124 results on '"Thomas K F, Foo"'
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2. Frequency-dependent diffusion kurtosis imaging in the human brain using an oscillating gradient spin echo sequence and a high-performance head-only gradient.
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Erpeng Dai, Ante Zhu, Grant K. Yang, Kristin Quah, Ek T. Tan, Eric W. Fiveland, Thomas K. F. Foo, and Jennifer A. McNab
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- 2023
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3. Diffusion MRI with free gradient waveforms on a high-performance gradient system: Probing restriction and exchange in the human brain.
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Arthur Chakwizira, Ante Zhu, Thomas K. F. Foo, Carl-Fredrik Westin, Filip Szczepankiewicz, and Markus Nilsson
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- 2023
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4. Improved Resting-State Functional MRI Using Multi-Echo Echo-Planar Imaging on a Compact 3T MRI Scanner with High-Performance Gradients.
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Daehun Kang, Myung-Ho In, Hang Joon Jo, Maria A. Halverson, Nolan Meyer, Zaki Ahmed, Erin M. Gray, Radhika Madhavan, Thomas K. F. Foo, Brice Fernandez, David F. Black, Kirk M. Welker, Joshua D. Trzasko, John Huston, Matt A. Bernstein, and Yunhong Shu
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- 2023
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5. Calibration of concomitant field offsets using phase contrast MRI for asymmetric gradient coils
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Nastaren Abad, Seung‐Kyun Lee, Afis Ajala, Myung‐Ho In, Louis M. Frigo, Chitresh Bhushan, H. Douglas Morris, Yihe Hua, Vincent B. Ho, Matt A. Bernstein, and Thomas K. F. Foo
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Phantoms, Imaging ,Calibration ,Image Processing, Computer-Assisted ,Humans ,Radiology, Nuclear Medicine and imaging ,Artifacts ,Magnetic Resonance Imaging ,Retrospective Studies - Abstract
Asymmetric gradient coils introduce zeroth- and first-order concomitant field terms, in addition to higher-order terms common to both asymmetric and symmetric gradients. Salient to compensation strategies is the accurate calibration of the concomitant field spatial offset parameters for asymmetric coils. A method that allows for one-time calibration of the offset parameters is described.A modified phase contrast pulse sequence with single-sided bipolar flow encoding is proposed to calibrate the offsets for asymmetric, transverse gradient coils. By fitting the measured phase offsets to different gradient amplitudes, the spatial offsets were calculated by fitting the phase variation. This was used for calibrating real-time pre-emphasis compensation of the zeroth- and first-order concomitant fields.Image quality improvement with the proposed corrections was demonstrated in phantom and healthy volunteers with non-Cartesian and Cartesian trajectory acquisitions. Concomitant field compensation using the calibrated offsets resulted in a residual phase errorlt;3% at the highest gradient amplitude and demonstrated substantial reduction of image blur and slice position/selection artifacts.The proposed implementation provides an accurate method for calibrating spatial offsets that can be used for real-time concomitant field compensation of zeroth and first-order terms, substantially reducing artifacts without retrospective correction or sequence specific waveform modifications.
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- 2022
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6. Peripheral Nerve Stimulation (PNS) Analysis of MRI Head Gradient Coils with Human Body Models
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Yihe Hua, Desmond T. B. Yeo, and Thomas K. F. Foo
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The main objective of this chapter is to provide a comprehensive and intuitive introduction to MRI gradient coil related PNS modeling with human body models. We will present the fundamental concepts and analytical processes behind gradient coil-induced peripheral nerve stimulation (PNS) modeling and also show some new results of our work. We first describe the process of performing electromagnetic simulation of a gradient coil, the neurodynamic simulation of nerves, and the gradient coil design. Then, we present improvements of two existing human body models by adding more nerve trajectories in the head and upper body to reduce the discrepancies between the simulated and measured results for PNS thresholds in head gradient coils. Further, we apply the modified human body models to analyze three folded and non-folded gradient coils and reveal the relationship between the eddy current flow in the human body and the gradient coil wire pattern and its impact on the PNS. We also show the connection between concomitant fields and PNS and assess the accuracy of PNS calculations in human body models with simplified tissue properties. Finally, we give our thoughts on the future direction of this work.
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- 2022
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7. Improved Brain <scp>MR</scp> Imaging from a Compact, Lightweight 3T Scanner with <scp>High‐Performance</scp> Gradients
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Petrice M. Cogswell, Thomas K. F. Foo, Erin M. Gray, Norbert G. Campeau, John Huston, Emanuele Camerucci, Joshua D. Trzasko, Matt A. Bernstein, and Yunhong Shu
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Scanner ,Wilcoxon signed-rank test ,Image quality ,media_common.quotation_subject ,Fluid-attenuated inversion recovery ,Article ,030218 nuclear medicine & medical imaging ,White matter ,03 medical and health sciences ,0302 clinical medicine ,Neuroimaging ,medicine ,Humans ,Contrast (vision) ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Gray Matter ,media_common ,Artifact (error) ,business.industry ,Brain ,Magnetic Resonance Imaging ,medicine.anatomical_structure ,Artifacts ,business ,Nuclear medicine - Abstract
BACKGROUND A low-cryogen, compact 3T (C3T) MRI scanner with high-performance gradients capable of simultaneously achieving 80 mT/m gradient amplitude and 700 T/m/second slew rate has been in use to study research patients since March 2016 but has not been implemented in the clinical practice. PURPOSE To compare head MRI examinations obtained with the C3T system and a conventional whole-body 3T (WB3T) scanner in seven parameters across five commonly used brain imaging sequences. STUDY TYPE Prospective. SUBJECTS Thirty patients with a clinically indicated head MRI. SEQUENCE 3T; T1 FLAIR, T1 MP-RAGE, 3D T2 FLAIR, T2 FSE, and DWI. ASSESSMENT All patients tolerated the scans well. Three board-certified neuroradiologists scored the comparative quality of C3T and WB3T images in blinded fashion using a five-point Likert scale in terms of: signal-to-noise ratio, lesion conspicuity, motion artifact, gray/white matter contrast, cerebellar folia, susceptibility artifact, and overall quality. STATISTICAL TEST Left-sided, right-sided, and two-sided Wilcoxon signed rank test; Fisher's method. A P value
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- 2021
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8. Average SAR prediction, validation, and evaluation for a compact MR scanner head-sized RF coil
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Desmond T.B. Yeo, Shengzhen Tao, Daehun Kang, Thomas K. F. Foo, M.R. Tarasek, John Huston, Yunhong Shu, Yihe Hua, Matt A. Bernstein, and Erin M. Gray
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Scanner ,Upper body ,Computer science ,Phantoms, Imaging ,Radio Waves ,Acoustics ,Biomedical Engineering ,Biophysics ,Specific absorption rate ,Magnetic Resonance Imaging ,Article ,Patient Positioning ,Power (physics) ,Electromagnetic coil ,Coil geometry ,Head (vessel) ,Humans ,Radiology, Nuclear Medicine and imaging ,Computer Simulation ,Radiofrequency coil - Abstract
A recently developed compact 3 T (C3T) MRI scanner with high performance gradients [1, 2] has a dedicated radiofrequency (RF) transmit coil that exposes only the head, neck and a small portion of the upper body region during head-first scanning. Due to the unique coil geometry and patient positioning, the established SAR model used for a conventional whole-body scanner cannot be directly translated to the C3T. Here a specific absorption rate (SAR) estimation and validation framework was developed and used to implement a dedicated and accurate SAR prediction model for the C3T. Two different SAR prediction models for the C3T were defined and evaluated: one based on an anatomically derived exposed mass, and one using a fixed anatomical position located caudally to the RF coil to determine the exposed mass. After coil modeling and virtual human body simulation, the designed SAR prediction model was implemented on the C3T and verified with calorimetry and in vivo scan power monitoring. The fixed-demarcation exposed mass model was selected as appropriate exposed mass region to accurately estimate the SAR deposition in the patient on the C3T.
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- 2021
9. Automatic non-rigid registration of preoperative MRI and intraoperative US for US-guided neurosurgery - A preliminary study
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Thomas K. F. Foo, Desmond T.B. Yeo, Soumya Ghose, David M. Mills, Sarah F. Frisken, Alexandra J. Golby, and Jhimli Mitra
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medicine.medical_specialty ,Landmark ,medicine.diagnostic_test ,business.industry ,Computer science ,Ultrasound ,Magnetic resonance imaging ,Fluid shift ,Resection ,medicine ,Radiology ,Neurosurgery ,Structural deformation ,Image guidance ,business - Abstract
Image guidance aids neurosurgeons in making critical clinical decisions to achieve a safe maximal resection of diseased tissue. The brain however undergoes significant nonlinear structural deformation due to multiple factors, including dura opening, fluid shifts, and tissue resection. While ultrasound (US) has shown promise in monitoring brain deformation and as a navigation image source in its own right, magnetic resonance imaging (MRI) generally provides better contrast between tumor and brain tissue and pre-operative imaging can provide functional and connectivity information not available in US. Mapping pre-operative MRI (pMRI) onto intraoperative US (iUS) is therefore desirable for multimodal neurosurgical guidance. In this work, we present a novel approach that uses T1 intensity gradients to non-rigidly register pMRI to iUS. The method was validated on 22 datasets from the MICCAI CuRIOUS Challenge 2018 and an average landmark error of 4.89mm was achieved.
