118 results on '"Thomson DR"'
Search Results
2. Social media use and adolescent health-risk behaviours: A systematic review and meta-analysis
- Author
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Purba, Ms Amrit Kaur, primary, Thomson, Dr Rachel M, additional, Henery, Dr Paul M, additional, Pearce, Dr Anna, additional, Henderson, Professor Marion, additional, and Katikireddi, Professor S Vittal, additional
- Published
- 2023
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3. Guillain Barre Syndrome - Acute Inflammatory Demyelinating Polyneuropathy with Unusual Descending Paralysis
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Meera Devi, Dr Kannan, primary, V Padma, Dr, additional, Sathyapriya, Dr, additional, Shiny Thomson, Dr, additional, Sarath Bhaskar, Dr, additional, and Saketh Ramineni, Dr, additional
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- 2022
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4. Magic in Practice (Second Edition): Introducing Medical NLP: the art and science of language in healing and health
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Garner Thomson, Dr Khalid Khan
- Published
- 2015
5. Ruptured abdominal aortic aneurysm
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Thomson, Dr Alastair J, primary, Royds, Dr Matthew T, additional, and Thomson, Dr Alastair J, additional
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- 2014
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6. Elective aorto-femoral arterial revascularization
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Thomson, Dr Alastair J, primary, Royds, Dr Matthew T, additional, and Thomson, Dr Alastair J, additional
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- 2014
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7. Carotid endarterectomy
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Thomson, Dr Alastair J, primary, Royds, Dr Matthew T, additional, and Thomson, Dr Alastair J, additional
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- 2014
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8. Federated Governance: A successful model for e-learning
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Wood, Michele, primary, Russell, (Dr) Alison, additional, Verrall, Trudi, additional, Thomson, (Dr) Amanda, additional, English, Louise, additional, Mancarella, Ariana, additional, and Clark, Tracey, additional
- Published
- 2015
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9. Effect of solids retention time in membrane bioreactors on reverse osmosis membrane fouling
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Howe, Dr. Kerry, Thomson, Dr. Bruce, Schuler, Dr. Andrew, Field, Elizabeth, Howe, Dr. Kerry, Thomson, Dr. Bruce, Schuler, Dr. Andrew, and Field, Elizabeth
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- Membrane reactors
- Abstract
As sources of clean fresh water diminish, there is an increasing interest in water reuse. Membrane bioreactors (MBRs) are commonly used in wastewater treatment plants, though reuse of treated wastewater for potable purposes requires more advanced treatment. Reverse osmosis (RO), a water treatment process commonly used for drinking water, provides near complete removal of all inorganic and organic constituents from water. While much research has been conducted on both treatment processes, little research has been done on how the combined processes work together in treating wastewater to high enough standards for potable water reuse. The MBR-RO treatment process was studied using a bench scale system to treat primary wastewater effluent from a large municipal wastewater treatment plant. The solids retention time (SRT) in the MBRs was adjusted to 2, 10, and 20 days for the three experiments conducted and various parameters were measured. These parameters included inorganics and organics in the water and on the RO membranes, as well as the specific flux across the RO membranes. While the concentrations of organic and inorganic constituents in the MBR permeate were similar at the different SRTs, they accumulated to different concentrations on the RO membranes, and different rates of RO specific flux decline were observed. The higher the MBR SRT, the faster the decline in RO membrane specific flux. The effectiveness of RO membrane cleaning could not be correlated to MBR SRT. Confocal microscopy revealed higher ratios of live cells to dead cells and carbohydrates to dead cells at the highest SRT, but no trend was observed.
- Published
- 2010
10. Applying decision making theory to clinical judgements in violence risk assessment
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Murray, Jennifer, primary and Thomson, Dr. Mary E., additional
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- 2010
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11. Clinical judgement in violence risk assessment
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Murray, Jennifer, primary and Thomson, Dr. Mary E., additional
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- 2010
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12. MEETINGS OF THE SOCIETY FOR SCIENTIFIC BUSINESS.
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Thomson, Dr. A. Landsborough, primary
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- 2009
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13. NOTES AND EXHIBITIONS
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Thomson, Dr. A. Landsborough, primary
- Published
- 2009
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14. An ethnographic study of physiotherapists’ perceptions of their interactions with patients on a chronic pain unit
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Thomson, Dr. Di, primary
- Published
- 2008
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15. The Christian
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Thomson, Dr., Thomson, Dr., Thomson, Dr., and Thomson, Dr.
- Abstract
The Ladies' repository: a monthly periodical, devoted to literature, arts, and religion. / Volume 2, Issue 3, Page(s) 75-76, (dlps) volume: acg2248.1-02.003, (dlps) article: acg2248.1-02.003:10, http://quod.lib.umich.edu/t/text/accesspolicy.html
16. Rev. J. Young
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Thomson, Dr., Thomson, Dr., Thomson, Dr., and Thomson, Dr.
- Abstract
The Ladies' repository: a monthly periodical, devoted to literature, arts, and religion. / Volume 17, Issue 1, Page(s) 1-8, (dlps) volume: acg2248.1-17.001, (dlps) article: acg2248.1-17.001:3, http://quod.lib.umich.edu/t/text/accesspolicy.html
17. Literary Associations
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Thomson, Dr., Thomson, Dr., Thomson, Dr., and Thomson, Dr.
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The Ladies' repository: a monthly periodical, devoted to literature, arts, and religion. / Volume 17, Issue 5, Page(s) 257-262, (dlps) volume: acg2248.1-17.005, (dlps) article: acg2248.1-17.005:1, http://quod.lib.umich.edu/t/text/accesspolicy.html
18. Originality
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Thomson, Dr., Thomson, Dr., Thomson, Dr., and Thomson, Dr.
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The Ladies' repository: a monthly periodical, devoted to literature, arts, and religion. / Volume 2, Issue 2, Page(s) 38-42, (dlps) volume: acg2248.1-02.002, (dlps) article: acg2248.1-02.002:7, http://quod.lib.umich.edu/t/text/accesspolicy.html
19. Religious Meditation
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Thomson, Dr., Thomson, Dr., Thomson, Dr., and Thomson, Dr.
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The Ladies' repository: a monthly periodical, devoted to literature, arts, and religion. / Volume 2, Issue 4, Page(s) 98-101, (dlps) volume: acg2248.1-02.004, (dlps) article: acg2248.1-02.004:2, http://quod.lib.umich.edu/t/text/accesspolicy.html
20. Phrenology
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Thomson, Dr., Thomson, Dr., Thomson, Dr., and Thomson, Dr.
