267 results on '"Thomas CB"'
Search Results
2. Delayed presentation of lateral femoral circumflex artery injury post cannulated hip screw surgery - a case report
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DAVDA, KINNER, POLLARD, THOMAS CB, and GRAHAM, ALASTAIR J
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- 2009
3. Comparative Study of Bone Cell Culture Methods for Tissue Engineering Applications
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Thomas, CB, primary, Kellam, JF, additional, and Burg, KJL, additional
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- 2004
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4. Endpoint Verification of Bone Demineralization for Tissue Engineering Applications
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Thomas, CB, primary, Jenkins, L, additional, Kellam, JF, additional, and Burg, KJL, additional
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- 2004
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5. Laparoscopic anti-reflux surgery is effective in obese patients with gastro-oesophageal reflux disease
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NG, VIVIEN V, BOOTH, MICHAEL I, STRATFORD, JANE J, JONES, LINDA, SOHANPAL, J, and DEHN, THOMAS CB
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- 2007
6. Joint replacement in the overweight patient
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Dehn, Thomas CB
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- 2007
7. Coffee consumption and the incidence of coronary heart disease.
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LaCroix, AZ, Mead, LA, Liang, KY, Thomas, CB, and Pearson, TA
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Humans ,Coronary Disease ,Angina Pectoris ,Myocardial Infarction ,Hypertension ,Death ,Sudden ,Risk ,Prospective Studies ,Smoking ,Dose-Response Relationship ,Drug ,Coffee ,Adult ,Middle Aged ,Male ,Substance Abuse ,Atherosclerosis ,Cardiovascular ,Clinical Research ,Prevention ,Heart Disease ,Heart Disease - Coronary Heart Disease ,Cancer ,Medical And Health Sciences ,General & Internal Medicine ,Medical and Health Sciences - Abstract
We conducted a prospective investigation of the effect of coffee consumption on coronary heart disease in 1130 male medical students who were followed for 19 to 35 years. Changes in coffee consumption and cigarette smoking during follow-up were examined in relation to the incidence of clinically evident coronary disease in comparisons of three measures of coffee intake--base-line intake, average intake, and most recent intake reported before the manifestation of coronary disease. Clinical evidence of coronary disease included myocardial infarction, angina, and sudden cardiac death. In separate analyses for each measure of coffee intake, the relative risks for men drinking five or more cups of coffee per day, as compared with nondrinkers, were approximately 2.80 for all three measures in the univariate analyses (maximum width of 95 percent confidence intervals, 1.27 to 6.51). After adjustment for age, current smoking, hypertension status, and base-line level of serum cholesterol, the estimated relative risk for men drinking five or more cups of coffee per day (using the most recent coffee intake measure), as compared with those drinking none, was 2.49 (maximum width of 95 percent confidence interval, 1.08 to 5.77). The association between coffee and coronary disease was strongest when the time between the reports of coffee intake and the coronary event was shortest. These findings support an independent, dose-responsive association of coffee consumption with clinically evident coronary heart disease, which is consistent with a twofold to threefold elevation in risk among heavy coffee drinkers.
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- 1986
8. The big blank canvas.
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Lacayo R, Thomas CB, Emery T, McCulley R, and Lennard A
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- 2006
9. How now, mad cow?
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Thomas CB, Dale SS, Dawson P, Frederick J, Healy R, and Isackson N
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- 2004
10. Buzzing about safety: the latest studies say there is no cell-phone risk, but many users are making their own decisions about taking precautions.
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Greenwald J, Ressner J, Sautter U, Thomas CB, and Thompson D
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- 2001
11. Diagnosis and management of femoroacetabular impingement
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Thomas, Geraint ER, primary, Palmer, Antony JR, additional, Andrade, Antonio J, additional, Pollard, Thomas CB, additional, Fary, Camdon, additional, Singh, