81 results on '"Thomson BJ"'
Search Results
2. Low incidence of human herpesvirus 8 in stem cell collections from myeloma patients
- Author
-
Cull, GM, Carter, GI, Timms, JM, Thomson, BJ, Russell, NH, and Haynes, AP
- Published
- 1999
- Full Text
- View/download PDF
3. Osteopontin is a novel downstream target of SOX9 with diagnostic implications for progression of liver fibrosis in humans
- Author
-
Pritchett, J, Harvey, E, Athwal, V, Berry, A, Rowe, C, Oakley, F, Moles, A, Mann, DA, Bobola, N, Sharrocks, AD, Thomson, BJ, Zaitoun, AM, Irving, WL, Guha, IN, Hanley, NA, Hanley, KP, Pritchett, J, Harvey, E, Athwal, V, Berry, A, Rowe, C, Oakley, F, Moles, A, Mann, DA, Bobola, N, Sharrocks, AD, Thomson, BJ, Zaitoun, AM, Irving, WL, Guha, IN, Hanley, NA, and Hanley, KP
- Abstract
Osteopontin (OPN) is an important component of the extracellular matrix (ECM), which promotes liver fibrosis and has been described as a biomarker for its severity. Previously, we have demonstrated that Sex-determining region Y-box 9 (SOX9) is ectopically expressed during activation of hepatic stellate cells (HSC) when it is responsible for the production of type 1 collagen, which causes scar formation in liver fibrosis. Here, we demonstrate that SOX9 regulates OPN. During normal development and in the mature liver, SOX9 and OPN are coexpressed in the biliary duct. In rodent and human models of fibrosis, both proteins were increased and colocalized to fibrotic regions in vivo and in culture-activated HSCs. SOX9 bound a conserved upstream region of the OPN gene, and abrogation of Sox9 in HSCs significantly decreased OPN production. Hedgehog (Hh) signaling has previously been shown to regulate OPN expression directly by glioblastoma (GLI) 1. Our data indicate that in models of liver fibrosis, Hh signaling more likely acts through SOX9 to modulate OPN. In contrast to Gli2 and Gli3, Gli1 is sparse in HSCs and is not increased upon activation. Furthermore, reduction of GLI2, but not GLI3, decreased the expression of both SOX9 and OPN, whereas overexpressing SOX9 or constitutively active GLI2 could rescue the antagonistic effects of cyclopamine on OPN expression. Conclusion: These data reinforce SOX9, downstream of Hh signaling, as a core factor mediating the expression of ECM components involved in liver fibrosis. Understanding the role and regulation of SOX9 during liver fibrosis will provide insight into its potential modulation as an antifibrotic therapy or as a means of identifying potential ECM targets, similar to OPN, as biomarkers of fibrosis. (HEPATOLOGY 2012;56:1108–1116)
- Published
- 2012
4. Cyclometallation reactions. IX. 2-(Phenylazo)phenyl complexes of iridium(III).
- Author
-
Bruce, MI, Goodall, BL, Stone, FGA, and Thomson, BJ
- Abstract
Iridiurn(111) complexes containing chelating 2-(pheny1azo)phenyl ligands have been obtained by oxidative addition of azobenzene or 2-bromoazobenzene to IrCl(CO)(PPh3)2; some reactions of these derivatives are also described.
- Published
- 1974
- Full Text
- View/download PDF
5. The Sequence and Gene Organization of Human Herpes Virus-6 Resembles that of Human Cytomegalovirus
- Author
-
Thomson, BJ, primary, Honess, RW, additional, Craxton, MA, additional, Gompels, UA, additional, Efstathiou, S, additional, Lawrence, G, additional, and Barrell, BG, additional
- Published
- 1989
- Full Text
- View/download PDF
6. Comparing the Accuracy of Conventional Gypsum and 3D-Printed Dental Casts Using Three-Dimensional Analysis.
- Author
-
Thomson BJ, Hu E, and Masterson R
- Abstract
Introduction: Dental impressions and casts play a critical role in dental care, facilitating diagnoses and the fabrication of prostheses. Traditional methods of fabrication involve elastomeric materials that are more prone to errors and patient discomfort. Digital advancements offer promising alternatives, yet their accuracy and applicability to military dentistry remain under-explored. This study evaluates the accuracy of digital casts produced with material available in the Military Health System compared to conventional methods., Materials and Methods: Using a digital (n = 10) and analog (n = 10) methodology casts were fabricated from a reference cast (n = 1). The reference and cast samples were scanned with a reference scanner to generate stereolithography files. These files were used to generate full arch, single crown, fixed dental prosthesis, and inlay digital casts which were then compared using a three-dimensional (3D) comparison software to evaluate accuracy. Root mean square values were obtained, giving a quantitative evaluation of the deviation of each sample from the reference cast. Statistical analysis consisted of a Shapiro-Wilk and Levene test to account for homogeneity of variances in each group. An ANOVA and Tukey post-hoc test were used to determine differences in accuracy among the full arch and a two-way ANOVA and Tukey post-hoc test evaluated differences in trueness among the casts of the individual preparations., Results: Analog full arch casts had an average root mean square of 106 ±19.18 µm when examining trueness and 12 ±2.58 µm for precision. Digital full arch casts had an average root mean square of 51.9 ±5.39 µm when examining trueness and 4.2 ±1.57 µm for precision. Overall digital casts surpassed analog counterparts in accuracy. Fixed dental prostheses were found to be the only group, which showed no statistically significant difference between digital and analog., Conclusion: These findings validate the potential of digital workflows in enhancing the speed and accuracy of dental care in the Military Health System, while underscoring the need for further exploration and refinement in specific clinical contexts., (© The Association of Military Surgeons of the United States 2024. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site–for further information please contact journals.permissions@oup.com.)
- Published
- 2024
- Full Text
- View/download PDF
7. How to do a single-stage perforator based nasolabial flap for reconstruction of early-stage tongue cancer.
- Author
-
Arahill-Whitham JB, Thomson BJ, Malayil V, and Surendra V
- Subjects
- Humans, Tongue surgery, Tongue Neoplasms surgery, Plastic Surgery Procedures, Perforator Flap, Carcinoma, Squamous Cell surgery
- Abstract
Tongue cancers are one of the most common subsites of malignancy in the head and neck, of which the majority are squamous cell carcinoma (SCC). Reconstruction following ablative surgery is challenging because of the role of the tongue in articulation, deglutition and protection of the airway. Microvascular free flaps are the current gold standard of reconstruction but are not feasible in all patients. Local and regional flaps provide a less challenging, faster alternative and may be more appropriate in comorbid patients with high anaesthetic risk as well as those with previously irradiated neck and poor vasculature. Nasolabial flaps are not commonly used for tongue reconstruction, requiring a two-staged procedure to allow division of the pedicle. We submit a modification of nasolabial flap as an inferiorly based, islanded perforator flap. This allows for single-stage reconstruction of tongue and floor of the mouth defects following resection of early-stage tongue cancers., (© 2023 Royal Australasian College of Surgeons.)
- Published
- 2024
- Full Text
- View/download PDF
8. CBD hydroxyquinone photo-isomerises to a highly reactive intermediate.
- Author
-
Thomson BJ, Hanna S, Schwarzenberg A, Kiani P, Bizzotto D, Kennepohl P, Davies A, Roggen M, and Sammis GM
- Abstract
The legalisation of hemp has led to wide commercial availability of cannabidiol (CBD)-containing products. Here we show that the CBD-hydroxyquinone (HU-331), a readily formed oxidation product and common impurity in CBD isolates, undergoes a previously unknown photo-isomerisation to produce a highly reactive intermediate in solution. Studies supported by calculations indicate that this intermediate rapidly reacts with oxygen to form a multitude of cannabinoid products. The purple colour observed in light-aged CBD-containing solutions is largely due to the anions of these by-products and is not significantly due to the HU-331 anion. Our findings suggest that these uncharacterized cannabinoid derivatives can be present in CBD-containing e-liquids and solutions that have been stored under ambient light conditions, calling for quality control processes that manage HU-331 contamination., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
9. The Effect of Universal Newborn Hearing Screening on Spoken Language after Cochlear Implantation.
- Author
-
Amir I, Thomson BJ, Herrod J, Souter MA, Mustard J, Pearson JF, and Bird P
- Subjects
- Child, Infant, Newborn, Child, Preschool, Humans, Retrospective Studies, Language Development, Hearing, Cochlear Implantation, Cochlear Implants, Deafness diagnosis, Deafness surgery, Deafness rehabilitation
- Abstract
Background: The universal newborn hearing screening (UNHS) was fully implemented across New Zealand by 2010 to improve outcomes for children with prelingual deafness. A previous audit undertaken by our center, the Southern Cochlear Implant Programme (SCIP), demonstrated that UNHS has significantly reduced the time to referral and surgery for cochlear implants in these children., Aims: This study aims to evaluate the relationship between earlier implantation and language development, the time taken to achieve age-appropriate language, and the effect of socioeconomic status on language skills., Methods: This is a retrospective cohort study comparing prelingual children with severe to profound bilateral hearing loss who underwent cochlear implantation in SCIP before and after the introduction of the UNHS. The language outcomes were assessed using the Preschool Language Scale and/or the Peabody Picture Vocabulary Test. For the purpose of our study, the standard scores of these tests were expressed as global language scores (GLS). GLSs between 85 and 115 are considered within normal range for age. The socioeconomic status was categorized based on the New Zealand Index of Deprivation (NZDep)., Results: Children in the post-UNHS group (46/95 children) were referred to SCIP and received CI at a significantly earlier age (mean = 7 vs 20 mo, p = 8.95E-10, and mean = 13 vs. 24.7 mo, p = 1.43E-07). At 2 years postimplantation, the GLS was significantly higher in the post-UNHS group (mean scores = 93.3 vs. 79.1, p = 0.0213). The scores remained statistically higher in the post-UNHS group when assessed at 3 and 4 years postimplantation. At 2, 3, and 4 years postimplantation, there is a significant linear decrease in GLS with increasing age at cochlear implantation. We found no correlation between NZDep and GLS., Conclusion: Children identified through UNHS have the advantage of earlier diagnosis, earlier hearing intervention, and longer duration with the implants, and they can achieve age-appropriate spoken language after 2 years of implantation., Competing Interests: The authors disclose no conflicts of interest., (Copyright © 2022, Otology & Neurotology, Inc.)
- Published
- 2023
- Full Text
- View/download PDF
10. Sulfur(iv) reagents for the SuFEx-based synthesis of substituted sulfamate esters.
- Author
-
Downey KT, Mo JY, Lai J, Thomson BJ, and Sammis GM
- Abstract
Sulfur(vi) fluoride exchange chemistry has been reported to be effective at synthesizing valuable sulfur(vi) functionalities through sequential nucleophilic additions, yet oxygen-based nucleophiles are limited in this approach to phenolic derivatives. Herein, we report a new sulfur(iv) fluoride exchange strategy to access synthetically challenging substituted sulfamate esters from alkyl alcohols and amines. We also report the development of a non-gaseous, sulfur(iv) fluoride exchange reagent, N -methylimidazolium sulfinyl fluoride hexafluorophosphate (MISF). By leveraging the reactivity of the sulfur(iv) center of this novel reagent, the sequential addition of alcohols and amines to MISF followed by oxidation afforded the desired substituted sulfamates in 40-83% yields after two steps. This new strategy expands the scope of SuFEx chemistry by increasing the accessibility of underdeveloped -S(O)F intermediates for future explorations., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2023
- Full Text
- View/download PDF
11. Facile synthesis of sulfonyl fluorides from sulfonic acids.
- Author
-
Thomson BJ, Khasnavis SR, Grigorian EC, Krishnan R, Yassa TD, Lee K, Sammis GM, and Ball ND
- Subjects
- Salts, Sodium, Sulfonic Acids, Fluorides
- Abstract
Herein, we demonstrate two complementary strategies for the syntheses of sulfonyl fluorides using sulfonic acids and their salts. One strategy involves the conversion of sulfonic acid sodium salts to sulfonyl fluorides using thionyl fluoride in 90-99% yields in one hour. Lessons learned from the mechanism of this reaction also have enabled a complementary deoxyfluorination of sulfonic acids using Xtalfluor-E® - a bench stable solid - allowing for the conversion of both aryl and alkyl sulfonic acids and salts to sulfonyl fluorides in 41-94% yields. Notably, using Xtalfluor-E® enabled milder conditions and the use of both sulfonic acids and their sodium salts.
- Published
- 2023
- Full Text
- View/download PDF
12. Rapid and column-free syntheses of acyl fluorides and peptides using ex situ generated thionyl fluoride.
- Author
-
Lee C, Thomson BJ, and Sammis GM
- Abstract
Thionyl fluoride (SOF
2 ) was first isolated in 1896, but there have been less than 10 subsequent reports of its use as a reagent for organic synthesis. This is partly due to a lack of facile, lab-scale methods for its generation. Herein we report a novel protocol for the ex situ generation of SOF2 and subsequent demonstration of its ability to access both aliphatic and aromatic acyl fluorides in 55-98% isolated yields under mild conditions and short reaction times. We further demonstrate its aptitude in amino acid couplings, with a one-pot, column-free strategy that affords the corresponding dipeptides in 65-97% isolated yields with minimal to no epimerization. The broad scope allows for a wide range of protecting groups and both natural and unnatural amino acids. Finally, we demonstrated that this new method can be used in sequential liquid phase peptide synthesis (LPPS) to afford tri-, tetra-, penta-, and decapeptides in 14-88% yields without the need for column chromatography. We also demonstrated that this new method is amenable to solid phase peptide synthesis (SPPS), affording di- and pentapeptides in 80-98% yields., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
- Full Text
- View/download PDF
13. Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom.
- Author
-
Chappell JG, Tsoleridis T, Clark G, Berry L, Holmes N, Moore C, Carlile M, Sang F, Debebe BJ, Wright V, Irving WL, Thomson BJ, Boswell TCJ, Willingham I, Joseph A, Smith W, Khakh M, Fleming VM, Lister MM, Howson-Wells HC, Holmes EC, Loose MW, Ball JK, McClure CP, and On Behalf Of The Cog-Uk Consortium
- Subjects
- Adult, Aged, COVID-19 epidemiology, COVID-19 transmission, COVID-19 Nucleic Acid Testing, Female, Humans, Male, Mass Screening methods, Middle Aged, Phylogeny, RNA, Viral genetics, Retrospective Studies, SARS-CoV-2 genetics, United Kingdom epidemiology, COVID-19 diagnosis, COVID-19 virology, Respiratory System virology, SARS-CoV-2 isolation & purification
- Abstract
In the early phases of the SARS coronavirus type 2 (SARS-CoV-2) pandemic, testing focused on individuals fitting a strict case definition involving a limited set of symptoms together with an identified epidemiological risk, such as contact with an infected individual or travel to a high-risk area. To assess whether this impaired our ability to detect and control early introductions of the virus into the UK, we PCR-tested archival specimens collected on admission to a large UK teaching hospital who retrospectively were identified as having a clinical presentation compatible with COVID-19. In addition, we screened available archival specimens submitted for respiratory virus diagnosis, and dating back to early January 2020, for the presence of SARS-CoV-2 RNA. Our data provides evidence for widespread community circulation of SARS-CoV-2 in early February 2020 and into March that was undetected at the time due to restrictive case definitions informing testing policy. Genome sequence data showed that many of these early cases were infected with a distinct lineage of the virus. Sequences obtained from the first officially recorded case in Nottinghamshire - a traveller returning from Daegu, South Korea - also clustered with these early UK sequences suggesting acquisition of the virus occurred in the UK and not Daegu. Analysis of a larger sample of sequences obtained in the Nottinghamshire area revealed multiple viral introductions, mainly in late February and through March. These data highlight the importance of timely and extensive community testing to prevent future widespread transmission of the virus.
- Published
- 2021
- Full Text
- View/download PDF
14. Platelet function testing in patients with post-operative tonsillectomy bleeding may be a useful early identifier of inherited platelet function disorders.
- Author
-
James TW, Thomson BJ, Naumann DN, and Stevenson DS
- Abstract
Background: Post-tonsillectomy bleeding is the most frequent complication of tonsillectomy. Inherited platelet function disorders have an estimated prevalence of 1 per cent. Any association between post-tonsillectomy bleeds and undiagnosed inherited platelet function disorders has not been investigated before., Objectives: To assess the prevalence of inherited platelet function disorders in a cohort of post-tonsillectomy bleed patients., Methods: An observational cohort study was conducted using hospital digital records. Platelet function analyser 100 ('PFA-100') closure time was tested on post-tonsillectomy bleed patients who presented to hospital., Results: Between 2013 and 2017, 9 of 91 post-tonsillectomy bleed patients who underwent platelet function analyser 100 testing (9.89 per cent) had positive results. Five patients (5.49 per cent) had undiagnosed inherited platelet function disorders. Four patients had false positive results secondary to a non-steroidal anti-inflammatory drug effect (specificity of 95.3 per cent) proven by repeat testing six weeks later, off medication. The false negative rate was 0 per cent., Conclusion: The prevalence of inherited platelet function disorders in our post-tonsillectomy bleed cohort is five-fold higher than in the general population. Platelet function analyser 100 testing when patients present with a post-tonsillectomy bleed allows management of their inherited platelet function disorder.
- Published
- 2020
- Full Text
- View/download PDF
15. How do people in prison feel about opt-out hepatitis C virus testing?
- Author
-
Jack K, Linsley P, Thomson BJ, and Irving WL
- Subjects
- Hepacivirus, Humans, Prisons, Social Stigma, Hepatitis C diagnosis, Hepatitis C epidemiology, Prisoners
- Abstract
The prison population is central to the campaign to eliminate hepatitis C virus as a public health threat. In the UK, this has led to the introduction of a national 'opt-out' policy, requiring people in prison to be tested for HCV unless they decline, with a target to test 75% of those admitted. However, in a representative prison estate in the East Midlands of England (20,000 prison entrants per annum) testing rates were only 13.4%. This qualitative study explains why the rates of test uptake are so far short of target. This qualitative study examines the experiences of 45 people in prison about hepatitis C virus testing in an English category C (low security) prison. The data collection method was semi-structured interviews. The data were coded and analysed according to the research questions, and interpretation of the data was aided by the use of a thematic network approach. The themes Fear, Insufficient Knowledge, Stigma, Privacy, Choice and Prison Life emerged as the principal barriers to test uptake. Test Uptake Facilitators that promoted testing were identified by participants and benefits presented of prison health care being a Health Farm. In order to increase hepatitis C virus test uptake, significant changes and flexibility in the timing, location, and staff deployed to test are required. Providing information to people in prison about hepatitis C virus transmission and treatment may reduce fears and enable the test uptake target to be met and sustained., (© 2020 John Wiley & Sons Ltd.)
- Published
- 2020
- Full Text
- View/download PDF
16. Testing for hepatitis C virus infection in UK prisons: What actually happens?
- Author
-
Jack K, Thomson BJ, and Irving WL
- Subjects
- Adolescent, Dried Blood Spot Testing, Female, Hepacivirus pathogenicity, Hepatitis C blood, Hepatitis C epidemiology, Humans, Male, National Health Programs standards, National Health Programs statistics & numerical data, Prisons, United Kingdom epidemiology, Young Adult, Hepatitis C diagnosis, Prisoners
- Abstract
Prisons are a key demographic in the drive to eradicate hepatitis C virus (HCV) as a major public health threat. We have assessed the impact of the recently introduced national opt-out policy on the current status of HCV testing in 14 prisons in the East Midlands (UK). We analysed testing rates pre- and post-introduction of opt-out testing, together with face-to-face interviews with prison healthcare and management staff in each prison. In the year pre-opt-out, 1972 people in prison (PIP) were tested, compared to 3440 in the year following opt-out. From July 2016 to June 2017, 2706 people were tested, representing 13.5% of all prison entrants (median 16.6%, range 7.6%-40.7%). Factors correlating with testing rates were as follows: pre-admission location of the PIP (another prison or the community, OR 2.2, 95% CI 1.9-2.3, P < 0.001); whether the PIP could access health care independently of prison officers (OR 1.7, 95% CI 1.5-1.8, P < 0.001); the absence of out-reach services for HCV treatment (OR 1.3, 95% CI 1.2-1.5, P < 0.001), whether >50% of PIP reported ease of access to a nurse (OR 2.0, 95% CI 1.8-2.2, P < 0.001), and whether prison health care was supplied by private or NHS providers (OR 1.3, 95% CI 1.2-1.5, P < 0.001). Testing rates remained far below the minimum national opt-out target of 50%. Inadequacy of healthcare facilities and constraints imposed by adherence to prison regimens were cited by healthcare and management staff at all prisons. Without radical change, the prison estate may be intrinsically incapable of supporting NHSE to deliver the HCV elimination strategy., (© 2019 John Wiley & Sons Ltd.)