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The Ladies' repository: a monthly periodical, devoted to literature, arts, and religion. / Volume 1, Issue 12, Page(s) 361-367, (dlps) volume: acg2248.1-01.012, (dlps) article: acg2248.1-01.012:6, http://quod.lib.umich.edu/t/text/accesspolicy.html
21. Tuberculosis as a World Problem: The Current Epidemiological Position
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Thomson Dr
- Subjects
Pathology ,medicine.medical_specialty ,Tuberculosis ,Tuberculin Test ,business.industry ,Public Health, Environmental and Occupational Health ,medicine.disease ,Mass Chest X-Ray ,Position (obstetrics) ,Infectious Diseases ,Epidemiology ,medicine ,Humans ,Current (fluid) ,Epidemiologic Methods ,business ,Intensive care medicine ,Developing Countries ,Tuberculosis, Pulmonary - Published
- 1974
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22. The Use of the Trephine for Penetrating Keratoplasty
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Thomson, Dr George, primary
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- 1976
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23. REMOTE SENSING OF WATER RESOURCES INTERNATIONAL SYMPOSIUM CANADA CENTRE FOR INLAND WATERS Burlington, Ontario, Canada June 11‐14, 1973
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Thomson, Dr. K. P. B., primary
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- 1972
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24. Untitled.
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THOMSON., Dr.
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- 1831
25. Screening for Body Dysmorphic Disorder in Plastic Surgery Patients.
- Author
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Thomson DR, Thomson NEV, and Southwick G
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- Humans, Surveys and Questionnaires, Female, Surgery, Plastic, Plastic Surgery Procedures methods, Mass Screening methods, Male, Australia, Adult, Body Image psychology, Body Dysmorphic Disorders diagnosis, Body Dysmorphic Disorders psychology
- Abstract
Introduction: The Australian medical board, the Australian Health Practitioner Regulation Agency (AHPRA) has recently introduced new regulations mandating providers of cosmetic surgery undertake a clinical screen for body dysmorphic disorder (BDD) in all potential cosmetic surgery patients. The assessment must be conducted by the surgeon using a validated psychological screening tool. The aims of this paper are to discuss the key clinical characteristics of BDD before reviewing currently validated screening tools that would meet this new regulatory requirement, and which may be most applicable to a busy plastic surgery practice., Methods: A literature search identified 1164 titles, of which 229 titles were retrieved for abstract screening. Six studies were identified that validated BDD screening tools in a setting relevant to cosmetic plastic surgery., Results: Six validated screening were identified: BDD Questionnaire (BDDQ), BDD Questionnaire Dermatology Version (BDDQ-DV), BDD Questionnaire Aesthetic Surgery (BDDQ-AS), Cosmetic Procedure Screening Questionnaire (COPS), Body Dysmorphia Symptom Scale (BDSS) and the BDD Screening Test (BDD-ST). Our group practice has chosen to adopt the BDDQ-AS to meet the AHPRA regulator requirement for BDD screening based on its robust validation and ease of use in clinical practice, consisting of a seven-item self-report questionnaire that can be reliably completed in 1-2 minutes in most cases., Conclusion: Of the six screening tools for body dysmorphic disorder available for use in clinical practice that have been validated in a cosmetic population setting, we have chosen to use the BDD Questionnaire Aesthetic Surgery (BDDQ-AS). To date all available validated screening tools are based on the DSM-IV, and further work to develop a validated screening tool based on the revised definition of BDD in the DSM-V is recommended, with a particular focus on items relating to repetitive physical or mental behaviours., Level of Evidence Iii: This journal requires that authors assign a level of evidence to each article. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors www.springer.com/00266 ., (© 2024. Springer Science+Business Media, LLC, part of Springer Nature and International Society of Aesthetic Plastic Surgery.)
- Published
- 2024
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26. Ultrasound to Detect Flipped Breast Implants: A Novel Use for the Base Plate.
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Thomson DR, Berlinski NG, Gibson E, and Ritz M
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- Humans, Female, Ultrasonography, Mammary methods, Prosthesis Failure, Prosthesis Design, Breast Implants adverse effects, Breast Implantation instrumentation, Breast Implantation adverse effects, Breast Implantation methods
- Published
- 2024
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27. A Useful Technique for Templating the Reverse Radial Forearm Flap (RFF) for Thumb Degloving Injuries.
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Christopoulos G, Thomson DR, and Jones ME
- Abstract
Degloving injuries of the thumb pose a significant challenge as replantation is usually unsuccessful. A 60-year-old man was transferred to " Queen Victoria Hospital NHS Trust " four hours after having his left thumb completely avulsed at metacarpophalangeal level. The anastomosis repeatedly failed during urgent replantation and a distally based pedicled RFF was utilized. To achieve accurate flap design, we used the amputated part as a template for the missing tissue. After a longitudinal cut exposing the inner surface, the thumb was placed flat on top of a clean gauze package which was used as a paper template for the skin paddle; the flap was subsequently sutured without tension. Since the circumferential soft tissue envelope is three-dimensional, accurate designing of the flap on the forearm is vital. We propose a useful technique using the amputated part to enable a precise estimation of the tissue requirements to reduce potential complications related to flap inset., Competing Interests: The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article., (© 2022 The Author(s).)
- Published
- 2024
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28. New Australian Laws Regarding Advertising of Cosmetic Surgery: An Instant Challenge to Many Plastic Surgeons.
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Thomson DR and Ritz M
- Published
- 2023
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29. Peri-operative management of Ozempic and other GLP-1 agonists during cosmetic surgery: What plastic surgeons need to know.
- Author
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Thomson DR, Lashansky B, and Ritz M
- Abstract
Competing Interests: Declaration of Competing Interest None.
- Published
- 2023
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30. Laminar flow-based microfluidic systems for molecular interaction analysis-Part 1: Chip development, system operation and measurement setup.
- Author
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Watkin SAJ, Hashemi A, Thomson DR, Pearce FG, Dobson RCJ, and Nock VM
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- Proteins, Lab-On-A-Chip Devices, Diffusion, Microfluidics, Microfluidic Analytical Techniques
- Abstract
The recent advent of laminar flow-based microfluidic systems for molecular interaction analysis has enabled transformative new profiling of proteins in regards to their structure, disordering, complex formation and interactions in general. Based on the diffusive transport of molecules perpendicular to the direction of laminar flow in a microfluidic channel, systems of this type promise continuous-flow, high-throughput screening of complex, multi-molecule interactions, while remaining tolerant to heterogeneous mixtures. Using common microfluidic device processing, the technology provides unique opportunities, as well as device design and experimental challenges, for integrative sample handling approaches that can investigate biomolecular interaction events in complex samples with readily available laboratory equipment. In this first chapter of a two-part series, we introduce system design and experimental setup requirements for a typical laminar flow-based microfluidic system for molecular interaction analysis in the form of what we call the 'LaMInA system' (Laminar flow-based Molecular Interaction Analysis system). We provide microfluidic device development advice on choice of device material, device design, including impact of channel geometry on the signal acquisition, and on design limitations and possible post-fabrication treatments to redress these. Finally. we cover aspects of fluidic actuation, such as selecting, measuring and controlling the flow rate appropriately, and provide a guide to possible fluorescent labels for proteins, as well as options for the fluorescence detection hardware, all in the context of assisting the reader in developing their own laminar flow-based experimental setup for biomolecular interaction analysis., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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31. Laminar flow-based microfluidic systems for molecular interaction analysis-Part 2: Data extraction, processing and analysis.
