitory effect on proliferation in these cell lines. Neither was there a significant increase of the effect of doxorubicin when the opioids were added 24 hr before doxorubicin. Hence, we could not confirm the hypothesis that opioids increase the anti-proliferative effect of the anti-neoplastic drug doxorubicin in any of these canine tumour cell lines. The lack of effect on a cellular level does not warrant a clinical approach to use opioids together with doxorubicin in dogs with cancer.
- Published
- 2022
10. Role of HSP70 in response to (thermo)radiotherapy: analysis of gene expression in canine osteosarcoma cells by RNA-seq
- Author
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Mathias S. Weyland, Carla Rohrer Bley, Pauline Thumser-Henner, Giancarlo Russo, Katarzyna J. Nytko, University of Zurich, and Nytko, Katarzyna J
- Subjects
Disease model, animal ,10253 Department of Small Animals ,Vesicular Transport Proteins ,lcsh:Medicine ,Bone neoplasm ,615: Pharmakologie und Therapeutik ,Membrane glycoprotein ,Gene expression ,Dog ,Vesicular transport protein ,Bone cancer ,Cluster Analysis ,RNA-Seq ,11434 Center for Clinical Studies ,RNA, Small Interfering ,lcsh:Science ,Cancer ,Regulation of gene expression ,Gene knockdown ,Osteosarcoma ,Principal Component Analysis ,Multidisciplinary ,Membrane Glycoproteins ,HSP70 heat-shock protein ,Transfection ,Photon ,Gene Expression Regulation, Neoplastic ,Matrix Metalloproteinase 1 ,Hyperthermia ,610 Medicine & health ,Bone Neoplasms ,Biology ,Canine Osteosarcoma ,Article ,Dogs ,medicine ,Animals ,HSP70 Heat-Shock Proteins ,RNA, Messenger ,Cell Proliferation ,1000 Multidisciplinary ,Photons ,11077 Center for Applied Biotechnology and Molecular Medicine ,Radiotherapy ,Animal ,572: Biochemie ,Cell growth ,lcsh:R ,Hyperthermia, Induced ,medicine.disease ,Disease Models, Animal ,Cancer research ,lcsh:Q - Abstract
Pre-treatment of tumors with hyperthermia is often used to increase the efficacy of radiotherapy. One of the main proteins induced in response to hyperthermia is heat shock protein 70 (HSP70). The aim of our study was to investigate up- and down-regulated genes in response to (thermo)radiotherapy in HSP70 proficient and deficient canine osteosarcoma cell line (Abrams), and functional role of HSP70 in the mechanism of thermoradiosensitization. Cells were transfected with negative control siRNA or siRNA targeting HSP70 and treated with hyperthermia (HT), radiotherapy (RT), and thermoradiotherapy (HTRT). RNA sequencing was used to analyze gene expression. Hyperthermia and thermoradiotherapy, but not radiotherapy alone, induced differential gene expression. We identified genes differentially expressed only in HSP70 knockdown (thus HSP70-dependent) cells in response to hyperthermia and thermoradiotherapy. Interestingly, cell proliferation but not clonogenicity and apoptosis/necrosis was affected by the HSP70 knockdown in response to thermoradiotherapy. The results suggest that HSP70 regulates expression of specific genes in response to hyperthermia and thermoradiotherapy. Further investigations into the role of specific genes regulated in a HSP70-dependent manner in response to thermoradiotherapy could pave a way into new, combinatorial treatment options for (canine) osteosarcoma and other cancer types., Scientific Reports, 10 (1), ISSN:2045-2322
- Published
- 2020
11. Author response for 'Methadone does not potentiate the effect of doxorubicin in canine tumour cell lines'
- Author
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Carla Rohrer Bley, Claudia Cueni, Pauline Thumser-Henner, Katarzyna J. Nytko, and Mathias S. Weyland
- Subjects
business.industry ,Cell culture ,Cancer research ,Medicine ,Doxorubicin ,business ,Methadone ,medicine.drug - Published
- 2020
12. Methadone does not potentiate the effect of doxorubicin in canine tumour cell lines
- Author
-
Pauline Thumser-Henner, Katarzyna J. Nytko, Claudia Cueni, Mathias S. Weyland, and Carla Rohrer Bley
- Subjects
Canine Transitional Cell Carcinoma ,dogs ,medicine.drug_class ,medicine.medical_treatment ,Antineoplastic Agents ,Pharmacology ,630: Landwirtschaft ,Opioid receptor ,medicine ,Dog ,Animals ,Doxorubicin ,Flow cytometry ,µ‐receptor ,Cell proliferation ,Cancer ,Chemotherapy ,lcsh:Veterinary medicine ,µ-receptor ,General Veterinary ,Cell growth ,business.industry ,Animal ,Original Articles ,Buprenorphine ,Cell line, tumor ,Opioid ,Antineoplastic agent ,lcsh:SF600-1100 ,Original Article ,business ,Methadone ,medicine.drug - Abstract