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- 2021
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10. Peripheral nerve stimulation limits of a high amplitude and slew rate magnetic field gradient coil for neuroimaging
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Joseph Edward Piel, Yihe Hua, Ek Tsoon Tan, Thomas K. F. Foo, Vincent B. Ho, Mark Ernest Vermilyea, Keith Park, and Eric Fiveland
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Adult ,Male ,Chronaxie ,Diffusion ,media_common.quotation_subject ,Neuroimaging ,Stimulation ,Slew rate ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,Peripheral Nervous System ,Image Processing, Computer-Assisted ,Humans ,Contrast (vision) ,Whole Body Imaging ,Radiology, Nuclear Medicine and imaging ,Peripheral Nerves ,media_common ,Physics ,Phantoms, Imaging ,Brain ,Reproducibility of Results ,Equipment Design ,Middle Aged ,Magnetic Resonance Imaging ,Electric Stimulation ,Transverse plane ,Magnetic Fields ,Amplitude ,Female ,Algorithms ,030217 neurology & neurosurgery ,Radiofrequency coil - Abstract
Purpose To establish peripheral nerve stimulation (PNS) thresholds for an ultra-high performance magnetic field gradient subsystem (simultaneous 200-mT/m gradient amplitude and 500-T/m/s gradient slew rate; 1 MVA per axis [MAGNUS]) designed for neuroimaging with asymmetric transverse gradients and 42-cm inner diameter, and to determine PNS threshold dependencies on gender, age, patient positioning within the gradient subsystem, and anatomical landmarks. Methods The MAGNUS head gradient was installed in a whole-body 3T scanner with a custom 16-rung bird-cage transmit/receive RF coil compatible with phased-array receiver brain coils. Twenty adult subjects (10 male, mean ± SD age = 40.4 ± 11.1 years) underwent the imaging and PNS study. The tests were repeated by displacing subject positions by 2-4 cm in the superior-inferior and anterior-posterior directions. Results The x-axis (left-right) yielded mostly facial stimulation, with mean ΔGmin = 111 ± 6 mT/m, chronaxie = 766 ± 76 µsec. The z-axis (superior-inferior) yielded mostly chest/shoulder stimulation (123 ± 7 mT/m, 620 ± 62 µsec). Y-axis (anterior-posterior) stimulation was negligible. X-axis and z-axis thresholds tended to increase with age, and there was negligible dependency with gender. Translation in the inferior and posterior directions tended to increase the x-axis and z-axis thresholds, respectively. Electric field simulations showed good agreement with the PNS results. Imaging at MAGNUS gradient performance with increased PNS threshold provided a 35% reduction in noise-to-diffusion contrast as compared with whole-body performance (80 mT/m gradient amplitude, 200 T/m/sec gradient slew rate). Conclusion The PNS threshold of MAGNUS is significantly higher than that for whole-body gradients, which allows for diffusion gradients with short rise times (under 1 msec), important for interrogating brain microstructure length scales.
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- 2019
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11. PNS Analysis on Folded and Non-folded Gradient Coil Designs with a Coupled EM-Neurodynamic Simulation Method
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Desmond T.B. Yeo, Yihe Hua, and Thomas K. F. Foo
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Physics ,Amplitude ,Electromagnetics ,Field (physics) ,Electromagnetic coil ,Electric field ,Encoding (memory) ,Work (physics) ,Slew rate ,Topology - Abstract
The gradient coil (GC) is an essential component in MRI scanners as it provides linear Bz fields for spatial encoding. In advanced neuroimaging applications, head-only GCs have significant advantages over whole-body GCs. This is because the smaller GC can achieve higher gradient amplitude (Gmax) and higher slew rate (SR) more efficiently and usually also has a higher peripheral nerve stimulation (PNS) threshold. With the advent of high levels of Gmax and SR to significantly improve the quality and geometric fidelity of structural and functional brain imaging, methodologies for PNS prediction and assessment become more critical for patient safety. In this work, we first designed one non-folded and one folded X-coil with the target field method [1] , then we utilized a coupled EM-neurodynamic simulation method to compare the PNS response of these two coils and further proposed a design with lower PNS risk by balancing electric field intensities in different part of the body.
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- 2021
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12. SNORE: spike noise removal and detection.
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Thomas K. F. Foo, Nancy S. Grigsby, James D. Mitchell, and Beth E. Slayman
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- 1994
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13. PNS Estimation of a High Performance Head Gradient Coil by a Coupled Electromagnetic Neurodynamic Simulation Method
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Thomas K. F. Foo, Desmond T.B. Yeo, and Yihe Hua
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Physics ,Electromagnetics ,Acoustics ,020208 electrical & electronic engineering ,Peripheral nerve stimulation ,020206 networking & telecommunications ,Slew rate ,02 engineering and technology ,Human-body model ,Amplitude ,Electromagnetic coil ,0202 electrical engineering, electronic engineering, information engineering ,Trajectory ,Head (vessel) - Abstract
With the recent advancement in high-performance head gradient coil technology for magnetic resonance imaging, the assessment of peripheral nerve stimulation (PNS) has become increasingly important. In this paper we employed a coupled electromagnetic neurodynamic simulation to estimate the PNS level in a human body model for a high gradient amplitude and high slew rate head gradient coil. The results show strong correlation between simulations and measurements.
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- 2021
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14. Computational Modeling of Carotid Bruits
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Xuefeng Zhang, J. Kevin DeMarco, Charles Erklin Seeley, Thomas K. F. Foo, Nikolai N. Pastouchenko, Ivan Malcevic, and Prem Venugopal
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Quantitative Biology::Tissues and Organs ,Carotid arteries ,Physics::Medical Physics ,0206 medical engineering ,02 engineering and technology ,Constriction, Pathologic ,030218 nuclear medicine & medical imaging ,Constriction ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Physics ,Hemodynamics ,Mechanics ,Wave equation ,medicine.disease ,020601 biomedical engineering ,Intensity (physics) ,Vibration ,Stenosis ,Carotid Arteries ,Sound ,Carotid bruit ,Auscultation ,Compressibility ,medicine.symptom - Abstract
The sound generated by diseased carotid arteries was investigated through computational means using three-dimensional, idealized, stenosed carotid bifurcation models. Stenosis levels of 50% and 70% with axi-symmetric and asymmetric stenosis shapes were considered. The hemodynamic flow field was obtained by solving the incompressible, Navier-Stokes equations. The resulting pressure fluctuations at the vessel walls were then used as input for a linearized wave equation for the propagation of vibrations through the modeled surrounding tissue. As observed in prior studies, the sound spectra obtained at the tissue surface indicate a ‘break frequency’, i.e. a frequency beyond which there is a drop-off in sound spectra intensity. This frequency was found to scale with stenosis diameter and average velocity at the stenosis throat, provided the stenosis shape remained the same. This has important implications on past attempts to estimate stenosis diameter from the break frequency.
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- 2020
15. Patient-specific deep deformation models (PsDDM) to register planning and interventional ultrasound volumes in image fusion-guided interventions
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Thomas K. F. Foo, Bryan Bednarz, David M. Mills, Clare M. Tempany, Soumya Ghose, Sydney A. Jupitz, Shourya Sarcar, Jhimli Mitra, Desmond T.B. Yeo, Michael MacDonald, and L. Scott Smith
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Interventional Ultrasound ,Image fusion ,medicine.medical_specialty ,Register (music) ,Computer science ,Psychological intervention ,medicine ,Medical physics ,Patient specific ,Deformation (meteorology) - Published
- 2020
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16. Automatic brain structure-guided registration of pre and intra-operative 3D ultrasound for neurosurgery
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Soumya Ghose, Sarah F. Frisken, Desmond T.B. Yeo, Jhimli Mitra, Alexandra J. Golby, L. Scott Smith, Thomas K. F. Foo, and David M. Mills
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medicine.medical_specialty ,Intra operative ,medicine.diagnostic_test ,Computer science ,business.industry ,Tumor resection ,Ultrasound ,Intraoperative ultrasound ,medicine ,3D ultrasound ,Neurosurgery ,Affine transformation ,business ,Ultrasound image ,Biomedical engineering - Abstract
Image guidance aids neurosurgeons in making critical clinical decisions of safe maximal resection of diseased tissue. The brain however undergoes significant non-linear structural deformation on account of dura opening and tumor resection. Deformable registration of pre-operative ultrasound to intra-operative ultrasound may be used in mapping of pre-operative planning MRI to intraoperative ultrasound. Such mapping may aid in determining tumor resection margins during surgery. In this work, brain structures visible in pre- and intra-operative 3D ultrasound were used for automatic deformable registration. A Gaussian mixture model was used to automatically segment structures of interest in pre- and intra-operative ultrasound and patch-based normalized cross-correlation was used to establish correspondences between segmented structures. An affine registration based on correspondences was followed by B-spline based deformable registration to register pre- and intra-operative ultrasound. Manually labelled landmarks in pre- and intra-operative ultrasound were used to quantify the mean target registration error. We achieve a mean target registration error of 1.43±0.8 mm when validated with 17 pre- and intra-operative ultrasound image volumes of a public dataset.
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- 2020
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17. Referenced MR thermometry using three-echo phase-based fat water separation method
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Luca Marinelli, Desmond T.B. Yeo, W. Thomas Dixon, Thomas K. F. Foo, and Lorne W. Hofstetter
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Ethylene Glycol ,Materials science ,Mr thermometry ,Biomedical Engineering ,Biophysics ,Analytical chemistry ,Thermometry ,Iterative reconstruction ,Small-angle approximation ,030218 nuclear medicine & medical imaging ,Fats ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Phase (matter) ,Image Processing, Computer-Assisted ,Computer Simulation ,Radiology, Nuclear Medicine and imaging ,Phantoms, Imaging ,Echo (computing) ,Water ,Atmospheric temperature range ,Magnetic Resonance Imaging ,chemistry ,Separation method ,Dairy Products ,Ethylene glycol ,030217 neurology & neurosurgery - Abstract
A three-point image reconstruction method for internally referenced MR thermometry was developed. The technique exploits the fact that temperature-induced changes in the water resonance frequency are small relative to the chemical shift difference between water and fat signals. This property enabled the use of small angle approximations to derive an analytic phase-based fat-water separation method for MR thermometry. Ethylene glycol and cream cool-down experiments were performed to validate measurement technique. Over a cool-down temperature range of 20 °C, maximum deviation between probe and MR measurement (averaged over 1.3 cm3 region surrounding probe) was 0.6 °C and 1.1 °C for ethylene glycol and cream samples, respectively.
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- 2018
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18. Lightweight, compact, and high‐performance 3 <scp>T MR</scp> system for imaging the brain and extremities
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Yunhong Shu, Matthew A. Frick, Keith Park, Gene Conte, Thomas K. F. Foo, Paul M. Thompson, Christopher J. Hardy, John F. Schenck, Dominic Graziani, Ye Bai, Paul T. Weavers, Ek Tsoon Tan, Justin Ricci, John Huston, Seung-Kyun Lee, Norbert G. Campeau, Evangelos Trifon Laskaris, Erin M. Gray, Christopher Van Epps, Kagan Alexander, David Stanley, Minfeng Xu, Joshua D. Trzasko, Christopher D. Immer, Jean Baptise Mathieu, Matt A. Bernstein, Wolfgang Stautner, Yihe Hua, Eric Fiveland, Joseph Edward Piel, and Mark Ernest Vermilyea
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Male ,Scanner ,Computer science ,Image quality ,Slew rate ,Inversion recovery ,Signal-To-Noise Ratio ,Fluid-attenuated inversion recovery ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Imaging, Three-Dimensional ,0302 clinical medicine ,Neuroimaging ,Humans ,Whole Body Imaging ,Radiology, Nuclear Medicine and imaging ,Phantoms, Imaging ,Brain ,Equipment Design ,Magnetic Resonance Imaging ,Signal-to-noise ratio (imaging) ,Electromagnetic coil ,Magnets ,Female ,030217 neurology & neurosurgery ,Biomedical engineering - Abstract
Purpose To build and evaluate a small-footprint, lightweight, high-performance 3T MRI scanner for advanced brain imaging with image quality that is equal to or better than conventional whole-body clinical 3T MRI scanners, while achieving substantial reductions in installation costs. Methods A conduction-cooled magnet was developed that uses less than 12 liters of liquid helium in a gas-charged sealed system, and standard NbTi wire, and weighs approximately 2000 kg. A 42-cm inner-diameter gradient coil with asymmetric transverse axes was developed to provide patient access for head and extremity exams, while minimizing magnet-gradient interactions that adversely affect image quality. The gradient coil was designed to achieve simultaneous operation of 80-mT/m peak gradient amplitude at a slew rate of 700 T/m/s on each gradient axis using readily available 1-MVA gradient drivers. Results In a comparison of anatomical imaging in 16 patients using T2 -weighted 3D fluid-attenuated inversion recovery (FLAIR) between the compact 3T and whole-body 3T, image quality was assessed as equivalent to or better across several metrics. The ability to fully use a high slew rate of 700 T/m/s simultaneously with 80-mT/m maximum gradient amplitude resulted in improvements in image quality across EPI, DWI, and anatomical imaging of the brain. Conclusions The compact 3T MRI system has been in continuous operation at the Mayo Clinic since March 2016. To date, over 200 patient studies have been completed, including 96 comparison studies with a clinical 3T whole-body MRI. The increased gradient performance has reliably resulted in consistently improved image quality.