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Watkin SAJ, Hashemi A, Thomson DR, Nock VM, Dobson RCJ, and Pearce FG
- Subjects
- Microscopy, Fluorescence, Diffusion, Models, Theoretical, Microfluidics methods, Microfluidic Analytical Techniques methods
- Abstract
The rate at which fluorescently-labeled biomolecules, that are flowing at a constant speed in a microfluidic channel, diffuse into an adjacent buffer stream can be used to calculate the diffusion coefficient of the molecule, which then gives a measure of its size. Experimentally, determining the rate of diffusion involves capturing concentration gradients in fluorescence microscopy images at different distances along the length of the microfluidic channel, where distance corresponds to residence time, based on the flow velocity. The preceding chapter in this journal covered the development of the experimental setup, including information about the microscope camera detection systems used to acquire fluorescence microscopy data. In order to calculate diffusion coefficients from fluorescence microscopy images, intensity data are extracted from the images and then appropriate methods of processing and analyzing the data, including the mathematical models used for fitting, are applied to the extracted data. This chapter begins with a brief overview of digital imaging and analysis principles, before introducing custom software for extracting the intensity data from the fluorescence microscopy images. Subsequently, methods and explanations for performing the necessary corrections and appropriate scaling of the data are provided. Finally, the mathematics of one-dimensional molecular diffusion is described, and analytical approaches to obtaining the diffusion coefficient from the fluorescence intensity profiles are discussed and compared., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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32. How accurate are WorldPop-Global-Unconstrained gridded population data at the cell-level?: A simulation analysis in urban Namibia.
- Author
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Thomson DR, Leasure DR, Bird T, Tzavidis N, and Tatem AJ
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- Computer Simulation, Humans, Namibia, Population Density, Urban Population, Censuses, Residence Characteristics
- Abstract
Disaggregated population counts are needed to calculate health, economic, and development indicators in Low- and Middle-Income Countries (LMICs), especially in settings of rapid urbanisation. Censuses are often outdated and inaccurate in LMIC settings, and rarely disaggregated at fine geographic scale. Modelled gridded population datasets derived from census data have become widely used by development researchers and practitioners; however, accuracy in these datasets are evaluated at the spatial scale of model input data which is generally courser than the neighbourhood or cell-level scale of many applications. We simulate a realistic synthetic 2016 population in Khomas, Namibia, a majority urban region, and introduce several realistic levels of outdatedness (over 15 years) and inaccuracy in slum, non-slum, and rural areas. We aggregate the synthetic populations by census and administrative boundaries (to mimic census data), resulting in 32 gridded population datasets that are typical of LMIC settings using the WorldPop-Global-Unconstrained gridded population approach. We evaluate the cell-level accuracy of these gridded population datasets using the original synthetic population as a reference. In our simulation, we found large cell-level errors, particularly in slum cells. These were driven by the averaging of population densities in large areal units before model training. Age, accuracy, and aggregation of the input data also played a role in these errors. We suggest incorporating finer-scale training data into gridded population models generally, and WorldPop-Global-Unconstrained in particular (e.g., from routine household surveys or slum community population counts), and use of new building footprint datasets as a covariate to improve cell-level accuracy (as done in some new WorldPop-Global-Constrained datasets). It is important to measure accuracy of gridded population datasets at spatial scales more consistent with how the data are being applied, especially if they are to be used for monitoring key development indicators at neighbourhood scales within cities., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
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33. Modified Posterior Arm Flap for Axillary Hidradenitis Suppurativa.
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Thomson DR, Saltrese S, and Mehdi S
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- Adult, Arm, Axilla surgery, Female, Humans, Skin Transplantation, Surgical Flaps, Hidradenitis Suppurativa surgery
- Abstract
Introduction: Hidradenitis suppurativa (HS) is a chronic, inflammatory condition of the apocrine sweat glands present in 1% to 4% of the adult population, with twice greater prevalence in females. Surgical excision is the criterion-standard treatment for advanced, grade III disease, characterized by extensive and recurrent abscesses and interconnected sinus tracts. Numerous reconstructive methods have been used to cover the resulting defects, including secondary intention healing, use of skin grafts, and a wide range of locoregional flaps., Methods: The modified posterior arm flap has been developed for reconstruction of axillary defects after radical excision of HS. Based on perforating vessels from the axillary artery first identified by Masquelet, a brachioplasty-like incision is used to keep the donor site closure relatively hidden on the posteromedial aspect of the inner arm., Results: Eight modified posterior arm flaps have been undertaken in 6 patients, all women (mean age, 35 years; range, 22-51 years) from 2014 to 2019. All patients had complete resolution of their HS symptoms with no incidences of recurrence at mean follow-up of 15 months. All reported satisfaction with the aesthetic and functional outcomes of the procedure., Discussion: We present a novel modification of the posterior arm flap for the treatment of advanced axillary HS with good functional and aesthetic outcomes and no incidences of recurrence., Competing Interests: Conflicts of interest and sources of funding: none declared., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2022
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34. Microsurgical training pre-and post-COVID 19: Is there a re-learning curve and lessons for lockdown three.
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Thomson DR and Jones ME
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- Humans, COVID-19, Learning Curve, Mammaplasty education, Mammaplasty methods, Microsurgery education, Quarantine
- Abstract
Competing Interests: Declaration of Competing Interest None.
- Published
- 2021
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35. Addressing Unintentional Exclusion of Vulnerable and Mobile Households in Traditional Surveys in Kathmandu, Dhaka, and Hanoi: a Mixed-Methods Feasibility Study.
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Thomson DR, Bhattarai R, Khanal S, Manandhar S, Dhungel R, Gajurel S, Hicks JP, Duc DM, Ferdoush J, Ferdous T, Urmy NJ, Shawon RA, Long KQ, Poudel AN, Cartwright C, Wallace H, Ensor T, Baral S, Mashreky S, Huque R, Van Minh H, and Elsey H
- Subjects
- Adult, Bangladesh epidemiology, Feasibility Studies, Humans, Surveys and Questionnaires, Family Characteristics, Poverty
- Abstract
The methods used in low- and middle-income countries' (LMICs) household surveys have not changed in four decades; however, LMIC societies have changed substantially and now face unprecedented rates of urbanization and urbanization of poverty. This mismatch may result in unintentional exclusion of vulnerable and mobile urban populations. We compare three survey method innovations with standard survey methods in Kathmandu, Dhaka, and Hanoi and summarize feasibility of our innovative methods in terms of time, cost, skill requirements, and experiences. We used descriptive statistics and regression techniques to compare respondent characteristics in samples drawn with innovative versus standard survey designs and household definitions, adjusting for sample probability weights and clustering. Feasibility of innovative methods was evaluated using a thematic framework analysis of focus group discussions with survey field staff, and via survey planner budgets. We found that a common household definition excluded single adults (46.9%) and migrant-headed households (6.7%), as well as non-married (8.5%), unemployed (10.5%), disabled (9.3%), and studying adults (14.3%). Further, standard two-stage sampling resulted in fewer single adult and non-family households than an innovative area-microcensus design; however, two-stage sampling resulted in more tent and shack dwellers. Our survey innovations provided good value for money, and field staff experiences were neutral or positive. Staff recommended streamlining field tools and pairing technical and survey content experts during fieldwork. This evidence of exclusion of vulnerable and mobile urban populations in LMIC household surveys is deeply concerning and underscores the need to modernize survey methods and practices.