Opioid receptor activation was shown to enhance the efficacy of anti‐neoplastic drugs in several human cancer cell lines. In these cell lines, doxorubicin increased the number of opioid receptors and methadone concurrently enhanced cellular doxorubicin uptake. Triggered through lay press and media, animal owners started to challenge veterinary oncologists with questions about methadone use in anti‐cancer therapy. Especially in veterinary medicine, where side effects of chemotherapy are tolerated to a lesser extent and hence smaller doses are given, agents potentiating chemotherapeutic agents would be an optimal approach to treatment. Canine transitional cell carcinoma cells (TCC, K9TCC), canine osteosarcoma cells (OSA, Abrams) and canine hemangiosarcoma cells (HSA, DAL‐4) were incubated with different combinations of methadone, buprenorphine and doxorubicin, in order to test inhibition of cell proliferation. Opioid receptor density was assessed with fluorescence‐activated cell sorting in drug native and doxorubicin pretreated cells. In TCC and OSA cell lines opioid receptor density increased after doxorubicin pretreatment. In combination treatment, however, we did not find significant potentiation of doxorubicin's inhibitory effect on proliferation in these cell lines. Neither was there a significant increase of the effect of doxorubicin when the opioids were added 24 hr before doxorubicin. Hence, we could not confirm the hypothesis that opioids increase the anti‐proliferative effect of the anti‐neoplastic drug doxorubicin in any of these canine tumour cell lines. The lack of effect on a cellular level does not warrant a clinical approach to use opioids together with doxorubicin in dogs with cancer., Triggered through lay press and media, animal owners started to challenge veterinary oncologists with questions about methadone use in anti‐cancer therapy. However, we could not confirm the hypothesis that opioids increase the anti‐proliferative effect of the anti‐neoplastic drug doxorubicin in any of these canine tumor cell lines. The lack of effect on a cellular level does not warrant a clinical approach to use opioids together with doxorubicin in dogs with cancer.
- Published
- 2020
- Full Text
- View/download PDF
13. Holistic View on Cell Survival and DNA Damage: How Model-Based Data Analysis Supports Exploration of Dynamics in Biological Systems
- Author
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Alke Petri-Fink, Rudolf Marcel Füchslin, Pauline Thumser-Henner, Carla Rohrer Bley, Stephan Scheidegger, Mathias S. Weyland, Marco Lattuada, Simone Ulzega, Katarzyna J. Nytko, University of Zurich, and Weyland, Mathias S
- Subjects
10253 Department of Small Animals ,DNA Repair ,Computer science ,Semantics (computer science) ,Model parameters ,030218 nuclear medicine & medical imaging ,0302 clinical medicine ,2604 Applied Mathematics ,2400 General Immunology and Microbiology ,Neoplasms ,11434 Center for Clinical Studies ,Tumor Stem Cell Assay ,Systems Biology ,Applied Mathematics ,Dynamics (mechanics) ,Contrast (statistics) ,General Medicine ,030220 oncology & carcinogenesis ,Modeling and Simulation ,Simulated annealing ,Comet Assay ,Approximate Bayesian computation ,Monte Carlo Method ,Algorithm ,Research Article ,Article Subject ,Cell Survival ,Computer applications to medicine. Medical informatics ,R858-859.7 ,610 Medicine & health ,Genetics and Molecular Biology ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Dogs ,1300 General Biochemistry, Genetics and Molecular Biology ,Modelling and Simulation ,Cell Line, Tumor ,Calibration ,Animals ,Humans ,Cell survival ,11077 Center for Applied Biotechnology and Molecular Medicine ,General Immunology and Microbiology ,572: Biochemie ,Radiotherapy Planning, Computer-Assisted ,Computational Biology ,Bayes Theorem ,Mathematical Concepts ,General Biochemistry ,2611 Modeling and Simulation ,DNA Damage - Abstract