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- 2018
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19. A block matching based approach with multiple simultaneous templates for the real-time 2D ultrasound tracking of liver vessels
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Thomas K. F. Foo, Bryan Bednarz, Andrew J. Shepard, and Bo Wang
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Time Factors ,Computer science ,Movement ,Initialization ,Image processing ,Similarity measure ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Image Processing, Computer-Assisted ,Humans ,Computer vision ,Ultrasonography ,Block-matching algorithm ,Block (data storage) ,business.industry ,Frame (networking) ,General Medicine ,Frame rate ,Liver ,Feature (computer vision) ,030220 oncology & carcinogenesis ,Blood Vessels ,Artificial intelligence ,Affine transformation ,business ,Algorithms ,Radiotherapy, Image-Guided ,Reference frame - Abstract
Purpose The implementation of motion management techniques in radiation therapy can aid in mitigating uncertainties and reducing margins. For motion management to be effective, it is necessary to track key structures both accurately and at a real-time speed. Therefore, the focus of this work was to develop a 2D algorithm for the real-time tracking of ultrasound features to aid in radiation therapy motion management. Materials and Methods The developed algorithm utilized a similarity measure-based block matching algorithm incorporating training methods and multiple simultaneous templates. The algorithm is broken down into three primary components, all of which use normalized cross-correlation (NCC) as a similarity metric. First, a global feature shift to account for gross displacements from the previous frame is determined using large block sizes which encompass the entirety of the feature. Second, the most similar reference frame is chosen from a series of training images that are accumulated during the first K frames of tracking to aid in contour consistency and provide a starting point for the localized template initialization. Finally, localized block matching is performed through the simultaneous use of both a training frame and the previous frame. The localized block matching utilizes a series of templates positioned at the boundary points of the training and previous contours. The weighted final boundary points from both the previous and the training frame are ultimately combined and used to determine an affine transformation from the previous frame to the current frame. Results A mean tracking error of 0.72 ± 1.25 mm was observed for 85 point-landmarks across 39 ultrasound sequences relative to manual ground truth annotations. The image processing speed per landmark with the GPU implementation was between 41 and 165 frames per second (fps) during the training set accumulation, and between 73 and 234 fps after training set accumulation. Relative to a comparable multithreaded CPU approach using OpenMP, the GPU implementation resulted in speedups between -30% and 355% during training set accumulation, and between -37% and 639% post-accumulation. Conclusions Initial implementations indicated an accuracy that was comparable to or exceeding those achieved by alternative 2D tracking methods, with a computational speed that is more than sufficient for real-time applications in a radiation therapy environment. While the overall performance reached levels suitable for implementation in radiation therapy, the observed increase in failures for smaller features, as well as the algorithm's inability to be applied to non-convex features warrants additional investigation to address the shortcomings observed. This article is protected by copyright. All rights reserved.
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- 2017
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20. Reduced acoustic noise in diffusion tensor imaging on a compact MRI system
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Matt A. Bernstein, Ek Tsoon Tan, John Huston, Christopher J. Hardy, Arnaud Guidon, Thomas K. F. Foo, Myung-Ho In, and Yunhong Shu
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Physics ,medicine.diagnostic_test ,Magnetic resonance imaging ,Slew rate ,Thermal diffusivity ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Amplitude ,Nuclear magnetic resonance ,Fractional anisotropy ,medicine ,Effective diffusion coefficient ,Radiology, Nuclear Medicine and imaging ,030217 neurology & neurosurgery ,Decibel ,Diffusion MRI - Abstract
Purpose To investigate the feasibility of substantially reducing acoustic noise while performing diffusion tensor imaging (DTI) on a compact 3T (C3T) MRI scanner equipped with a 42-cm inner-diameter asymmetric gradient. Methods A-weighted acoustic measurements were made using 10 mT/m-amplitude sinusoidal waveforms, corresponding to echo-planar imaging (EPI) echo spacing of 0.25 to 5.0 ms, on a conventional, whole-body 3T MRI and on the C3T. Acoustic measurements of DTI with trapezoidal EPI waveforms were then made at peak gradient performance on the C3T (80 mT/m amplitude, 700 T/m/s slew rate) and at derated performance (33 mT/m, 10 to 50 T/m/s) for acoustic noise reduction. DTI was acquired in two different phantoms and in seven human subjects, with and without gradient-derating corresponding to multi- and single-shot acquisitions, respectively. Results Sinusoidal waveforms on the C3T were quieter by 8.5 to 15.6 A-weighted decibels (dBA) on average as compared to the whole-body MRI. The derated multishot DTI acquisition noise level was only 8.7 dBA (at 13 T/m/s slew rate) above ambient, and was quieter than non-derated, single-shot DTI by 22.3 dBA; however, the scan time was almost quadrupled. Although derating resulted in negligible diffusivity differences in the phantoms, small biases in diffusivity measurements were observed in human subjects (apparent diffusion coefficient = +9.3 ± 8.8%, fractional anisotropy = +3.2 ± 11.2%, radial diffusivity = +9.4 ± 16.8%, parallel diffusivity = +10.3 ± 8.4%). Conclusion The feasibility of achieving reduced acoustic noise levels with whole-brain DTI on the C3T MRI was demonstrated. Magn Reson Med 79:2902-2911, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
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21. The effect of concomitant fields in fast spin echo acquisition on asymmetric MRI gradient systems
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Thomas K. F. Foo, Yunhong Shu, Paul T. Weavers, John Huston, Shengzhen Tao, Erin M. Gray, Joshua D. Trzasko, and Matt A. Bernstein
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Chemistry ,Image quality ,Field of view ,Signal ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Compensation (engineering) ,Computational physics ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,Zeroth law of thermodynamics ,law ,Eddy current ,Radiology, Nuclear Medicine and imaging ,Spatial dependence ,030217 neurology & neurosurgery - Abstract
Purpose To investigate the effect of the asymmetric gradient concomitant fields (CF) with zeroth and first-order spatial dependence on fast/turbo spin-echo acquisitions, and to demonstrate the effectiveness of their real-time compensation. Methods After briefly reviewing the CF produced by asymmetric gradients, the effects of the additional zeroth and first-order CFs on these systems are investigated using extended-phase graph simulations. Phantom and in vivo experiments are performed to corroborate the simulation. Experiments are performed before and after the real-time compensations using frequency tracking and gradient pre-emphasis to demonstrate their effectiveness in correcting the additional CFs. The interaction between the CFs and prescan-based correction to compensate for eddy currents is also investigated. Results It is demonstrated that, unlike the second-order CFs on conventional gradients, the additional zeroth/first-order CFs on asymmetric gradients cause substantial signal loss and dark banding in fast spin-echo acquisitions within a typical brain-scan field of view. They can confound the prescan correction for eddy currents and degrade image quality. Performing real-time compensation successfully eliminates the artifacts. Conclusions We demonstrate that the zeroth/first-order CFs specific to asymmetric gradients can cause substantial artifacts, including signal loss and dark bands for brain imaging. These effects can be corrected using real-time compensation. Magn Reson Med, 2017. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
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22. B0 concomitant field compensation for MRI systems employing asymmetric transverse gradient coils
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Yunhong Shu, Matthew A. Frick, Shengzhen Tao, Thomas K. F. Foo, Seung-Kyun Lee, Paul T. Weavers, Joshua D. Trzasko, Louis M. Frigo, and Matt A. Bernstein
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Field (physics) ,business.industry ,Phase (waves) ,Signal ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,Amplitude ,Optics ,Radiology, Nuclear Medicine and imaging ,Center frequency ,Spatial dependence ,Ghosting ,business ,030217 neurology & neurosurgery ,Spiral ,Mathematics - Abstract
Purpose Imaging gradients result in the generation of concomitant fields, or Maxwell fields, which are of increasing importance at higher gradient amplitudes. These time-varying fields cause additional phase accumulation, which must be compensated for to avoid image artifacts. In the case of gradient systems employing symmetric design, the concomitant fields are well described with second-order spatial variation. Gradient systems employing asymmetric design additionally generate concomitant fields with global (zeroth-order or B0) and linear (first-order) spatial dependence. Methods This work demonstrates a general solution to eliminate the zeroth-order concomitant field by applying the correct B0 frequency shift in real time to counteract the concomitant fields. Results are demonstrated for phase contrast, spiral, echo-planar imaging (EPI), and fast spin-echo imaging. Results A global phase offset is reduced in the phase-contrast exam, and blurring is virtually eliminated in spiral images. The bulk image shift in the phase-encode direction is compensated for in EPI, whereas signal loss, ghosting, and blurring are corrected in the fast-spin echo images. Conclusion A user-transparent method to compensate the zeroth-order concomitant field term by center frequency shifting is proposed and implemented. This solution allows all the existing pulse sequences—both product and research—to be retained without any modifications. Magn Reson Med, 2017. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
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23. A Magnetic Resonance Compatible E4D Ultrasound Probe for Motion Management of Radiation Therapy
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Aqsa Patel, Chan Pong Kwok, Scott Smith, Thomas K. F. Foo, David Shoudy, Timothy Fiorillo, Bryan Bednarz, David M. Mills, James Sabatini, Warren Lee, Heather Chan, and Eric Fiveland
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Beamforming ,Materials science ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Ultrasound ,Magnetic resonance imaging ,Article ,Linear particle accelerator ,030218 nuclear medicine & medical imaging ,law.invention ,Radiation therapy ,03 medical and health sciences ,0302 clinical medicine ,Optics ,Nuclear magnetic resonance ,Transducer ,law ,030220 oncology & carcinogenesis ,Shielded cable ,medicine ,Center frequency ,business - Abstract
We developed a magnetic resonance compatible real-time, three-dimensional imaging ultrasound probe for motion management of radiation therapy for liver cancer. The probe contains an 18,000-element, 46.8 mm × 21.5 mm matrix array constructed from three tiled transducer modules with integrated beamforming ASICs. The center frequency and −6 dB fractional bandwidth of the probe was 3.6 MHz and 85 percent respectively. Ferromagnetic materials in the acoustic stack, flex interconnect and electronics boards were greatly minimized for magnetic resonance compatibility. The probe and cable were shielded to minimize the impact of radiofrequency noise on both the ultrasound and magnetic resonance images. The probe’s low-profile, side-viewing design allows it to be strapped to a patient so that images may be acquired hands-free. We present simultaneously acquired ultrasound and 3 Tesla magnetic resonance images with minimal artifacts in both images.
