25 results on '"Thuan NH"'
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2. Advances in glycosyltransferase-mediated glycodiversification of small molecules.
- Author
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Thuan NH, Huong QTT, Lam BD, Tam HT, Thu PT, Canh NX, and Tatipamula VB
- Abstract
Currently, numerous glycosides have been synthesized and used in clinical applications, neutraceuticals, cosmetics, and food processing. Structurally, a glycoside is composed of aglycone attaching to one or several sugar moieties so-called glycone. It is found that biochemical or biopharmaceutical properties of glycoside are mainly determined by its sugar part and thereby alternation of this glycone resulting in novel structure and characteristics as well. The use of traditional production methods of glycosides such as direct extraction and purification from plants, animals, or microorganisms is very challenging (laborious, time-consuming, technique, high price, low yield, etc.). Alternatively, the use of enzymatic methods for the biosynthesis of glycosides has become a highly promising tool. Particularly, the diverse structure of glycosides can be obtained using the promiscuous catalytic activity of glycosyltransferases (GT) mined from bioresources (plants, fungi, microorganisms, etc.). In addition, the exploration of GT catalytic promiscuity toward diverse aglycones, and glycones has indeed been interesting and played a key role in the production of novel glycosides. This review described the recent advances in glycosyltransferase-mediated glycodiversification of small molecules (flavonoids, steroids, terpenoids, etc.). Mostly, references were collected from 2014 to 2023., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest in the publication., (© King Abdulaziz City for Science and Technology 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
- Published
- 2024
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3. Configurational analysis of conditions influencing customers' channel switching intention in omnichannel retailing: a fuzzy-set analysis.
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Van Nguyen AT, Halibas AS, McClelland R, and Thuan NH
- Abstract
This research examined the interplay among personal factors, namely channel lock-in, cross-channel synergy, attribute-based decision making (ADM); environmental factors, namely others' past switching behaviour (OPB), pressure to switch from others (PSO); and behavioural factors, namely perceived self-efficacy and perception on facilitating conditions as antecedents to customers' channel switching intention in an omnichannel context. Drawing on the complexity theory and set theory, we applied configurational analysis using the fuzzy-set Qualitative Comparative Analysis. The result of the analysis indicated two (2) sufficient configurations that led to an intention to switch channels. Both configurations contained ADM, OPB, and PSO conditions that highlight the importance of personal factors and environmental factors needed for the presence of an intention to switch channels. However, no sufficient configurations were obtained that indicate an absence of intention to switch channels. This study challenges theoretical underpinnings by demonstrating that omnichannel channel-switching behaviours can be explained from a configurational perspective. The configurations produced by this study can serve as a basis for researchers who plan to conduct asymmetric modelling of customers' channel-switching behaviour in an omnichannel context. Finally, this paper suggests omnichannel retail strategies and management as informed by these configurations., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© The Author(s) 2023.)
- Published
- 2023
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4. End-to-end deep learning model for segmentation and severity staging of anterior cruciate ligament injuries from MRI.
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Dung NT, Thuan NH, Van Dung T, Van Nho L, Tri NM, Vy VPT, Hoang LN, Phat NT, Chuong DA, and Dang LH
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- Male, Humans, Female, Adult, Retrospective Studies, Magnetic Resonance Imaging methods, Knee Joint, Rupture, Sensitivity and Specificity, Anterior Cruciate Ligament Injuries diagnostic imaging, Anterior Cruciate Ligament Injuries surgery, Deep Learning
- Abstract
Purpose: The purpose of this study was to develop a semi-supervised segmentation and classification deep learning model for the diagnosis of anterior cruciate ligament (ACL) tears on MRI based on a semi-supervised framework, double-linear layers U-Net (DCLU-Net)., Materials and Methods: A total of 297 participants who underwent of total of 303 MRI examination of the knee with fat-saturated proton density (PD) fast spin-echo (FSE) sequence in the sagittal plane were included. There were 214 men and 83 women, with a mean age of 37.46 ± 1.40 (standard deviation) years (range: 29-44 years). Of these, 107 participants had intact ACL (36%), 98 had partially torn ACL (33%), and 92 had fully ruptured ACL (31%). The DCLU-Net was combined with radiomic features for enhancing performances in the diagnosis of ACL tear. The different evaluation metrics for both classification (accuracy, sensitivity, accuracy) and segmentation (mean Dice similarity coefficient and root mean square error) were compared individually for each image class across the three phases of the model, with each value being compared to its respective value from the previous phase. Findings at arthroscopic knee surgery were used as the standard of reference., Results: With the addition of radiomic features, the final model yielded accuracies of 90% (95% CI: 83-92), 82% (95% CI: 73-86), and 92% (95% CI: 87-94) for classifying ACL as intact, partially torn and fully ruptured, respectively. The DCLU-Net achieved mean Dice similarity coefficient and root mean square error of 0.78 (95% CI: 0.71-0.80) and 0.05 (95% CI: 0.06-0.07), respectively, when segmenting the three ACL conditions with pseudo data (P < 0.001)., Conclusion: A dual-modules deep learning model with segmentation and classification capabilities was successfully developed. In addition, the use of semi-supervised techniques significantly reduced the amount of manual segmentation data without compromising performance., Competing Interests: Declaration of Competing Interest None., (Copyright © 2022 Société française de radiologie. Published by Elsevier Masson SAS. All rights reserved.)
