1,191 results on '"Thompson, John R"'
Search Results
2. Mixed-type Distance Shrinkage and Selection for Clustering via Kernel Metric Learning
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Ghashti, Jesse S. and Thompson, John R. J.
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Computer Science - Machine Learning ,Statistics - Computation ,Statistics - Methodology ,Statistics - Other Statistics ,62G07, 65D10 ,I.5.3 ,G.3 ,I.6.6 - Abstract
Distance-based clustering and classification are widely used in various fields to group mixed numeric and categorical data. In many algorithms, a predefined distance measurement is used to cluster data points based on their dissimilarity. While there exist numerous distance-based measures for data with pure numerical attributes and several ordered and unordered categorical metrics, an efficient and accurate distance for mixed-type data that utilizes the continuous and discrete properties simulatenously is an open problem. Many metrics convert numerical attributes to categorical ones or vice versa. They handle the data points as a single attribute type or calculate a distance between each attribute separately and add them up. We propose a metric called KDSUM that uses mixed kernels to measure dissimilarity, with cross-validated optimal bandwidth selection. We demonstrate that KDSUM is a shrinkage method from existing mixed-type metrics to a uniform dissimilarity metric, and improves clustering accuracy when utilized in existing distance-based clustering algorithms on simulated and real-world datasets containing continuous-only, categorical-only, and mixed-type data., Comment: 38 pages, 3 tables, 8 figures
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- 2023
3. Genetic influence on vascular smooth muscle cell apoptosis
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McVey, David G., Andreadi, Catherine, Gong, Peng, Stanczyk, Paulina J., Solomon, Charles U., Turner, Lenka, Yan, Liu, Chen, Runji, Cao, Junjun, Nelson, Christopher P., Thompson, John R., Yu, Haojie, Webb, Tom R., Samani, Nilesh J., and Ye, Shu
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- 2024
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4. Student Understanding of the Sign of Negative Definite Integrals in Mathematics and Physics
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Bajracharya, Rabindra R., Sealey, Vicki L., and Thompson, John R.
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In a study of student understanding of negative definite integrals at two institutions, we administered a written survey and follow-up clinical interviews at one institution and found that "backward integrals", where the integral was taken from right to left on the x-axis, were the most difficult for students to interpret. We then conducted additional interviews focused on backward integrals at a second institution. Our analysis uses the concept image framework and a recent categorical framework for mathematical sense making. We found that students were most successful using the Fundamental Theorem of Calculus to determine the sign of an integral when a symbolic expression was provided. When considering a definite integral in a graphical context, students often had difficulty if they viewed the integral as a spatial area, stating that area must always be positive. Some students were able to conceptualize [delta]x or dx as a difference or change and thus a signed quantity; when these students were able to view the area as a sum of smaller pieces, they were more successful in justifying a negative backward integral. Students who used amounts or similar images often had difficulty making sense of the negative sign. Even more progress was made when students either invoked or were asked explicitly about a specific physical context to be represented by the backward integral, other than spatial area. The context provided a meaning to the difference represented by [delta]x or dx and thus to the sign of that difference and the definite integral.
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- 2023
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5. Measuring Financial Advice: aligning client elicited and revealed risk
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Thompson, John R. J., Feng, Longlong, Reesor, R. Mark, Grace, Chuck, and Metzler, Adam
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Economics - Econometrics ,Statistics - Applications ,91G70 (Primary) 91C05, 91-10 (Secondary) - Abstract
Financial advisors use questionnaires and discussions with clients to determine a suitable portfolio of assets that will allow clients to reach their investment objectives. Financial institutions assign risk ratings to each security they offer, and those ratings are used to guide clients and advisors to choose an investment portfolio risk that suits their stated risk tolerance. This paper compares client Know Your Client (KYC) profile risk allocations to their investment portfolio risk selections using a value-at-risk discrepancy methodology. Value-at-risk is used to measure elicited and revealed risk to show whether clients are over-risked or under-risked, changes in KYC risk lead to changes in portfolio configuration, and cash flow affects a client's portfolio risk. We demonstrate the effectiveness of value-at-risk at measuring clients' elicited and revealed risk on a dataset provided by a private Canadian financial dealership of over $50,000$ accounts for over $27,000$ clients and $300$ advisors. By measuring both elicited and revealed risk using the same measure, we can determine how well a client's portfolio aligns with their stated goals. We believe that using value-at-risk to measure client risk provides valuable insight to advisors to ensure that their practice is KYC compliant, to better tailor their client portfolios to stated goals, communicate advice to clients to either align their portfolios to stated goals or refresh their goals, and to monitor changes to the clients' risk positions across their practice., Comment: 36 pages, 17 figures, 5 tables
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- 2021
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6. Student Understanding of the Sign of Negative Definite Integrals in Mathematics and Physics
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Bajracharya, Rabindra R., Sealey, Vicki L., and Thompson, John R.
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- 2023
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7. Anisotropic local constant smoothing for change-point regression function estimation
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Thompson, John R. J. and Braun, W. John
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Statistics - Methodology ,Mathematics - Statistics Theory ,Statistics - Applications - Abstract
Understanding forest fire spread in any region of Canada is critical to promoting forest health, and protecting human life and infrastructure. Quantifying fire spread from noisy images, where regions of a fire are separated by change-point boundaries, is critical to faithfully estimating fire spread rates. In this research, we develop a statistically consistent smooth estimator that allows us to denoise fire spread imagery from micro-fire experiments. We develop an anisotropic smoothing method for change-point data that uses estimates of the underlying data generating process to inform smoothing. We show that the anisotropic local constant regression estimator is consistent with convergence rate $O\left(n^{-1/{(q+2)}}\right)$. We demonstrate its effectiveness on simulated one- and two-dimensional change-point data and fire spread imagery from micro-fire experiments., Comment: 30 pages, 12 figures. Parts of this Original Manuscript are in an article published by Taylor & Francis in the Journal of Applied Statistics on April 20th 2024, available at https://doi.org/10.1080/02664763.2024.2352759
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- 2020
8. Know Your Clients' behaviours: a cluster analysis of financial transactions
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Thompson, John R. J., Feng, Longlong, Reesor, R. Mark, and Grace, Chuck
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Economics - Econometrics ,Statistics - Applications ,Statistics - Machine Learning - Abstract
In Canada, financial advisors and dealers are required by provincial securities commissions and self-regulatory organizations--charged with direct regulation over investment dealers and mutual fund dealers--to respectively collect and maintain Know Your Client (KYC) information, such as their age or risk tolerance, for investor accounts. With this information, investors, under their advisor's guidance, make decisions on their investments which are presumed to be beneficial to their investment goals. Our unique dataset is provided by a financial investment dealer with over 50,000 accounts for over 23,000 clients. We use a modified behavioural finance recency, frequency, monetary model for engineering features that quantify investor behaviours, and machine learning clustering algorithms to find groups of investors that behave similarly. We show that the KYC information collected does not explain client behaviours, whereas trade and transaction frequency and volume are most informative. We believe the results shown herein encourage financial regulators and advisors to use more advanced metrics to better understand and predict investor behaviours., Comment: 38 pages, 12 figures
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- 2020
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9. Use of copula to model within-study association in bivariate meta-analysis of binomial data at the aggregate level a Bayesian approach and application to surrogate endpoint evaluation
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Papanikos, Tasos, Thompson, John R, Abrams, Keith R, and Bujkiewicz, Sylwia
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Statistics - Applications ,Statistics - Methodology - Abstract
Bivariate meta-analysis provides a useful framework for combining information across related studies and has been utilised to combine evidence from clinical studies to evaluate treatment efficacy on two outcomes. It has also been used to investigate surrogacy patterns between treatment effects on the surrogate endpoint and the final outcome. Surrogate endpoints play an important role in drug development when they can be used to measure treatment effect early compared to the final outcome and to predict clinical benefit or harm. The standard bivariate meta-analytic approach models the observed treatment effects on the surrogate and the final outcome outcomes jointly, at both the within-study and between-studies levels, using a bivariate normal distribution. For binomial data, a normal approximation on log odds ratio scale can be used. However, this method may lead to biased results when the proportions of events are close to one or zero, affecting the validation of surrogate endpoints. In this paper, we explore modelling the two outcomes on the original binomial scale. Firstly, we present a method that uses independent binomial likelihoods to model the within-study variability avoiding to approximate the observed treatment effects. However, the method ignores the within-study association. To overcome this issue, we propose a method using a bivariate copula with binomial marginals, which allows the model to account for the within-study association. We applied the methods to an illustrative example in chronic myeloid leukemia to investigate the surrogate relationship between complete cytogenetic response (CCyR) and event-free-survival (EFS)., Comment: 22 pages, 5 figures
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- 2020
10. Bivariate network meta-analysis for surrogate endpoint evaluation
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Bujkiewicz, Sylwia, Jackson, Dan, Thompson, John R, Turner, Rebecca, Abrams, Keith R, and White, Ian R
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Statistics - Methodology - Abstract
Surrogate endpoints are very important in regulatory decision-making in healthcare, in particular if they can be measured early compared to the long-term final clinical outcome and act as good predictors of clinical benefit. Bivariate meta-analysis methods can be used to evaluate surrogate endpoints and to predict the treatment effect on the final outcome from the treatment effect measured on a surrogate endpoint. However, candidate surrogate endpoints are often imperfect, and the level of association between the treatment effects on the surrogate and final outcomes may vary between treatments. This imposes a limitation on the pairwise methods which do not differentiate between the treatments. We develop bivariate network meta-analysis (bvNMA) methods which combine data on treatment effects on the surrogate and final outcomes, from trials investigating heterogeneous treatment contrasts. The bvNMA methods estimate the effects on both outcomes for all treatment contrasts individually in a single analysis. At the same time, they allow us to model the surrogacy patterns across multiple trials (different populations) within a treatment contrast and across treatment contrasts, thus enabling predictions of the treatment effect on the final outcome for a new study in a new population or investigating a new treatment. Modelling assumptions about the between-studies heterogeneity and the network consistency, and their impact on predictions, are investigated using simulated data and an illustrative example in advanced colorectal cancer. When the strength of the surrogate relationships varies across treatment contrasts, bvNMA has the advantage of identifying treatments for which surrogacy holds, thus leading to better predictions.