- Published
- 2021
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36. Population Estimates of GFR and Risk Factors for CKD in Guatemala.
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Miller AC, Tuiz E, Shaw L, Flood D, Garcia P, Dhaenens E, Thomson DR, Barnoya J, Montano CM, and Rohloff P
- Abstract
Introduction: Chronic kidney disease (CKD) is an emerging public health priority in Central America. However, data on the prevalence of CKD in Guatemala, Central America's most populous country, are limited, especially for rural communities., Methods: We conducted a population-representative survey of 2 rural agricultural municipalities in Guatemala. We collected anthropometric data, blood pressure, serum and urine creatinine, glycosylated hemoglobin, and urine albumin. Sociodemographic, health, and exposure data were self-reported., Results: We enrolled 807 individuals (63% of all eligible, 35% male, mean age 39.5 years). An estimated 4.0% (95% confidence interval [CI] 2.4-6.6) had CKD, defined as an estimated glomerular filtration rate (eGFR) less than 60 ml/min per 1.73 m
2 . Most individuals with an eGFR below 60 ml/min per 1.73 m2 had diabetes or hypertension. In multivariable analysis, the important factors associated with risk for an eGFR less than 60 ml/min per 1.73 m2 included a history of diabetes or hypertension (adjusted odds ratio [aOR] 11.21; 95% CI 3.28-38.24), underweight (body mass index [BMI] <18.5) (aOR 21.09; 95% CI 2.05-217.0), and an interaction between sugar cane agriculture and poverty (aOR 1.10; 95% CI 1.01-1.19)., Conclusions: In this population-based survey, most observed CKD was associated with diabetes and hypertension. These results emphasize the urgent public health need to address the emerging epidemic of diabetes, hypertension, and CKD in rural Guatemala. In addition, the association between CKD and sugar cane in individuals living in poverty provides some circumstantial evidence for existence of CKD of unknown etiology in the study communities, which requires further investigation., (© 2020 International Society of Nephrology. Published by Elsevier Inc.)- Published
- 2021
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37. Feasibility of satellite image and GIS sampling for population representative surveys: a case study from rural Guatemala.
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Miller AC, Rohloff P, Blake A, Dhaenens E, Shaw L, Tuiz E, Grandesso F, Mendoza Montano C, and Thomson DR
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- Feasibility Studies, Guatemala epidemiology, Health Surveys, Humans, Rural Population, Sampling Studies, Family Characteristics, Geographic Information Systems
- Abstract
Background: Population-representative household survey methods require up-to-date sampling frames and sample designs that minimize time and cost of fieldwork especially in low- and middle-income countries. Traditional methods such as multi-stage cluster sampling, random-walk, or spatial sampling can be cumbersome, costly or inaccurate, leading to well-known biases. However, a new tool, Epicentre's Geo-Sampler program, allows simple random sampling of structures, which can eliminate some of these biases. We describe the study design process, experiences and lessons learned using Geo-Sampler for selection of a population representative sample for a kidney disease survey in two sites in Guatemala., Results: We successfully used Epicentre's Geo-sampler tool to sample 650 structures in two semi-urban Guatemalan communities. Overall, 82% of sampled structures were residential and could be approached for recruitment. Sample selection could be conducted by one person after 30 min of training. The process from sample selection to creating field maps took approximately 40 h., Conclusion: In combination with our design protocols, the Epicentre Geo-Sampler tool provided a feasible, rapid and lower-cost alternative to select a representative population sample for a prevalence survey in our semi-urban Guatemalan setting. The tool may work less well in settings with heavy arboreal cover or densely populated urban settings with multiple living units per structure. Similarly, while the method is an efficient step forward for including non-traditional living arrangements (people residing permanently or temporarily in businesses, religious institutions or other structures), it does not account for some of the most marginalized and vulnerable people in a population-the unhoused, street dwellers or people living in vehicles.
- Published
- 2020
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38. Gridded population survey sampling: a systematic scoping review of the field and strategic research agenda.
- Author
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Thomson DR, Rhoda DA, Tatem AJ, and Castro MC
- Subjects
- Humans, Poverty, Satellite Imagery, Surveys and Questionnaires, Censuses, Family Characteristics
- Abstract
Introduction: In low- and middle-income countries (LMICs), household survey data are a main source of information for planning, evaluation, and decision-making. Standard surveys are based on censuses, however, for many LMICs it has been more than 10 years since their last census and they face high urban growth rates. Over the last decade, survey designers have begun to use modelled gridded population estimates as sample frames. We summarize the state of the emerging field of gridded population survey sampling, focussing on LMICs., Methods: We performed a systematic scoping review in Scopus of specific gridded population datasets and "population" or "household" "survey" reports, and solicited additional published and unpublished sources from colleagues., Results: We identified 43 national and sub-national gridded population-based household surveys implemented across 29 LMICs. Gridded population surveys used automated and manual approaches to derive clusters from WorldPop and LandScan gridded population estimates. After sampling, some survey teams interviewed all households in each cluster or segment, and others sampled households from larger clusters. Tools to select gridded population survey clusters include the GridSample R package, Geo-sampling tool, and GridSample.org. In the field, gridded population surveys generally relied on geographically accurate maps based on satellite imagery or OpenStreetMap, and a tablet or GPS technology for navigation., Conclusions: For gridded population survey sampling to be adopted more widely, several strategic questions need answering regarding cell-level accuracy and uncertainty of gridded population estimates, the methods used to group/split cells into sample frame units, design effects of new sample designs, and feasibility of tools and methods to implement surveys across diverse settings.
- Published
- 2020
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39. Factors Affecting Disruption of Navel Orangeworm (Lepidoptera: Pyralidae) Using Aerosol Dispensers.
- Author
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Burks CS and Thomson DR
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- Aerosols, Animals, Insect Control, Male, Pheromones pharmacology, Reproduction, Sexual Behavior, Animal, Moths, Sex Attractants
- Abstract
Mating disruption is used to help manage the navel orangeworm on approximately 200,000 ha of tree nut crops. Aerosol dispensers are the most common formulation, and all formulations use an incomplete pheromone blend consisting solely of (Z11,Z13)-hexadecadienal. Profile analysis (examination of capture and males in pheromone traps as a function of spatial density of dispensers) demonstrated a sharp drop of males captured with a very low density of dispensers, and then an approximately linear relationship between 90 and approaching 100% suppression. This near-linear portion of the profile includes both dispenser densities in which crop protection has been demonstrated, and densities in which it is unlikely. Suppression of males in pheromone traps was lost the next night after dispensers were removed, suggesting that the active ingredient was not persistent in the orchard environment. During most of the summer preharvest period, turning the dispensers off 1 or 2 h before the end of the predawn period of sexual activity provides the same amount of suppression of sexual communication as emission throughout the period of sexual activity. This suggests that encountering the pheromone from the mating disruption dispensers had a persistent effect on males. During the autumn postharvest period, only emission prior to midnight suppressed communication on nights on which the temperature fell below 19°C by midnight. These findings and the analysis will help manufacturers refine their offerings for mating disruption for this important California pest, and buyers of mating disruption to assess cost-effectiveness of competing offerings., (Published by Oxford University Press on behalf of Entomological Society of America 2020.)