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- 2023
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5. Metabolic engineering and optimization of Escherichia coli co-culture for the de novo synthesis of genkwanin.
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Thuan NH, Tatipamula VB, Trung NT, and Van Giang N
- Abstract
Genkwanin has various significant roles in nutrition, biomedicine, and pharmaceutical biology. Previously, this compound was chiefly produced by plant-originated extraction or chemical synthesis. However, due to increasing concern and demand for safe food and environmental issues, the biotechnological production of genkwanin and other bioactive compounds based on safe, cheap, and renewable substrates has gained much interest. This paper described recombinant Escherichia coli-based co-culture engineering that was reconstructed for the de novo production of genkwanin from d-glucose. The artificial genkwanin biosynthetic chain was divided into 2 modules in which the upstream strain contained the genes for synthesizing p-coumaric acid from d-glucose, and the downstream module contained a gene cluster that produced the precursor apigenin and the final product, genkwanin. The Box-Behnken design, a response surface methodology, was used to empirically model the production of genkwanin and optimize its productivity. As a result, the application of the designed co-culture improved the genkwanin production by 48.8 ± 1.3 mg/L or 1.7-fold compared to the monoculture. In addition, the scale-up of genkwanin bioproduction by a bioreactor resulted in 68.5 ± 1.9 mg/L at a 48 hr time point. The combination of metabolic engineering and fermentation technology was therefore a very efficient and applicable approach to enhance the production of other bioactive compounds., (© The Author(s) 2023. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology.)
- Published
- 2023
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6. Bioproduction of eriodictyol by Escherichia coli engineered co-culture.
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Thuan NH, Tatipamula VB, Viet TT, Tien NQD, and Loc NH
- Subjects
- Coculture Techniques, Glucose, Metabolic Engineering, Escherichia coli genetics, Flavanones pharmacology
- Abstract
Eriodictyol (ED) is a flavonoid in the flavanones subclass. It is abundantly present in a wide range of medicinal plants, citrus fruits, and vegetables. In addition, ED owns numerous importantly medicinal bioactivities such as inhibition of proliferation, metastasis and induction of apoptosis in glioma cells or inhibition of glioblastoma migration, and invasion. This study described the heterologous production of ED by E. coli based co-culture engineering system from the simple carbon substrate D-glucose. Two E. coli strains were engineered and functioned as constitutive components of biological system. Specifically, the first strain (upstream module) contained genes for synthesis of p-coumaric acid (pCA) from D-glucose. And, the second strain (downstream module) consisted of genes for the synthesis of ED from pCA. The highest yield in ED production was achieved 51.5 ± 0.4 mg/L using stepwise optimal culture conditions, while monoculture was achieved 21.3 ± 0.2 mg/L only. In conclusion, co-culture was the most efficient alternative approach for the synthesis of ED and other natural products., (© 2022. The Author(s), under exclusive licence to Springer Nature B.V.)
- Published
- 2022
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7. Recent advances in microbial co-culture for production of value-added compounds.
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Thuan NH, Tatipamula VB, Canh NX, and Van Giang N
- Abstract
Micro-organisms have often been used to produce bioactive compounds as antibiotics, antifungals, and anti-tumors, etc. due to their easy and applicable culture, genetic manipulation, and extraction, etc. Mainly, microbial mono-cultures have been applied to produce value-added compounds and gotten numerous valuable results. However, mono-culture also has several complicated problems, such as metabolic burdens affecting the growth and development of the host, leading to a decrease in titer of the target compound. To circumvent those limitations, microbial co-culture has been technically developed and gained much interest compared to mono-culture. For example, co-culture simplifies the design of artificial biosynthetic pathways and restricts the recombinant host's metabolic burden, causing increased titer of desired compounds. This paper summarizes the recent advanced progress in applying microbial platform co-culture to produce natural products, such as flavonoid, terpenoid, alkaloid, etc. Furthermore, importantly different strategies for enhancing production, overcoming the metabolic burdens, building autonomous modulation of cell growth rate and culture composition in response to a quorum-sensing signal, etc., were also described in detail., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest in the publication., (© King Abdulaziz City for Science and Technology 2022.)
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- 2022
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8. Bioassay-guided isolation of antimycobacterial substances from the traditionally used lichen Cladonia pyxidata (L.) Hoffm.