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- 2018
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11. Dynamic Conceptual Blending Analysis to Model Student Reasoning Processes While Integrating Mathematics and Physics: A Case Study in the Context of the Heat Equation
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Van den Eynde, Sofie, Schermerhorn, Benjamin P., Deprez, Johan, Goedhart, Martin, Thompson, John R., and De Cock, Mieke
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In recent years, there has been an increased interest in conceptual blending in physics and mathematics education research as a theoretical framework to study student reasoning. In this paper, we adapt the conceptual blending framework to construct a blending diagram that not only captures the product but also the process of student reasoning when they interpret a mathematical description of a physical system. We describe how to construct a dynamic blending diagram (DBD) and illustrate this using two cases from an interview study. In the interview, we asked pairs of undergraduate physics and mathematics students about the physical meaning of boundary conditions for the heat equation. The selected examples show different aspects of the DBD as an analysis method. We show that by using a DBD, we can judge the degree to which students integrate their understandings of mathematics and physics. The DBD also enables the reader to follow the line of reasoning of the students. Moreover, a DBD can be used to diagnose difficulties in student reasoning.
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- 2020
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12. Polygenic basis and biomedical consequences of telomere length variation
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Codd, Veryan, Wang, Qingning, Allara, Elias, Musicha, Crispin, Kaptoge, Stephen, Stoma, Svetlana, Jiang, Tao, Hamby, Stephen E., Braund, Peter S., Bountziouka, Vasiliki, Budgeon, Charley A., Denniff, Matthew, Swinfield, Chloe, Papakonstantinou, Manolo, Sheth, Shilpi, Nanus, Dominika E., Warner, Sophie C., Wang, Minxian, Khera, Amit V., Eales, James, Ouwehand, Willem H., Thompson, John R., Di Angelantonio, Emanuele, Wood, Angela M., Butterworth, Adam S., Danesh, John N., Nelson, Christopher P., and Samani, Nilesh J.
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- 2021
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13. Student understanding of the Boltzmann factor
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Smith, Trevor I., Mountcastle, Donald B., and Thompson, John R.
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Physics - Physics Education - Abstract
We present results of our investigation into student understanding of the physical significance and utility of the Boltzmann factor in several simple models. We identify various justifications, both correct and incorrect, that students use when answering written questions that require application of the Boltzmann factor. Results from written data as well as teaching interviews suggest that many students can neither recognize situations in which the Boltzmann factor is applicable, nor articulate the physical significance of the Boltzmann factor as an expression for multiplicity, a fundamental quantity of statistical mechanics. The specific student difficulties seen in the written data led us to develop a guided-inquiry tutorial activity, centered around the derivation of the Boltzmann factor, for use in undergraduate statistical mechanics courses. We report on the development process of our tutorial, including data from teaching interviews and classroom observations on student discussions about the Boltzmann factor and its derivation during the tutorial development process. This additional information informed modifications that improved students' abilities to complete the tutorial during the allowed class time without sacrificing the effectiveness as we have measured it. These data also show an increase in students' appreciation of the origin and significance of the Boltzmann factor during the student discussions. Our findings provide evidence that working in groups to better understand the physical origins of the canonical probability distribution helps students gain a better understanding of when the Boltzmann factor is applicable and how to use it appropriately in answering relevant questions.
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- 2015
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14. Identifying Student Difficulties with Entropy, Heat Engines, and the Carnot Cycle
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Smith, Trevor I., Christensen, Warren M., Mountcastle, Donald B., and Thompson, John R.
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Physics - Physics Education - Abstract
We report on several specific student difficulties regarding the Second Law of Thermodynamics in the context of heat engines within upper-division undergraduates thermal physics courses. Data come from ungraded written surveys, graded homework assignments, and videotaped classroom observations of tutorial activities. Written data show that students in these courses do not clearly articulate the connection between the Carnot cycle and the Second Law after lecture instruction. This result is consistent both within and across student populations. Observation data provide evidence for myriad difficulties related to entropy and heat engines, including students' struggles in reasoning about situations that are physically impossible and failures to differentiate between differential and net changes of state properties of a system. Results herein may be seen as the application of previously documented difficulties in the context of heat engines, but others are novel and emphasize the subtle and complex nature of cyclic processes and heat engines, which are central to the teaching and learning of thermodynamics and its applications. Moreover, the sophistication of these difficulties is indicative of the more advanced thinking required of students at the upper division, whose developing knowledge and understanding give rise to questions and struggles that are inaccessible to novices.
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- 2015
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15. Physics Students' Construction of Differential Length Vectors in an Unconventional Spherical Coordinate System
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Schermerhorn, Benjamin P. and Thompson, John R.
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Vector calculus and multivariable coordinate systems play a large role in the understanding and calculation of much of the physics in upper-division electricity and magnetism. Differential vector elements represent one key mathematical piece of students' use of vector calculus. In an effort to examine students' understanding of non-Cartesian differential length elements, students in junior-level electricity and magnetism were interviewed in pairs and asked to construct a differential length vector for an unconventional spherical coordinate system. One aspect of this study identified symbolic forms invoked by students when building these vector expressions, some previously identified and some novel, given the vector calculus context. Analysis also highlighted several common ideas in students' concept images of a non-Cartesian differential length vector as they determined their expressions. As no interview initially resulted in the construction of an appropriate differential, analysis addresses the role of the evoked concept images and symbolic forms on students' performance.
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- 2019
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16. Reconsidering the Encoding of Data in Physics Education Research
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Springuel, R. Padraic, Wittmann, Michael C., and Thompson, John R.