- Published
- 2019
- Full Text
- View/download PDF
17. Short-term changes observed in multiparametric liver MRI following therapy with direct-acting antivirals in chronic hepatitis C virus patients.
- Author
-
Bradley C, Scott RA, Cox E, Palaniyappan N, Thomson BJ, Ryder SD, Irving WL, Aithal GP, Guha IN, and Francis S
- Subjects
- Adult, Disease Progression, Female, Hepacivirus isolation & purification, Hepatitis C, Chronic complications, Hepatitis C, Chronic virology, Humans, Liver Circulation, Liver Cirrhosis virology, Magnetic Resonance Imaging, Male, Middle Aged, Prospective Studies, Sustained Virologic Response, Antiviral Agents therapeutic use, Hepatitis C, Chronic diagnostic imaging, Hepatitis C, Chronic drug therapy, Liver diagnostic imaging
- Abstract
Methods: We applied multiparametric MRI to assess changes in liver composition, perfusion and blood flow in 17 patients before direct-acting antiviral (DAA) therapy and after treatment completion (within 12 weeks of last DAA tablet swallowed)., Results: We observed changes in hepatic composition indicated by a reduction in both liver longitudinal relaxation time (T1, 35 ± 4 ms), transverse relaxation time (T2, 2.5 ± 0.8 ms; T2* 3.0 ± 0.7 ms), and liver perfusion (28.1 ± 19.7 ml/100 g/min) which we suggest are linked to reduced pro-inflammatory milieu, including interstitial oedema, within the liver. No changes were observed in liver or spleen blood flow, splenic perfusion, or superior mesenteric artery blood flow., Conclusion: For the first time, our study has shown that treatment of HCV with DAAs in patients with cirrhosis leads to an acute reduction in liver T1, T2 and T2* and an increase in liver perfusion measured using MR parameters. The ability of MRI to characterise changes in the angio-architecture of patients with cirrhosis after intervention in the short term will enhance our understanding of the natural history of regression of liver disease and potentially influence clinical decision algorithms., Key Points: • DAAs have revolutionised the treatment of hepatitis C and achieve sustained virological response in over 95% of patients, even with liver cirrhosis. • Currently available non-invasive measures of liver fibrosis are not accurate after HCV treatment with DAAs, this prospective single-centre study has shown that MRI can sensitively measure changes within the liver, which could reflect the reduction in inflammation with viral clearance. • The ability of MRI to characterise changes in structural and haemodynamic MRI measures in the liver after intervention will enhance our understanding of the progression/regression of liver disease and could potentially influence clinical decision algorithms.
- Published
- 2019
- Full Text
- View/download PDF
18. The Hepatitis C Awareness Through to Treatment (HepCATT) study: improving the cascade of care for hepatitis C virus-infected people who inject drugs in England.
- Author
-
Harrison GI, Murray K, Gore R, Lee P, Sreedharan A, Richardson P, Hughes AJ, Wiselka M, Gelson W, Unitt E, Ratcliff K, Orton A, Trinder K, Simpson C, Ryder SD, Oelbaum S, Foster GR, Christian A, Smith S, Thomson BJ, Reynolds R, Harris M, Hickman M, and Irving WL
- Subjects
- Antiviral Agents therapeutic use, Continuity of Patient Care, England, Feasibility Studies, Hepatitis C, Chronic epidemiology, Hepatitis C, Chronic therapy, Humans, Nurse Specialists, Pilot Projects, Substance Abuse Treatment Centers, Substance Abuse, Intravenous epidemiology, Delivery of Health Care organization & administration, Gastroenterology statistics & numerical data, Hepatitis C, Chronic diagnosis, Referral and Consultation organization & administration, Substance Abuse, Intravenous therapy
- Abstract
Background and Aims: Previous studies have shown low rates of diagnosis and treatment of hepatitis C virus (HCV) infection in people who inject drugs (PWID). Our aims were to test the effect of a complex intervention [Hepatitis C Awareness Through to Treatment (HepCATT)] in drug and alcohol clinics-primarily, on engagement of HCV-positive PWID with therapy and, secondarily, on testing for HCV, referral to hepatology services and start of HCV treatment., Design and Setting: A non-randomized pilot study in three specialist addiction clinics in England comparing an intervention year (starting between September 2015 and February 2016) with a baseline year (2014), together with three control clinics., Participants: Analysis included all attendees at the intervention and control specialist addiction clinics identified as PWID., Intervention: The intervention comprised the placement of a half-time facilitator in each clinic for 12 months with the brief to increase diagnosis of HCV infection within clients at those services and the engagement of diagnosed individuals with an appropriate care pathway. The facilitator undertook various activities, which could include training of key workers, direct interaction with clients, streamlining and support for hepatology appointments and introduction of dried blood-spot testing., Measurements: For each clinic and period, we obtained the total number of clients and, as relevant, their status as PWID, tested for HCV, known HCV-positive, engaged with HCV therapy or treated., Findings: Compared with baseline, there was strong evidence that engagement with HCV therapy in the intervention year increased (P < 0.001) more in the HepCATT centres than controls, up
+ 31 percentage points [95% confidence interval (CI) = 19-43] versus -12 (CI = -31 to+ 6) and odds ratio (OR) = 9.99 (CI = 4.42-22.6) versus 0.35 (CI = 0.08-1.56). HepCATT centres also had greater increases in HCV testing (OR = 3.06 versus 0.78, P < 0.001), referral to hepatology (OR = 9.60 versus 0.56, P < 0.001) and treatment initiation (OR = 9.5 versus 0.74, P < 0.001)., Conclusions: Introducing a half-time facilitator into drug and alcohol clinics in England increased engagement of HCV-positive people who inject drugs with hepatitis C virus care pathways, with increased uptake also of testing, referral to hepatology and initiation of treatment., (© 2019 Society for the Study of Addiction.)- Published
- 2019
- Full Text
- View/download PDF
19. How much of the sediment in Gale crater's central mound was fluvially transported?
- Author
-
Thomson BJ, Buczkowski DL, Crumpler LS, Seelos KD, and Fassett CI
- Abstract
The origin of the sedimentary mound within Gale crater, the landing site for the Mars Science Laboratory rover Curiosity , remains enigmatic. Here we examine the total potential contribution of fluvial material by conducting a volume-based analysis. On the basis of these results, the mound can be divided into three zones: a lower, intermediate, and upper zone. The top boundary of the lowermost zone is defined by maximal contribution of water-lain sediments, which are ~13 to 20% of the total mound volume. The upper zone is defined by the elevation of the unbreached rim to the north (-2.46 km); sediments above this elevation cannot have been emplaced by flowing water. These volume balance calculations indicate that mechanisms other than flowing water are required to account for the overwhelming majority of the sediments transported into Gale crater. The most likely candidate process is settling from eolian suspension.
- Published
- 2019
- Full Text
- View/download PDF
20. Young adults' attitudes to sharing whole-genome sequencing information: a university-based survey.
- Author
-
Barnard P, Sharples S, Thomson BJ, and Garibaldi JM
- Subjects
- Family, Female, Humans, Male, Policy Making, Young Adult, Health Knowledge, Attitudes, Practice, Information Dissemination, Surveys and Questionnaires, Universities, Whole Genome Sequencing
- Abstract
Background: Genomic services are increasingly accessible to young adults starting their independent lives with responsibility for their self-care, yet their attitudes to sharing genomic information remain under-researched. This study explored attitudes of university-based 18-25 year-olds towards sharing personal whole-genome sequencing (WGS) information with relatives., Methods: We surveyed 112 young adults. Hypotheses were tested regarding the relationships between their preferences for sharing personal WGS information with relatives and factors including their gender, previous genetics-specific education, general educational attainment level and current study in a science, technology, engineering, maths or medicine (STEMM) field., Results: Most participants were positive about both their intention to share their WGS results with their parents and siblings, and their desire to know their relatives' results. Being female and having a university-level genetics education were consistently positively correlated with intention to share one's results with parents and with siblings as well as the desire to know relatives' results. Additionally, females who had undertaken a genetics course at university had significantly greater intentions and desires than females who had not. Lower general educational attainment was related to a lower intention to share with siblings. Participants who were in a STEMM field had a greater desire to know their relatives' results., Conclusions: Participants' gender and prior genetics education were consistently related to their intentions to share WGS results with relatives and their desire to know relatives' results. Educational attainment was found to be positively correlated with intention to share with siblings. Being in a STEMM field was related to participants' desire to know their relatives' results. These findings indicate that gender and genetics education are particularly important influencers on young adults' stated sharing preferences. More research is required to examine the dependent variables studied to further understand their influence on attitudes to sharing WGS results. These findings are particularly interesting for information provision and support before genomic sequencing and post-results to improve the outcomes for individuals and their relatives.
- Published
- 2019
- Full Text
- View/download PDF
21. Enhanced nanoparticle uptake into virus infected cells: Could nanoparticles be useful in antiviral therapy?
- Author
-
Abo-Zeid Y, Urbanowicz RA, Thomson BJ, Irving WL, Tarr AW, and Garnett MC
- Subjects
- Cell Line, Tumor, HIV Infections drug therapy, Hepacivirus genetics, Hepatitis C drug therapy, Hepatocytes drug effects, Humans, Liver cytology, Liver drug effects, Permeability, Polymers chemistry, Transfection, Antiviral Agents administration & dosage, Drug Delivery Systems methods, Hepacivirus drug effects, Hepatocytes metabolism, Nanoparticles chemistry
- Abstract
Virus infections cause diseases of different severity ranged from mild infection e.g. common cold into life threatening diseases e.g. Human Immunodeficiency virus (HIV), Hepatitis B. Virus infections represent 44% of newly emerging infections. Although there are many efficient antiviral agents, they still have drawbacks due to accumulation at off target organs and developing of virus resistance due to virus mutation. Therefore, developing a delivery system that can selectively target drug into affected organs and avoid off target accumulation would be a highly advantageous strategy to improve antiviral therapy. Nanoparticles (NP) can be effectively targeted to the liver, and therefore it could be used for improving therapy of hepatic virus infections including hepatitis B virus and hepatitis C virus (HCV). Many studies were performed to encapsulate antiviral agents into nano-delivery system to improve their pharmacokinetics parameters to have a better therapeutic efficacy with lower side effects. However, the effect of virus infection on the uptake of NP has not yet been studied in detail. The latter is a crucial area as modulation of endocytic uptake of nanoparticles could impact on reduce potential therapeutic usefulness of antiviral agents loaded into nano-delivery system. In this study, a fluorescently-labelled polymeric nanoparticle was prepared and used to track NP uptake into Huh7.5, human hepatoma cells transfected with replicating HCV genomes, compared with non-transfected cells as a model representing hepatocyte uptake. Confocal microscopy and flow cytometry of virus transfected Huh7.5 cells unexpectedly demonstrated two-fold increase in uptake of NP compared to non-transfected cells. Therefore, virus transfection enhanced NP uptake into Huh7.5 cells and NP could be considered as a promising delivery system for targeted treatment of hepatitis viruses., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
22. Diagnostic Distinction of Malignant Melanoma and Benign Nevi by a Gene Expression Signature and Correlation to Clinical Outcomes.