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Thuan NH, Polimati H, Alluri R, and Tatipamula VB
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The aim of the present study is to provide a scientific rationale for the folklore usage of Cladonia pyxidata (L.) Hoffm. in treating tuberculosis (Tb). Through bioassay-guided isolation, antimycobacterial metabolites were isolated from under-investigated lichen C. pyxidata and examined against M.t H37Ra and six MDR strains. Further, the cytotoxicity of all isolated metabolites was evaluated on THP-1 macrophages. Bioassay-guided isolation of acetone extract of C. pyxidata yielded four metabolites, namely usnic acid, atranorin, barbatic acid, and fumarprotocetraric acid. Among those, the MIC values of usnic acid and fumarprotocetraric acid showed more effective in inhibiting the growth of six MDR strains, compared to first-line drug rifampicin. In addition, the 50% inhibitory concentration values of these two compounds on THP-1 were found to be far higher than MIC values against tested Tb strains, indicating that THP-1 macrophages were not harmfully affected at concentrations that were effective against M.t and MDR strains. The results exposed the traditional use of C. pyxidata for treating Tb, and the key metabolites were found to be usnic acid and fumarprotocetraric acid. The current study lends the first evidence for the presence of antimycobacterial compounds in C. pyxidata ., Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-022-03159-6., Competing Interests: Conflict of interestsThe authors declare that they have no conflict of interest in the publication., (© King Abdulaziz City for Science and Technology 2022.)
- Published
- 2022
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9. Advances in biochemistry and the biotechnological production of taxifolin and its derivatives.
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Thuan NH, Shrestha A, Trung NT, Tatipamula VB, Van Cuong D, Canh NX, Van Giang N, Kim TS, Sohng JK, and Dhakal D
- Subjects
- Antioxidants chemistry, Flavonoids, Silybum marianum genetics, Silybum marianum metabolism, Quercetin analogs & derivatives, Quercetin chemistry
- Abstract
Taxifolin (dihydroquercetin) and its derivatives are medicinally important flavanonols with a wide distribution in plants. These compounds have been isolated from various plants, such as milk thistle, onions, french maritime, and tamarind. In general, they are commercially generated in semisynthetic forms. Taxifolin and related compounds are biosynthesized via the phenylpropanoid pathway, and most of the biosynthetic steps have been functionally characterized. The knowledge gained through the detailed investigation of their biosynthesis has provided the foundation for the reconstruction of biosynthetic pathways. Plant- and microbial-based platforms are utilized for the expression of such pathways for generating taxifolin-related compounds, either by whole-cell biotransformation or through reconfiguration of the genetic circuits. In this review, we summarize recent advances in the biotechnological production of taxifolin and its derivatives., (© 2021 International Union of Biochemistry and Molecular Biology, Inc.)
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- 2022
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10. Acylated flavonoid glycosides from Barringtonia racemosa .
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Van QTT, Vien LT, Hanh TTH, Huong PTT, Cuong NT, Thao NP, Thuan NH, Dang NH, Thanh NV, Cuong NX, Nam NH, Kiem PV, and Minh CV
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- Acylation, Animals, Glycosides chemistry, Glycosides pharmacology, Lipopolysaccharides chemistry, Lipopolysaccharides pharmacology, Magnetic Resonance Spectroscopy, Mass Spectrometry, Mice, Molecular Structure, Nitric Oxide metabolism, Plant Extracts chemistry, Plant Leaves chemistry, RAW 264.7 Cells, Barringtonia chemistry, Flavonoids chemistry, Flavonoids pharmacology
- Abstract
Using various chromatographic separations, three new acylated flavonoid glycosides, namely barringosides G-I ( 1 - 3 ), were isolated from the water-soluble extract of Barringtonia racemosa branches and leaves. The structure elucidation was performed by extensive analysis of the 1D and 2D NMR and HR-QTOF-MS data. Of the isolated compounds, barringoside I ( 3 ) showed moderate inhibitory effects on LPS-induced NO production in RAW264.7 cells with an IC
50 of 52.48 ± 1.04 µM.- Published
- 2020
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11. Recent Advances in Exploration and Biotechnological Production of Bioactive Compounds in Three Cyanobacterial Genera: Nostoc, Lyngbya , and Microcystis .
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Thuan NH, An TT, Shrestha A, Canh NX, Sohng JK, and Dhakal D
- Abstract
Cyanobacteria , are only Gram-negative bacteria with the capacity of oxygenic photosynthesis, so termed as "Cyanophyta" or "blue-green algae." Their habitat is ubiquitous, which includes the diverse environments, such as soil, water, rock and other organisms (symbiosis, commensalism, or parasitism, etc.,). They are characterized as prominent producers of numerous types of important compounds with anti-microbial, anti-viral, anti-inflammatory and anti-tumor properties. Among the various cyanobacterial genera, members belonging to genera Nostoc, Lyngbya , and Microcystis possess greater attention. The major reason for that is the strains belonging to these genera produce the compounds with diverse activities/structures, including compounds in preclinical and/or clinical trials (cryptophycin and curacin), or the compounds retaining unique activities such as protease inhibitor (micropeptins and aeruginosins). Most of these compounds were tested for their efficacy and mechanism of action(MOA) through in vitro and/or in vivo studies. Recently, the advances in culture techniques of these cyanobacteria, and isolation, purification, and chromatographic analysis of their compounds have revealed insurmountable novel bioactive compounds from these cyanobacteria. This review provides comprehensive update on the origin, isolation and purification methods, chemical structures and biological activities of the major compounds from Nostoc, Lyngbya , and Microcystis . In addition, multi-omics approaches and biotechnological production of compounds from selected cyanobacterial genera have been discussed.