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How data are collected and how they are analyzed is typically described in the literature, but how the data are encoded is often not described in detail. In this paper, we discuss how data typically gathered in PER are encoded and how the choice of encoding plays a role in data analysis. We describe the kinds of data that are found when using short answer, multiple choice, Likert-scale, ranking task, and free response questions in terms of nominal, ordinal, interval, and ratio data. We discuss the mathematical operations that are available for each kind of data and how this affects ways that similarity and difference between student responses can be determined, a topic we discuss in terms of measures of distances and correlation. Finally, we use several papers from the literature to discuss ways in which data have been encoded and analyzed, with examples of normalized gain, factor analysis, model analysis, cluster analysis, and the investigation of epistemological agreement. We highlight both strengths and weaknesses of the data encoding approaches used in these studies. Our goal is not a comprehensive review, but one that is illustrative and can help researchers understand their own and each other's work more deeply.
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- 2019
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17. Iterative smoothing for change-point regression function estimation.
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Thompson, John R. J.
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Understanding wildfire spread in Canada is critical to promoting forest health and protecting human life and infrastructure. Quantifying fire spread from noisy images, where change-point boundaries separate regions of fire, is critical to accurately estimating fire spread rates. The challenge lies in denoising the fire images and accurately identifying highly non-linear fire lines without smoothing over boundaries. In this paper, we develop an iterative smoothing algorithm for change-point data that utilizes oversmoothed estimates of the underlying data generating process to inform re-smoothing. We demonstrate its effectiveness on simulated one- and two-dimensional change-point data, and robustness to response outliers. Then, we apply the methodology to fire spread images from laboratory micro-fire experiments and show that the regions fuel, burning and burnt-out are smoothed while boundaries are preserved. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Making context explicit in equation construction and interpretation: Symbolic blending
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Schermerhorn, Benjamin P., primary and Thompson, John R., additional
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- 2023
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19. Association of the PHACTR1/EDN1 Genetic Locus With Spontaneous Coronary Artery Dissection
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Motreff, Pascal, Belle, Loïc, Dupouy, Patrick, Barnay, Pierre, Meneveau, Nicolas, Gilard, Martine, Rioufol, Gilles, Range, Grégoire, Brunel, Philippe, Delarche, Nicolas, Filippi, Emmanuelle, Le Bivic, Louis, Harbaoui, Brahim, Benamer, Hakim, Cayla, Guillaume, Varenne, Olivier, Manzo-Silberman, Stephane Peggy, Silvain, Johanne, Spaulding, Christian, Caussin, Christophe, Gerbaud, Edouard, Valy, Yann, Koning, René, Lhermusier, Thibault, Champin, Stanislas, Salengro, Emmanuel, Fluttaz, Arnaud, Zabalawi, Amer, Cottin, Yves, Teiger, Emmanuel, Saint-Etienne, Christophe, Ducrocq, Grégory, Marliere, Stéphanie, Boiffard, Emmanuel, Aubry, Pierre, Georges, Jean Louis, Bresson, Didier, De Poli, Fabien, Karrillon, Gaëtan, Roule, Vincent, Bali, Laurent, Valla, Mathieu, Gerbay, Antoine, Houpe, David, Dubreuil, Olivier, Monnier, Arsène, Mayaud, Norbert, Manchuelle, Aurélie, Commeau, Philippe, Bedossa, Marc, Nikpay, Majid, Goel, Anuj, Won, Hong-Hee, Hall, Leanne M., Willenborg, Christina, Kanoni, Stavroula, Saleheen, Danish, Kyriakou, Theodosios, Nelson, Christopher P., Hopewell, Jemma C., Webb, Thomas R., Zeng, Lingyao, Dehghan, Abbas, Alver, Maris, Armasu, Sebastian M., Auro, Kirsi, Bjonnes, Andrew, Chasman, Daniel I., Chen, Shufeng, Ford, Ian, Franceschini, Nora, Gieger, Christian, Grace, Christopher, Gustafsson, Stefan, Huang, Jie, Hwang, Shih-Jen, Kim, Yun Kyoung, Kleber, Marcus E., Lau, King Wai, Lu, Xiangfeng, Lu, Yingchang, Lyytikäinen, Leo P., Mihailov, Evelin, Morrison, Alanna, Pervjakova, Natalia, Qu, Liming, Rose, Lynda M., Salfati, Elias, Saxena, Richa, Scholz, Markus, Smith, Albert V., Tikkanen, Emmi, Uitterlinden, Andre, Yang, Xueli, Zhang, Weihua, Zhao, Wei, de Andrade, Mariza, de Vries, Paul S., van Zuydam, Natalie R., Anand, Sonia S., Bertram, Lars, Beutner, Frank, Dedoussis, George, Frossard, Philippe, Gauguier, Dominique, Goodall, Alison H., Gottesman, Omri, Haber, Marc, Han, Bok-Ghee, Huang, Jianfeng, Jalilzadeh, Shapour, Kessler, Thorsten, König, Inke R., Lannfelt, Lars, Lieb, Wolfgang, Lind, Lars, Lindgren, Cecilia M., Lokki, Maisa, Magnusson, Patrik K., Mallick, Nadeem H., Mehra, Narinder, Meitinger, Thomas, Memon, Fazal-ur-Rehman, Morris, Andrew P., Nieminen, Markku S., Pedersen, Nancy L., Peters, Annette, Rallidis, Loukianos S., Rasheed, Asif, Samuel, Maria, Shah, Svati H., Sinisalo, Juha, Stirrups, Kathleen E., Trompet, Stella, Wang, Laiyuan, Zaman, Khan S., Ardissino, Diego, Boerwinkle, Eric, Borecki, Ingrid B., Bottinger, Erwin P., Buring, Julie E., Chambers, John C., Collins, Rory, Cupples, L Adrienne, Danesh, John, Demuth, Ilja, Elosua, Roberto, Epstein, Stephen E., Esko, Tõnu, Feitosa, Mary F., Franco, Oscar H., Franzosi, Maria Grazia, Granger, Christopher B., Gu, Dongfeng, Gudnason, Vilmundur, Hall, Alistair S., Hamsten, Anders, Harris, Tamara B., Hazen, Stanley L., Hengstenberg, Christian, Hofman, Albert, Ingelsson, Erik, Iribarren, Carlos, Jukema, J Wouter, Karhunen, Pekka J., Kim, Bong-Jo, Kooner, Jaspal S., Kullo, Iftikhar J., Lehtimäki, Terho, Loos, Ruth J., Melander, Olle, Metspalu, Andres, März, Winfried, Palmer, Colin N., Perola, Markus, Quertermous, Thomas, Rader, Daniel J., Ridker, Paul M., Ripatti, Samuli, Roberts, Robert, Salomaa, Veikko, Sanghera, Dharambir K., Schwartz, Stephen M., Seedorf, Udo, Stewart, Alexandre F., Stott, David J., Thiery, Joachim, Zalloua, Pierre A., O'Donnell, Christopher J., Reilly, Muredach P., Assimes, Themistocles L., Thompson, John R., Erdmann, Jeanette, Clarke, Robert, Watkins, Hugh, Kathiresan, Sekar, McPherson, Ruth, Deloukas, Panos, Schunkert, Heribert, Samani, Nilesh J., Farrall, Martin, Adlam, David, Olson, Timothy M., Combaret, Nicolas, Kovacic, Jason C., Iismaa, Siiri E., Al-Hussaini, Abtehale, O'Byrne, Megan M., Bouajila, Sara, Georges, Adrien, Mishra, Ketan, Braund, Peter S., d’Escamard, Valentina, Huang, Siying, Margaritis, Marios, Kadian-Dodov, Daniella, Welch, Catherine A., Mazurkiewicz, Stephani, Jeunemaitre, Xavier, Wong, Claire Mei Yi, Giannoulatou, Eleni, Sweeting, Michael, Muller, David, Wood, Alice, McGrath-Cadell, Lucy, Fatkin, Diane, Dunwoodie, Sally L., Harvey, Richard, Holloway, Cameron, Empana, Jean-Philippe, Jouven, Xavier, Olin, Jeffrey W., Gulati, Rajiv, Tweet, Marysia S., Hayes, Sharonne N., Graham, Robert M., and Bouatia-Naji, Nabila
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- 2019
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20. Student Understanding of Taylor Series Expansions in Statistical Mechanics
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Smith, Trevor I., Thompson, John R., and Mountcastle, Donald B.