In this work, a method is established to calibrate a model that describes the basic dynamics of DNA damage and repair. The model can be used to extend planning for radiotherapy and hyperthermia in order to include the biological effects. In contrast to “syntactic” models (e.g., describing molecular kinetics), the model used here describes radiobiological semantics, resulting in a more powerful model but also in a far more challenging calibration. Model calibration is attempted from clonogenic assay data (doses of 0–6 Gy) and from time-resolved comet assay data obtained within 6 h after irradiation with 6 Gy. It is demonstrated that either of those two sources of information alone is insufficient for successful model calibration, and that both sources of information combined in a holistic approach are necessary to find viable model parameters. Approximate Bayesian computation (ABC) with simulated annealing is used for parameter search, revealing two aspects that are beneficial to resolving the calibration problem: (1) assessing posterior parameter distributions instead of point-estimates and (2) combining calibration runs from different assays by joining posterior distributions instead of running a single calibration run with a combined, computationally very expensive objective function.
- Published
- 2020
14. Dynamic DNA damage and repair modelling : bridging the gap between experimental damage readout and model structure
- Author
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Weyland, Mathias, Thumser-Henner, Pauline, Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Scheidegger, Stephan, Füchslin, Rudolf Marcel, Weyland, Mathias, Thumser-Henner, Pauline, Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Scheidegger, Stephan, and Füchslin, Rudolf Marcel
- Abstract
In this work, a method is presented to map a set of experimentally obtained, time-resolved distributions to a dynamic model. Specifically, time-resolved comet assay readouts of cancer cells after application of ionizing radiation are mapped to the Multi-Hit-Repair model, a radiobiologically motivated dynamic model used to predict DNA damage and repair. Differential evolution is used for parameter-search to showcase the potential of this method, producing a prediction close to the experimental measurement. The results obtained from the parameter search are used to characterize aspects of the repair process. The method is compared to prior attempts of finding model parameters from dose-response curves, revealing that calibration is required to render the two comparable.
- Published
- 2020
15. Cell line-specific efficacy of thermoradiotherapy in human and canine cancer cells in vitro
- Author
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Nytko, Katarzina J., Thumser-Henner, Pauline, Weyland, Mathias S., Scheidegger, Stephan, Rohrer Bley, Carla, Nytko, Katarzina J., Thumser-Henner, Pauline, Weyland, Mathias S., Scheidegger, Stephan, and Rohrer Bley, Carla
- Abstract
Objective Aims were to investigate sensitivity of various human and canine cancer cell lines to hyperthermia and the influence of particular treatment conditions, and to analyze the DNA-damage response and mode of cell death in cell line radiosensitized by hyperthermia. Additionally, we were interested in the involvement of HSP70 in radiosensitization. Methods Radiosensitization by hyperthermia was determined in a panel of human and canine cancer cell lines using clonogenic cell survival assay, as well as levels of heat shock proteins (HSPs) using immunoblotting. The influence of the hyperthermia-radiotherapy time gap, different temperatures and the order of treatments on clonogenicity of hyperthermia-sensitive A549 cells was investigated. Additionally, DNA damage and cell death were assessed by Comet assay and an apoptosis/necrosis assay. Further we induced transient knockdown in A549 cells to test HSP70’s involvement in radiosensitization. Results Out of eight cell lines tested, only two (A549 and Abrams) showed significant decrease in clonogenic cell survival when pre-treated with hyperthermia at 42˚C. Strong induction of HSP70 upon thermoradiotherapy (HT-RT) treatment was found in all cell lines. Transient knockdown of HSP70 in A549 cells did not result in decrease of clonogenic cell survival in response to HT-RT. Conclusion Tumor cell-type, temperature and order of treatment play an important role in radiosensitization by hyperthermia. However, hyperthermia has limited potency to radiosensitize canine cancer cells grown in a 2D cell culture setting presented here. DNA damage and apoptosis/necrosis did not increase upon combined treatment and cytosolic levels of HSP70 appear not to play critical role in the radiosensitization of A549 cells.