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- 2019
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12. Metabolic engineering of Escherichia coli for the production of isoflavonoid-4'-O-methoxides and their biological activities.
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Koirala N, Pandey RP, Thuan NH, Ghimire GP, Jung HJ, Oh TJ, and Sohng JK
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- Antineoplastic Agents chemistry, Cell Proliferation drug effects, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Escherichia coli chemistry, Human Umbilical Vein Endothelial Cells drug effects, Humans, Isoflavones chemistry, Methanol chemistry, Methanol metabolism, Molecular Structure, Structure-Activity Relationship, Tumor Cells, Cultured, Antineoplastic Agents metabolism, Antineoplastic Agents pharmacology, Escherichia coli metabolism, Isoflavones biosynthesis, Isoflavones pharmacology, Metabolic Engineering, Methanol pharmacology
- Abstract
Isoflavonoid representatives such as genistein and daidzein are highly potent anticancer, antibacterial, and antioxidant agents. It have been demonstrated that methylation of flavonoids enhanced the transporting ability, which lead to facilitated absorption and greatly increased bioavailability. In this paper, genetically engineered Escherichia coli was reconstructed by harboring E. coli K12-derived metK encoding S-adenosine-l-methionine (SAM) synthase (accession number: K02129) for enhancement of SAM as a precursor and Streptomyces avermitilis originated SaOMT2 (O-methyltransferase, accession number: NP_823558) for methylation of daidzein and genistein as preferred substrates. The formation of desired products via biotransformation including 4'-O-methyl-genistein and 4'-O-methyl-daidzein was confirmed individually by using chromatographical methods such as high-performance liquid chromatography, liquid chromatography/time-of-flight/mass spectrometry (LC-TOF-MS), and nuclear magnetic resonance (NMR), and NMR (
1 H and13 C). Furthermore, substrates concentration, incubation time, and media parameters were optimized using flask culture. Finally, the most fit conditions were applied for fed-batch fermentation with scale-up to 3 L (working volume) to obtain the maximum yield of the products including 164.25 µM (46.81 mg/L) and 382.50 µM (102.88 mg/L) for 4'-O-methyl genistein and 4'-O-methyl daidzein, respectively. In particular, potent inhibitory activities of those isoflavonoid methoxides against the growth of cancer line (B16F10, AGS, and HepG2) and human umbilical vein endothelial cells were investigated and demonstrated. Taken together, this research work described the production of isoflavonoid-4'-O-methoxides by E. coli engineering, improvement of production, characterization of produced compounds, and preliminary in vitro biological activities of the flavonoids being manufactured., (© 2015 International Union of Biochemistry and Molecular Biology, Inc.)- Published
- 2019
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13. An auto-inducible phosphate-controlled expression system of Bacillus licheniformis.
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Trung NT, Hung NM, Thuan NH, Canh NX, Schweder T, and Jürgen B
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- 6-Phytase metabolism, Genes, Bacterial, Phytic Acid metabolism, Promoter Regions, Genetic, 6-Phytase genetics, Bacillus licheniformis genetics, Bacillus licheniformis metabolism, Gene Expression Regulation, Bacterial, Phosphates metabolism
- Abstract
Background: A promoter that drives high-level, long-term expression of the target gene under substrate limited growth conditions in the absence of an artificial inducer would facilitate the efficient production of heterologous proteins at low cost. A novel phosphate-regulated expression system was constructed using the promoter of the phytase encoding gene phyL from Bacillus licheniformis for the overexpression of proteins in this industrially relevant host., Results: It is shown that the phyL promoter enables a strong overexpression of the heterologous genes amyE and xynA in B. licheniformis when cells were subjected to phosphate limitation. Whether B. licheniformis can use phytate as an alternative phosphate source and how this substrate influences the PphyL controlled gene expression under growth conditions with limited inorganic phosphate concentrations were also investigated. It is shown that B. licheniformis cells are able to use sodium phytate as alternative phosphate source. The addition of small amounts of sodium phytate (≤ 5 mM) to the growth medium resulted in a strong induction and overexpression of both model genes in B. licheniformis cells under phosphate limited growth conditions., Conclusions: The PphyL controlled expression of the investigated heterologous genes in B. licheniformis is strongly auto-induced under phosphate limited conditions. The proposed PphyL expression system enables an overexpression of target genes in B. licheniformis under growth conditions, which can be easily performed in a fed-batch fermentation process.