- Author
-
Ko JS, Matharoo-Ball B, Billings SD, Thomson BJ, Tang JY, Sarin KY, Cai E, Kim J, Rock C, Kimbrell HZ, Flake DD 2nd, Warf MB, Nelson J, Davis T, Miller C, Rushton K, Hartman AR, Wenstrup RJ, and Clarke LE
- Subjects
- Adult, Aged, Diagnosis, Differential, Female, Follow-Up Studies, Humans, Male, Melanocytes metabolism, Melanoma diagnosis, Melanoma pathology, Middle Aged, Nevus, Pigmented diagnosis, Nevus, Pigmented pathology, Sensitivity and Specificity, Skin pathology, Transcriptome, Gene Expression Profiling methods, Gene Expression Regulation, Neoplastic, Melanoma genetics, Nevus, Pigmented genetics
- Abstract
Background: Histopathologic examination alone can be inadequate for diagnosis of certain melanocytic neoplasms. Recently, a 23-gene expression signature was clinically validated as an ancillary diagnostic test to differentiate benign nevi from melanoma. The current study assessed the performance of this test in an independent cohort of melanocytic lesions against clinically proven outcomes. Methods: Archival tissue from primary cutaneous melanomas and melanocytic nevi was obtained from four independent institutions and tested with the gene signature. Cases were selected according to pre-defined clinical outcome measures. Malignant lesions were defined as stage I-III primary cutaneous melanomas that produced distant metastases (metastatic to sites other than proximal sentinel lymph node(s)) following diagnosis of the primary lesion. Melanomas that were metastatic at the time of diagnosis, all re-excisions, and lesions with <10% tumor volume were excluded. Benign lesions were defined as cutaneous melanocytic lesions with no adverse long-term events reported. Results: Of 239 submitted samples, 182 met inclusion criteria and produced a valid gene expression result. This included 99 primary cutaneous melanomas with proven distant metastases and 83 melanocytic nevi. Median time to melanoma metastasis was 18 months. Median follow-up time for nevi was 74.9 months. The gene expression score differentiated melanoma from nevi with a sensitivity of 93.8% and a specificity of 96.2%. Conclusions: The results of gene expression testing closely correlate with long-term clinical outcomes of patients with melanocytic neoplasms. Impact: Collectively, this provides strong evidence that the gene signature adds valuable adjunctive information to aid in the accurate diagnosis of melanoma. Cancer Epidemiol Biomarkers Prev; 26(7); 1107-13. ©2017 AACR ., (©2017 American Association for Cancer Research.)
- Published
- 2017
- Full Text
- View/download PDF
23. Equilibrative nucleoside transporter 1 expression in primary human hepatocytes is highly variable and determines uptake of ribavirin.
- Author
-
Baloch K, Chen L, Memon AA, Dexter L, Irving W, Ilyas M, and Thomson BJ
- Subjects
- Antimetabolites pharmacokinetics, Base Sequence, Cell Line, Tumor, Chromatography, High Pressure Liquid methods, Equilibrative Nucleoside Transporter 1 genetics, Equilibrative Nucleoside Transporter 1 metabolism, Humans, Equilibrative Nucleoside Transporter 1 biosynthesis, Hepatocytes metabolism, Ribavirin pharmacokinetics
- Abstract
Aims Ribavirin is a nucleoside analogue and remains a necessary component of both interferon-based and directly acting anti-viral regimens for the treatment of hepatitis C virus infection. The achievable concentration of ribavirin within hepatocytes is likely to be an important determinant of therapeutic outcome. In vitro expression levels of equilibrative nucleoside transporter 1 (ENT1) has been shown to be a predictor of treatment response in patients receiving nucleoside-based chemotherapeutic agents. We therefore investigated whether a similar relationship existed between ENT1 expression and ribavirin uptake in freshly isolated primary hepatocytes. Methods Primary hepatocytes were cultured on collagen-coated plates and exposed to ribavirin. Parallel samples were taken for high-performance liquid chromatography to assess ribavirin uptake and for quantitative polymerase chain reaction to evaluate ENT1 expression. Similar assays were performed on the human hepatoma cell line (Huh7). ENT1 gene sequence was analysed by cloning of polymerase chain reaction amplified complementary DNA followed by direct sequencing. Results There was a strong direct correlation between expression of ENT1 in primary hepatocytes and ribavirin uptake at 24 hr. Huh7 cells expressed ENT1 at similar levels to the majority of primary hepatocytes, but did not take up ribavirin. Sequencing revealed that ENT1 in Huh7 cells is wild type. Conclusions In this study, we clearly demonstrate that ribavirin uptake in primary human hepatocytes is variable and correlates with ENT1 expression. This variation in ENT1 expression may account for differences in response rate in patients receiving ribavirin-based anti-hepatitis C virus therapy.
- Published
- 2017
- Full Text
- View/download PDF
24. Clinical Care Pathways for Patients With Hepatitis C: Reducing Critical Barriers to Effective Treatment.
- Author
-
Howes N, Lattimore S, Irving WL, and Thomson BJ
- Abstract
Background. Engagement of individuals infected with hepatitis C virus (HCV) with care pathways remains a major barrier to realizing the benefits of new and more effective antiviral therapies. After an exploratory study, we have undertaken an evidence-based redesign of care pathways for HCV, including the following: (1) reflex testing of anti-HCV-positive samples for HCV RNA; (2) annotation of laboratory results to recommend referral of actively infected patients to specialist clinics; (3) educational programs for primary care physicians and nurses; and (4) the establishment of needs-driven community clinics in substance misuse services. Methods. In this study, we conducted a retrospective cohort study of progression through care pathways of individuals with a new diagnosis of HCV infection made between January 2010 and January 2012. We also analyzed patient flow through new care pathways and compared this with our baseline study of identical design. Results. A total of 28 980 samples were tested for anti-HCV antibody during the study period and yielded 273 unique patients with a new diagnosis of HCV infection. Of these, 38% were tested in general practice, 21% were tested in substance misuse services, 23% were tested in secondary care, and 18% were tested in local prisons. Overall, 80% of patients were referred to specialist clinics, 70% attended for assessment, and 38% commenced treatment, in comparison to 49%, 27%, and 10%, respectively, in the baseline study. Referral rates from all testing sources improved. Conclusions. This study provides timely evidence that progression through care pathways can be enhanced, and it demonstrates reduction of key barriers to eradication of HCV.
- Published
- 2016
- Full Text
- View/download PDF
25. Nottingham Health Science Biobank: a sustainable bioresource.
- Author
-
Matharoo-Ball B and Thomson BJ
- Subjects
- Biomedical Research economics, Cost-Benefit Analysis, Humans, Models, Economic, Specimen Handling economics, United Kingdom, Biological Specimen Banks economics, Biological Specimen Banks organization & administration
- Abstract
Nottingham Health Science Biobank (NHSB) was established in 2011 by a 3-year "pump priming" grant from the United Kingdom National Institute of Health Research. Before biobanking operations began, NHSB commissioned a financial report on the full costs of biobanking and worked with key stakeholders and external consultants to develop a business plan with the aim of achieving financial and operational sustainability. The plan included: scanning published information, telephone interviews with commercial companies, Freedom of Information Requests, dialogue with prospective customers, and a market analysis of global trends in the use of human tissue samples in research. Our financial report provided a comprehensive and structured costing template for biobanking and confirmed the absolute requirement to ensure cost-efficient processes, careful staff utilization, and maximization of sample turnover. Together with our external consultants, we developed a business model responsive to global interest in healthcare founded on i) identification of key therapeutic areas that mapped to the strengths of the NHSB; ii) a systematic approach to identifying companies operating in these therapy areas; iii) engagement with noncommercial stakeholders to agree strategically aligned sample collection with the aim of ensuring the value of our tissue resource. By adopting this systematic approach to business modelling, the NHSB has achieved sustainability after less than 3 years of operation.
- Published
- 2014
- Full Text
- View/download PDF
26. Serum autoantibody measurement for the detection of hepatocellular carcinoma.
- Author
-
Middleton CH, Irving W, Robertson JF, Murray A, Parsy-Kowalska CB, Macdonald IK, McElveen J, Allen J, Healey GF, Thomson BJ, Ryder SJ, Holdenrieder S, and Chapman CJ
- Subjects
- Adult, Aged, Biomarkers, Tumor blood, Carcinoma, Hepatocellular blood, Carcinoma, Hepatocellular immunology, Case-Control Studies, Enzyme-Linked Immunosorbent Assay, Female, Humans, Liver Diseases blood, Liver Diseases complications, Liver Diseases immunology, Liver Neoplasms blood, Liver Neoplasms immunology, Male, Middle Aged, Autoantibodies blood, Carcinoma, Hepatocellular diagnosis, Early Detection of Cancer methods, Liver Neoplasms diagnosis
- Abstract
Background: Individuals with liver disease, and especially those with Hepatitis B or C, are at an increased risk of developing hepatocellular carcinoma (HCC) which is the third most common cause of cancer-related death worldwide. Inadequate screening tests largely account for presentation of advanced tumours and high mortality rates. Early detection of HCC amongst high-risk groups is paramount in improving prognosis. This research aimed to further characterise the previously described humoral immune response raised to tumour-associated antigens (TAAs) in the serum of patients with HCC., Methods: Serum from 96 patients with confirmed HCC, 96 healthy controls matched for age and sex, 78 patients with confirmed liver cirrhosis and 91 patients with confirmed chronic liver disease were analysed for the presence of IgG autoantibodies raised to 41 recombinant TAAs/antigen fragments by ELISA., Results: Varying autoantibody specificities (97-100%) and sensitivities (0-10%) were observed to individual TAAs. A 21-antigen panel achieved a specificity of 92% and sensitivity of 45% for the detection of HCC. This same panel identified 21% of 169 high-risk controls as having elevated autoantibody levels. A reproducible panel of 10 antigens achieved a specificity of 91% and sensitivity of 41% in HCC. 15% of 152 high-risk controls gave positive results with this panel., Conclusions: This minimally invasive blood test has the potential to offer advantages over currently available tools for the identification of HCC amongst pre-disposed patients. Results are comparable to current gold standards in HCC (Ultrasonography) and to similar tests in other cancers (EarlyCDT-Lung).