- Published
- 2020
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40. A grid-based sample design framework for household surveys.
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Boo G, Darin E, Thomson DR, and Tatem AJ
- Abstract
Traditional sample designs for household surveys are contingent upon the availability of a representative primary sampling frame. This is defined using enumeration units and population counts retrieved from decennial national censuses that can become rapidly inaccurate in highly dynamic demographic settings. To tackle the need for representative sampling frames, we propose an original grid-based sample design framework introducing essential concepts of spatial sampling in household surveys. In this framework, the sampling frame is defined based on gridded population estimates and formalized as a bi-dimensional random field, characterized by spatial trends, spatial autocorrelation, and stratification. The sampling design reflects the characteristics of the random field by combining contextual stratification and proportional to population size sampling. A nonparametric estimator is applied to evaluate the sampling design and inform sample size estimation. We demonstrate an application of the proposed framework through a case study developed in two provinces located in the western part of the Democratic Republic of the Congo. We define a sampling frame consisting of settled cells with associated population estimates. We then perform a contextual stratification by applying a principal component analysis (PCA) and k -means clustering to a set of gridded geospatial covariates, and sample settled cells proportionally to population size. Lastly, we evaluate the sampling design by contrasting the empirical cumulative distribution function for the entire population of interest and its weighted counterpart across different sample sizes and identify an adequate sample size using the Kolmogorov-Smirnov distance between the two functions. The results of the case study underscore the strengths and limitations of the proposed grid-based sample design framework and foster further research into the application of spatial sampling concepts in household surveys., Competing Interests: No competing interests were disclosed., (Copyright: © 2020 Boo G et al.)
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- 2020
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41. Correction to: Extending Data for Urban Health Decision-Making: a Menu of New and Potential Neighborhood-Level Health Determinants Datasets in LMICs.
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Thomson DR, Linard C, Vanhuysse S, Steele JE, Shimoni M, Siri J, Caiaffa WT, Rosenberg M, Wolff E, Grippa T, Georganos S, Elsey H, and Thomson DR
- Abstract
Readers should note an additional Acknowledgment for this article: Dana Thomson is funded by the Economic and Social Research Council grant number ES/5500161/1.
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- 2019
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42. Surgical cost implications of the AJCC v8 staging system for melanoma and the melanoma in focus consensus statement.
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Thomson DR, King ICC, Cooper L, Odili J, and Powell BWEM
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- Aged, Consensus, Databases, Factual, Disease-Free Survival, Female, Humans, Male, Melanoma mortality, Middle Aged, Neoplasm Invasiveness pathology, Neoplasm Staging, Prognosis, Risk Assessment, Skin Neoplasms mortality, Societies, Medical, Survival Analysis, United Kingdom, Cost-Benefit Analysis, Melanoma pathology, Melanoma surgery, Sentinel Lymph Node Biopsy economics, Skin Neoplasms pathology, Skin Neoplasms surgery
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- 2019
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43. Extending Data for Urban Health Decision-Making: a Menu of New and Potential Neighborhood-Level Health Determinants Datasets in LMICs.
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Thomson DR, Linard C, Vanhuysse S, Steele JE, Shimoni M, Siri J, Caiaffa WT, Rosenberg M, Wolff E, Grippa T, Georganos S, and Elsey H
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- Cities statistics & numerical data, Developing Countries statistics & numerical data, Humans, Data Analysis, Decision Making, Health Equity, Health Status, Residence Characteristics statistics & numerical data, Urban Health statistics & numerical data
- Abstract
Area-level indicators of the determinants of health are vital to plan and monitor progress toward targets such as the Sustainable Development Goals (SDGs). Tools such as the Urban Health Equity Assessment and Response Tool (Urban HEART) and UN-Habitat Urban Inequities Surveys identify dozens of area-level health determinant indicators that decision-makers can use to track and attempt to address population health burdens and inequalities. However, questions remain as to how such indicators can be measured in a cost-effective way. Area-level health determinants reflect the physical, ecological, and social environments that influence health outcomes at community and societal levels, and include, among others, access to quality health facilities, safe parks, and other urban services, traffic density, level of informality, level of air pollution, degree of social exclusion, and extent of social networks. The identification and disaggregation of indicators is necessarily constrained by which datasets are available. Typically, these include household- and individual-level survey, census, administrative, and health system data. However, continued advancements in earth observation (EO), geographical information system (GIS), and mobile technologies mean that new sources of area-level health determinant indicators derived from satellite imagery, aggregated anonymized mobile phone data, and other sources are also becoming available at granular geographic scale. Not only can these data be used to directly calculate neighborhood- and city-level indicators, they can be combined with survey, census, administrative and health system data to model household- and individual-level outcomes (e.g., population density, household wealth) with tremendous detail and accuracy. WorldPop and the Demographic and Health Surveys (DHS) have already modeled dozens of household survey indicators at country or continental scales at resolutions of 1 × 1 km or even smaller. This paper aims to broaden perceptions about which types of datasets are available for health and development decision-making. For data scientists, we flag area-level indicators at city and sub-city scales identified by health decision-makers in the SDGs, Urban HEART, and other initiatives. For local health decision-makers, we summarize a menu of new datasets that can be feasibly generated from EO, mobile phone, and other spatial data-ideally to be made free and publicly available-and offer lay descriptions of some of the difficulties in generating such data products.
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- 2019
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44. A comparison of the academic impact of plastic surgery units in the United Kingdom and Ireland using bibliometric analysis.
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Trevatt AEJ, Thomson DR, Miller R, Colquhoun M, Idowu AI, and Rahman S
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- Bibliometrics, Humans, Ireland, United Kingdom, Hospital Units statistics & numerical data, Publishing statistics & numerical data, Surgery, Plastic
- Abstract
Academic output is just one aspect of a successful career as a plastic surgeon. However, for those with a strong interest in academia, the academic output of a department will likely be a key factor when deciding how to rank jobs. The aim of this study was to quantify and rank the academic output of plastic surgery units across the UK and Ireland. The Institute for Scientific Information (ISI) Web of Science Bibliometric analysis tool was used to collate cumulative (1950-2016), 10 year (2006-2016) and 3 years (2013-2015) research output data for plastic surgery units in the UK and Ireland. Sixty-six plastic surgery units were identified. Departments were ranked for each time period according to the number of papers produced, number of citations (Nc) and h-index (a measure of the impact of scientific output). The top 3 departments for number of papers in the last 10 years were The Royal Free Hospital, London (226) Broomfield Hospital, Chelmsford (218), and Morriston Hospital and Swansea (188). The top 3 for h-number were The Royal Free Hospital (21) Wythenshawe Hospital, Manchester (18) and Morriston Hospital (17). Academic output varies across plastic surgery units in the UK and Ireland. A number of departments have consistently maintained high academic outputs across the years and will be of interest to surgeons hoping to pursue a career in academia.