- Published
- 2019
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14. Escherichia coli modular coculture system for resveratrol glucosides production.
- Author
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Thuan NH, Trung NT, Cuong NX, Van Cuong D, Van Quyen D, and Malla S
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- Batch Cell Culture Techniques, Bioreactors, Biosynthetic Pathways genetics, Biosynthetic Pathways physiology, Biotransformation, Coumaric Acids metabolism, DNA, Bacterial, Escherichia coli enzymology, Escherichia coli genetics, Escherichia coli growth & development, Genetic Vectors genetics, Glucosides chemistry, Glucosides metabolism, Glucosyltransferases, Metabolic Engineering, Resveratrol, Stilbenes chemistry, Temperature, Coculture Techniques methods, Escherichia coli metabolism, Fermentation, Glucosides biosynthesis, Stilbenes metabolism
- Abstract
In bio-based fermentation, the overall bioprocess efficiency is significantly affected by the metabolic burden associated with the expression of complete biosynthetic pathway as well as precursor and cofactor generating enzymes into a single microbial cell. To attenuate such burden by compartmentalizing the enzyme expression, recently synthetic biologists have used coculture or poly-culture techniques for biomolecules synthesis. In this paper, coculture system of two metabolically engineered Escherichia coli populations were employed which comprises upstream module expressing two enzymes converting para-coumaric acid into resveratrol and the downstream module expressing glucosyltransferase to convert the resveratrol into its glucosidated forms; polydatin and resveratroloside. Upon optimization of the initial inoculum ratio of two E. coli populations, 92 mg resveratrol glucosides/L (236 µM) was produced i.e. achieving 84% bioconversion from 280 µM of p-coumaric acid in 60 h by 3 L fed batch fermentor. This is the report of applying coculture system to produce resveratrol glucosides by expressing the aglycone formation pathway and sugar dependent pathway into two different cells.
- Published
- 2018
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15. Genome-guided exploration of metabolic features of Streptomyces peucetius ATCC 27952: past, current, and prospect.
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Thuan NH, Dhakal D, Pokhrel AR, Chu LL, Van Pham TT, Shrestha A, and Sohng JK
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- Antibiotics, Antineoplastic metabolism, Daunorubicin metabolism, Doxorubicin metabolism, Streptomyces enzymology, Biotechnology trends, Genome, Bacterial genetics, Streptomyces genetics, Streptomyces metabolism
- Abstract
Streptomyces peucetius ATCC 27952 produces two major anthracyclines, doxorubicin (DXR) and daunorubicin (DNR), which are potent chemotherapeutic agents for the treatment of several cancers. In order to gain detailed insight on genetics and biochemistry of the strain, the complete genome was determined and analyzed. The result showed that its complete sequence contains 7187 protein coding genes in a total of 8,023,114 bp, whereas 87% of the genome contributed to the protein coding region. The genomic sequence included 18 rRNA, 66 tRNAs, and 3 non-coding RNAs. In silico studies predicted ~ 68 biosynthetic gene clusters (BCGs) encoding diverse classes of secondary metabolites, including non-ribosomal polyketide synthase (NRPS), polyketide synthase (PKS I, II, and III), terpenes, and others. Detailed analysis of the genome sequence revealed versatile biocatalytic enzymes such as cytochrome P450 (CYP), electron transfer systems (ETS) genes, methyltransferase (MT), glycosyltransferase (GT). In addition, numerous functional genes (transporter gene, SOD, etc.) and regulatory genes (afsR-sp, metK-sp, etc.) involved in the regulation of secondary metabolites were found. This minireview summarizes the genome-based genome mining (GM) of diverse BCGs and genome exploration (GE) of versatile biocatalytic enzymes, and other enzymes involved in maintenance and regulation of metabolism of S. peucetius. The detailed analysis of genome sequence provides critically important knowledge useful in the bioengineering of the strain or harboring catalytically efficient enzymes for biotechnological applications.
- Published
- 2018
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16. Engineering co-culture system for production of apigetrin in Escherichia coli.