- Published
- 2014
- Full Text
- View/download PDF
27. Mannan binding lectin-associated serine protease 1 is induced by hepatitis C virus infection and activates human hepatic stellate cells.
- Author
-
Saeed A, Baloch K, Brown RJ, Wallis R, Chen L, Dexter L, McClure CP, Shakesheff K, and Thomson BJ
- Subjects
- Actins genetics, Actins metabolism, Cell Differentiation, Cells, Cultured, Complement Pathway, Mannose-Binding Lectin immunology, Disease Progression, Hepatitis C complications, Humans, Liver Cirrhosis etiology, Mannose-Binding Lectin metabolism, Mannose-Binding Protein-Associated Serine Proteases genetics, Mannose-Binding Protein-Associated Serine Proteases immunology, Recombinant Proteins immunology, Tissue Inhibitor of Metalloproteinase-1 genetics, Tissue Inhibitor of Metalloproteinase-1 metabolism, Up-Regulation, Hepacivirus immunology, Hepatic Stellate Cells immunology, Hepatitis C immunology, Liver Cirrhosis immunology, Mannose-Binding Protein-Associated Serine Proteases metabolism
- Abstract
Mannan binding lectin (MBL)-associated serine protease type 1 (MASP-1) has a central role in the lectin pathway of complement activation and is required for the formation of C3 convertase. The activity of MASP-1 in the peripheral blood has been identified previously as a highly significant predictor of the severity of liver fibrosis in hepatitis C virus (HCV) infection, but not in liver disease of other aetiologies. In this study we tested the hypotheses that expression of MASP-1 may promote disease progression in HCV disease by direct activation of hepatic stellate cells (HSCs) and may additionally be up-regulated by HCV. In order to do so, we utilized a model for the maintenance of primary human HSC in the quiescent state by culture on basement membrane substrate prior to stimulation. In comparison to controls, recombinant MASP-1 stimulated quiescent human HSCs to differentiate to the activated state as assessed by both morphology and up-regulation of HSC activation markers α-smooth muscle actin and tissue inhibitor of metalloproteinase 1. Further, the expression of MASP-1 was up-regulated significantly by HCV infection in hepatocyte cell lines. These observations suggest a new role for MASP-1 and provide a possible mechanistic link between high levels of MASP-1 and the severity of disease in HCV infection. Taken together with previous clinical observations, our new findings suggest that the balance of MASP-1 activity may be proinflammatory and act to accelerate fibrosis progression in HCV liver disease., (© 2013 British Society for Immunology.)
- Published
- 2013
- Full Text
- View/download PDF
28. Osteopontin is a novel downstream target of SOX9 with diagnostic implications for progression of liver fibrosis in humans.
- Author
-
Pritchett J, Harvey E, Athwal V, Berry A, Rowe C, Oakley F, Moles A, Mann DA, Bobola N, Sharrocks AD, Thomson BJ, Zaitoun AM, Irving WL, Guha IN, Hanley NA, and Hanley KP
- Subjects
- Animals, Disease Progression, Humans, Male, Osteopontin biosynthesis, Rats, Rats, Sprague-Dawley, SOX9 Transcription Factor biosynthesis, Liver Cirrhosis diagnosis, Liver Cirrhosis etiology, Osteopontin physiology, SOX9 Transcription Factor physiology
- Abstract
Unlabelled: Osteopontin (OPN) is an important component of the extracellular matrix (ECM), which promotes liver fibrosis and has been described as a biomarker for its severity. Previously, we have demonstrated that Sex-determining region Y-box 9 (SOX9) is ectopically expressed during activation of hepatic stellate cells (HSC) when it is responsible for the production of type 1 collagen, which causes scar formation in liver fibrosis. Here, we demonstrate that SOX9 regulates OPN. During normal development and in the mature liver, SOX9 and OPN are coexpressed in the biliary duct. In rodent and human models of fibrosis, both proteins were increased and colocalized to fibrotic regions in vivo and in culture-activated HSCs. SOX9 bound a conserved upstream region of the OPN gene, and abrogation of Sox9 in HSCs significantly decreased OPN production. Hedgehog (Hh) signaling has previously been shown to regulate OPN expression directly by glioblastoma (GLI) 1. Our data indicate that in models of liver fibrosis, Hh signaling more likely acts through SOX9 to modulate OPN. In contrast to Gli2 and Gli3, Gli1 is sparse in HSCs and is not increased upon activation. Furthermore, reduction of GLI2, but not GLI3, decreased the expression of both SOX9 and OPN, whereas overexpressing SOX9 or constitutively active GLI2 could rescue the antagonistic effects of cyclopamine on OPN expression., Conclusion: These data reinforce SOX9, downstream of Hh signaling, as a core factor mediating the expression of ECM components involved in liver fibrosis. Understanding the role and regulation of SOX9 during liver fibrosis will provide insight into its potential modulation as an antifibrotic therapy or as a means of identifying potential ECM targets, similar to OPN, as biomarkers of fibrosis., (Copyright © 2012 American Association for the Study of Liver Diseases.)
- Published
- 2012
- Full Text
- View/download PDF
29. Cost-effectiveness of pegylated interferon and ribavirin for patients with chronic hepatitis C treated in routine clinical practice.
- Author
-
Grishchenko M, Grieve RD, Sweeting MJ, De Angelis D, Thomson BJ, Ryder SD, and Irving WL
- Subjects
- Adult, Antiviral Agents therapeutic use, Cost-Benefit Analysis, Decision Trees, Drug Therapy, Combination, Female, Health Care Costs, Humans, Interferon alpha-2, Interferon-alpha therapeutic use, Male, Markov Chains, Middle Aged, Polyethylene Glycols therapeutic use, Quality-Adjusted Life Years, Recombinant Proteins, Ribavirin therapeutic use, Antiviral Agents economics, Hepatitis C, Chronic drug therapy, Interferon-alpha economics, Polyethylene Glycols economics, Ribavirin economics
- Abstract
Objectives: This study assesses whether pegylated interferon and ribavirin is cost-effective compared with no antiviral treatment provided in routine clinical practice, for different patient subgroups., Methods: The cost-effectiveness analysis (CEA) uses a Markov decision model to estimate the lifetime cost per quality-adjusted life-year (QALY) of antiviral treatment compared with no treatment. The model is populated with data on sustained virological responses, costs, and transition probabilities all taken from a large representative sample of UK cases and centers (Trent HCV database)., Results: The CEA found that pegylated interferon and ribavirin was cost-effective for most patient subgroups. The CEA found that for patients with genotype non-1, the intervention led to cost reductions and gains of at least 0.5 QALYs. For genotype 1 cases with mild or moderate disease, and younger cirrhotic patients (aged 40 or less), costs per QALY remained below 20,000 pound sterling ($40,000 or 29,000 euro). For genotype 1 cases with cirrhosis aged 50, the mean cost per QALY rose to over 60,000 pound sterling ($120,000 or 87,000 euro)., Conclusions: The study concludes that, based on cost and effectiveness data collected from routine clinical practice, treatment with pegylated interferon and ribavirin is generally cost-effective. The study shows that there are variations according to patient subgroup and for older (aged 50 or over) genotype 1 patients with cirrhosis, antiviral treatment appears less cost-effective.
- Published
- 2009
- Full Text
- View/download PDF
30. Hepatitis C virus: the growing challenge.
- Author
-
Thomson BJ
- Subjects
- Hepacivirus physiology, Hepatitis C drug therapy, Humans, Virus Replication, Hepacivirus drug effects, Hepatitis C etiology, Substance Abuse, Intravenous complications
- Abstract
Background: Hepatitis C virus (HCV) is a major cause of liver disease worldwide. In industrialized countries, intravenous drug users (IDUs) are the main reservoir of infection. Relatively little information is available on HCV in the developing world., Sources of Data: Peer reviewed publications and presentations at major academic meetings., Areas of Agreement: HCV-related cirrhosis and death from hepatocellular carcinoma are likely to rise dramatically in the next three decades. Urgent intervention is required both to minimize the burden of disease in those already infected and to reduce the incidence of new infections, particularly in the IDU population., Areas of Controversy: Current models of care and commissioning in the UK and other countries do not adequately identify or treat HCV infection in IDUs. Most strategies focus on disease prevention and do not target new infections., Growing Points: New models of care are currently being developed and validated., Areas Timely for Developing Research: The development of new models of HCV replication will transform our understanding and capacity to treat HCV infection.
- Published
- 2009
- Full Text
- View/download PDF
31. Clinical trial: a primary-care-based model for the delivery of anti-viral treatment to injecting drug users infected with hepatitis C.
- Author
-
Jack K, Willott S, Manners J, Varnam MA, and Thomson BJ
- Subjects
- Adult, Algorithms, Cohort Studies, Drug Users, Female, Hepatitis C complications, Humans, Male, Middle Aged, Nurse Clinicians, Patient Compliance, Treatment Outcome, United Kingdom, Young Adult, Antiviral Agents therapeutic use, Hepatitis C drug therapy, Opioid-Related Disorders complications, Primary Health Care, Substance Abuse, Intravenous complications
- Abstract
Background: Injecting drug use is the main risk factor for hepatitis C virus (HCV) infection. Secondary-care-based strategies for the management of HCV do not effectively target this vulnerable population., Aims: To evaluate the feasibility, safety and efficacy of a primary-care-based model for the delivery of HCV services including anti-viral therapy to injecting drug users., Methods: A partnership between a clinical nurse specialist employed by, and working under the supervision of, a secondary-care-based hepatitis service and drug workers and general practitioners. Three hundred and fifty-three clients attending opiate substitution clinics in primary care were evaluated. Outcomes were: number of new diagnoses of HCV infection, number of clients assessed as suitable for anti-viral treatment, and number of patients treated., Results: 174 HCV antibody positive clients were identified. Of these, 124 were chronically infected with HCV of whom only six had been previously identified. Of 118 new chronically-infected individuals, 86 entered the care pathway, 43 were assessed as suitable for anti-viral treatment and 30 have so far been treated. Outcomes of anti-viral treatment are comparable with those obtained in secondary care settings., Conclusion: A primary-care-based model offers a new paradigm for the treatment of HCV in injecting drug users., (© 2008 The Authors. Journal compilation © 2008 Blackwell Publishing Ltd.)