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- 2019
24. Highly efficient head-only magnetic field insert gradient coil for achieving simultaneous high gradient amplitude and slew rate at 3.0T (MAGNUS) for brain microstructure imaging
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Heechin Chae, Franklyn Snell, Aaron Dean, Maureen N. Hood, Ye Bai, Desmond T.B. Yeo, Vasil Christina, Joseph Edward Piel, Kagan Alexander, Eric Fiveland, Ek Tsoon Tan, Thomas K. F. Foo, Mark Ernest Vermilyea, Vincent B. Ho, Paul Shadforth Thompson, Justin Ricci, Robert Y. Shih, Yihe Hua, Keith Park, Matthew Tarasek, Dominic Graziani, J. Kevin DeMarco, Gene Conte, and David W. Lee
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Materials science ,business.industry ,Diffusion ,Linearity ,Brain ,Slew rate ,Acoustics ,Equipment Design ,Magnetic Resonance Imaging ,030218 nuclear medicine & medical imaging ,Magnetic field ,03 medical and health sciences ,0302 clinical medicine ,Optics ,Magnetic Fields ,Electromagnetic coil ,Electric field ,Magnet ,Humans ,Radiology, Nuclear Medicine and imaging ,business ,Head ,030217 neurology & neurosurgery ,Radiofrequency coil - Abstract
Purpose To develop a highly efficient magnetic field gradient coil for head imaging that achieves 200 mT/m and 500 T/m/s on each axis using a standard 1 MVA gradient driver in clinical whole-body 3.0T MR magnet. Methods A 42-cm inner diameter head-gradient used the available 89- to 91-cm warm bore space in a whole-body 3.0T magnet by increasing the radial separation between the primary and the shield coil windings to 18.6 cm. This required the removal of the standard whole-body gradient and radiofrequency coils. To achieve a coil efficiency ~4× that of whole-body gradients, a double-layer primary coil design with asymmetric x-y axes, and symmetric z-axis was used. The use of all-hollow conductor with direct fluid cooling of the gradient coil enabled ≥50 kW of total heat dissipation. Results This design achieved a coil efficiency of 0.32 mT/m/A, allowing 200 mT/m and 500 T/m/s for a 620 A/1500 V driver. The gradient coil yielded substantially reduced echo spacing, and minimum repetition time and echo time. In high b = 10,000 s/mm2 diffusion, echo time (TE) 50% reduction compared with whole-body gradients). The gradient coil passed the American College of Radiology tests for gradient linearity and distortion, and met acoustic requirements for nonsignificant risk operation. Conclusions Ultra-high gradient coil performance was achieved for head imaging without substantial increases in gradient driver power in a whole-body 3.0T magnet after removing the standard gradient coil. As such, any clinical whole-body 3.0T MR system could be upgraded with 3-4× improvement in gradient performance for brain imaging.
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- 2019
25. High slew-rate head-only gradient for improving distortion in echo planar imaging: Preliminary experience
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Joseph Edward Piel, Paul T. Weavers, Thomas K. F. Foo, Ek Tsoon Tan, Seung-Kyun Lee, John Huston, Yunhong Shu, Dominic Graziani, and Matt A. Bernstein
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Materials science ,medicine.diagnostic_test ,Echo (computing) ,Linearity ,Slew rate ,Magnetic resonance imaging ,Signal ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Electromagnetic coil ,Distortion ,medicine ,Radiology, Nuclear Medicine and imaging ,Image resolution ,030217 neurology & neurosurgery ,Biomedical engineering - Abstract
Purpose To investigate the effects on echo planar imaging (EPI) distortion of using high gradient slew rates (SR) of up to 700 T/m/s for in vivo human brain imaging, with a dedicated, head-only gradient coil. Materials and Methods Simulation studies were first performed to determine the expected echo spacing and distortion reduction in EPI. A head gradient of 42-cm inner diameter and with asymmetric transverse coils was then installed in a whole-body, conventional 3T magnetic resonance imaging (MRI) system. Human subject imaging was performed on five subjects to determine the effects of EPI on echo spacing and signal dropout at various gradient slew rates. The feasibility of whole-brain imaging at 1.5 mm-isotropic spatial resolution was demonstrated with gradient-echo and spin-echo diffusion-weighted EPI. Results As compared to a whole-body gradient coil, the EPI echo spacing in the head-only gradient coil was reduced by 48%. Simulation and in vivo results, respectively, showed up to 25–26% and 19% improvement in signal dropout. Whole-brain imaging with EPI at 1.5 mm spatial resolution provided good whole-brain coverage, spatial linearity, and low spatial distortion effects. Conclusion Our results of human brain imaging with EPI using the compact head gradient coil at slew rates higher than in conventional whole-body MR systems demonstrate substantially improved image distortion, and point to a potential for benefits to non-EPI pulse sequences. J. Magn. Reson. Imaging 2016;44:653–664.
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- 2016
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26. Technical Note: Compact three‐tesla magnetic resonance imager with high‐performance gradients passes ACR image quality and acoustic noise tests
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John Huston, Yunhong Shu, Dominic Graziani, Seung-Kyun Lee, Matt A. Bernstein, Paul T. Weavers, Thomas K. F. Foo, Joshua D. Trzasko, Jean-Baptiste Mathieu, and Shengzhen Tao
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Quality Control ,Risk ,Physics ,Image quality ,Aperture ,Acoustics ,Slew rate ,General Medicine ,Signal-To-Noise Ratio ,Magnetic Resonance Imaging ,Imaging phantom ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Signal-to-noise ratio ,Nuclear magnetic resonance ,DIAGNOSTIC IMAGING (IONIZING AND NON-IONIZING) ,Electromagnetic coil ,Humans ,Radiology ,Fiducial marker ,Image resolution ,Societies, Medical ,030217 neurology & neurosurgery - Abstract
Purpose: A compact, three-tesla magnetic resonance imaging(MRI) system has been developed. It features a 37 cm patient aperture, allowing the use of commercial receiver coils. Its design allows simultaneously for gradient amplitudes of 85 millitesla per meter (mT/m) sustained and 700 tesla per meter per second (T/m/s) slew rates. The size of the gradient system allows for these simultaneous performance targets to be achieved with little or no peripheral nerve stimulation, but also raises a concern about the geometric distortion as much of the imaging will be done near the system’s maximum 26 cm field-of-view. Additionally, the fast switching capability raises acoustic noise concerns. This work evaluates the system for both the American College of Radiology’s (ACR) MRIimage quality protocol and the Food and Drug Administration’s (FDA) nonsignificant risk (NSR) acoustic noise limits for MR. Passing these two tests is critical for clinical acceptance. Methods: In this work, the gradient system was operated at the maximum amplitude and slew rate of 80 mT/m and 500 T/m/s, respectively. The geometric distortion correction was accomplished by iteratively determining up to the tenth order spherical harmonic coefficients using a fiducial phantom and position-tracking software, with seventh order correction utilized in the ACR test. Acoustic noise was measured with several standard clinical pulse sequences. Results: The system passes all the ACR image quality tests. The acoustic noise as measured when the gradient coil was inserted into a whole-body MRI system conforms to the FDA NSR limits. Conclusions: The compact system simultaneously allows for high gradient amplitude and high slew rate. Geometric distortion concerns have been mitigated by extending the spherical harmonic correction to higher orders. Acoustic noise is within the FDA limits.
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- 2016
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27. Peripheral nerve stimulation characteristics of an asymmetric head-only gradient coil compatible with a high-channel-count receiver array
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Bruce Campbell Amm, Jean-Baptiste Mathieu, John Huston, Matt A. Bernstein, Joseph Edward Piel, Ek Tsoon Tan, Eric Fiveland, Christopher J. Hardy, Thomas K. F. Foo, Eric George Budesheim, Yunhong Shu, Dominic Graziani, John F. Schenck, and Seung-Kyun Lee
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Physics ,medicine.diagnostic_test ,Channel (digital image) ,Asymmetric head ,Peripheral nerve stimulation ,Magnetic resonance imaging ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Transverse plane ,0302 clinical medicine ,Nuclear magnetic resonance ,nervous system ,Electromagnetic coil ,medicine ,Inner diameter ,Radiology, Nuclear Medicine and imaging ,Whole body ,030217 neurology & neurosurgery - Abstract
PURPOSE To characterize peripheral nerve stimulation (PNS) of an asymmetric head-only gradient coil that is compatible with a commercial high-channel-count receive-only array. METHODS Two prototypes of an asymmetric head-only gradient coil set with a 42-cm inner diameter were constructed for brain imaging at 3T with maximum performance specifications of up to 85 mT/m and 708 T/m/s. Tests were performed in 24 volunteers to measure PNS thresholds with the transverse (x = left-right; y = anterior-posterior [A/P]) gradient coils of both prototypes. Fourteen of these 24 volunteers were also tested for the z-gradient PNS in the second prototype and were scanned with high-slew-rate echo planar imaging (EPI) immediately after the PNS tests. RESULTS For both prototypes, the y-gradient PNS threshold was markedly higher than the x-gradient threshold. The z-gradient threshold was intermediate between those for the x- and y-coils. Of the 24 volunteers, only two experienced y-gradient PNS at 80 mT/m and 500 T/m/s. All volunteers underwent the EPI scan without PNS when the readout direction was set to A/P. CONCLUSION Measured PNS characteristics of asymmetric head-only gradient coil prototypes indicate that such coils, especially in the A/P direction, can be used for fast EPI readout in high-performance neuroimaging scans with substantially reduced PNS concerns compared with conventional whole body gradient coils. Magn Reson Med 76:1939-1950, 2016. © 2015 International Society for Magnetic Resonance in Medicine.