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Thuan NH, Chaudhary AK, Van Cuong D, and Cuong NX
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- Acyltransferases metabolism, Chemistry, Pharmaceutical, Chromatography, High Pressure Liquid, Coenzyme A Ligases metabolism, Coumaric Acids, DNA, Recombinant, Escherichia coli genetics, Isomerases metabolism, Mixed Function Oxygenases metabolism, Plasmids metabolism, Propionates, Spectrometry, Mass, Electrospray Ionization, Temperature, Apigenin biosynthesis, Coculture Techniques, Escherichia coli metabolism, Industrial Microbiology, Metabolic Engineering
- Abstract
Microbial cells have extensively been utilized to produce value-added bioactive compounds. Based on advancement in protein engineering, DNA recombinant technology, genome engineering, and metabolic remodeling, the microbes can be re-engineered to produce industrially and medicinally important platform chemicals. The emergence of co-culture system which reduces the metabolic burden and allows parallel optimization of the engineered pathway in a modular fashion restricting the formation of undesired byproducts has become an alternative way to synthesize and produce bioactive compounds. In this study, we present genetically engineered E. coli-based co-culture system to the de novo synthesis of apigetrin (APG), an apigenin-7-O-β-D-glucopyranoside of apigenin. The culture system consists of an upstream module including 4-coumarate: CoA ligase (4CL), chalcone synthase, chalcone flavanone isomerase (CHS, CHI), and flavone synthase I (FNSI) to synthesize apigenin (API) from p-coumaric acid (PCA). Whereas, the downstream system contains a metabolizing module to enhance the production of UDP-glucose and expression of glycosyltransferase (PaGT3) to convert API into APG. To accomplish this improvement in titer, the initial inoculum ratio of strains for making the co-culture system, temperature, and media component was optimized. Following large-scale production, a yield of 38.5 µM (16.6 mg/L) of APG was achieved. In overall, this study provided an efficient tool to synthesize bioactive compounds in microbial cells.
- Published
- 2018
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17. Synthesis of umbelliferone derivatives in Escherichia coli and their biological activities.
- Author
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Chu LL, Pandey RP, Lim HN, Jung HJ, Thuan NH, Kim TS, and Sohng JK
- Abstract
Background: Umbelliferone, also known as 7-hydroxycoumarin, is a phenolic metabolite found in many familiar plants. Its derivatives have been shown to have various pharmacological and chemo-preventive effects on human health. A uridine diphosphate glycosyltransferase YjiC from Bacillus licheniformis DSM 13, a cytochrome P450BM3 (CYP450 BM3) variant namely mutant 13 (M13) from Bacillus megaterium , and an O -methyltransferase from Streptomyces avermitilis (SaOMT2) were used for modifications of umbelliferone., Results: Three umbelliferone derivatives (esculetin, skimmin, and herniarin) were generated through enzymatic and whole cell catalysis. To improve the efficiencies of biotransformation, different media, incubation time and concentration of substrate were optimized and the production was scaled up using a 3-L fermentor. The maximum yields of esculetin, skimmin, and herniarin were 337.10 μM (67.62%), 995.43 μM (99.54%), and 37.13 μM (37.13%), respectively. The water solubility of esculetin and skimmin were 1.28-folds and 3.98-folds as high as umbelliferone, respectively, whereas herniarin was 1.89-folds less soluble than umbelliferone. Moreover, the antibacterial and anticancer activities of herniarin showed higher than umbelliferone, esculetin and skimmin., Conclusions: This study proves that both native and engineered enzymes could be employed for the production of precious compounds via whole cell biocatalysis. We successfully produced three molecules herniarin, esculetin and skimmin in practical amounts and their antibacterial and anticancer properties were accessed. One of the newly synthesized molecules the present research suggests that the combinatorial biosynthesis of different biosynthetic enzymes could rapidly promote to a novel secondary metabolite.
- Published
- 2017
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18. Saccharopolyspora Species: Laboratory Maintenance and Enhanced Production of Secondary Metabolites.
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Dhakal D, Pokhrel AR, Jha AK, Thuan NH, and Sohng JK
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- Culture Media chemistry, Mutagenesis, Preservation, Biological methods, Saccharopolyspora genetics, Bacteriological Techniques methods, Biological Products metabolism, Metabolic Engineering methods, Saccharopolyspora growth & development, Saccharopolyspora metabolism
- Abstract
Saccharopolyspora spp. are aerobic, Gram-positive, non-acid-fast, and non-motile actinomycetes. Various species of the genus Saccharopolyspora have been reported with an ability to produce various bioactive compounds for pharmaceutical and agricultural uses. This unit includes general protocols for the laboratory maintenance of Saccharopolyspora species, including growth in liquid medium, growth on solid agar, long-term storage, and generation of a higher producer strain by mutagenesis. Saccharopolyspora spinosa ATCC 49460 is used as a prototype for explaining the considerations for efficient laboratory maintenance of Saccharopolyspora spp. Saccharopolyspora spinosa is a producer of spinosad, a prominent insecticide with selective activity against various insects. © 2017 by John Wiley & Sons, Inc., (Copyright © 2017 John Wiley & Sons, Inc.)
- Published
- 2017
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19. Microbial production of astilbin, a bioactive rhamnosylated flavanonol, from taxifolin.