- Published
- 2009
- Full Text
- View/download PDF
32. Response rates to combination therapy for chronic HCV infection in a clinical setting and derivation of probability tables for individual patient management.
- Author
-
Thomson BJ, Kwong G, Ratib S, Sweeting M, Ryder SD, De Angelis D, Grieve R, and Irving WL
- Subjects
- Adult, Age Factors, Drug Therapy, Combination, Female, Forecasting, Genotype, Hepacivirus classification, Hepacivirus genetics, Hepacivirus isolation & purification, Hepatitis C, Chronic pathology, Hepatitis C, Chronic virology, Humans, Interferon alpha-2, Liver pathology, Male, Middle Aged, Recombinant Proteins, Treatment Outcome, United Kingdom, Viremia, Antiviral Agents therapeutic use, Hepatitis C, Chronic drug therapy, Interferon-alpha therapeutic use, Polyethylene Glycols therapeutic use, Ribavirin therapeutic use
- Abstract
Evidence for efficacy of established treatment guidelines for chronic hepatitis C virus (HCV) disease is based on multinational randomized controlled trials (RCTs). Strategies for managing HCV, however, require an assessment of the effectiveness of intervention in routine clinical practice. We report the outcomes of combination therapy in a large cohort of HCV-infected individuals in the UK. A total of 347 (113 genotype 1, 234 genotype non-1) patients were treated with pegylated interferon and ribavirin according to current guidelines. Forty-two (37.2%) of those with genotype 1 infection and 164 (70.1%) with genotype non-1 infection achieved sustained viral response (SVR). Thirty-nine (11%) patients withdrew from treatment. In addition to viral genotype, factors predictive of a response to therapy were age at start of treatment and disease stage on pretreatment liver biopsy. Multivariate regression analysis demonstrated that the effects of age [odds ratio 0.5; 95% confidence interval (0.31-0.82) per 10-year increment (P = 0.006)] were confined to genotype 1 disease. In order to further inform the management of the individual patient, a multivariate logistic model was used to predict the probability of SVR for subgroups defined by disease stage, genotype and age at commencement of therapy. This model revealed striking differences in predicted response rates between subgroups and provided a strong rationale for early treatment, particularly for those with genotype 1 disease. Our study demonstrates that results comparable with those of RCTs can be achieved in clinical practice, and suggests that prediction of response rates based on probability modelling will provide a valuable adjunct to individual patient management.
- Published
- 2008
- Full Text
- View/download PDF
33. A closer look at water-related geologic activity on Mars.
- Author
-
McEwen AS, Hansen CJ, Delamere WA, Eliason EM, Herkenhoff KE, Keszthelyi L, Gulick VC, Kirk RL, Mellon MT, Grant JA, Thomas N, Weitz CM, Squyres SW, Bridges NT, Murchie SL, Seelos F, Seelos K, Okubo CH, Milazzo MP, Tornabene LL, Jaeger WL, Byrne S, Russell PS, Griffes JL, Martínez-Alonso S, Davatzes A, Chuang FC, Thomson BJ, Fishbaugh KE, Dundas CM, Kolb KJ, Banks ME, and Wray JJ
- Subjects
- Extraterrestrial Environment, Geological Phenomena, Geology, Mars, Water
- Abstract
Water has supposedly marked the surface of Mars and produced characteristic landforms. To understand the history of water on Mars, we take a close look at key locations with the High-Resolution Imaging Science Experiment on board the Mars Reconnaissance Orbiter, reaching fine spatial scales of 25 to 32 centimeters per pixel. Boulders ranging up to approximately 2 meters in diameter are ubiquitous in the middle to high latitudes, which include deposits previously interpreted as finegrained ocean sediments or dusty snow. Bright gully deposits identify six locations with very recent activity, but these lie on steep (20 degrees to 35 degrees) slopes where dry mass wasting could occur. Thus, we cannot confirm the reality of ancient oceans or water in active gullies but do see evidence of fluvial modification of geologically recent mid-latitude gullies and equatorial impact craters.
- Published
- 2007
- Full Text
- View/download PDF
34. Excess mortality rates in a cohort of patients infected with the hepatitis C virus: a prospective study.
- Author
-
Neal KR, Ramsay S, Thomson BJ, and Irving WL
- Subjects
- Adult, Age Distribution, Aged, Aged, 80 and over, Alcohol Drinking mortality, Cause of Death, England epidemiology, Female, Hepatitis C complications, Hepatitis C drug therapy, Humans, Liver Cirrhosis complications, Liver Cirrhosis mortality, Male, Middle Aged, Prospective Studies, Sex Distribution, Hepatitis C mortality
- Abstract
Objective: We analysed the Trent Hepatitis C cohort to determine standardised mortality ratios in patients infected with hepatitis C virus (HCV), and to identify risk factors and associations with all-cause and liver-related mortality., Design: Cohort study., Setting: Patients with HCV infection attending secondary care within the Trent region of England., Patients: 2285 patients with hepatitis C, followed for 1 year or more., Main Outcome Measures: The death rate in the cohort was compared to that seen in an age- and sex-matched English population. We performed Cox regression analyses to identify factors predictive of all-cause mortality and deaths from liver disease., Results: Standardised mortality ratios in the cohort were three times higher than those expected in the general population of England. The excess deaths were due to liver-related causes and those associated with a drug-using lifestyle. Significant independent predictors of all-cause mortality were age, sex, treatment (protective) and liver biopsy fibrosis. Age, treatment, liver biopsy fibrosis and mean alcohol consumption were predictors of liver-related mortality. HCV was mentioned on 23% of death certificates overall, and on 52% of those of patients dying from a liver-related cause., Conclusions: Our findings demonstrate that the death rate in patients infected with hepatitis C is three times higher than expected. Severity of disease is associated with a worse prognosis, whilst treatment improves outcome, particularly in those who respond. Use of death certificate data on HCV infection for planning purposes will result in considerable under-estimation of the HCV-related disease burden.
- Published
- 2007
- Full Text
- View/download PDF
35. Identification of conserved residues in the E2 envelope glycoprotein of the hepatitis C virus that are critical for CD81 binding.
- Author
-
Owsianka AM, Timms JM, Tarr AW, Brown RJ, Hickling TP, Szwejk A, Bienkowska-Szewczyk K, Thomson BJ, Patel AH, and Ball JK
- Subjects
- Amino Acid Sequence, Cell Line, Conserved Sequence, Hepacivirus genetics, Humans, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Tetraspanin 28, Viral Envelope Proteins genetics, Antigens, CD metabolism, Hepacivirus pathogenicity, Receptors, Virus metabolism, Viral Envelope Proteins chemistry, Viral Envelope Proteins metabolism
- Abstract
Hepatitis C virus (HCV) cell entry involves interaction between the viral envelope glycoprotein E2 and the cell surface receptor CD81. Knowledge of conserved E2 determinants important for successful binding will facilitate development of entry inhibitors designed to block this interaction. Previous studies have assigned the CD81 binding function to a number of discontinuous regions of E2. To better define specific residues involved in receptor binding, a panel of mutants of HCV envelope proteins was generated, where conserved residues within putative CD81 binding regions were sequentially mutated to alanine. Mutant proteins were tested for binding to a panel of monoclonal antibodies and CD81 and for their ability to form noncovalent heterodimers and confer infectivity in the retroviral pseudoparticle (HCVpp) assay. Detection by conformation-sensitive monoclonal antibodies indicated that the mutant proteins were correctly folded. Mutant proteins fell into three groups: those that bound CD81 and conferred HCVpp infectivity, those that abrogated both CD81 binding and HCVpp infectivity, and a final group containing mutants that were able to bind CD81 but were noninfectious in the HCVpp assay. Specific amino acids conserved across all genotypes that were critical for CD81 binding were W420, Y527, W529, G530, and D535. These data significantly increase our understanding of the CD81 receptor-E2 binding process.
- Published
- 2006
- Full Text
- View/download PDF
36. Caspase-independent killing of Burkitt lymphoma cell lines by rituximab.
- Author
-
Daniels I, Abulayha AM, Thomson BJ, and Haynes AP
- Subjects
- Antibodies, Monoclonal, Murine-Derived, Cell Line, Transformed, Cell Line, Tumor, Humans, Jurkat Cells, Rituximab, Antibodies, Monoclonal pharmacology, Antineoplastic Agents pharmacology, Burkitt Lymphoma drug therapy, Caspases physiology
- Abstract
Caspase-independent cell death may have a critical role to play in the therapeutic destruction of tumours. Recently it has been suggested that one of the mechanisms by which rituximab, a therapeutic anti-CD20 antibody, kills B cells is caspase-independent. In this study we show that rituximab can induce death in a variety of Burkitt lymphoma derived cell lines. Rituximab-treated cells show leakage of adenylate kinase, surface expression of phosphatidylserine, upregulation of the cellular stress protein HSP70, phosphorylation of the survival protein Akt, and depolarisation of the mitochondrial membrane but no loss of cytochrome c or apoptosis inducing factor. Caspase inhibitors do not block these events. In support of these data there is no cleavage of caspases 3, 8 and 9, poly(ADP-ribose) polymerase, BH3 interacting domain death agonist or genomic DNA. Morphologically, cells show nuclear enlargement and cytoplasmic vacuolisation. Triggering of receptor mediated death in CD95 responsive lines results in "classical" apoptosis indicating that the internal machinery necessary for apoptosis is intact in these lines. The results suggest that rituximab can kill human B cells via a caspase-independent form of programmed cell death that shares features of apoptosis and necrosis. This pathway may be relevant to the clinical efficacy of rituximab.