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- 2015
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28. Inductively coupled wireless RF coil arrays
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Thomas K. F. Foo, Selaka Bandara Bulumulla, Christopher J. Hardy, Eric Fiveland, and Keith Park
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Adult ,Radio Waves ,Acoustics ,Biomedical Engineering ,Biophysics ,Signal-To-Noise Ratio ,Signal ,Nuclear magnetic resonance ,Image Processing, Computer-Assisted ,Humans ,Computer Simulation ,Radiology, Nuclear Medicine and imaging ,Electronic circuit ,Physics ,Phantoms, Imaging ,Blocking (radio) ,Signal Processing, Computer-Assisted ,Equipment Design ,Middle Aged ,Magnetic Resonance Imaging ,Inductive coupling ,Healthy Volunteers ,Coil noise ,Electromagnetic coil ,Wireless Technology ,Coil tap ,Radiofrequency coil - Abstract
As the number of coils increases in multi-channel MRI receiver-coil arrays, RF cables and connectors become increasingly bulky and heavy, degrading patient comfort and slowing workflow. Inductive coupling of signals provides an attractive "wireless" approach, with the potential to reduce coil weight and cost while simplifying patient setup. In this work, multi-channel inductively coupled anterior arrays were developed and characterized for 1.5T imaging. These comprised MR receiver coils inductively (or "wirelessly") linked to secondary or "sniffer" coils whose outputs were transmitted via preamps to the MR system cabinet. The induced currents in the imaging coils were blocked by passive diode circuits during RF transmit. The imaging arrays were totally passive, obviating the need to deliver power to the coils, and providing lightweight, untethered signal reception with easily positioned coils. Single-shot fast spin echo images were acquired from 5 volunteers using a 7-element inductively coupled coil array and a conventionally cabled 7-element coil array of identical geometry, with the inductively-coupled array showing a relative signal-to-noise ratio of 0.86 +/- 0.07. The concept was extended to a larger 9-element coil array to demonstrate the effect of coil element size on signal transfer and RF-transmit blocking.
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- 2015
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29. Reduced acoustic noise in diffusion tensor imaging on a compact MRI system
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Ek T, Tan, Christopher J, Hardy, Yunhong, Shu, Myung-Ho, In, Arnaud, Guidon, John, Huston, Matt A, Bernstein, and Thomas, K F Foo
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Adult ,Male ,Echo-Planar Imaging ,Phantoms, Imaging ,Temperature ,Brain ,Reproducibility of Results ,Acoustics ,Signal-To-Noise Ratio ,Article ,Young Adult ,Diffusion Magnetic Resonance Imaging ,Diffusion Tensor Imaging ,Image Processing, Computer-Assisted ,Anisotropy ,Feasibility Studies ,Humans ,Female ,Noise - Abstract
To investigate the feasibility of substantially reducing acoustic noise while performing diffusion tensor imaging (DTI) on a compact 3T (C3T) MRI scanner equipped with a 42-cm inner-diameter asymmetric gradient.A-weighted acoustic measurements were made using 10 mT/m-amplitude sinusoidal waveforms, corresponding to echo-planar imaging (EPI) echo spacing of 0.25 to 5.0 ms, on a conventional, whole-body 3T MRI and on the C3T. Acoustic measurements of DTI with trapezoidal EPI waveforms were then made at peak gradient performance on the C3T (80 mT/m amplitude, 700 T/m/s slew rate) and at derated performance (33 mT/m, 10 to 50 T/m/s) for acoustic noise reduction. DTI was acquired in two different phantoms and in seven human subjects, with and without gradient-derating corresponding to multi- and single-shot acquisitions, respectively.Sinusoidal waveforms on the C3T were quieter by 8.5 to 15.6 A-weighted decibels (dBA) on average as compared to the whole-body MRI. The derated multishot DTI acquisition noise level was only 8.7 dBA (at 13 T/m/s slew rate) above ambient, and was quieter than non-derated, single-shot DTI by 22.3 dBA; however, the scan time was almost quadrupled. Although derating resulted in negligible diffusivity differences in the phantoms, small biases in diffusivity measurements were observed in human subjects (apparent diffusion coefficient = +9.3 ± 8.8%, fractional anisotropy = +3.2 ± 11.2%, radial diffusivity = +9.4 ± 16.8%, parallel diffusivity = +10.3 ± 8.4%).The feasibility of achieving reduced acoustic noise levels with whole-brain DTI on the C3T MRI was demonstrated. Magn Reson Med 79:2902-2911, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
30. The effect of concomitant fields in fast spin echo acquisition on asymmetric MRI gradient systems
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Shengzhen, Tao, Paul T, Weavers, Joshua D, Trzasko, John, Huston, Yunhong, Shu, Erin M, Gray, Thomas K F, Foo, and Matt A, Bernstein
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Phantoms, Imaging ,Image Processing, Computer-Assisted ,Brain ,Humans ,Computer Simulation ,Artifacts ,Magnetic Resonance Imaging ,Algorithms ,Article - Abstract
To investigate the effect of the asymmetric gradient concomitant fields (CF) with zeroth and first-order spatial dependence on fast/turbo spin-echo acquisitions, and to demonstrate the effectiveness of their real-time compensation.After briefly reviewing the CF produced by asymmetric gradients, the effects of the additional zeroth and first-order CFs on these systems are investigated using extended-phase graph simulations. Phantom and in vivo experiments are performed to corroborate the simulation. Experiments are performed before and after the real-time compensations using frequency tracking and gradient pre-emphasis to demonstrate their effectiveness in correcting the additional CFs. The interaction between the CFs and prescan-based correction to compensate for eddy currents is also investigated.It is demonstrated that, unlike the second-order CFs on conventional gradients, the additional zeroth/first-order CFs on asymmetric gradients cause substantial signal loss and dark banding in fast spin-echo acquisitions within a typical brain-scan field of view. They can confound the prescan correction for eddy currents and degrade image quality. Performing real-time compensation successfully eliminates the artifacts.We demonstrate that the zeroth/first-order CFs specific to asymmetric gradients can cause substantial artifacts, including signal loss and dark bands for brain imaging. These effects can be corrected using real-time compensation. Magn Reson Med 79:1354-1364, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
31. B
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Paul T, Weavers, Shengzhen, Tao, Joshua D, Trzasko, Louis M, Frigo, Yunhong, Shu, Matthew A, Frick, Seung-Kyun, Lee, Thomas K-F, Foo, and Matt A, Bernstein
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Image Processing, Computer-Assisted ,Brain ,Humans ,Signal Processing, Computer-Assisted ,Wrist ,Magnetic Resonance Imaging ,Article - Abstract
Imaging gradients result in the generation of concomitant fields, or Maxwell fields, which are of increasing importance at higher gradient amplitudes. These time-varying fields cause additional phase accumulation, which must be compensated for to avoid image artifacts. In the case of gradient systems employing symmetric design, the concomitant fields are well described with second-order spatial variation. Gradient systems employing asymmetric design additionally generate concomitant fields with global (zeroth-order or BThis work demonstrates a general solution to eliminate the zeroth-order concomitant field by applying the correct BA global phase offset is reduced in the phase-contrast exam, and blurring is virtually eliminated in spiral images. The bulk image shift in the phase-encode direction is compensated for in EPI, whereas signal loss, ghosting, and blurring are corrected in the fast-spin echo images.A user-transparent method to compensate the zeroth-order concomitant field term by center frequency shifting is proposed and implemented. This solution allows all the existing pulse sequences-both product and research-to be retained without any modifications. Magn Reson Med 79:1538-1544, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
32. Fat-referenced MR thermometry in the breast and prostate using IDEAL
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James G. Kempf, Cynthia Elizabeth Landberg Davis, Desmond T.B. Yeo, Thomas K. F. Foo, W. Thomas Dixon, and Lorne W. Hofstetter
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Male ,Accuracy and precision ,Pathology ,medicine.medical_specialty ,Materials science ,Swine ,In Vitro Techniques ,Sensitivity and Specificity ,Signal ,Imaging phantom ,Body Temperature ,In vivo ,Prostate ,medicine ,Animals ,Humans ,Radiology, Nuclear Medicine and imaging ,Observational error ,Reproducibility of Results ,Magnetic Resonance Imaging ,medicine.anatomical_structure ,Adipose Tissue ,Thermography ,Female ,Preclinical imaging ,Ex vivo ,Biomedical engineering - Abstract
Purpose: To demonstrate a three-echo fat-referenced MR thermometry technique that estimates and corrects for time-varying phase disturbances in heterogeneous tissues. Materials and Methods: Fat protons do not exhibit a temperature-dependent frequency shift. Fat-referenced thermometry methods exploit this insensitivity and use the signal from fat to measure and correct for magnetic field disturbances. In this study, we present a fat-referenced method that uses interpolation of the fat signal to correct for phase disturbances in fat free regions. Phantom and ex vivo tissue cool-down experiments were performed to evaluate the accuracy of this method in the absence of motion. Non-heated in vivo imaging of the breast and prostate was performed to demonstrate measurement robustness in the presence of systemic and motion-induced field disturbances. Measurement accuracy of the method was compared to conventional proton resonance frequency shift MR thermometry. Results: In the ex vivo porcine tissue experiment, maximum measurement error of the fat-referenced method was reduced 42% from 3.3 to 1.9°C when compared to conventional MR thermometry. In the breasts, measurement errors were reduced by up to 70% from 6.4 to 1.9°C. Conclusion: Ex vivo and in vivo results show that the proposed method reduces measurement errors in the heterogeneous tissue experiments when compared to conventional MR thermometry. J. Magn. Reson. Imaging 2012;36:722–732. © 2012 Wiley Periodicals, Inc.
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- 2012
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33. Estimating amounts of iron oxide from gradient echo images
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Thomas K. F. Foo, Daniel J. Blezek, Amit Kulkarni, Danielle Lynn Petko, Brian Christopher Bales, Lisa Lowery, W. Thomas Dixon, and Dan E. Meyer
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Phase difference ,Echo-Planar Imaging ,Chemistry ,Iron injection ,Analytical chemistry ,Iron oxide ,Contrast Media ,Reproducibility of Results ,Signal void ,Image Enhancement ,Ferric Compounds ,Sensitivity and Specificity ,Hindlimb ,Rats ,chemistry.chemical_compound ,Nuclear magnetic resonance ,Phase (matter) ,Image Interpretation, Computer-Assisted ,Injection site ,Animals ,Tissue Distribution ,Radiology, Nuclear Medicine and imaging ,Dual echo ,Algorithms ,Gradient echo - Abstract
Rat legs directly injected with superparamagnetic iron oxide (SPIO) were studied by dual-echo, gradient-echo imaging. The amount of iron injected was estimated using a point dipole model for the SPIO injection site. Saturation magnetization of 6:1 PEG/amino modified silane-coated iron oxide particles with 5- to 6-nm core and 20-25 hydrodynamic diameter was approximately 110 emu/g of iron. Estimates of the amount of iron injected made from signal void volumes surrounding SPIO centers yielded erroneous results varying with sample orientation in the scanner and echo time (TE). For example, a 10 microL, 3-microg iron injection produced signal void volumes of 80 and 210 microL at TE of 9.8 and 25 ms, respectively, giving apparent iron contents of 6 +/- 1 and 10 +/- 2 microg respectively. A more effective approach uses the phase difference between two gradient recalled echo images. To estimate iron content, this approach fits the expected (3 cos(2)theta - 1)/(/r/3) spatial phase distribution to the observed phase differences. Extraneous phase effects made fitting phase at a single TE ineffective. With the dual echo method, 18 independent estimates were 2.48 +/- 0.26 microg std, independently of sample orientation. Estimates in empty control regions were -90 and -140 ng. A 1-microg injection indicated 0.5, 1.2, and 1.2 microg.