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Physics - Physics Education - Abstract
One goal of physics instruction is to have students learn to make physical meaning of specific mathematical ideas, concepts, and procedures in different physical settings. As part of research investigating student learning in statistical physics, we are developing curriculum materials that guide students through a derivation of the Boltzmann factor, using a Taylor series expansion of entropy. Using results from written surveys, classroom observations, and both individual think-aloud and teaching interviews, we present evidence that many students can recognize and interpret series expansions, but they often lack fluency with the Taylor series despite previous exposures in both calculus and physics courses. We present students' successes and failures both using and interpreting Taylor series expansions in a variety of contexts., Comment: 13 pages, 2 figures
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- 2011
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21. Probing Student Understanding With Alternative Questioning Strategies
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Hawkins, Jeffrey M., Frank, Brian W., Thompson, John R., Wittmann, Michael C., and Wemyss, Thomas M.
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Physics - Physics Education - Abstract
Common research tasks ask students to identify a correct answer and justify their answer choice. We propose expanding the array of research tasks to access different knowledge that students might have. By asking students to discuss answers they may not have chosen naturally, we can investigate students' abilities to explain something that is already established or to disprove an incorrect response. The results of these research tasks also provide us with information about how students' responses vary across the different tasks. We discuss three underused question types, their possible benefits and some preliminary results from an electric circuits pretest utilizing these new question types. We find that the answer students most commonly choose as correct is the same choice most commonly eliminated as incorrect. Also, students given the correct answer can provide valuable reasoning to explain it, but they do not spontaneously identify it as the correct answer.
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- 2011
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22. Students' Consistency of Graphical Vector Addition Method on 2-D Vector Addition Tasks
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Hawkins, Jeffrey M., Thompson, John R., and Wittmann, Michael
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Physics - Physics Education - Abstract
In a series of ten two-dimensional graphical vector addition questions with varying visual representations, most students stuck to a single solution method, be it correct or incorrect. Changes to the visual representation include placing vectors on a grid, making the vectors arrangements symmetric, varying the separation between vectors, and reversing the direction of either vector. We discuss the questions asked of students and their responses, emphasizing the results of one student who did change solution methods during an interview., Comment: Published in 2009 Physics Education Research Conference proceedings. 4 Pages
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- 2010
23. Students' Responses To Different Representations Of A Vector Addition Question
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Hawkins, Jeffrey M., Thompson, John R., Wittmann, Michael C., Sayre, Eleanor C., and Frank, Brian W.
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Physics - Physics Education - Abstract
We investigate if the visual representation of vectors can affect which methods students use to add them. We gave students one of four questions with different graphical representations, asking students to add the same two vectors. For students in an algebra-based class the arrangement of the vectors had a statistically significant effect on the vector addition method chosen while the addition or removal of a grid did not., Comment: Accepted by Physics Education Research Conference (PERC) Proceedings, 4 Pages
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- 2010
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24. An Overview of Machine Learning for Asset Management
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Lee, Yongjae, primary, Thompson, John R. J., additional, Kim, Jang Ho, additional, Kim, Woo Chang, additional, and Fabozzi, Francesco A., additional
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- 2023
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25. Integrated approaches in physics education: A graduate level course in physics, pedagogy, and education research
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Wittmann, Michael C. and Thompson, John R.
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Physics - Physics Education - Abstract
We describe a course designed to help future educators build an integrated understanding of the different elements of physics education research (PER), including: research into student learning, content knowledge from the perspective of how it is learned, and reform-based curricula together with evidence of their effectiveness. Course elements include equal parts of studying physics through proven curricula and discussion of research results in the context of the PER literature. We provide examples of the course content and structure as well as representative examples of student learning in the class., Comment: 13 pages, 2 tables, 3 figures. Submitted to the American Journal of Physics on August 24, 2006
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- 2006
26. Synthesis and characterization of a photoaffinity labelling probe based on the structure of the cystic fibrosis drug ivacaftor
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Hamilton, C. Michael, Hung, Maurita, Chen, Gang, Qureshi, Zafar, Thompson, John R., Sun, Bingyun, Bear, Christine E., and Young, Robert N.
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- 2018
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27. Versatile synthetic route to carbocyclic N-Acetylneuraminic acid and its derivatives
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Mohan, Sankar, Thompson, John R., Pinto, B. Mario, and Bennet, Andrew J.
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- 2018
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28. Evaluation of 99mTc-sulfonamide and sulfocoumarin derivatives for imaging carbonic anhydrase IX expression
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Nakai, Misaki, Pan, Jihne, Lin, Kuo-Shyan, Thompson, John R., Nocentini, Alessio, Supuran, Claudiu T., Nakabayashi, Yasuo, and Storr, Tim
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- 2018
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29. Effects of 3years of lasofoxifene treatment on bone turnover markers in women with postmenopausal osteoporosis
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Eastell, Richard, Reid, David M, Vukicevic, Slobodan, Ensrud, Kristine E, LaCroix, Andrea Z, Thompson, John R, Thompson, David D, and Cummings, Steven R
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Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Research ,Clinical Trials and Supportive Activities ,Aging ,Osteoporosis ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Musculoskeletal ,Aged ,Aged ,80 and over ,Biomarkers ,Bone Density ,Bone Remodeling ,Collagen Type I ,Female ,Humans ,Middle Aged ,Osteoporosis ,Postmenopausal ,Peptides ,Placebos ,Pyrrolidines ,Tetrahydronaphthalenes ,Time Factors ,Treatment Outcome ,Bone turnover marker ,Clinical trial ,Treatment ,Biological Sciences ,Engineering ,Medical and Health Sciences ,Endocrinology & Metabolism ,Clinical sciences - Abstract
The aims of this study were to describe the changes in bone turnover markers (BTMs) in response to lasofoxifene therapy; to describe the changes in BTMs in the individual; and to examine the relationships between BTM levels on treatment and treatment outcomes. Women (n=1126) aged 59-80years with femoral neck or spine bone mineral density T-scores ≤-2.5 were randomized to lasofoxifene 0.25mg/d, 0.5mg/d, or placebo for 5years. We measured serum C-telopeptide of type I collagen (CTX) and serum procollagen I N-propeptide (PINP), osteocalcin, and bone alkaline phosphatase (ALP) at baseline and at 1, 3, 6, 12, 24, and 36months. Lasofoxifene therapy resulted in a decrease in the concentrations of bone resorption and bone formation markers compared with placebo; the decrease was maximal between 6 and 24months. The effect of lasofoxifene 0.5mg/d was similar to that of lasofoxifene 0.25mg/d. The decrease in bone ALP was less than the decreases in CTX, osteocalcin, and PINP. Lasofoxifene therapy 0.5mg/d resulted in BTM-defined response rates for CTX (decrease in concentration from baseline >60%), PINP (>50%), and bone ALP (>30%) of 35%, 45%, and 43% of women at month 12, respectively, compared with placebo responses of 4%, 4%, and 7%. In contrast, the increase in BMD took longer (50% responded after 36months of lasofoxifene 0.5mg/d) and was not as specific (15% of placebo group responded). Bone density change was weakly inversely correlated with change in the concentrations of BTMs. BTMs may prove useful in the monitoring of the response to lasofoxifene treatment for women with postmenopausal osteoporosis early in the course of treatment.