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- 2019
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45. Optimizing Efficiency of Aerosol Mating Disruption for Navel Orangeworm (Lepidoptera: Pyralidae).
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Burks CS and Thomson DR
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- Aerosols, Animals, Male, Pheromones, Reproduction, Moths, Prunus dulcis
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Improved cost efficiency for aerosol mating disruption for the navel orangeworm, Amyelois transitella Walker, was examined in experiments performed between 2015 and 2017. A programmable dispenser was used to explore the effects of frequency of treatment, time of night when pheromone was emitted, and the concentration of pheromone required. A negative curvilinear trend of males captured as a function of emission frequency was evident in the range of 2-12 emissions per hour. A subsequent experiment found greater trap suppression when the same amount of active ingredient was emitted seven times per hour compared with the same amount of material emitted at twice the concentration but half the frequency. Another experiment found no significant difference in cumulative trap suppression between treatment for the last 4 or 6 h of the night compared with 12 h. A subsequent experiment comparing a current commercial mating disruption system emitting for 12 h with a proposed alternative emitting more material per hour for fewer hours showed similar levels of suppression of males in pheromone traps. A season-long efficacy trial using dispensers deployed and programmed based on these findings demonstrated significant reduction of damage to Nonpareil almonds treated with mating disruption. These data reveal important information about the response of the navel orangeworm to aerosol mating disruption, which provides improved cost-effectiveness compared with the status quo ante. These findings for navel orangeworm are discussed in relation to studies of aerosol mating disruption for the codling moth, Cydia pomonella L. (Lepidoptera: Tortricidae)., (Published by Oxford University Press on behalf of Entomological Society of America 2019.)
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- 2019
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46. Visual inspection for diagnosing cutaneous melanoma in adults.
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Dinnes J, Deeks JJ, Grainge MJ, Chuchu N, Ferrante di Ruffano L, Matin RN, Thomson DR, Wong KY, Aldridge RB, Abbott R, Fawzy M, Bayliss SE, Takwoingi Y, Davenport C, Godfrey K, Walter FM, and Williams HC
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- Adult, Aged, Algorithms, Diagnostic Errors, Humans, Melanoma diagnostic imaging, Middle Aged, Sensitivity and Specificity, Skin Neoplasms diagnostic imaging, Melanoma, Cutaneous Malignant, Melanoma diagnosis, Physical Examination methods, Skin Neoplasms diagnosis
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Background: Melanoma has one of the fastest rising incidence rates of any cancer. It accounts for a small percentage of skin cancer cases but is responsible for the majority of skin cancer deaths. History-taking and visual inspection of a suspicious lesion by a clinician is usually the first in a series of 'tests' to diagnose skin cancer. Establishing the accuracy of visual inspection alone is critical to understating the potential contribution of additional tests to assist in the diagnosis of melanoma., Objectives: To determine the diagnostic accuracy of visual inspection for the detection of cutaneous invasive melanoma and atypical intraepidermal melanocytic variants in adults with limited prior testing and in those referred for further evaluation of a suspicious lesion. Studies were separated according to whether the diagnosis was recorded face-to-face (in-person) or based on remote (image-based) assessment., Search Methods: We undertook a comprehensive search of the following databases from inception up to August 2016: CENTRAL; CINAHL; CPCI; Zetoc; Science Citation Index; US National Institutes of Health Ongoing Trials Register; NIHR Clinical Research Network Portfolio Database; and the World Health Organization International Clinical Trials Registry Platform. We studied reference lists and published systematic review articles., Selection Criteria: Test accuracy studies of any design that evaluated visual inspection in adults with lesions suspicious for melanoma, compared with a reference standard of either histological confirmation or clinical follow-up. We excluded studies reporting data for 'clinical diagnosis' where dermoscopy may or may not have been used., Data Collection and Analysis: Two review authors independently extracted all data using a standardised data extraction and quality assessment form (based on QUADAS-2). We contacted authors of included studies where information related to the target condition or diagnostic threshold were missing. We estimated summary sensitivities and specificities per algorithm and threshold using the bivariate hierarchical model. We investigated the impact of: in-person test interpretation; use of a purposely developed algorithm to assist diagnosis; and observer expertise., Main Results: We included 49 publications reporting on a total of 51 study cohorts with 34,351 lesions (including 2499 cases), providing 134 datasets for visual inspection. Across almost all study quality domains, the majority of study reports provided insufficient information to allow us to judge the risk of bias, while in three of four domains that we assessed we scored concerns regarding applicability of study findings as 'high'. Selective participant recruitment, lack of detail regarding the threshold for deciding on a positive test result, and lack of detail on observer expertise were particularly problematic.Attempts to analyse studies by degree of prior testing were hampered by a lack of relevant information and by the restricted inclusion of lesions selected for biopsy or excision. Accuracy was generally much higher for in-person diagnosis compared to image-based evaluations (relative diagnostic odds ratio of 8.54, 95% CI 2.89 to 25.3, P < 0.001). Meta-analysis of in-person evaluations that could be clearly placed on the clinical pathway showed a general trade-off between sensitivity and specificity, with the highest sensitivity (92.4%, 95% CI 26.2% to 99.8%) and lowest specificity (79.7%, 95% CI 73.7% to 84.7%) observed in participants with limited prior testing (n = 3 datasets). Summary sensitivities were lower for those referred for specialist assessment but with much higher specificities (e.g. sensitivity 76.7%, 95% CI 61.7% to 87.1%) and specificity 95.7%, 95% CI 89.7% to 98.3%) for lesions selected for excision, n = 8 datasets). These differences may be related to differences in the spectrum of included lesions, differences in the definition of a positive test result, or to variations in observer expertise. We did not find clear evidence that accuracy is improved by the use of any algorithm to assist diagnosis in all settings. Attempts to examine the effect of observer expertise in melanoma diagnosis were hindered due to poor reporting., Authors' Conclusions: Visual inspection is a fundamental component of the assessment of a suspicious skin lesion; however, the evidence suggests that melanomas will be missed if visual inspection is used on its own. The evidence to support its accuracy in the range of settings in which it is used is flawed and very poorly reported. Although published algorithms do not appear to improve accuracy, there is insufficient evidence to suggest that the 'no algorithm' approach should be preferred in all settings. Despite the volume of research evaluating visual inspection, further prospective evaluation of the potential added value of using established algorithms according to the prior testing or diagnostic difficulty of lesions may be warranted.