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- 2009
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34. 128-channel body MRI with a flexible high-density receiver-coil array
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Luca Marinelli, Randy Otto John Giaquinto, Eric Fiveland, Thomas K. F. Foo, Robert David Darrow, Kenneth William Rohling, Daniel J. Blezek, Christopher J. Hardy, and Joseph Edward Piel
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Physics ,Phantoms, Imaging ,Pulse (signal processing) ,Acoustics ,Transducers ,Reproducibility of Results ,Equipment Design ,Image Enhancement ,Residual ,Magnetic Resonance Imaging ,Sensitivity and Specificity ,Imaging phantom ,Equipment Failure Analysis ,Receiver coil ,Reduction (complexity) ,Magnetics ,Acceleration ,Aliasing ,Humans ,Whole Body Imaging ,Radiology, Nuclear Medicine and imaging ,Communication channel - Abstract
Purpose To determine whether the promise of high-density many-coil MRI receiver arrays for enabling highly accelerated parallel imaging can be realized in practice. Materials and Methods A 128-channel body receiver-coil array and custom MRI system were developed. The array comprises two clamshells containing 64 coils each, with the posterior array built to maximize signal-to-noise ratio (SNR) and the anterior array design incorporating considerations of weight and flexibility as well. Phantom imaging and human body imaging were performed using a variety of reduction factors and 2D and 3D pulse sequences. Results The ratio of SNR relative to a 32-element array of similar footprint was 1.03 in the center of an elliptical loading phantom and 1.7 on average in the outer regions. Maximum g-factors dropped from 5.5 (for 32 channels) to 2.0 (for 128 channels) for 4 × 4 acceleration and from 25 to 3.3 for 5 × 5 acceleration. Residual aliasing artifacts for a right/left (R/L) reduction factor of 8 in human body imaging were significantly reduced relative to the 32-channel array. Conclusion MRI with a large number of receiver channels enables significantly higher acceleration factors for parallel imaging and improved SNR, provided losses from the coils and electronics are kept negligible. J. Magn. Reson. Imaging 2008;28:1219–1225. © 2008 Wiley-Liss, Inc.
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- 2008
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35. Electroanatomic Mapping of the Left Ventricle in a Porcine Model of Chronic Myocardial Infarction With Magnetic Resonance–Based Catheter Tracking
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Maggie Fung, Jeremy N. Ruskin, Richard Philip Mallozzi, Christina D. McPherson, Glenn S. Slavin, Jeremy D. Dando, Thomas K. F. Foo, Zachary J. Malchano, Robert David Darrow, Greg Kampa, Andre d'Avila, Vivek Y. Reddy, Ehud J. Schmidt, Charles L. Dumoulin, Renee Guhde, Srinivas Dukkipati, and Godtfred Holmvang
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medicine.medical_specialty ,Substrate mapping ,Swine ,Heart Ventricles ,medicine.medical_treatment ,Myocardial Infarction ,Catheter ablation ,Intracardiac injection ,Catheterization ,Physiology (medical) ,medicine ,Animals ,Fluoroscopy ,Myocardial infarction ,medicine.diagnostic_test ,business.industry ,Lidocaine ,Magnetic resonance imaging ,medicine.disease ,Magnetic Resonance Imaging ,Disease Models, Animal ,Catheter ,medicine.anatomical_structure ,Ventricle ,Catheter Ablation ,Tachycardia, Ventricular ,Radiology ,Electrophysiologic Techniques, Cardiac ,Cardiology and Cardiovascular Medicine ,Nuclear medicine ,business - Abstract
Background— X-ray fluoroscopy constitutes the fundamental imaging modality for catheter visualization during interventional electrophysiology procedures. The minimal tissue discriminative capability of fluoroscopy is mitigated in part by the use of electroanatomic mapping systems and enhanced by the integration of preacquired 3-dimensional imaging of the heart with computed tomographic or magnetic resonance (MR) imaging. A more ideal paradigm might be to use intraprocedural MR imaging to directly image and guide catheter mapping procedures. Methods and Results— An MR imaging–based electroanatomic mapping system was designed to assess the feasibility of navigating catheters to the left ventricle in vivo using MR tracking of microcoils incorporated into the catheters, measuring intracardiac ventricular electrograms, and integrating this information with 3-dimensional MR angiography and myocardial delayed enhancement images to allow ventricular substrate mapping. In all animals (4 normal, and 10 chronically infarcted swine), after transseptal puncture under fluoroscopic guidance, catheters were successfully navigated to the left ventricle with MR tracking (13 to 15 frames per second) by both transseptal and retrograde aortic approaches. Electrogram artifacts related to the MR imaging gradient pulses were successfully removed with analog and digital signal processing. In all animals, it was possible to map the entire left ventricle and to project electrogram voltage amplitude maps to identify the scarred myocardium. Conclusions— It is possible to use MR tracking to navigate catheters to the left ventricle, to measure electrogram activity, and to render accurate 3-dimensional voltage maps in a porcine model of chronic myocardial infarction, completely in the MR imaging environment. Myocardial delayed enhancement guidance provided dense sampling of the proximity of the infarct and accurate localization of complex infarcts.
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- 2008
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36. Arterial Reactivity in Lower Extremities Is Progressively Reduced as Cardiovascular Risk Factors Increase
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Thomas K. F. Foo, Pamela Ouyang, David A. Bluemke, Sandeep N. Gupta, Joao A.C. Lima, Brad C. Astor, and Harry A. Silber
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medicine.medical_specialty ,medicine.diagnostic_test ,Vascular disease ,business.industry ,Cardiovascular risk factors ,Magnetic resonance imaging ,medicine.disease ,Surgery ,Resistance artery ,medicine.anatomical_structure ,Diabetes mellitus ,Internal medicine ,Circulatory system ,medicine ,Cardiology ,Risk factor ,Cardiology and Cardiovascular Medicine ,business ,Artery - Abstract
Objectives Our goal was to investigate whether the association between established cardiovascular risk factors and arterial reactivity differs between the lower and upper extremities. Background Resistance artery reactivity in the arm is associated with cardiovascular risk factors, coronary disease, and events. However, the relationship of lower versus upper extremity vasoreactivity to increasing cardiovascular risk factors has not been determined. Methods We studied 82 subjects in 3 groups: 33 young healthy (YH) (21 to 41 years), 30 older healthy (OH) (>50 years), and 19 older type 2 diabetic subjects (OD). We directly measured systolic shear rate, flow, and radius in brachial and femoral arteries at rest and during post-occlusion hyperemia using magnetic resonance imaging. Results Brachial and femoral systolic shear rate, flow, and radius were similar among the groups at rest. Brachial hyperemic shear rate and hyperemic flow normalized as a function of baseline radius were not statistically different when YH were compared with OH and OH with OD. In contrast, femoral hyperemic shear rate and hyperemic flow normalized to baseline radius were lower in OH than YH (680 ± 236 s−1 vs. 843 ± 157 s−1, p = 0.001, and 0.84 ± 0.25 mm1.27/s vs. 1.01 ± 0.16 mm1.27/s, p = 0.001) and lower in OD than OH (549 ± 183 s−1, p = 0.02, and 0.74 ± 0.19 mm1.27/s, p = 0.046). Conclusions Persons with increasing cardiovascular risk factor burden had progressively reduced arterial reactivity in lower but not upper extremities. This may help to explain why atherosclerosis usually develops more severely in legs than in arms, and suggests that legs may be more sensitive than arms for assessing early global atherosclerotic risk.
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- 2007
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37. Simultaneous myocardial and fat suppression in magnetic resonance myocardial delayed enhancement imaging
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Thomas K. F. Foo, Glenn S. Slavin, Vincent B. Ho, David A. Bluemke, Marcela Montequin, and Maureen N. Hood
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Time Factors ,Materials science ,Fat suppression ,Contrast Media ,Delayed enhancement ,Cardiovascular System ,Signal ,Magnetics ,Nuclear magnetic resonance ,Image Processing, Computer-Assisted ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Aged ,Models, Statistical ,medicine.diagnostic_test ,Phantoms, Imaging ,business.industry ,Pulse (signal processing) ,Myocardium ,Magnetic resonance imaging ,Pulse sequence ,Middle Aged ,Image Enhancement ,Magnetic Resonance Imaging ,Adipose Tissue ,Female ,Radio frequency ,Nuclear medicine ,business ,Phantom studies - Abstract
Purpose To develop a method for fat suppression in myocardial delayed enhancement (MDE) studies that achieves effective signal intensity reduction in fat but does not perturb myocardial signal suppression. Materials and Methods A new approach to fat suppression that uses a spectrally-selective inversion-recovery (SPEC-IR) tip-up radio frequency (RF) pulse following the conventional nonselective IR RF pulse together with a second SPEC-IR RF pulse is proposed. The tip-up pulse restores the fat longitudinal magnetization after the nonselective IR pulse and allows the fat magnetization to recover more fully toward its equilibrium value, providing for better fat suppression by the second SPEC-IR RF pulse. This new approach was validated in phantom studies and in five patients. Results Effective fat suppression was achieved using the proposed technique with minimal impact on normal myocardial signal suppression. Mean fat suppression achieved using this approach was 67% ± 8%, as measured in the chest wall immediately opposite the heart. Conclusion The results indicate this modular-type approach optimizes fat suppression in myocardial delayed enhancement studies but does not perturb the basic IR pulse sequence or change basic acquisition parameters. J. Magn. Reson. Imaging 2007;26:927–933. © 2007 Wiley-Liss, Inc.