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- 2012
30. Effects of 3 years of lasofoxifene treatment on bone turnover markers in women with postmenopausal osteoporosis.
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Eastell, Richard, Reid, David M, Vukicevic, Slobodan, Ensrud, Kristine E, LaCroix, Andrea Z, Thompson, John R, Thompson, David D, and Cummings, Steven R
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Humans ,Osteoporosis ,Postmenopausal ,Pyrrolidines ,Tetrahydronaphthalenes ,Collagen Type I ,Peptides ,Biological Markers ,Placebos ,Treatment Outcome ,Bone Remodeling ,Bone Density ,Time Factors ,Aged ,Aged ,80 and over ,Middle Aged ,Female ,Biomarkers ,Osteoporosis ,Bone turnover marker ,Clinical trial ,Treatment ,Postmenopausal ,and over ,Endocrinology & Metabolism ,Medical and Health Sciences ,Biological Sciences ,Engineering - Abstract
The aims of this study were to describe the changes in bone turnover markers (BTMs) in response to lasofoxifene therapy; to describe the changes in BTMs in the individual; and to examine the relationships between BTM levels on treatment and treatment outcomes. Women (n=1126) aged 59-80years with femoral neck or spine bone mineral density T-scores ≤-2.5 were randomized to lasofoxifene 0.25mg/d, 0.5mg/d, or placebo for 5years. We measured serum C-telopeptide of type I collagen (CTX) and serum procollagen I N-propeptide (PINP), osteocalcin, and bone alkaline phosphatase (ALP) at baseline and at 1, 3, 6, 12, 24, and 36months. Lasofoxifene therapy resulted in a decrease in the concentrations of bone resorption and bone formation markers compared with placebo; the decrease was maximal between 6 and 24months. The effect of lasofoxifene 0.5mg/d was similar to that of lasofoxifene 0.25mg/d. The decrease in bone ALP was less than the decreases in CTX, osteocalcin, and PINP. Lasofoxifene therapy 0.5mg/d resulted in BTM-defined response rates for CTX (decrease in concentration from baseline >60%), PINP (>50%), and bone ALP (>30%) of 35%, 45%, and 43% of women at month 12, respectively, compared with placebo responses of 4%, 4%, and 7%. In contrast, the increase in BMD took longer (50% responded after 36months of lasofoxifene 0.5mg/d) and was not as specific (15% of placebo group responded). Bone density change was weakly inversely correlated with change in the concentrations of BTMs. BTMs may prove useful in the monitoring of the response to lasofoxifene treatment for women with postmenopausal osteoporosis early in the course of treatment.
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- 2012
31. Breast Cancer Incidence in the Randomized PEARL Trial of Lasofoxifene in Postmenopausal Osteoporotic Women
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LaCroix, Andrea Z, Powles, Trevor, Osborne, C Kent, Wolter, Kevin, Thompson, John R, Thompson, David D, Allred, D Craig, Armstrong, Róisín, Cummings, Steve R, Eastell, Richard, Ensrud, Kristine E, Goss, Paul, Lee, Andrew, Neven, Patrick, Reid, David M, Curto, Madelyn, and Vukicevic, Slobodan
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Clinical Trials and Supportive Activities ,Clinical Research ,Estrogen ,Cancer ,Breast Cancer ,Osteoporosis ,Aging ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Aged ,Aged ,80 and over ,Anticarcinogenic Agents ,Biomarkers ,Tumor ,Bone Density ,Bone Density Conservation Agents ,Breast Neoplasms ,Carcinoma ,Ductal ,Breast ,Case-Control Studies ,Double-Blind Method ,Estradiol ,Female ,Fractures ,Bone ,Humans ,Incidence ,Mammography ,Middle Aged ,Odds Ratio ,Osteoporosis ,Postmenopausal ,Primary Prevention ,Pyrrolidines ,Receptors ,Estrogen ,Risk Assessment ,Selective Estrogen Receptor Modulators ,Sex Hormone-Binding Globulin ,Tetrahydronaphthalenes ,Treatment Outcome ,United States ,PEARL Investigators ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
BackgroundCurrently available selective estrogen receptor modulators reduce the risk of breast cancer, but they are not widely used. In the Postmenopausal Evaluation and Risk-Reduction with Lasofoxifene (PEARL) trial, lasofoxifene was shown to reduce the risk of estrogen receptor-positive (ER+) breast cancer, nonvertebral and vertebral fractures, coronary artery disease, and stroke, but the effects on total breast cancer (invasive and ductal carcinoma in situ, ER+ and estrogen receptor-negative [ER-]) and ER+ invasive breast cancer are unknown.MethodsPostmenopausal women (n = 8556) aged 59-80 years with low bone density and normal mammograms were randomly assigned to two doses of lasofoxifene (0.25 and 0.5 mg) or placebo. The primary endpoints of the PEARL trial were incidence of ER+ breast cancer and nonvertebral fractures at 5 years. A nested case-control study of 49 incident breast cancer case patients and 156 unaffected control subjects from the PEARL trial was performed to evaluate treatment effects on risk of total and ER+ invasive breast cancer by baseline serum estradiol and sex hormone-binding globulin levels using logistic regression models. Cox proportional hazards models were used to evaluate risk of total breast cancer and ER+ invasive breast cancer using intention-to-treat analysis. All statistical tests were two-sided.ResultsBreast cancer was confirmed in 49 women. Compared with placebo, 0.5 mg of lasofoxifene statistically significantly reduced the risk of total breast cancer by 79% (hazard ratio = 0.21; 95% confidence interval [CI] = 0.08 to 0.55) and ER+ invasive breast cancer by 83% (hazard ratio = 0.17; 95% CI = 0.05 to 0.57). The effects of 0.5 mg of lasofoxifene on total breast cancer were similar regardless of Gail score, whereas the effects were markedly stronger for women with baseline estradiol levels greater than the median (odds ratio = 0.11; 95% CI = 0.02 to 0.51) vs those with levels less than the median (odds ratio = 0.78; 95% CI = 0.16 to 3.79; P(interaction) = .04).ConclusionA 0.5-mg dose of lasofoxifene appears to reduce the risks of both total and ER+ invasive breast cancer in postmenopausal women with osteoporosis.