- Published
- 2006
- Full Text
- View/download PDF
37. Clinical pathways for patients with newly diagnosed hepatitis C - what actually happens.
- Author
-
Irving WL, Smith S, Cater R, Pugh S, Neal KR, Coupland CA, Ryder SD, Thomson BJ, Pringle M, Bicknell M, and Hippisley-Cox J
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Child, Cross-Sectional Studies, Female, Hepatitis C immunology, Hepatitis C virology, Humans, Male, Middle Aged, Retrospective Studies, United Kingdom, Hepacivirus growth & development, Hepatitis C diagnosis, Hepatitis C therapy, Hepatitis C Antibodies blood, Referral and Consultation
- Abstract
Management of hepatitis C virus (HCV)-infected individuals requires referral to specialist care. To determine whether patients newly diagnosed as anti-HCV positive are appropriately referred for further investigation and management, and if not, to determine why not. We studied patients tested for antibodies to HCV by Nottingham Public Health Laboratory in a 2-year period (2000-2002). The progress of newly diagnosed anti-HCV positive patients into specialist clinics for further management was documented. For patients not referred for specialist care, a questionnaire was sent to the clinician requesting the initial anti-HCV test, to identify reasons for nonreferral. Eleven thousand one hundred and seventy-seven patients were tested for anti-HCV. Two hundred and fifty-six (2.3%) were newly diagnosed as being anti-HCV positive. Two per cent of samples sent from primary care were anti-HCV positive, compared to 18.8, 18.9 and 1.3% sent from prison, drug and alcohol units, and secondary care, respectively. About 64.3% of positive patients diagnosed in primary care were referred to specialist care, compared to 18.4, 42.4 and 62.6% of patients diagnosed in the other three settings. One hundred and twenty-five (49%) newly diagnosed patients were referred appropriately for further management. 68 of these attended clinic, 45 underwent liver biopsy and 26 (10%) began treatment. One hundred and thirty-one patients (51%) were not referred. In 54 cases, there was no evidence that the anti-HCV positive result reached the patient. In 15, referral was considered but rejected, and 20 patients were referred to non-HCV-specialists (their general practitioners or to genito-urinary medicine). Hence less than 50% of newly diagnosed anti-HCV positive patients are referred to an appropriate clinic for further investigation and management. Reasons for this are multifarious and complex, reflecting both systems failure and patient choice. Unless these are understood and addressed, the Department of Health Hepatitis C Strategy (2002) and Action Plan for England (2004) will fail to achieve their intended objectives.
- Published
- 2006
- Full Text
- View/download PDF
38. Hepatitis C virus infection.
- Author
-
Thomson BJ and Finch RG
- Subjects
- HIV Infections complications, Health Personnel, Hepacivirus genetics, Hepatitis C epidemiology, Hepatitis C prevention & control, Humans, Prisons, Hepatitis C drug therapy
- Abstract
Hepatitis C virus (HCV) infection is a major public health problem. Up to 3% of the world's population is infected with HCV, and at least 200 000 adults in the UK carry the virus. Of those exposed to HCV, 80% become chronically infected, and at least 30% of carriers develop chronic liver disease, including cirrhosis and hepatocellular carcinoma. This review provides an overview of selected features of the molecular biology and pathogenesis of HCV infection, and thereafter discusses in detail the epidemiology of HCV, the hepatic and extra-hepatic diseases caused by the virus, and the current treatment options for both acute and chronic virus infection. The special cases of healthcare workers, prison inmates and individuals coinfected with human immunodeficiency virus and HCV are considered in detail.
- Published
- 2005
- Full Text
- View/download PDF
39. The effect of three-dimensional co-culture of hepatocytes and hepatic stellate cells on key hepatocyte functions in vitro.
- Author
-
Thomas RJ, Bhandari R, Barrett DA, Bennett AJ, Fry JR, Powe D, Thomson BJ, and Shakesheff KM
- Subjects
- Animals, Cell Differentiation, Cytochrome P-450 Enzyme System analysis, Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Hepatocytes enzymology, Humans, RNA, Messenger analysis, RNA, Messenger metabolism, Rats, Coculture Techniques methods, Hepatocytes cytology, Liver cytology, Spheroids, Cellular
- Abstract
In this study, we demonstrate the ability of a three-dimensional co-culture model to preserve some key aspects of differentiated hepatocyte function in vitro. Freshly isolated rat hepatocytes in co-culture with activated stellate cells rapidly aggregate to form well-defined viable spheroids. After 5 days in culture, the spheroids have a complex extracellular matrix support and hepatic ultrastructure including bile canaliculi, tight junctions, desmosomes and lipid storage. Co-culture spheroids have superior cytochrome P450 (CYP450) 3A and 2B function, and increased inducibility of 2B function, relative to a range of hepatocyte monoculture techniques (high-performance liquid chromatography of testosterone metabolites). Increased function in co-culture is supported by greater expression of CYP450 3A23, 1A2, and 2E1 mRNA relative to monoculture (reverse transcriptase quantitative polymerase chain reaction). Also, high hepatocyte growth factor mRNA expression in co-culture suggests a post-traumatic, or possibly regenerative, environment. A preliminary study of human hepatocytes co-cultured with rat stellate cells demonstrated prolonged function of CYP450 3A4, 2C19 and 2C9. This study shows that stellate cells facilitate spheroid formation, influence spheroid architecture, and are an effective method of preserving some aspects of hepatocyte function in the early stage of culture., (Copyright 2005 S. Karger AG, Basel.)
- Published
- 2005
- Full Text
- View/download PDF
40. Loss of cytomegalovirus-specific immunological memory in a patient with thymoma.
- Author
-
Huissoon AP, Davies G, Cox RA, Sloper CM, Thomson BJ, and Robins RA
- Subjects
- Aged, Antibodies, Viral blood, Antigens, Viral, Cytomegalovirus Retinitis etiology, Cytomegalovirus Retinitis immunology, Humans, Immunoglobulin G blood, In Vitro Techniques, Interferon-gamma biosynthesis, Lymphocyte Activation, Male, Opportunistic Infections etiology, Opportunistic Infections immunology, T-Lymphocytes immunology, Thymoma complications, Thymus Neoplasms complications, Cytomegalovirus immunology, Immunologic Memory, Thymoma immunology, Thymus Neoplasms immunology
- Abstract
Cytomegalovirus (CMV) retinitis is a re-activation infection associated with severely impaired T cell-mediated immunity. We describe a patient with long-standing Crohn's disease and thymoma who developed severe CMV retinitis. While thymoma can be associated with impaired humoral immunity and a quantitative CD4+ T helper cell deficiency, these were not evident in our patient. However, more detailed investigation of anti-CMV responses showed absence of specific T cell responses to CMV antigen. Normal CMV seropositive controls have detectable proliferation and interferon-gamma production by T cells in response to stimulation with CMV antigen, but this was absent in this patient both during the acute infection and in convalescence. Other measures of T cell function were normal. Since CMV retinitis is due to reactivation of latent CMV infection, it appears that selective loss of CMV-specific immunity had occurred, perhaps secondary to a thymoma. The causes of thymoma-associated immune impairment are not understood, but this case demonstrates that selective defects can occur in the absence of global T cell impairment. Opportunistic infections should therefore be suspected in patients with thymoma even in the absence of quantitative immune deficiencies.
- Published
- 2002
- Full Text
- View/download PDF
41. CD95 (Fas) expression is regulated by sequestration in the Golgi complex in B-cell lymphoma.
- Author
-
Haynes AP, Daniels I, Abhulayha AM, Carter GI, Metheringham R, Gregory CD, and Thomson BJ
- Subjects
- Flow Cytometry, Humans, Reverse Transcriptase Polymerase Chain Reaction, Tumor Cells, Cultured, Up-Regulation, Burkitt Lymphoma metabolism, Golgi Apparatus metabolism, fas Receptor metabolism
- Abstract
The CD95 (Fas) molecule transmits apoptotic signals important in B-cell development and the genesis of B-cell lymphoma. We have investigated the surface and intracellular expression of CD95 in Burkitt's lymphoma (BL) cells, an important non-Hodgkin's lymphoma of B-cell origin. Group I BL cells did not express CD95 at the cell surface, but contained high levels of this receptor in the cytoplasm. In contrast, group III BL cells expressed CD95 intracellularly and at the cell surface. In group I and group III BL cells, cytoplasmic CD95 was localized to the Golgi complex, as assessed by confocal immunofluorescence microscopy and subcellular fractionation followed by immunoblotting. Trafficking through the Golgi complex is regulated by elements within the target protein and cellular sorting mechanisms. CD95 contains candidate signals for interaction with trafficking machinery. Group I BL cells can be induced to upregulate surface expression of CD95 following CD40 ligation and certain group I BL cell lines drift invitro to a group III phenotype, with consequent surface expression of CD95. Taken together, these observations show that CD95 can either be retained in the Golgi complex or exported to the cell surface, and suggest that membrane trafficking has an important and previously unrecognized role in regulating CD95 expression in B lymphocytes.
- Published
- 2002
- Full Text
- View/download PDF
42. Evolutionary trends of the first hypervariable region of the hepatitis C virus E2 protein in individuals with differing liver disease severity.
- Author
-
Curran R, Jameson CL, Craggs JK, Grabowska AM, Thomson BJ, Robins A, Irving WL, and Ball JK
- Subjects
- Alanine Transaminase metabolism, Amino Acids, Base Sequence, Binding Sites, Genetic Variation, Hepacivirus classification, Hepatitis C metabolism, Hepatitis C virology, Hepatitis C Antigens classification, Hepatitis C, Chronic metabolism, Hepatitis C, Chronic physiopathology, Hepatitis C, Chronic virology, Humans, Liver metabolism, Liver physiopathology, Liver virology, Liver Diseases metabolism, Liver Diseases physiopathology, Liver Diseases virology, Molecular Sequence Data, Mutagenesis, Nucleotides, Phylogeny, Protein Sorting Signals, Sequence Analysis, DNA, Viral Envelope Proteins classification, Viral Load, Evolution, Molecular, Hepacivirus genetics, Hepatitis C physiopathology, Hepatitis C Antigens genetics, Viral Envelope Proteins genetics
- Abstract
Hepatitis C virus (HCV) exists as a complex swarm of genetically related viruses known as a quasispecies. Recent work has shown that quasispecies complexity and evolutionary rates are associated with the outcome of acute infection. Knowledge of how the virus population evolves at different stages of chronic infection is less clear. We have studied rates of evolution of the first hypervariable region (HVR1) of the E2 envelope protein in six individuals with disparate liver disease severity. These data show that virus populations present in individuals with mild non-progressive liver disease evolve in a typical Darwinian fashion, with a consistent accumulation of non-synonymous (amino acid-changing) substitutions. By contrast, the virus population remains relatively static in individuals with severe progressive liver disease. Possible mechanisms for this disparity are discussed.
- Published
- 2002
- Full Text
- View/download PDF
43. Direct ex vivo comparison of the breadth and specificity of the T cells in the liver and peripheral blood of patients with chronic HCV infection.