- Published
- 2020
16. Holistic view on cell survival and DNA damage : how model-based data analysis supports exploration of dynamics in biological systems
- Author
-
Weyland, Mathias S., Thumser-Henner, Pauline, Nytko, Katarzyna J., Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Füchslin, Rudolf Marcel, Scheidegger, Stephan, Weyland, Mathias S., Thumser-Henner, Pauline, Nytko, Katarzyna J., Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Füchslin, Rudolf Marcel, and Scheidegger, Stephan
- Abstract
In this work, a method is established to calibrate a model that describes the basic dynamics of DNA damage and repair. The model can be used to extend planning for radiotherapy and hyperthermia in order to include the biological effects. In contrast to ``syntactic'' models (e.g. describing molecular kinetics), the model used here describes radiobiological semantics, resulting in a more powerful model but also in a far more challenging calibration. Model calibration is attempted from clonogenic assay data (doses of 0 -- 6 Gy) and from time-resolved comet assay data obtained within 6~h after irradiation with 6~Gy. It is demonstrated that either of those two sources of information alone is insufficient for successful model calibration, and that both sources of information combined in a holistic approach are necessary to find viable model parameters. Approximate Bayesian Computation (ABC) with simulated annealing is used for parameter search, revealing two aspects that are beneficial to resolving the calibration problem: (1) assessing posterior parameter distributions instead of point-estimates; (2) combining calibration runs from different assays by joining posterior distributions instead of running a single calibration run with a combined, computationally very expensive objective function.
- Published
- 2020
17. Holistic view on cell survival and DNA damage: how model-based data analysis supports exploration of dynamics in Biological systems
- Author
-
Weyland, Mathias S; https://orcid.org/0000-0001-6389-0029, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Füchslin, Rudolf M, Scheidegger, Stephan; https://orcid.org/0000-0002-2622-2918, Weyland, Mathias S; https://orcid.org/0000-0001-6389-0029, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Füchslin, Rudolf M, and Scheidegger, Stephan; https://orcid.org/0000-0002-2622-2918
- Abstract
In this work, a method is established to calibrate a model that describes the basic dynamics of DNA damage and repair. The model can be used to extend planning for radiotherapy and hyperthermia in order to include the biological effects. In contrast to “syntactic” models (e.g., describing molecular kinetics), the model used here describes radiobiological semantics, resulting in a more powerful model but also in a far more challenging calibration. Model calibration is attempted from clonogenic assay data (doses of 0–6 Gy) and from time-resolved comet assay data obtained within 6 h after irradiation with 6 Gy. It is demonstrated that either of those two sources of information alone is insufficient for successful model calibration, and that both sources of information combined in a holistic approach are necessary to find viable model parameters. Approximate Bayesian computation (ABC) with simulated annealing is used for parameter search, revealing two aspects that are beneficial to resolving the calibration problem: (1) assessing posterior parameter distributions instead of point-estimates and (2) combining calibration runs from different assays by joining posterior distributions instead of running a single calibration run with a combined, computationally very expensive objective function.