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- 2010
32. Lasofoxifene and Cardiovascular Events in Postmenopausal Women With Osteoporosis
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Ensrud, Kristine, LaCroix, Andrea, Thompson, John R, Thompson, David D, Eastell, Richard, Reid, David M, Vukicevic, Slobodan, Cauley, Jane, Barrett-Connor, Elizabeth, Armstrong, Roisin, Welty, Francine, and Cummings, Steven
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Epidemiology ,Biomedical and Clinical Sciences ,Health Sciences ,Heart Disease - Coronary Heart Disease ,Clinical Research ,Atherosclerosis ,Clinical Trials and Supportive Activities ,Cardiovascular ,Osteoporosis ,Heart Disease ,Aging ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Aged ,Aged ,80 and over ,Breast Neoplasms ,Coronary Disease ,Dose-Response Relationship ,Drug ,Double-Blind Method ,Endpoint Determination ,Female ,Follow-Up Studies ,Fractures ,Bone ,Humans ,Incidence ,Longitudinal Studies ,Middle Aged ,Osteoporosis ,Postmenopausal ,Pyrrolidines ,Receptors ,Estrogen ,Risk Factors ,Stroke ,Tetrahydronaphthalenes ,Treatment Outcome ,clinical trial ,coronary heart disease ,selective estrogen receptor modulator ,stroke ,Cardiorespiratory Medicine and Haematology ,Clinical Sciences ,Public Health and Health Services ,Cardiovascular System & Hematology ,Cardiovascular medicine and haematology ,Clinical sciences ,Sports science and exercise - Abstract
BackgroundIn the Postmenopausal Evaluation and Risk Reduction With Lasofoxifene (PEARL) trial, women assigned to lasofoxifene 0.5 mg/d had a lower risk of major coronary heart disease (CHD) events and stroke, whereas women assigned to lasofoxifene 0.25 mg/d had a lower risk of stroke. Both doses of lasofoxifene increased the risk of venous thromboembolic events. In this report, we provide comprehensive cardiovascular end-point data, including component events comprising the composite end point of major CHD events, and evaluate whether the effect of lasofoxifene 0.5 mg/d is consistent across different categories of CHD risk.Methods and resultsIn this study, 8556 women 59 to 80 years of age with osteoporosis received lasofoxifene 0.25 mg/d, lasofoxifene 0.5 mg/d, or placebo for 5 years. Cardiovascular events, including major CHD events, were prespecified secondary end points. Compared with placebo, lasofoxifene 0.5 mg/d reduced the risk of major CHD events 32% (hazard ratio, 0.68; 95% confidence interval, 0.50 to 0.93), including the risk of coronary revascularization (hazard ratio, 0.56, 95% confidence interval, 0.32 to 0.98). Reductions in risk of hospitalization for unstable angina (hazard ratio, 0.55; 95% confidence interval, 0.29 to 1.04) and diagnosis of new ischemic heart disease (hazard ratio, 0.52; 95% confidence interval, 0.26 to 1.04) nearly reached significance (P=0.06 for both comparisons). Although both hazard ratios were
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- 2010
33. Biological, clinical and population relevance of 95 loci for blood lipids
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Teslovich, Tanya M, Musunuru, Kiran, Smith, Albert V, Edmondson, Andrew C, Stylianou, Ioannis M, Koseki, Masahiro, Pirruccello, James P, Ripatti, Samuli, Chasman, Daniel I, Willer, Cristen J, Johansen, Christopher T, Fouchier, Sigrid W, Isaacs, Aaron, Peloso, Gina M, Barbalic, Maja, Ricketts, Sally L, Bis, Joshua C, Aulchenko, Yurii S, Thorleifsson, Gudmar, Feitosa, Mary F, Chambers, John, Orho-Melander, Marju, Melander, Olle, Johnson, Toby, Li, Xiaohui, Guo, Xiuqing, Li, Mingyao, Shin Cho, Yoon, Jin Go, Min, Jin Kim, Young, Lee, Jong-Young, Park, Taesung, Kim, Kyunga, Sim, Xueling, Twee-Hee Ong, Rick, Croteau-Chonka, Damien C, Lange, Leslie A, Smith, Joshua D, Song, Kijoung, Hua Zhao, Jing, Yuan, Xin, Luan, Jian’an, Lamina, Claudia, Ziegler, Andreas, Zhang, Weihua, Zee, Robert YL, Wright, Alan F, Witteman, Jacqueline CM, Wilson, James F, Willemsen, Gonneke, Wichmann, H-Erich, Whitfield, John B, Waterworth, Dawn M, Wareham, Nicholas J, Waeber, Gérard, Vollenweider, Peter, Voight, Benjamin F, Vitart, Veronique, Uitterlinden, Andre G, Uda, Manuela, Tuomilehto, Jaakko, Thompson, John R, Tanaka, Toshiko, Surakka, Ida, Stringham, Heather M, Spector, Tim D, Soranzo, Nicole, Smit, Johannes H, Sinisalo, Juha, Silander, Kaisa, Sijbrands, Eric JG, Scuteri, Angelo, Scott, James, Schlessinger, David, Sanna, Serena, Salomaa, Veikko, Saharinen, Juha, Sabatti, Chiara, Ruokonen, Aimo, Rudan, Igor, Rose, Lynda M, Roberts, Robert, Rieder, Mark, Psaty, Bruce M, Pramstaller, Peter P, Pichler, Irene, Perola, Markus, Penninx, Brenda WJH, Pedersen, Nancy L, Pattaro, Cristian, Parker, Alex N, Pare, Guillaume, Oostra, Ben A, O’Donnell, Christopher J, Nieminen, Markku S, Nickerson, Deborah A, Montgomery, Grant W, Meitinger, Thomas, McPherson, Ruth, and McCarthy, Mark I
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Biological Sciences ,Biomedical and Clinical Sciences ,Genetics ,Heart Disease ,Human Genome ,Cardiovascular ,Prevention ,Atherosclerosis ,Heart Disease - Coronary Heart Disease ,2.1 Biological and endogenous factors ,Aetiology ,Black or African American ,Animals ,Asian People ,Cholesterol ,HDL ,Cholesterol ,LDL ,Coronary Artery Disease ,Europe ,Female ,Genetic Loci ,Genome-Wide Association Study ,Genotype ,Humans ,Lipid Metabolism ,Lipids ,Liver ,Male ,Mice ,N-Acetylgalactosaminyltransferases ,Phenotype ,Polymorphism ,Single Nucleotide ,Protein Phosphatase 1 ,Reproducibility of Results ,Triglycerides ,White People ,Polypeptide N-acetylgalactosaminyltransferase ,General Science & Technology - Abstract
Plasma concentrations of total cholesterol, low-density lipoprotein cholesterol, high-density lipoprotein cholesterol and triglycerides are among the most important risk factors for coronary artery disease (CAD) and are targets for therapeutic intervention. We screened the genome for common variants associated with plasma lipids in >100,000 individuals of European ancestry. Here we report 95 significantly associated loci (P < 5 x 10(-8)), with 59 showing genome-wide significant association with lipid traits for the first time. The newly reported associations include single nucleotide polymorphisms (SNPs) near known lipid regulators (for example, CYP7A1, NPC1L1 and SCARB1) as well as in scores of loci not previously implicated in lipoprotein metabolism. The 95 loci contribute not only to normal variation in lipid traits but also to extreme lipid phenotypes and have an impact on lipid traits in three non-European populations (East Asians, South Asians and African Americans). Our results identify several novel loci associated with plasma lipids that are also associated with CAD. Finally, we validated three of the novel genes-GALNT2, PPP1R3B and TTC39B-with experiments in mouse models. Taken together, our findings provide the foundation to develop a broader biological understanding of lipoprotein metabolism and to identify new therapeutic opportunities for the prevention of CAD.
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- 2010
34. Age at menarche and lung function: a Mendelian randomization study
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Gill, Dipender, Sheehan, Nuala A., Wielscher, Matthias, Shrine, Nick, Amaral, Andre F. S., Thompson, John R., Granell, Raquel, Leynaert, Bénédicte, Real, Francisco Gómez, Hall, Ian P., Tobin, Martin D., Auvinen, Juha, Ring, Susan M., Jarvelin, Marjo-Riitta, Wain, Louise V., Henderson, John, Jarvis, Deborah, and Minelli, Cosetta
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- 2017
35. Chart Reader: Accessible Visualization Experiences Designed with Screen Reader Users
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Thompson, John R, primary, Martinez, Jesse J, additional, Sarikaya, Alper, additional, Cutrell, Edward, additional, and Lee, Bongshin, additional
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- 2023
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36. Analytical Derivation: An Epistemic Game for Solving Mathematically Based Physics Problems
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Bajracharya, Rabindra R. and Thompson, John R.
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Problem solving, which often involves multiple steps, is an integral part of physics learning and teaching. Using the perspective of the epistemic game, we documented a specific game that is commonly pursued by students while solving mathematically based physics problems: the "analytical derivation" game. This game involves deriving an equation through symbolic manipulations and routine mathematical operations, usually without any physical interpretation of the processes. This game often creates cognitive obstacles in students, preventing them from using alternative resources or better approaches during problem solving. We conducted hour-long, semi-structured, individual interviews with fourteen introductory physics students. Students were asked to solve four "pseudophysics" problems containing algebraic and graphical representations. The problems required the application of the fundamental theorem of calculus (FTC), which is one of the most frequently used mathematical concepts in physics problem solving. We show that the "analytical derivation" game is necessary, but not sufficient, to solve mathematically based physics problems, specifically those involving graphical representations.
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- 2016
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37. Emissive and birefringent Hg[(CN).sub.2]-based coordination polymer materials with very distorted coordination geometries
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Guan, David, Thompson, John R., and Leznoff, Daniel B.