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- 2007
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38. High temporal resolution breathheld 3D FIESTA CINE imaging: Validation of ventricular function in patients with chronic myocardial infarction
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Thomas K. F. Foo, Clerio F. Azevedo, David A. Bluemke, Dan Rettmann, Katherine C. Wu, and Manojkumar Saranathan
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Adult ,Male ,Myocardial Infarction ,Magnetic Resonance Imaging, Cine ,Ventricular Dysfunction, Left ,Image Processing, Computer-Assisted ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,In patient ,cardiovascular diseases ,Chronic myocardial infarction ,Ejection fraction ,Ventricular function ,business.industry ,Steady-state free precession imaging ,Middle Aged ,Cine imaging ,Temporal resolution ,Chronic Disease ,cardiovascular system ,Feasibility Studies ,High temporal resolution ,Female ,business ,Nuclear medicine - Abstract
Purpose To develop a gated single-breathhold, high temporal resolution three-dimensional (3D) CINE imaging technique and to evaluate its accuracy in volumetric and functional quantification in patients with chronic myocardial infarction. Materials and Methods A 3D CINE steady-state free precession (SSFP) pulse sequence was developed incorporating variable temporal sampling of the low and high spatial frequency k-space data to reduce breathhold time and parallel imaging to increase temporal resolution. Reconstruction with retrospective interpolation enabled complete R-R interval coverage. Feasibility was assessed in eight patients with chronic myocardial infarction and ventricular functional values were compared to those of a 2D CINE acquisition. Results There was no significant difference between the 3D CINE and 2D CINE for end-diastolic volume (168 ± 73 vs. 177 ± 59 mL, respectively; P < 0.27), end-systolic volume (81 ± 62 vs. 79 ± 53 mL; P < 0.81), and ejection fraction (EF) measurements (55 ± 14% vs. 58 ± 14%; P < 0.14). The mean difference in EF was less than 2.5%. A wall motion assessment indicated a good agreement, with a weighted kappa value of 0.62. Conclusion High temporal resolution 3D CINE SSFP imaging of the whole heart can be obtained in a single breathhold and yield ventricular function measurements similar to 2D CINE methods. J. Magn. Reson. Imaging 2007;25:1141–1146. © 2007 Wiley-Liss, Inc.
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- 2007
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39. High slew-rate head-only gradient for improving distortion in echo planar imaging: Preliminary experience
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Ek T, Tan, Seung-Kyun, Lee, Paul T, Weavers, Dominic, Graziani, Joseph E, Piel, Yunhong, Shu, John, Huston, Matt A, Bernstein, and Thomas K F, Foo
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Equipment Failure Analysis ,Echo-Planar Imaging ,Image Interpretation, Computer-Assisted ,Transducers ,Brain ,Humans ,Reproducibility of Results ,Pilot Projects ,Equipment Design ,Artifacts ,Image Enhancement ,Sensitivity and Specificity ,Article - Abstract
To investigate the effects on echo planar imaging (EPI) distortion of using high gradient slew rates (SR) of up to 700 T/m/s for in vivo human brain imaging, with a dedicated, head-only gradient coil.Simulation studies were first performed to determine the expected echo spacing and distortion reduction in EPI. A head gradient of 42-cm inner diameter and with asymmetric transverse coils was then installed in a whole-body, conventional 3T magnetic resonance imaging (MRI) system. Human subject imaging was performed on five subjects to determine the effects of EPI on echo spacing and signal dropout at various gradient slew rates. The feasibility of whole-brain imaging at 1.5 mm-isotropic spatial resolution was demonstrated with gradient-echo and spin-echo diffusion-weighted EPI.As compared to a whole-body gradient coil, the EPI echo spacing in the head-only gradient coil was reduced by 48%. Simulation and in vivo results, respectively, showed up to 25-26% and 19% improvement in signal dropout. Whole-brain imaging with EPI at 1.5 mm spatial resolution provided good whole-brain coverage, spatial linearity, and low spatial distortion effects.Our results of human brain imaging with EPI using the compact head gradient coil at slew rates higher than in conventional whole-body MR systems demonstrate substantially improved image distortion, and point to a potential for benefits to non-EPI pulse sequences. J. Magn. Reson. Imaging 2016;44:653-664.
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- 2015
40. Peripheral nerve stimulation characteristics of an asymmetric head-only gradient coil compatible with a high-channel-count receiver array
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Seung-Kyun, Lee, Jean-Baptiste, Mathieu, Dominic, Graziani, Joseph, Piel, Eric, Budesheim, Eric, Fiveland, Christopher J, Hardy, Ek Tsoon, Tan, Bruce, Amm, Thomas K-F, Foo, Matt A, Bernstein, John, Huston, Yunhong, Shu, and John F, Schenck
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Equipment Failure Analysis ,Implantable Neurostimulators ,Phantoms, Imaging ,Brain ,Humans ,Reproducibility of Results ,Electric Stimulation Therapy ,Equipment Design ,Peripheral Nerves ,Magnetic Resonance Imaging ,Sensitivity and Specificity ,Article - Abstract
To characterize peripheral nerve stimulation (PNS) of an asymmetric head-only gradient coil that is compatible with a commercial high-channel-count receive-only array.Two prototypes of an asymmetric head-only gradient coil set with a 42-cm inner diameter were constructed for brain imaging at 3T with maximum performance specifications of up to 85 mT/m and 708 T/m/s. Tests were performed in 24 volunteers to measure PNS thresholds with the transverse (x = left-right; y = anterior-posterior [A/P]) gradient coils of both prototypes. Fourteen of these 24 volunteers were also tested for the z-gradient PNS in the second prototype and were scanned with high-slew-rate echo planar imaging (EPI) immediately after the PNS tests.For both prototypes, the y-gradient PNS threshold was markedly higher than the x-gradient threshold. The z-gradient threshold was intermediate between those for the x- and y-coils. Of the 24 volunteers, only two experienced y-gradient PNS at 80 mT/m and 500 T/m/s. All volunteers underwent the EPI scan without PNS when the readout direction was set to A/P.Measured PNS characteristics of asymmetric head-only gradient coil prototypes indicate that such coils, especially in the A/P direction, can be used for fast EPI readout in high-performance neuroimaging scans with substantially reduced PNS concerns compared with conventional whole body gradient coils. Magn Reson Med 76:1939-1950, 2016. © 2015 International Society for Magnetic Resonance in Medicine.
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- 2015
41. Respiration induced fiducial motion tracking in ultrasound using an extended SFA approach
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Lowell Scott Smith, Kunlin Cao, Kedar Anil Patwardhan, Thomas K. F. Foo, and Bryan Bednarz
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business.industry ,Computer science ,Template matching ,medicine.medical_treatment ,Frame (networking) ,Feature extraction ,Cancer ,medicine.disease ,Tracking (particle physics) ,Radiation therapy ,medicine.anatomical_structure ,Match moving ,Feature (computer vision) ,Margin (machine learning) ,medicine ,Abdomen ,Computer vision ,Artificial intelligence ,Fiducial marker ,business ,Abdominal cancers - Abstract
Radiation therapy (RT) plays an essential role in the management of cancers. The precision of the treatment delivery process in chest and abdominal cancers is often impeded by respiration induced tumor positional variations, which are accounted for by using larger therapeutic margins around the tumor volume leading to sub-optimal treatment deliveries and risk to healthy tissue. Real-time tracking of tumor motion during RT will help reduce unnecessary margin area and benefit cancer patients by allowing the treatment volume to closely match the positional variation of the tumor volume over time. In this work, we propose a fast approach which enables transferring the pre-estimated target (e.g. tumor) motion extracted from ultrasound (US) image sequences in training stage (e.g. before RT) to online data in real-time (e.g. acquired during RT). The method is based on extracting feature points of the target object, exploiting low-dimensional description of the feature motion through slow feature analysis, and finding the most similar image frame from training data for estimating current/online object location. The approach is evaluated on two 2 D + time and one 3 D + time US acquisitions. The locations of six annotated fiducials are used for designing experiments and validating tracking accuracy. The average fiducial distance between expert's annotation and the location extracted from our indexed training frame is 1.9±0.5 mm . Adding a fast template matching procedure within a small search range reduces the distance to 1.4±0.4 mm . The tracking time per frame is on the order of millisecond, which is below the frame acquisition time.
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- 2015
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42. Impact of 'Cine MR Imaging: Potential for the Evaluation of Cardiovascular Function'
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Vincent B. Ho and Thomas K. F. Foo
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Electrocardiography ,Heart Diseases ,business.industry ,Dynamic contrast-enhanced MRI ,Humans ,Magnetic Resonance Imaging, Cine ,Medicine ,Radiology, Nuclear Medicine and imaging ,General Medicine ,Function (mathematics) ,business ,Nuclear medicine - Published
- 2006
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43. Zero filled partial fourier phase contrast MR imaging: In vitro and in vivo assessment
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Dan Rettmann, Khurram Nasir, Thomas K. F. Foo, Yoav Dori, Aylin Tekes, David A. Bluemke, Luciano C. Amado, and Gilberto Szarf
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Adult ,medicine.medical_specialty ,Materials science ,Correlation coefficient ,Partial fourier ,Phase contrast microscopy ,In Vitro Techniques ,law.invention ,Flow phantom ,Renal Artery ,Nuclear magnetic resonance ,In vivo ,law ,Image Processing, Computer-Assisted ,medicine ,Humans ,Popliteal Artery ,Radiology, Nuclear Medicine and imaging ,Fourier Analysis ,medicine.diagnostic_test ,Cardiac cycle ,Phantoms, Imaging ,Magnetic resonance imaging ,Magnetic Resonance Imaging ,Mr imaging ,Regression Analysis ,Radiology ,Blood Flow Velocity - Abstract
Purpose To validate partial Fourier phase contrast magnetic resonance (PC MR) with full number of excitation (NEX) PC MR measurements in vitro and in vivo. Materials and Methods MR flow measurements were performed using a partial Fourier and a full NEX PC MR sequence in a flow phantom and in 10 popliteal and renal arteries of 10 different healthy volunteers. Average velocity, peak velocity, and flow results were calculated and compared with regression analysis. Results Excellent correlations in average velocities (r = 0.99, P < 0.001), peak velocities (r = 0.99, P < 0.001), and flow rates (r = 0.98, P < 0.001) were demonstrated in vitro between the two different acquisitions. For the popliteal arteries there was excellent correlation between peak velocities for both acquisitions (r = 0.98, P < 0.0001); the correlation of average velocity measurements when using all data points in the cardiac cycle for all volunteers was 0.96 (P < 0.001). For the renal arteries the same comparison resulted in a good correlation for average velocity (0.93, P < 0.001) and peak velocity measurements (r = 0.91, P = 0.002), although the correlation coefficient for flow rates was 0.88 (P = 0.004). Blurring of the vessel margins was consistently observed on magnitude images acquired with the partial Fourier method, causing overestimation of the vessel area and some error in the flow measurements. Conclusion Partial Fourier PC MR is able to provide comparable average and peak velocity values when using 1 NEX PC MRI as a reference. J. Magn. Reson. Imaging 2006. © 2005 Wiley-Liss, Inc.