- Published
- 2020
18. Role of HSP70 in response to (thermo)radiotherapy: analysis of gene expression in canine osteosarcoma cells by RNA-seq
- Author
-
Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Russo, Giancarlo; https://orcid.org/0000-0003-0707-2640, Weyland, Mathias S; https://orcid.org/0000-0001-6389-0029, Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722, Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Russo, Giancarlo; https://orcid.org/0000-0003-0707-2640, Weyland, Mathias S; https://orcid.org/0000-0001-6389-0029, and Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722
- Abstract
Pre-treatment of tumors with hyperthermia is often used to increase the efficacy of radiotherapy. One of the main proteins induced in response to hyperthermia is heat shock protein 70 (HSP70). The aim of our study was to investigate up- and down-regulated genes in response to (thermo)radiotherapy in HSP70 proficient and deficient canine osteosarcoma cell line (Abrams), and functional role of HSP70 in the mechanism of thermoradiosensitization. Cells were transfected with negative control siRNA or siRNA targeting HSP70 and treated with hyperthermia (HT), radiotherapy (RT), and thermoradiotherapy (HTRT). RNA sequencing was used to analyze gene expression. Hyperthermia and thermoradiotherapy, but not radiotherapy alone, induced differential gene expression. We identified genes differentially expressed only in HSP70 knockdown (thus HSP70-dependent) cells in response to hyperthermia and thermoradiotherapy. Interestingly, cell proliferation but not clonogenicity and apoptosis/necrosis was affected by the HSP70 knockdown in response to thermoradiotherapy. The results suggest that HSP70 regulates expression of specific genes in response to hyperthermia and thermoradiotherapy. Further investigations into the role of specific genes regulated in a HSP70-dependent manner in response to thermoradiotherapy could pave a way into new, combinatorial treatment options for (canine) osteosarcoma and other cancer types.
- Published
- 2020
19. Mutations of BRCA2 in canine mammary tumors and their targeting potential in clinical therapy
- Author
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Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, and Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722
- Abstract
Dogs develop cancer spontaneously with age, with breed-specific risk underlying differences in genetics. Mammary tumors are reported as the most frequent neoplasia in intact female dogs. Their high prevalence in certain breeds suggests a genetic component, as it is the case in human familial breast cancer, distinctly in BRCA2-associated cancers. However, the molecular genetics of BRCA2 in the pathogenesis of canine cancer are still under investigation.Genetic variations of canine BRCA2 comprised single nucleotide polymorphisms, insertions and deletions. The BRCA2 level has been shown to be reduced in tumor gland samples, suggesting that low expression of BRCA2 is contributing to mammary tumor development in dogs. Additionally, specific variations of the BRCA2 gene affect RAD51 binding strength, critically damage the BRCA2-RAD51 binding and further provoke a defective repair. In humans, preclinical and clinical data revealed a synthetic lethality interaction between BRCA2 mutations and PARP inhibition. PARP inhibitors are successfully used to increase chemo- and radiotherapy sensitivity, although they are also associated with numerous side effects and acquired resistance. Cancer treatment of canine patients could benefit from increased chemo- and radiosensitivity, as their cancer therapy protocols usually include only low doses of drugs or radiation. Early investigations show tolerability of iniparib in dogs. PARP inhibitors also imply higher therapy costs and consequently are less likely to be accepted by pet owners.We summarized the current evidence of canine BRCA2 gene alterations and their association with mammary tumors. Mutations in the canine BRCA2 gene have the potential to be exploited in clinical therapy through the usage of PARP inhibitors. However, further investigations are needed before introducing PARP inhibitors in veterinary clinical practice.
- Published
- 2020
20. 32nd Annual Meeting of the European Society for Hyperthermic Oncology
- Author
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Mathias S. Weyland, Katarzyna J. Nytko, Carla Rohrer Bley, Pauline Thumser-Henner, and Stephan Scheidegger
- Subjects
0301 basic medicine ,business.industry ,Phased array ,Imaging phantom ,Compensation (engineering) ,Set (abstract data type) ,03 medical and health sciences ,030104 developmental biology ,Oncology ,Calibration ,Medicine ,Radiology, Nuclear Medicine and imaging ,Antenna (radio) ,Focus (optics) ,business ,Algorithm ,Communication channel - Abstract
Introduction In microwave hyperthermia (MW-HT), treatment planning determines the steering parameters for a phased array to yield appropriate tumor coverage and hot-spot suppression. In real HT systems, however, such arrays are subjected to mismatches, which might not be considered in the models used in treatment planning. While certain mismatches can be addressed via channel calibration, those occurring inside the array are more difficult to predict as they can vary during the treatment session itself. The effect of such mismatches can be as relevant as to disrupt the interference pattern. Objectives This contribution proposes self-calibration (SC) as a solution for real-time compensation of various types of mismatches, such as different cable lengths, manufacturing tolerances, patient misplacement and air bubbles in the water bolus. Two SC algorithms have been designed for use with applicator arrays of arbitrary shapes. Materials & Methods The algorithms are based on comparison of simulated and measured S-matrices of the phased array. The extra time delays caused by various mismatches at each channel are then compensated accordingly. The verification of both algorithms includes virtual and experimental models of our neck applicator used in a setup with a patient model and a muscle phantom. The accuracy has been evaluated numerically by comparing the ideal E-field distributions with those obtained by introducing a set of randomly distributed mismatches to the applicator model. The proof-of-principle has then been demonstrated experimentally by means of temperature measurements. Results Results indicate that at least one of the tested SC algorithms converge to the correct compensation solution with performances largely comparable and sometimes even exceeding those typical of an external calibration. Antenna offsets of ±5 mm and air bubbles about 1 cm big are well handled. Improvements can be done with respect to patient misplacement, which is compensated by the algorithm up to ±1 mm. Experimental results confirm the ability of the algorithm to restore focus shape. Conclusion Self-calibration can be a valid solution for mismatch compensation in MW-HT. The potential real-time application of SC makes it a desirable candidate for use in clinical settings.