- Author
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Thuan NH, Malla S, Trung NT, Dhakal D, Pokhrel AR, Chu LL, and Sohng JK
- Subjects
- Antineoplastic Agents chemistry, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Biosynthetic Pathways, Cell Line, Tumor, Cell Survival drug effects, Escherichia coli enzymology, Escherichia coli genetics, Gene Knockout Techniques, Genetic Engineering methods, Glycosylation, Glycosyltransferases genetics, Humans, Quercetin metabolism, Quercetin pharmacology, Antineoplastic Agents pharmacology, Flavonols biosynthesis, Glycosyltransferases metabolism, Quercetin analogs & derivatives, Rhamnose metabolism
- Abstract
Flavonoids are plant-based polyphenolic biomolecules with a wide range of biological activities. Glycosylated flavonoids have drawn special attention in the industries as it improves solubility, stability, and bioactivity. Herein, we report the production of astilbin (ATN) from taxifolin (TFN) in genetically-engineered Escherichia coli BL21(DE3). The exogenously supplied TFN was converted to ATN by 3-O-rhamnosylation utilizing the endogeneous TDP-L-rhamnose in presence of UDP-glycosyltransferase (ArGT3, Gene Bank accession number: At1g30530) from Arabidopsis thaliana. Upon improving the intracellular TDP-L-rhamnose pool by knocking out the chromosomal glucose phosphate isomerase (pgi) and D-glucose-6-phosphate dehydrogenase (zwf) deletion along with the overexpression of rhamnose biosynthetic pathway increases the biotransformation product, ATN with total conversion of ~49.5 ± 1.67% from 100 µM of taxifolin. In addition, the cytotoxic effect of taxifolin-3-O-rhamnoside on PANC-1 and A-549 cancer cell lines was assessed for establishing ATN as potent antitumor compound.
- Published
- 2017
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20. Methylation of flavonoids: Chemical structures, bioactivities, progress and perspectives for biotechnological production.
- Author
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Koirala N, Thuan NH, Ghimire GP, Thang DV, and Sohng JK
- Subjects
- Biological Availability, Biotechnology, Flavonoids pharmacokinetics, Humans, Methylation, Methyltransferases metabolism, Structure-Activity Relationship, Flavonoids chemistry, Flavonoids pharmacology
- Abstract
Among the natural products, flavonoids have been particularly attractive, highly studied and become one of the most important promising agent to treat cancer, oxidant stress, pathogenic bacteria, inflammations, cardio-vascular dysfunctions, etc. Despite many promising roles of flavonoids, expectations have not been fulfilled when studies were extended to the in vivo condition, particularly in humans. Instability and very low oral bioavailability of dietary flavonoids are the reasons behind this. Researches have demonstrated that the methylation of these flavonoids could increase their promise as pharmaceutical agents leading to novel applications. Methylation of the flavonoids via theirs free hydroxyl groups or C atom dramatically increases their metabolic stability and enhances the membrane transport, leading to facilitated absorption and highly increased oral bioavailability. In this paper, we concentrated on analysis of flavonoid methoxides including O- and C-methoxide derivatives in aspect of structure, bioactivities and description of almost all up-to-date O- and C-methyltransferases' enzymatic characteristics. Furthermore, modern biological approaches for synthesis and production of flavonoid methoxides using metabolic engineering and synthetic biology have been focused and updated up to 2015. This review will give a handful information regarding the methylation of flavonoids, methyltransferases and biotechnological synthesis of the same., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
21. Advances in Biochemistry and Microbial Production of Squalene and Its Derivatives.
- Author
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Ghimire GP, Thuan NH, Koirala N, and Sohng JK
- Subjects
- Bacteria genetics, Biosynthetic Pathways, Fungi genetics, Squalene chemistry, Bacteria metabolism, Fungi metabolism, Industrial Microbiology trends, Squalene metabolism
- Abstract
Squalene is a linear triterpene formed via the MVA or MEP biosynthetic pathway and is widely distributed in bacteria, fungi, algae, plants, and animals. Metabolically, squalene is used not only as a precursor in the synthesis of complex secondary metabolites such as sterols, hormones, and vitamins, but also as a carbon source in aerobic and anaerobic fermentation in microorganisms. Owing to the increasing roles of squalene as an antioxidant, anticancer, and anti-inflammatory agent, the demand for this chemical is highly urgent. As a result, with the exception of traditional methods of the isolation of squalene from animals (shark liver oil) and plants, biotechnological methods using microorganisms as producers have afforded increased yield and productivity, but a reduction in progress. In this paper, we first review the biosynthetic routes of squalene and its typical derivatives, particularly the squalene synthase route. Second, typical biotechnological methods for the enhanced production of squalene using microbial cell factories are summarized and classified. Finally, the outline and discussion of the novel trend in the production of squalene with several updated events to 2015 are presented.