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Double refraction -- Observations ,Mercury compounds -- Optical properties ,Chemistry - Abstract
New compounds and coordination polymers with highly polarizable metals (M = Hg, Pb) and 2,2';6'2'-terpyridine (terpy) and 2,6-bis(benzimidazol-2-yl)pyridine (bbp) ligands have been synthesized and characterized for their photo-physical and optical properties. Hg(L)[(CN).sub.2] (L = terpy, bbp) exhibit [pi]-stacking interactions, which form a supramolecular alignment of the planar terpy and bbp units. Pb(terpy)[X.sub.2][[Hg[(CN).sub.2]].sub.0.5] (X = Cl, Br) generate one-dimensional coordination polymers through bridging Hg[(CN).sub.2] linkers and hydrogen-bonding interactions. All of the metal centres have very distorted coordination geometries. Hg(L)[(CN).sub.2] (L = terpy, bbp) and Pb(terpy)[Br.sub.2][[Hg[(CN).sub.2]].sub.0.5] show terpy or bbp based emission. The materials are very birefringent, with [DELTA]n ranging from 0.37(2) to 0.45(2). The magnitude of the observed birefringence depends on the orientation of the highly polarizable terpy and bbp units in relation to the viewing axis of the crystals. These materials represent rare examples of multifunctional emissive and birefringent systems. Key words: coordination polymer, cyanide, terpyridine, bis(benzimidazol-2-yl)pyridine, stereochemically active lone pair. Nous avons synthetise de nouveaux composes et polymeres de coordination contenant des metaux hautement polarisables (M = Hg, Pb) et les ligands 2,2';6'2'-terpyridine (terpy) et 2,6-bis(benzimidazol-2-yl)pyridine (bbp), et nous les avons caracterises selon leurs proprietes photophysiques et optiques. Les complexes Hg(L)[(CN).sub.2] (L = terpy, bbp) presentent des interactions p-p qui donnent lieu a un alignement supramoleculaire des motifs planaires terpy et bbp. Les complexes Pb(terpy)[X.sub.2] [[Hg[(CN).sub.2]].sub.0.5] (X = Cl, Br) generent des polymeres de coordination en 1D maintenus par des ponts Hg[(CN).sub.2] et des liaisons hydrogene. Tous les centres metalliques possedent une geometrie de coordination tres deformee. Les complexes Hg(L)[(CN).sub.2] (L = terpy, bbp) et Pb(terpy)[Br.sub.2][[Hg[(CN).sub.2]].sub.0.5] manifestent une capacite d'emission attribuable aux ligands terpy et bbp. Ces composes sont tres birefringents, leur An allant de 0,37(2) a 0,45(2). L'ampleur de la birefringence observee depend de l'orientation des unites tres polarisables terpy et bbp par rapport a l'axe de visualisation des cristaux. Ces composes font partie des rares exemples de systemes multifonctionnels emissifs et birefringents. [Traduit par la Redaction] Mots-cles : polymere de coordination, cyanure, terpyridine, bis(benzimidazol-2-yl)pyridine, doublet non liant stereochimiquement reactif., Introduction Coordination polymers are metal-ligand networks that extend in one, two, or three dimensions and are formed through coordination bonds between metal nodes and linker units. (1,2) The structural geometries [...]
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- 2018
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38. Octahedral Co(III) salen complexes: the role of peripheral ligand electronics on axial ligand release upon reduction
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Zhang, Chen, Sutherland, Mathew, Herasymchuk, Khrystyna, Clarke, Ryan M., Thompson, John R., Chiang, Linus, Walsby, Charles J., and Storr, and Tim
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Oxidation-reduction reactions -- Observations ,Cobalt compounds -- Chemical properties ,Ligands (Chemistry) -- Observations ,Chemistry - Abstract
A series of octahedral [Co.sup.III] salen complexes (where salen represents a [N.sub.2][O.sub.2] bis-Schiff-base bis-phenolate framework) were prepared with axial imidazole ligating groups. When using 1-methylimidazole (1-MeIm) axial ligands, the [Co.sup.III]/[Co.dup.II] reduction potential could be altered by 220 mV via variation of the electron-donating ability of the para-ring substituents (R = H(1), OMe (2), tBu (3), Br (4), N[O.sub.2] (5), and C[F.sub.3] (6)). In addition, the irreversibility of the reduction process suggested substantial geometrical changes and axial ligand exchange upon reduction to the more labile [Co.sup.II] oxidation state. Installing an imidazole-coumarin conjugate as the axial ligands resulted in fluorescence quenching when bound to the [Co.sup.III] centre (R = H(7), OMe (8), and C[F.sub.3] (9)). The redox properties and fluorescence increase upon ligand release for 7-9 were studied under reducing conditions and in the presence of excess competing ligand (1-MeIm). It was determined that the Lewis acidity of the [Co.sup.III] centre was the dominant factor in controlling axial ligand exchange for this series of complexes. Key words: cobalt, cancer, hypoxia, reduction, ligand exchange. Nous avons synthetise une serie de complexes de [Co.sup.III] salen octaedriques (ou salen represente un ligand bis-phenolate-bis-base de Schiff a coordination de type [N.sub.2][O.sub.2]) coordonnes a des groupements axiaux a base d'imidazole. Lorsque nous avons employe des ligands axiaux a base de 1-methylimidazole (1-MeIm), le potentiel de reduction du [Co.sup.III] en [Co.sup.II] pouvait varier de 220 mV selon la capacite des substituants en position para sur le noyau aromatique [R = H(1), OMe (2), tBu (3), Br (4), N[O.sub.2] (5)et C[F.sub.3] (6)] a donner des electrons. De plus, le fait que la reduction etait irreversible semble indiquer que des changements geometriques substantiels et un echange de ligands axiaux se sont produits lors de la reduction du cobalt vers l'etat d'oxydation plus labile ([Co.sup.II]). L'ajout d'un conjugue de type imidazole-coumarine comme ligands axiaux s'est traduit par une extinction de la fluorescence au moment de sa liaison a l'atome central de [Co.sup.III] [R = H(7), OMe (8)etC[F.sub.3] (9)]. Nous avons etudie les proprietes d'oxydoreduction et l'amplification de la fluorescence des composes 7 a 9 lorsque le ligand est libere en conditions reductrices et en presence d'un exces du ligand en competition (1-MeIm). Nous avons etabli que, dans cette serie de complexes, l'acidite de Lewis de l'atome central de [Co.sup.III] etait le facteur determinant dans l'echange de ligands. [Traduit par la Redaction] Mots-cles: cobalt, cancer, hypoxie, reduction, echange de ligands., Introduction There is an increasing interest in metal-based drugs for diagnostic and therapeutic applications, due to the need to increase both potency and selectivity (.1-5) The ability to vary the [...]