- Published
- 2018
21. Holistic View on Cell Survival and DNA Damage: How Model-Based Data Analysis Supports Exploration of Dynamics in Biological Systems
- Author
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Weyland, Mathias S., primary, Thumser-Henner, Pauline, additional, Nytko, Katarzyna J., additional, Rohrer Bley, Carla, additional, Ulzega, Simone, additional, Petri-Fink, Alke, additional, Lattuada, Marco, additional, Füchslin, Rudolf M., additional, and Scheidegger, Stephan, additional
- Published
- 2020
- Full Text
- View/download PDF
22. Methadone does not potentiate the effect of doxorubicin in canine tumour cell lines
- Author
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Cueni, Claudia, primary, Nytko, Katarzyna J., additional, Thumser‐Henner, Pauline, additional, Weyland, Mathias S., additional, and Rohrer Bley, Carla, additional
- Published
- 2020
- Full Text
- View/download PDF
23. Cell line-specific efficacy of thermoradiotherapy in human and canine cancer cells in vitro
- Author
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Mathias S. Weyland, Katarzyna J. Nytko, Stephan Scheidegger, Carla Rohrer Bley, Pauline Thumser-Henner, University of Zurich, Thamm, Douglas H, and Nytko, Katarzyna J
- Subjects
0301 basic medicine ,10253 Department of Small Animals ,Cancer Treatment ,Apoptosis ,Pathology and Laboratory Medicine ,Biochemistry ,Heat Shock Response ,615: Pharmakologie und Therapeutik ,0302 clinical medicine ,Medicine and Health Sciences ,11434 Center for Clinical Studies ,Cellular Stress Responses ,Multidisciplinary ,Cell Death ,630 Agriculture ,Chemistry ,General Medicine ,Nucleic acids ,Radiation therapy ,Oncology ,Cell Processes ,030220 oncology & carcinogenesis ,Medicine ,General Agricultural and Biological Sciences ,Research Article ,Hyperthermia ,Clinical Oncology ,Programmed cell death ,Science ,Immunoblotting ,Molecular Probe Techniques ,Genetics and Molecular Biology ,1100 General Agricultural and Biological Sciences ,Research and Analysis Methods ,Transfection ,03 medical and health sciences ,Signs and Symptoms ,Gentamicin protection assay ,Diagnostic Medicine ,1300 General Biochemistry, Genetics and Molecular Biology ,medicine ,Genetics ,Heat shock ,Molecular Biology Techniques ,Molecular Biology ,A549 cell ,1000 Multidisciplinary ,Biology and life sciences ,11077 Center for Applied Biotechnology and Molecular Medicine ,DNA ,Cell Biology ,medicine.disease ,Comet assay ,030104 developmental biology ,Cell culture ,General Biochemistry ,Cancer research ,DNA damage ,570 Life sciences ,biology ,Clinical Medicine - Abstract
ObjectiveAims were to investigate sensitivity of various human and canine cancer cell lines to hyperthermia and the influence of particular treatment conditions, and to analyze the DNA-damage response and mode of cell death in cell line radiosensitized by hyperthermia. Additionally, we were interested in the involvement of HSP70 in radiosensitization.MethodsRadiosensitization by hyperthermia was determined in a panel of human and canine cancer cell lines using clonogenic cell survival assay, as well as levels of heat shock proteins (HSPs) using immunoblotting. The influence of the hyperthermia-radiotherapy time gap, different temperatures and the order of treatments on clonogenicity of hyperthermia-sensitive A549 cells was investigated. Additionally, DNA damage and cell death were assessed by Comet assay and an apoptosis/necrosis assay. Further we induced transient knockdown in A549 cells to test HSP70's involvement in radiosensitization.ResultsOut of eight cell lines tested, only