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- 2005
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44. Short breath-hold, volumetric coronary MR angiography employing steady-state free precession in conjunction with parallel imaging
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Matthew Spencer, Thomas K. F. Foo, Anila Lingamneni, Thoralf Niendorf, Harvey E. Cline, Manojkumar Saranathan, Neil M. Rofsky, and Ivan Pedrosa
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Adult ,Male ,business.industry ,Computer science ,Image quality ,Respiration ,Mr angiography ,Steady-state free precession imaging ,Coronary Angiography ,Imaging, Three-Dimensional ,Image Processing, Computer-Assisted ,High spatial resolution ,Humans ,Female ,Radiology, Nuclear Medicine and imaging ,Sensitivity (control systems) ,Parallel imaging ,Steady state free precession ,Nuclear medicine ,business ,Magnetic Resonance Angiography ,Sensitivity encoding - Abstract
An ECG-gated, 3D steady-state free precession (SSFP) technique in conjunction with sensitivity encoding (SENSE)-based parallel imaging was implemented for short breath-hold, volumetric coronary MR angiograpy (CMRA). Two parallel imaging acquisition strategies (employing 1 R-R and 2 R-R intervals, respectively) were developed to achieve 1) very short breath-hold times (12 s for a heart rate of 60 bpm), and 2) small acquisition windows to minimize sensitivity to physiologic motion. Both strategies were examined in CMRA applications over a range of heart rates. A four-point scale blinded reading (with 4 indicating the most desirable features) revealed substantial image quality improvements for the accelerated data as compared to the nonaccelerated approach. The 1 R-R interval scheme yielded an image score of 3.39 +/- 0.60, and was found to be particularly suitable for low heart rates (P = 0.0008). The 2 R-R interval strategy yielded an image score of 3.35 +/- 0.64, and was more appropriate for higher heart rates (P = 0.03). The results demonstrate that 3D SSFP combined with parallel imaging is a versatile method for short breath-hold CMRA while maintaining high spatial resolution. This strategy permits imaging of the major coronary artery distributions in two to three breath-holds using targeted slabs, and offers the potential for single breath-hold, large-volume CMRA.
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- 2005
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45. Enhanced viability imaging: Improved contrast in myocardial delayed enhancement using dual inversion time subtraction
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Thomas K. F. Foo, Sandeep N. Gupta, Steven D. Wolff, and Dara L. Kraitchman
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Gadolinium DTPA ,media_common.quotation_subject ,Myocardial Infarction ,Contrast Media ,Magnetic Resonance Imaging, Cine ,Inversion Time ,Inversion recovery ,Delayed enhancement ,Dogs ,Imaging, Three-Dimensional ,medicine ,Animals ,Contrast (vision) ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Myocardial infarction ,Cardiac imaging ,media_common ,medicine.diagnostic_test ,business.industry ,Subtraction ,Magnetic resonance imaging ,Image Enhancement ,medicine.disease ,Subtraction Technique ,cardiovascular system ,business ,Nuclear medicine - Abstract
In delayed contrast-enhanced MRI for the assessment of myocardial viability, the TI time in a gated inversion-recovery segmented gradient echo sequence is usually selected to null signal from normal myocardium. Although this TI time generates good contrast between the enhancing infarcted tissue and normal myocardium, there is usually less contrast between the infarct and the blood pool. A subtractive technique utilizing two acquisitions at a long and short TI time is proposed to improve the delineation between infarct-blood and infarct-myocardium. The concept was demonstrated in six mongrel dogs with reperfused myocardial infarction. Infarct-normal myocardium contrast (signal difference) using the proposed enhanced viability imaging (ENVI) technique was 142 ± 50% (P < 0.001) that of standard magnitude inversion recovery (IR), while at the same TI time for the primary image, infarct-blood contrast, was 247 ± 136% (P < 0.002) that of magnitude IR. Accounting for increased noise due to the subtraction, signal difference-to-noise ratios (SDNR) did not show a significant change for infarct-myocardium but infarct-blood SDNR for ENVI was 174 ± 105% that of magnitude-IR (P < 0.03). Thus, marked improvement in the delineation of the infarcted zone was noted over a range of TI times. Magn Reson Med 53:1484–1489, 2005. © 2005 Wiley-Liss, Inc.
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- 2005
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46. Three-dimensional magnetic resonance imaging technique for myocardial-delayed hyperenhancement: A comparison with the two-dimensional technique
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E. Kent Yucel, Mark Fruitman, Thomas K. F. Foo, Raymond Y. Kwong, Servet Tatli, H. Glenn Reynolds, and Kelly H. Zou
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Adult ,Gadolinium DTPA ,Male ,Myocardial Infarction ,Contrast Media ,Inversion recovery ,Imaging, Three-Dimensional ,Image Processing, Computer-Assisted ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Myocardial infarction ,Aged ,Observer Variation ,medicine.diagnostic_test ,business.industry ,Delayed hyperenhancement ,Significant difference ,Magnetic resonance imaging ,Middle Aged ,medicine.disease ,Magnetic Resonance Imaging ,Female ,Signal intensity ,business ,Nuclear medicine ,Kappa ,Gradient echo - Abstract
To compare two-dimensional and three-dimensional techniques in the detection of myocardial infarction (MI) and in the grading transmural extent (TE).Twelve patients with clinically proven MI were examined using two-dimensional and three-dimensional techniques with cardiac-gated, breath-hold, T1-weighted gradient echo sequence with an inversion recovery pulse following gadopentetate dimeglumine (Gd-DTPA) at 0.2 mmol/kg. Contrast-to-noise, signal-to-noise, and signal intensity ratios (CNR, SNR, and SIR, respectively) were derived and compared for each technique.From two-dimensional to three-dimensional, statistical significant difference was found in the mean CNR (11.65 vs. 56.59; P = 0.002), SNR (18.03 vs. 76.90; P0.001), and SIR (3.6 vs. 6.36; P = 0.05). Intraobserver agreement (kappa) between two-dimensional and three-dimensional were R1 = 74% and R2 = 90%. Interobserver agreements between the readers were two-dimensional = 77% and three-dimensional = 79%.Mean CNR, SNR, and SIR are significantly increased in the three-dimensional technique compared to the conventional two-dimensional technique.
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- 2004
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47. High-resolution gadolinium-enhanced 3D MRA of the infrapopliteal arteries
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Vincent B. Ho, Peter L. Choyke, Thomas K. F. Foo, Sandra L. Hess, Hani B. Marcos, and Maureen N. Hood
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medicine.diagnostic_test ,business.industry ,Gadolinium ,Biomedical Engineering ,Biophysics ,chemistry.chemical_element ,High resolution ,Magnetic resonance imaging ,eye diseases ,Magnetic resonance angiography ,nervous system diseases ,Peripheral ,chemistry ,cardiovascular system ,medicine ,High spatial resolution ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Bolus (digestion) ,Nuclear medicine ,business ,Image resolution ,circulatory and respiratory physiology - Abstract
Peripheral magnetic resonance angiography (MRA) is growing in use. However, methods of performing peripheral MRA vary widely and continue to be optimized, especially for improvement in illustration of infrapopliteal arteries. The main purpose of this project was to identify imaging factors that can improve arterial visualization in the lower leg using bolus chase peripheral MRA. Eighteen healthy adults were imaged on a 1.5T MR scanner. The calf was imaged using conventional three-station bolus chase three-dimensional (3D) MRA, two dimensional (2D) time-of-flight (TOF) MRA and single-station Gadolinium (Gd)-enhanced 3D MRA. Observer comparisons of vessel visualization, signal to noise ratios (SNR), contrast to noise ratios (CNR) and spatial resolution comparisons were performed. Arterial SNR and CNR were similar for all three techniques. However, arterial visualization was dramatically improved on dedicated, arterial-phase Gd-enhanced 3D MRA compared with the multi-station bolus chase MRA and 2D TOF MRA. This improvement was related to optimization of Gd-enhanced 3D MRA parameters (fast injection rate of 2 mL/sec, high spatial resolution imaging, the use of dedicated phased array coils, elliptical centric k-space sampling and accurate arterial phase timing for image acquisition). The visualization of the infrapopliteal arteries can be substantially improved in bolus chase peripheral MRA if voxel size, contrast delivery, and central k-space data acquisition for arterial enhancement are optimized. Improvements in peripheral MRA should be directed at these parameters.
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- 2002
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48. Cardiac MRI: Recent progress and continued challenges
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Scott D. Flamm, Thomas K. F. Foo, Ernesto Castillo, Vincent B. Ho, and James P. Earls
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medicine.medical_specialty ,Heart Diseases ,Heart disease ,business.industry ,Cardiovascular research ,Heart ,medicine.disease ,Magnetic Resonance Imaging ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Cardiac structure ,Radiology ,Clinical efficacy ,business - Abstract
Cardiac MRI continues to develop and advance. MRI accurately depicts cardiac structure, function, perfusion, and myocardial viability with an overall capacity unmatched by any other single imaging modality. MRI is an accepted and widely utilized tool for cardiovascular research. Its clinical use has been limited, but is increasing because of its proven clinical efficacy, the proliferation of cardiac-capable MRI systems, and the development of improved pulse sequences. The following article reviews the landmark developments in this field, with an emphasis on recent progress in the evaluation of ischemic or acquired heart disease.
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- 2002
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49. MR temperature monitoring for MR-RF hyperthermia — A systems-level approach
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Eric Fiveland, Thomas K. F. Foo, Tomas Drizdal, Margarethus M. Paulides, Desmond T.B. Yeo, and Matthew Tarasek
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Hyperthermia ,Temperature monitoring ,Nuclear magnetic resonance ,Materials science ,medicine.diagnostic_test ,medicine ,Dosimetry ,Magnetic resonance imaging ,Radio frequency ,Biomedical equipment ,medicine.disease ,Image resolution ,Temperature measurement - Published
- 2014
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50. Contrast-Enhanced Magnetic Resonance Angiography: Technical Considerations for Optimized Clinical Implementation
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Thomas K. F. Foo, Hani B. Marcos, Julianna M. Czum, Michael V. Knopp, Vincent B. Ho, and Peter L. Choyke
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medicine.diagnostic_test ,Computer science ,business.industry ,Mr angiography ,Contrast Media ,Gadolinium ,Pulse sequence ,Magnetic resonance imaging ,Image Enhancement ,Mr imaging ,Magnetic resonance angiography ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Nuclear medicine ,business ,Magnetic Resonance Angiography - Abstract
Contrast-enhanced magnetic resonance angiography (CE MR angiography) has benefited from advancements in MR imaging speed, pulse sequence design, and dedicated equipment and algorithms for its performance. These improvements have greatly expanded the number of options available to the operator and enabled the application of CE MR angiography to a broader range of clinical applications. In this article, the various timing options, pulse sequence innovations, and contrast administration concerns related to clinical CE MR angiography are reviewed. Pertinent issues related to multiphase and multistation bolus chase CE MR angiography also will be discussed.
- Published
- 2001
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