- Published
- 2016
- Full Text
- View/download PDF
22. Recent advances in biochemistry and biotechnological synthesis of avermectins and their derivatives.
- Author
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Thuan NH, Pandey RP, and Sohng JK
- Subjects
- Ivermectin chemistry, Ivermectin metabolism, Multigene Family, Mycobacterium tuberculosis metabolism, Streptomyces metabolism, Biochemistry trends, Biotechnology trends, Ivermectin analogs & derivatives
- Abstract
Avermectins (AVMs), produced by Streptomyces avermitilis MA-4680 (or ATCC 31267, NRRL 8165, NCBIM 12804), are 16-member macrocylic lactones that play very important functions as bactericidal and antiparasitic agents against nematodes and anthropods, as well as Mycobacterium tuberculosis H37Rv. Since its discovery in 1975, use of AVM has been widely spreading around the globe. To date, the whole genome sequence of S. avermitilis K139 has been acquired, in which the AVM biosynthetic gene cluster was the most highly investigated to mine the genes responsible for functional as well as regulatory roles. Therefore, significant progress has been achieved for understanding and manipulating the biosynthesis, improved production, regulation mechanism, side effects, as well as the resistance of AVMs and their derivatives. These findings will facilitate further strain improvement and biosynthesis of novel derivatives bearing stable and improved biological activities, as well as overcoming the resistance mechanism to open up a bright period for these compounds. In this review, we have summarized and analyzed the update in advanced progress in biochemistry and biotechnological approaches used for the production of AVMs and their derivatives.
- Published
- 2014
- Full Text
- View/download PDF
23. Improvement of regio-specific production of myricetin-3-O-α-L-rhamnoside in engineered Escherichia coli.
- Author
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Thuan NH, Pandey RP, Thuy TT, Park JW, and Sohng JK
- Subjects
- Antioxidants chemistry, Antioxidants metabolism, Arabidopsis genetics, Carbohydrates chemistry, Escherichia coli enzymology, Mannosides chemistry, Mannosides genetics, Arabidopsis enzymology, Escherichia coli genetics, Glycosyltransferases genetics, Mannosides biosynthesis
- Abstract
Myricetin is an important flavonol whose medically important properties include activities as an antioxidant, anticarcinogen, and antimutagen. The solubility, stability, and other biological properties of the compounds can be enhanced by conjugating aglycon with sugar moieties. The type of sugar moiety also plays a significant role in the biological and physical properties of the natural product glycosides. Reconstructed Escherichia coli containing thymidine diphosphate-α-L-rhamnose sugar gene cassette and Arabidopsis-derived glycosyltransferase were used for rhamnosylation of myricetin. Myricetin (100 μM) was exogenously supplemented to induced cultures of engineered E. coli. The formation of target product-myricetin-3-O-α-L-rhamnoside-was confirmed by chromatographic and NMR analyses. The yield of product was improved by using various mutants and methylated cyclodextrin as a molecular carrier for myricetin in combination with E. coli M3G3. The maximal yield of product is 55.6 μM (3.31-fold higher than the control E. coli MG3) and shows 55.6 % bioconversion of substrate under optimized conditions.
- Published
- 2013
- Full Text
- View/download PDF
24. Recent biotechnological progress in enzymatic synthesis of glycosides.
- Author
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Thuan NH and Sohng JK
- Subjects
- Animals, Glycosylation, Humans, Biotechnology methods, Glycoside Hydrolases metabolism, Glycosides biosynthesis, Glycosyltransferases metabolism
- Abstract
Glycosylation is one of the most important post-modification processes of small molecules and enables the parent molecule to have increased solubility, stability, and bioactivity. Enzyme-based glycosylation has achieved significant progress due to advances in protein engineering, DNA recombinant techniques, exploitation of biosynthetic gene clusters of natural products, and computer-based modeling programs. Our report summarizes glycosylation data that have been published within the past five years to provide an overall review of current progress. We also present the future trends and perspectives for glycosylation.
- Published
- 2013
- Full Text
- View/download PDF
25. Characterization of sterol glucosyltransferase from Salinispora tropica CNB-440: potential enzyme for the biosynthesis of sitosteryl glucoside.
- Author
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Thuan NH, Yamaguchi T, Lee JH, and Sohng JK
- Subjects
- Amino Acid Sequence, Bacterial Proteins genetics, Bacterial Proteins isolation & purification, Genes, Bacterial, Glucosyltransferases genetics, Glucosyltransferases isolation & purification, Kinetics, Micromonosporaceae genetics, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Substrate Specificity, Bacterial Proteins metabolism, Glucosides biosynthesis, Glucosyltransferases metabolism, Micromonosporaceae enzymology, Sitosterols metabolism
- Abstract
A sterol glucosyltransferase-encoded gene was isolated from Salinispora tropica CNB-440, a marine, sediment-dwelling, Gram positive bacterium that produces the potent anticancer compound, salinosporamide A. The full-length gene consists of 1284 nucleotides and encodes 427 amino acids with a calculated mass of 45.65kDa. The gene was then cloned and heterologously expressed in Escherichia coli BL21(DE3). The amino acid sequence shares 39% similarity with the glycosyltransferase from Withania somnifera, which belongs to glycosyltransferase family 1. Enzyme reactions were carried out with the various free sterols (acceptor) and NDP-sugars (donor). The purified protein only showed activity for glucosylation of β-sitosterol with UDP-D-glucose and TDP-D-glucose donors, and optimal activity at pH 7.5 and 37°C. Among these two donors, UDP-D-glucose was preferred., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
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