two (A549 and Abrams) showed significant decrease in clonogenic cell survival when pre-treated with hyperthermia at 42°C. Strong induction of HSP70 upon thermoradiotherapy (HT-RT) treatment was found in all cell lines. Transient knockdown of HSP70 in A549 cells did not result in decrease of clonogenic cell survival in response to HT-RT.ConclusionTumor cell-type, temperature and order of treatment play an important role in radiosensitization by hyperthermia. However, hyperthermia has limited potency to radiosensitize canine cancer cells grown in a 2D cell culture setting presented here. DNA damage and apoptosis/necrosis did not increase upon combined treatment and cytosolic levels of HSP70 appear not to play critical role in the radiosensitization of A549 cells.
- Published
- 2019
24. Dynamic DNA damage and repair modelling : bridging the gap between experimental damage readout and model structure
- Author
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Alke Petri-Fink, Carla Rohrer Bley, Mathias S. Weyland, Rudolf Marcel Füchslin, Pauline Thumser-Henner, Marco Lattuada, Stephan Scheidegger, and Simone Ulzega
- Subjects
0301 basic medicine ,Structure (mathematical logic) ,Work (thermodynamics) ,Bridging (networking) ,DNA damage ,Computer science ,572: Biochemie ,Model parameters ,Dynamic DNA damage/repair model ,Comet assay ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Comet assay (single cell gel electrophoresis) ,030220 oncology & carcinogenesis ,Differential evolution ,Calibration ,Biological system ,Computational medicine - Abstract
Oral presentation In this work, a method is presented to map a set of experimentally obtained, time-resolved distributions to a dynamic model. Specifically, time-resolved comet assay readouts of cancer cells after application of ionizing radiation are mapped to the Multi-Hit-Repair model, a radiobiologically motivated dynamic model used to predict DNA damage and repair. Differential evolution is used for parameter-search to showcase the potential of this method, producing a prediction close to the experimental measurement. The results obtained from the parameter search are used to characterize aspects of the repair process. The method is compared to prior attempts of finding model parameters from dose-response curves, revealing that calibration is required to render the two comparable.
- Published
- 2019
25. Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure
- Author
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Weyland, Mathias, Thumser-Henner, Pauline, Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Scheidegger, Stephan, Füchslin, Rudolf Marcel, Weyland, Mathias, Thumser-Henner, Pauline, Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Scheidegger, Stephan, and Füchslin, Rudolf Marcel
- Abstract
Oral presentation, In this work, a method is presented to map a set of experimentally obtained, time-resolved distributions to a dynamic model. Specifically, time-resolved comet assay readouts of cancer cells after application of ionizing radiation are mapped to the Multi-Hit-Repair model, a radiobiologically motivated dynamic model used to predict DNA damage and repair. Differential evolution is used for parameter-search to showcase the potential of this method, producing a prediction close to the experimental measurement. The results obtained from the parameter search are used to characterize aspects of the repair process. The method is compared to prior attempts of finding model parameters from dose-response curves, revealing that calibration is required to render the two comparable.