- Author
-
Grabowska AM, Lechner F, Klenerman P, Tighe PJ, Ryder S, Ball JK, Thomson BJ, Irving WL, and Robins RA
- Subjects
- CD8-Positive T-Lymphocytes immunology, Cells, Cultured, Flow Cytometry, HLA-A2 Antigen analysis, HLA-A2 Antigen immunology, Humans, RNA, Messenger analysis, RNA, Messenger genetics, Receptors, Antigen, T-Cell genetics, Receptors, Antigen, T-Cell immunology, Substrate Specificity, Hepacivirus immunology, Hepatitis C, Chronic blood, Hepatitis C, Chronic immunology, Liver immunology, T-Lymphocytes immunology
- Abstract
The role of intrahepatic lymphocytes in the control of hepatitis C virus (HCV) infection and the pathology associated with it is not understood; most studies of the immunology of this infection use peripheral blood lymphocyte populations. To address this further, we examined in detail the IHL from HCV-infected patients and controls, focusing on the antigen-specific CD8(+) T lymphocyte component. Individual T cells from needle liver biopsies and peripheral blood were isolated from patients with chronic HCV infection and examined directly ex vivo. We used RT-PCR spectratyping to compare the breadth of the T cell receptor usage in the liver in comparison with the peripheral blood, and applied MHC class I tetramer technology to investigate the numbers of HCV-specific CD8(+) cells in the two compartments. T cell receptor usage in the liver of HCV-infected patients was broad, comparable with that in the peripheral blood of the same patients. A much higher proportion of liver CD8(+) cells expressed receptors specific for HCV antigens compared with paired peripheral blood CD8(+) cells. A greater proportion of the liver tetramer-positive cells expressed the activation marker CD69, compared with those in the periphery or other CD8(+) cells in the liver. In the course of chronic HCV infection, HCV-specific CD8 cells, which have been recently activated, appear to accumulate specifically in the livers of infected patients but are present in much lower numbers in the peripheral circulation. Further studies are needed to determine the function of these cells and their role in protection and immunopathology.
- Published
- 2001
- Full Text
- View/download PDF
44. Development of a strand-specific RT-PCR based assay to detect the replicative form of hepatitis C virus RNA.
- Author
-
Craggs JK, Ball JK, Thomson BJ, Irving WL, and Grabowska AM
- Subjects
- DNA Repair Enzymes, Exodeoxyribonucleases metabolism, Hepacivirus isolation & purification, Hepatitis C virology, Humans, Liver pathology, Liver virology, Plasmids, Sensitivity and Specificity, Hepacivirus genetics, RNA, Viral analysis, Reverse Transcriptase Polymerase Chain Reaction, Virus Replication
- Abstract
The recent development of tagged RT-PCR and rTth RT-PCR has greatly improved strand-specific detection of hepatitis C virus (HCV) RNA but these assays are still prone to some false detection of the incorrect strand of RNA. In this study we aimed to address additional factors which contribute towards false detection of HCV RNA. Firstly the benefits of both tagged primers and the thermostable reverse transcriptase rTth during cDNA synthesis were combined and it was found that strand specificity was greatly improved without compromising sensitivity. The reliability of the assay was then optimised by addressing the following issues: control synthetic transcripts should be free of contaminating plasmid DNA, residual RT activity should be minimised in the presence of PCR primers and cDNA should be free of unincorporated tagged RT primer prior to PCR amplification. The alterations made to the assay eliminated completely false detection of the incorrect strand of RNA in the control assay whilst the correct strand was consistently detected at a cDNA dilution of 10(-3)-10(-4). Negative strand was not detected in RNA isolated from serum but was detected, at a ten-fold lower level than positive strand, in RNA isolated from liver tissue.
- Published
- 2001
- Full Text
- View/download PDF
45. Viruses and apoptosis.
- Author
-
Thomson BJ
- Subjects
- Animals, Caspases physiology, Cell Transformation, Viral physiology, Cytopathogenic Effect, Viral physiology, Genes, p53 physiology, Humans, Mitochondria physiology, Proto-Oncogene Proteins c-bcl-2 physiology, Receptors, Tumor Necrosis Factor physiology, Viral Proteins physiology, Apoptosis physiology, Host-Parasite Interactions physiology, Oncogenic Viruses physiology
- Abstract
Apoptosis, or programmed cell death, is essential in development and homeostasis in multi-cellular organisms. It is also an important component of the cellular response to injury. Many cells undergo apoptosis in response to viral infection, with a consequent reduction in the release of progeny virus. Viruses have therefore evolved multiple distinct mechanisms for modulating host cell apoptosis. Viruses may interfere with either the highly conserved 'effector' mechanisms of programmed cell death or regulatory mechanisms specific to mammalian cells. In addition to conferring a selective advantage to the virus, the capacity to prevent apoptosis has an essential role in the transformation of the host cell by oncogenic viruses. This article provides a focussed review of apoptosis and illustrates how the study of viruses has informed our understanding of this process. Selected mechanisms by which viral gene products interfere with cell death are discussed in detail and used to illustrate the general principles of the interactions between viruses and apoptosis.
- Published
- 2001
- Full Text
- View/download PDF
46. Viruses and cancer.
- Author
-
Irving WL and Thomson BJ
- Subjects
- Apoptosis, Cell Division, Humans, Immunity, Cellular, Neoplasms pathology, Virus Diseases pathology, Neoplasms virology, Virus Diseases complications
- Published
- 2001
- Full Text
- View/download PDF
47. Possible ancient oceans on Mars: evidence from Mars Orbiter Laser Altimeter data.
- Author
-
Head JW 3rd, Hiesinger H, Ivanov MA, Kreslavsky MA, Pratt S, and Thomson BJ
- Subjects
- Oceans and Seas, Evolution, Planetary, Extraterrestrial Environment, Mars, Water
- Abstract
High-resolution altimetric data define the detailed topography of the northern lowlands of Mars, and a range of data is consistent with the hypothesis that a lowland-encircling geologic contact represents the ancient shoreline of a large standing body of water present in middle Mars history. The contact altitude is close to an equipotential line, the topography is smoother at all scales below the contact than above it, the volume enclosed by this contact is within the range of estimates of available water on Mars, and a series of extensive terraces parallel the contact in many places.
- Published
- 1999
- Full Text
- View/download PDF
48. TT virus infection in patients with hepatitis C: frequency, persistence, and sequence heterogeneity.
- Author
-
Irving WL, Ball JK, Berridge S, Curran R, Grabowska AM, Jameson CL, Neal KR, Ryder SD, and Thomson BJ
- Subjects
- Adolescent, Adult, Aged, Amino Acid Sequence, DNA Virus Infections epidemiology, DNA Viruses classification, DNA, Viral blood, Evolution, Molecular, Female, Humans, Liver Cirrhosis etiology, Liver Neoplasms etiology, Male, Middle Aged, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction methods, Prevalence, Sequence Homology, Amino Acid, DNA Virus Infections complications, DNA Viruses genetics, Genetic Heterogeneity, Hepatitis C, Chronic complications
- Abstract
TT virus (TTV) was recently identified in the serum of a patient with hepatitis. The role of TTV in liver disease has not been established. Three polymerase chain reaction (PCR) protocols were used to detect TTV DNA in sera of persons infected with hepatitis C virus (HCV) and in blood donors. Sera from 11.5% of HCV-infected patients and 7.7% of blood donors were positive by protocols 1 or 2. In contrast, 48.7% and 57.7% of sera, respectively, were positive when tested by protocol 3. There was no difference in the severity of hepatitis in persons coinfected with TTV and HCV when compared with those infected with HCV alone, regardless of which TTV PCR protocol was used. TTV DNA persisted in serum samples taken up to 6 years apart in individual patients. Sequence analysis indicated that most viral sequences were distinct between patients, and there was evidence of genetic heterogeneity and viral evolution within individuals.
- Published
- 1999
- Full Text
- View/download PDF
49. TT virus sequence heterogeneity in vivo: evidence for co-infection with multiple genetic types.
- Author
-
Ball JK, Curran R, Berridge S, Grabowska AM, Jameson CL, Thomson BJ, Irving WL, and Sharp PM
- Subjects
- Amino Acid Sequence, DNA Viruses pathogenicity, DNA, Viral genetics, Humans, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Virulence genetics, DNA Viruses genetics, Genetic Variation, Genome, Viral, Hepatitis, Viral, Human virology
- Abstract
TT virus (TTV) is a newly described DNA virus of humans that exhibits an unusually high degree of genetic heterogeneity. We have performed extensive analysis of the TTV populations present in samples, taken over a period of 2 to 6 years, from three individuals with persistent TTV infection. TTV DNA titres estimated for sequential samples were found to be quite stable over the entire study period in two patients, but fluctuated considerably in the third. DNA sequence analysis revealed different genetic diversity among TTV populations from samples from the three patients. In one case, absolute sequence homogeneity was observed among samples over a 3 year period. In a second, a limited amount of heterogeneity was found, including one sequence exhibiting G-->A hypermutation. TTV DNA sequences from the third patient exhibited quite remarkable genetic heterogeneity: evidence was found of seven distinct infecting viruses, representing four of the six TTV genotypes that have been described. In addition, minor variants of three of these seven sequences were observed. The heterogeneity of the viral population in this individual declined steadily over a 6 year period. This patient infected with a genetically diverse TTV population had the highest viral DNA titre.
- Published
- 1999
- Full Text
- View/download PDF
50. Dendritic cells cultured from mononuclear cells and CD34 cells in myeloma do not harbour human herpesvirus 8.
- Author
-
Cull GM, Timms JM, Haynes AP, Russell NH, Irving WL, Ball JK, and Thomson BJ
- Subjects
- Flow Cytometry, Humans, Polymerase Chain Reaction, Sensitivity and Specificity, Antigens, CD34, Dendritic Cells virology, Herpesviridae Infections immunology, Herpesvirus 8, Human isolation & purification, Multiple Myeloma virology
- Abstract
Dendritic cells (DC) are antigen-presenting cells with the potential to be a powerful adjuvant in the immunotherapy of haematological malignancy, including myeloma. Recently, human herpesvirus 8 (HHV-8) infection of dendritic cells in the long-term bone marrow stromal cultures of patients with myeloma has been reported. This finding is of great potential importance regarding oncogenesis in myeloma in addition to having significant implications for the use of DC in the immunotherapy of this disease. Therefore DC generated from mobilized blood mononuclear cells (MO-DC) and purified CD34+ cells (CD34-DC) of myeloma patients were examined for the presence of HHV-8 using a sensitive PCR technique. HHV-8 was not demonstrated in MO-DC or CD34-DC and we conclude that these cells remain a suitable vehicle for investigation in the immunotherapy of myeloma.
- Published
- 1998
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.