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- 2018
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47. Dermoscopy, with and without visual inspection, for diagnosing melanoma in adults.
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Dinnes J, Deeks JJ, Chuchu N, Ferrante di Ruffano L, Matin RN, Thomson DR, Wong KY, Aldridge RB, Abbott R, Fawzy M, Bayliss SE, Grainge MJ, Takwoingi Y, Davenport C, Godfrey K, Walter FM, and Williams HC
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- Adult, Algorithms, Biopsy, Humans, Melanoma diagnostic imaging, Melanoma pathology, Sensitivity and Specificity, Skin pathology, Skin Neoplasms diagnostic imaging, Skin Neoplasms pathology, Melanoma, Cutaneous Malignant, Dermoscopy, Melanoma diagnosis, Physical Examination methods, Skin Neoplasms diagnosis
- Abstract
Background: Melanoma has one of the fastest rising incidence rates of any cancer. It accounts for a small percentage of skin cancer cases but is responsible for the majority of skin cancer deaths. Although history-taking and visual inspection of a suspicious lesion by a clinician are usually the first in a series of 'tests' to diagnose skin cancer, dermoscopy has become an important tool to assist diagnosis by specialist clinicians and is increasingly used in primary care settings. Dermoscopy is a magnification technique using visible light that allows more detailed examination of the skin compared to examination by the naked eye alone. Establishing the additive value of dermoscopy over and above visual inspection alone across a range of observers and settings is critical to understanding its contribution for the diagnosis of melanoma and to future understanding of the potential role of the growing number of other high-resolution image analysis techniques., Objectives: To determine the diagnostic accuracy of dermoscopy alone, or when added to visual inspection of a skin lesion, for the detection of cutaneous invasive melanoma and atypical intraepidermal melanocytic variants in adults. We separated studies according to whether the diagnosis was recorded face-to-face (in-person), or based on remote (image-based), assessment., Search Methods: We undertook a comprehensive search of the following databases from inception up to August 2016: CENTRAL; MEDLINE; Embase; CINAHL; CPCI; Zetoc; Science Citation Index; US National Institutes of Health Ongoing Trials Register; NIHR Clinical Research Network Portfolio Database; and the World Health Organization International Clinical Trials Registry Platform. We studied reference lists and published systematic review articles., Selection Criteria: Studies of any design that evaluated dermoscopy in adults with lesions suspicious for melanoma, compared with a reference standard of either histological confirmation or clinical follow-up. Data on the accuracy of visual inspection, to allow comparisons of tests, was included only if reported in the included studies of dermoscopy., Data Collection and Analysis: Two review authors independently extracted all data using a standardised data extraction and quality assessment form (based on QUADAS-2). We contacted authors of included studies where information related to the target condition or diagnostic threshold were missing. We estimated accuracy using hierarchical summary receiver operating characteristic (SROC),methods. Analysis of studies allowing direct comparison between tests was undertaken. To facilitate interpretation of results, we computed values of sensitivity at the point on the SROC curve with 80% fixed specificity and values of specificity with 80% fixed sensitivity. We investigated the impact of in-person test interpretation; use of a purposely developed algorithm to assist diagnosis; observer expertise; and dermoscopy training., Main Results: We included a total of 104 study publications reporting on 103 study cohorts with 42,788 lesions (including 5700 cases), providing 354 datasets for dermoscopy. The risk of bias was mainly low for the index test and reference standard domains and mainly high or unclear for participant selection and participant flow. Concerns regarding the applicability of study findings were largely scored as 'high' concern in three of four domains assessed. Selective participant recruitment, lack of reproducibility of diagnostic thresholds and lack of detail on observer expertise were particularly problematic.The accuracy of dermoscopy for the detection of invasive melanoma or atypical intraepidermal melanocytic variants was reported in 86 datasets; 26 for evaluations conducted in person (dermoscopy added to visual inspection), and 60 for image-based evaluations (diagnosis based on interpretation of dermoscopic images). Analyses of studies by prior testing revealed no obvious effect on accuracy; analyses were hampered by the lack of studies in primary care, lack of relevant information and the restricted inclusion of lesions selected for biopsy or excision. Accuracy was higher for in-person diagnosis compared to image-based evaluations (relative diagnostic odds ratio (RDOR) 4.6, 95% confidence interval (CI) 2.4 to 9.0; P < 0.001).We compared accuracy for (a), in-person evaluations of dermoscopy (26 evaluations; 23,169 lesions and 1664 melanomas),versus visual inspection alone (13 evaluations; 6740 lesions and 459 melanomas), and for (b), image-based evaluations of dermoscopy (60 evaluations; 13,475 lesions and 2851 melanomas),versus image-based visual inspection (11 evaluations; 1740 lesions and 305 melanomas). For both comparisons, meta-analysis found dermoscopy to be more accurate than visual inspection alone, with RDORs of (a), 4.7 (95% CI 3.0 to 7.5; P < 0.001), and (b), 5.6 (95% CI 3.7 to 8.5; P < 0.001). For a), the predicted difference in sensitivity at a fixed specificity of 80% was 16% (95% CI 8% to 23%; 92% for dermoscopy + visual inspection versus 76% for visual inspection), and predicted difference in specificity at a fixed sensitivity of 80% was 20% (95% CI 7% to 33%; 95% for dermoscopy + visual inspection versus 75% for visual inspection). For b) the predicted differences in sensitivity was 34% (95% CI 24% to 46%; 81% for dermoscopy versus 47% for visual inspection), at a fixed specificity of 80%, and predicted difference in specificity was 40% (95% CI 27% to 57%; 82% for dermoscopy versus 42% for visual inspection), at a fixed sensitivity of 80%.Using the median prevalence of disease in each set of studies ((a), 12% for in-person and (b), 24% for image-based), for a hypothetical population of 1000 lesions, an increase in sensitivity of (a), 16% (in-person), and (b), 34% (image-based), from using dermoscopy at a fixed specificity of 80% equates to a reduction in the number of melanomas missed of (a), 19 and (b), 81 with (a), 176 and (b), 152 false positive results. An increase in specificity of (a), 20% (in-person), and (b), 40% (image-based), at a fixed sensitivity of 80% equates to a reduction in the number of unnecessary excisions from using dermoscopy of (a), 176 and (b), 304 with (a), 24 and (b), 48 melanomas missed.The use of a named or published algorithm to assist dermoscopy interpretation (as opposed to no reported algorithm or reported use of pattern analysis), had no significant impact on accuracy either for in-person (RDOR 1.4, 95% CI 0.34 to 5.6; P = 0.17), or image-based (RDOR 1.4, 95% CI 0.60 to 3.3; P = 0.22), evaluations. This result was supported by subgroup analysis according to algorithm used. We observed higher accuracy for observers reported as having high experience and for those classed as 'expert consultants' in comparison to those considered to have less experience in dermoscopy, particularly for image-based evaluations. Evidence for the effect of dermoscopy training on test accuracy was very limited but suggested associated improvements in sensitivity., Authors' Conclusions: Despite the observed limitations in the evidence base, dermoscopy is a valuable tool to support the visual inspection of a suspicious skin lesion for the detection of melanoma and atypical intraepidermal melanocytic variants, particularly in referred populations and in the hands of experienced users. Data to support its use in primary care are limited, however, it may assist in triaging suspicious lesions for urgent referral when employed by suitably trained clinicians. Formal algorithms may be of most use for dermoscopy training purposes and for less expert observers, however reliable data comparing approaches using dermoscopy in person are lacking.