- Published
- 2019
26. Cell line-specific efficacy of thermoradiotherapy in human and canine cancer cells in vitro
- Author
-
Thamm, Douglas H, Thamm, D H ( Douglas H ), Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Weyland, Mathias S; https://orcid.org/0000-0001-6389-0029, Scheidegger, Stephan, Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722, Thamm, Douglas H, Thamm, D H ( Douglas H ), Nytko, Katarzyna J; https://orcid.org/0000-0001-8148-6329, Thumser-Henner, Pauline; https://orcid.org/0000-0001-8817-2592, Weyland, Mathias S; https://orcid.org/0000-0001-6389-0029, Scheidegger, Stephan, and Rohrer Bley, Carla; https://orcid.org/0000-0002-5733-2722
- Abstract
OBJECTIVE: Aims were to investigate sensitivity of various human and canine cancer cell lines to hyperthermia and the influence of particular treatment conditions, and to analyze the DNA-damage response and mode of cell death in cell line radiosensitized by hyperthermia. Additionally, we were interested in the involvement of HSP70 in radiosensitization. METHODS: Radiosensitization by hyperthermia was determined in a panel of human and canine cancer cell lines using clonogenic cell survival assay, as well as levels of heat shock proteins (HSPs) using immunoblotting. The influence of the hyperthermia-radiotherapy time gap, different temperatures and the order of treatments on clonogenicity of hyperthermia-sensitive A549 cells was investigated. Additionally, DNA damage and cell death were assessed by Comet assay and an apoptosis/necrosis assay. Further we induced transient knockdown in A549 cells to test HSP70's involvement in radiosensitization. RESULTS: Out of eight cell lines tested, only two (A549 and Abrams) showed significant decrease in clonogenic cell survival when pre-treated with hyperthermia at 42°C. Strong induction of HSP70 upon thermoradiotherapy (HT-RT) treatment was found in all cell lines. Transient knockdown of HSP70 in A549 cells did not result in decrease of clonogenic cell survival in response to HT-RT. CONCLUSION: Tumor cell-type, temperature and order of treatment play an important role in radiosensitization by hyperthermia. However, hyperthermia has limited potency to radiosensitize canine cancer cells grown in a 2D cell culture setting presented here. DNA damage and apoptosis/necrosis did not increase upon combined treatment and cytosolic levels of HSP70 appear not to play critical role in the radiosensitization of A549 cells.
- Published
- 2019
27. Extracting information about cellular repair processes after hyperthermia – radiotherapy by model-based data analysis – ambiguities in survival prediction as a challenge?
- Author
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Weyland, Mathias, Thumser-Henner, Pauline, Nytko, KJ, Rohrer Bley, Carla, and Scheidegger, Stephan
- Subjects
Radiation therapy ,615: Pharmakologie und Therapeutik ,Comet assay - Published
- 2018
28. Cell line-specific efficacy of thermoradiotherapy in human and canine cancer cells in vitro
- Author
-
Nytko, Katarzyna J., primary, Thumser-Henner, Pauline, additional, Weyland, Mathias S., additional, Scheidegger, Stephan, additional, and Bley, Carla Rohrer, additional
- Published
- 2019
- Full Text
- View/download PDF
29. Holistic view on cell survival and dna damage: how model-based data analysis supports exploration of dynamics in biological systems
- Author
-
Weyland, Mathias S., Thumser-Henner, Pauline, Nytko, Katarzyna J., Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Füchslin, Rudolf M., Scheidegger, Stephan, Weyland, Mathias S., Thumser-Henner, Pauline, Nytko, Katarzyna J., Rohrer Bley, Carla, Ulzega, Simone, Petri-Fink, Alke, Lattuada, Marco, Füchslin, Rudolf M., and Scheidegger, Stephan
- Abstract
In this work, a method is established to calibrate a model that describes the basic dynamics of DNA damage and repair. The model can be used to extend planning for radiotherapy and hyperthermia in order to include the biological effects. In contrast to “syntactic” models (e.g., describing molecular kinetics), the model used here describes radiobiological semantics, resulting in a more powerful model but also in a far more challenging calibration. Model calibration is attempted from clonogenic assay data (doses of 0–6 Gy) and from time-resolved comet assay data obtained within 6 h after irradiation with 6 Gy. It is demonstrated that either of those two sources of information alone is insufficient for successful model calibration, and that both sources of information combined in a holistic approach are necessary to find viable model parameters. Approximate Bayesian computation (ABC) with simulated annealing is used for parameter search, revealing two aspects that are beneficial to resolving the calibration problem: (1) assessing posterior parameter distributions instead of point- estimates and (2) combining calibration runs from different assays by joining posterior distributions instead of running a single calibration run with a combined, computationally very expensive objective function.
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