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- 2018
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39. An Exploratory Study of Brand Loyalty in Selecting Travel Destinations
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Tat, Peter K., Thompson, John R., Academy of Marketing Science, Rogers III, John C., editor, and Lamb, Jr., Charles W., editor
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- 2015
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40. Modifiable traits, healthy behaviours, and leukocyte telomere length: a population-based study in UK Biobank
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Bountziouka, Vasiliki, Musicha, Crispin, Allara, Elias, Kaptoge, Stephen, Wang, Qingning, Angelantonio, Emanuele Di, Butterworth, Adam S, Thompson, John R, Danesh, John N, Wood, Angela M, Nelson, Christopher P, Codd, Veryan, Samani, Nilesh J, Allara, Elias [0000-0002-1634-8330], Kaptoge, Stephen [0000-0002-1155-4872], Di Angelantonio, Emanuele [0000-0001-8776-6719], Butterworth, Adam [0000-0002-6915-9015], Danesh, John [0000-0003-1158-6791], Wood, Angela [0000-0002-7937-304X], and Apollo - University of Cambridge Repository
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Male ,Health (social science) ,Health Status ,Health Behavior ,Coronary Artery Disease ,Mendelian Randomization Analysis ,Telomere ,United Kingdom ,Psychiatry and Mental health ,Leukocytes ,Humans ,Female ,Geriatrics and Gerontology ,Family Practice ,Biological Specimen Banks - Abstract
BACKGROUND: Telomere length is associated with risk of several age-related diseases and cancers. We aimed to investigate the extent to which telomere length might be modifiable through lifestyle and behaviour, and whether such modification has any clinical consequences. METHODS: In this population-based study, we included participants from UK Biobank who had leukocyte telomere length (LTL) measurement, ethnicity, and white blood cell count data. We investigated associations of LTL with 117 potentially modifiable traits, as well as two indices of healthy behaviours incorporating between them smoking, physical activity, diet, maintenance of a healthy bodyweight, and alcohol intake, using both available and imputed data. To help interpretation, associations were summarised as the number of equivalent years of age-related change in LTL by dividing the trait β coefficients with the age β coefficient. We used mendelian randomisation to test causality of selected associations. We investigated whether the associations of LTL with 22 diseases were modified by the number of healthy behaviours and the extent to which the associations of more healthy behaviours with greater life expectancy and lower risk of coronary artery disease might be mediated through LTL. FINDINGS: 422 797 participants were available for the analysis (227 620 [53·8%] were women and 400 036 [94·6%] were White). 71 traits showed significant (p
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- 2022
41. Birefringent, emissive cyanometallate-based coordination polymer materials containing group(II) metal-terpyridine building blocks
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Thompson, John R., Goodman-Rendall, Kevin A.S., and Leznoff, Daniel B.
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- 2016
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42. A sheet structured MOF magnet: Poly[(1,10-phenanthroline)tetrakis(imidazolato)diiron(II)]
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Storr, Tim, Thompson, John R., Patrick, Brian O., Reiff, William M., Storr, Alan, and Thompson, Robert C.
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- 2016
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43. Beyond Mendelian randomization: how to interpret evidence of shared genetic predictors
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Burgess, Stephen, Butterworth, Adam S., and Thompson, John R.
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- 2016
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44. Kernel Metric Learning for Clustering Mixed-type Data
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Ghashti, Jesse S. and Thompson, John R. J.
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FOS: Computer and information sciences ,Computer Science - Machine Learning ,I.5.3 ,Other Statistics (stat.OT) ,G.3 ,Statistics - Computation ,62G07, 65D10 ,Machine Learning (cs.LG) ,Methodology (stat.ME) ,I.6.6 ,Statistics - Other Statistics ,Statistics - Methodology ,Computation (stat.CO) - Abstract
Distance-based clustering and classification are widely used in various fields to group mixed numeric and categorical data. A predefined distance measurement is used to cluster data points based on their dissimilarity. While there exist numerous distance-based measures for data with pure numerical attributes and several ordered and unordered categorical metrics, an optimal distance for mixed-type data is an open problem. Many metrics convert numerical attributes to categorical ones or vice versa. They handle the data points as a single attribute type or calculate a distance between each attribute separately and add them up. We propose a metric that uses mixed kernels to measure dissimilarity, with cross-validated optimal kernel bandwidths. Our approach improves clustering accuracy when utilized for existing distance-based clustering algorithms on simulated and real-world datasets containing pure continuous, categorical, and mixed-type data., Comment: 23 pages, 5 tables, 2 figures
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- 2023
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45. Student Understanding of the Boltzmann Factor
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Smith, Trevor I., Mountcastle, Donald B., and Thompson, John R.
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We present results of our investigation into student understanding of the physical significance and utility of the Boltzmann factor in several simple models. We identify various justifications, both correct and incorrect, that students use when answering written questions that require application of the Boltzmann factor. Results from written data as well as teaching interviews suggest that many students can neither recognize situations in which the Boltzmann factor is applicable nor articulate the physical significance of the Boltzmann factor as an expression for multiplicity, a fundamental quantity of statistical mechanics. The specific student difficulties seen in the written data led us to develop a guided-inquiry tutorial activity, centered around the derivation of the Boltzmann factor, for use in undergraduate statistical mechanics courses. We report on the development process of our tutorial, including data from teaching interviews and classroom observations of student discussions about the Boltzmann factor and its derivation during the tutorial development process. This additional information informed modifications that improved students' abilities to complete the tutorial during the allowed class time without sacrificing the effectiveness as we have measured it. These data also show an increase in students' appreciation of the origin and significance of the Boltzmann factor during the student discussions. Our findings provide evidence that working in groups to better understand the physical origins of the canonical probability distribution helps students gain a better understanding of when the Boltzmann factor is applicable and how to use it appropriately in answering relevant questions. [This paper is part of the Focused Collection on Upper Division Physics Courses.]
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- 2015
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46. Identifying Student Difficulties with Entropy, Heat Engines, and the Carnot Cycle
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Smith, Trevor I., Christensen, Warren M., Mountcastle, Donald B., and Thompson, John R.
- Abstract
We report on several specific student difficulties regarding the second law of thermodynamics in the context of heat engines within upper-division undergraduate thermal physics courses. Data come from ungraded written surveys, graded homework assignments, and videotaped classroom observations of tutorial activities. Written data show that students in these courses do not clearly articulate the connection between the Carnot cycle and the second law after lecture instruction. This result is consistent both within and across student populations. Observation data provide evidence for myriad difficulties related to entropy and heat engines, including students' struggles in reasoning about situations that are physically impossible and failures to differentiate between differential and net changes of state properties of a system. Results herein may be seen as the application of previously documented difficulties in the context of heat engines, but others are novel and emphasize the subtle and complex nature of cyclic processes and heat engines, which are central to the teaching and learning of thermodynamics and its applications. Moreover, the sophistication of these difficulties is indicative of the more advanced thinking required of students at the upper division, whose developing knowledge and understanding give rise to questions and struggles that are inaccessible to novices. [This paper is part of the Focused Collection on Upper Division Physics Courses.]
- Published
- 2015
- Full Text
- View/download PDF
47. Adult height and risk of 50 diseases: a combined epidemiological and genetic analysis
- Author
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Lai, Florence Y., Nath, Mintu, Hamby, Stephen E., Thompson, John R., Nelson, Christopher P., and Samani, Nilesh J.
- Published
- 2018
- Full Text
- View/download PDF
48. Genetic variants primarily associated with type 2 diabetes are related to coronary artery disease risk
- Author
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Jansen, Henning, Loley, Christina, Lieb, Wolfgang, Pencina, Michael J., Nelson, Christopher P., Kathiresan, Sekar, Peloso, Gina M., Voight, Benjamin F., Reilly, Muredach P., Assimes, Themistocles L., Boerwinkle, Eric, Hengstenberg, Christian, Laaksonen, Reijo, McPherson, Ruth, Roberts, Robert, Thorsteinsdottir, Unnur, Peters, Annette, Gieger, Christian, Rawal, Rajesh, Thompson, John R., König, Inke R., Vasan, Ramachandran S., Erdmann, Jeanette, Samani, Nilesh J., and Schunkert, Heribert
- Published
- 2015
- Full Text
- View/download PDF
49. Resolving a Half-Century-Long Controversy between (Magneto)optical and EPR Spectra of Single-Electron-Reduced [PcFe]−, [PcFeL]−, and [PcFeX]2– Complexes: Story of a Double Flip
- Author
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Schrage, Briana R., primary, Zhou, Wen, additional, Harrison, Laurel A., additional, Nevonen, Dustin E., additional, Thompson, John R., additional, Prosser, Kathleen E., additional, Walsby, Charles J., additional, Ziegler, Christopher J., additional, Leznoff, Daniel B., additional, and Nemykin, Victor N., additional
- Published
- 2022
- Full Text
- View/download PDF
50. Measuring the gap between elicited and revealed risk for investors: An empirical study
- Author
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Thompson, John R. J., primary, Feng, Longlong, additional, Reesor, R. Mark, additional, Grace, Chuck, additional, and Metzler, Adam, additional
- Published
- 2022
- Full Text
- View/download PDF
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