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- 2018
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48. Cohort Profile: Ifanadiana Health Outcomes and Prosperity longitudinal Evaluation (IHOPE).
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Miller AC, Garchitorena A, Rabeza V, Randriamanambintsoa M, Rahaniraka Razanadrakato HT, Cordier L, Ouenzar MA, Murray MB, Thomson DR, and Bonds MH
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- Adolescent, Adult, Anthropometry, Child, Child Development, Child, Preschool, Female, Humans, Infant, Infant, Newborn, Intersectoral Collaboration, Madagascar, Male, Middle Aged, Patient Acceptance of Health Care, Prospective Studies, Sampling Studies, Socioeconomic Factors, Young Adult, Family Characteristics, Outcome Assessment, Health Care statistics & numerical data
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- 2018
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49. Using routinely collected laboratory data to identify high rifampicin-resistant tuberculosis burden communities in the Western Cape Province, South Africa: A retrospective spatiotemporal analysis.
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McIntosh AI, Jenkins HE, White LF, Barnard M, Thomson DR, Dolby T, Simpson J, Streicher EM, Kleinman MB, Ragan EJ, van Helden PD, Murray MB, Warren RM, and Jacobson KR
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- Adult, Antitubercular Agents therapeutic use, Data Collection, Epidemiological Monitoring, Female, Geographic Information Systems, Humans, Incidence, Isoniazid therapeutic use, Male, Retrospective Studies, Rifampin therapeutic use, South Africa epidemiology, Spatio-Temporal Analysis, Tuberculosis, Multidrug-Resistant drug therapy, Tuberculosis, Multidrug-Resistant epidemiology
- Abstract
Background: South Africa has the highest tuberculosis incidence globally (781/100,000), with an estimated 4.3% of cases being rifampicin resistant (RR). Control and elimination strategies will require detailed spatial information to understand where drug-resistant tuberculosis exists and why it persists in those communities. We demonstrate a method to enable drug-resistant tuberculosis monitoring by identifying high-burden communities in the Western Cape Province using routinely collected laboratory data., Methods and Findings: We retrospectively identified cases of microbiologically confirmed tuberculosis and RR-tuberculosis from all biological samples submitted for tuberculosis testing (n = 2,219,891) to the Western Cape National Health Laboratory Services (NHLS) between January 1, 2008, and June 30, 2013. Because the NHLS database lacks unique patient identifiers, we performed a series of record-linking processes to match specimen records to individual patients. We counted an individual as having a single disease episode if their positive samples came from within two years of each other. Cases were aggregated by clinic location (n = 302) to estimate the percentage of tuberculosis cases with rifampicin resistance per clinic. We used inverse distance weighting (IDW) to produce heatmaps of the RR-tuberculosis percentage across the province. Regression was used to estimate annual changes in the RR-tuberculosis percentage by clinic, and estimated average size and direction of change was mapped. We identified 799,779 individuals who had specimens submitted from mappable clinics for testing, of whom 222,735 (27.8%) had microbiologically confirmed tuberculosis. The study population was 43% female, the median age was 36 years (IQR 27-44), and 10,255 (4.6%, 95% CI: 4.6-4.7) cases had documented rifampicin resistance. Among individuals with microbiologically confirmed tuberculosis, 8,947 (4.0%) had more than one disease episode during the study period. The percentage of tuberculosis cases with rifampicin resistance documented among these individuals was 11.4% (95% CI: 10.7-12.0). Overall, the percentage of tuberculosis cases that were RR-tuberculosis was spatially heterogeneous, ranging from 0% to 25% across the province. Our maps reveal significant yearly fluctuations in RR-tuberculosis percentages at several locations. Additionally, the directions of change over time in RR-tuberculosis percentage were not uniform. The main limitation of this study is the lack of unique patient identifiers in the NHLS database, rendering findings to be estimates reliant on the accuracy of the person-matching algorithm., Conclusions: Our maps reveal striking spatial and temporal heterogeneity in RR-tuberculosis percentages across this province. We demonstrate the potential to monitor RR-tuberculosis spatially and temporally with routinely collected laboratory data, enabling improved resource targeting and more rapid locally appropriate interventions., Competing Interests: MBM is a member of the Editorial Board of PLOS Medicine. The authors declare no other competing interests exist.
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- 2018
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50. Early changes in intervention coverage and mortality rates following the implementation of an integrated health system intervention in Madagascar.
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Garchitorena A, Miller AC, Cordier LF, Rabeza VR, Randriamanambintsoa M, Razanadrakato HR, Hall L, Gikic D, Haruna J, McCarty M, Randrianambinina A, Thomson DR, Atwood S, Rich ML, Murray MB, Ratsirarson J, Ouenzar MA, and Bonds MH
- Abstract
Introduction: The Sustainable Development Goals framed an unprecedented commitment to achieve global convergence in child and maternal mortality rates through 2030. To meet those targets, essential health services must be scaled via integration with strengthened health systems. This is especially urgent in Madagascar, the country with the lowest level of financing for health in the world. Here, we present an interim evaluation of the first 2 years of a district-level health system strengthening (HSS) initiative in rural Madagascar, using estimates of intervention coverage and mortality rates from a district-wide longitudinal cohort., Methods: We carried out a district representative household survey at baseline of the HSS intervention in over 1500 households in Ifanadiana district. The first follow-up was after the first 2 years of the initiative. For each survey, we estimated maternal, newborn and child health (MNCH) coverage, healthcare inequalities and child mortality rates both in the initial intervention catchment area and in the rest of the district. We evaluated changes between the two areas through difference-in-differences analyses. We estimated annual changes in health centre per capita utilisation from 2013 to 2016., Results: The intervention was associated with 19.1% and 36.4% decreases in under-five and neonatal mortality, respectively, although these were not statistically significant. The composite coverage index (a summary measure of MNCH coverage) increased by 30.1%, with a notable 63% increase in deliveries in health facilities. Improvements in coverage were substantially larger in the HSS catchment area and led to an overall reduction in healthcare inequalities. Health centre utilisation rates in the catchment tripled for most types of care during the study period., Conclusion: At the earliest stages of an HSS intervention, the rapid improvements observed for Ifanadiana add to preliminary evidence supporting the untapped and poorly understood potential of integrated HSS interventions on population health., Competing Interests: Competing interests: Some authors are current or former employees of institutions discussed in this article, including the non-governmental organisation PIVOT and the Government of Madagascar. These affiliations are explicitly listed in the article.
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- 2018
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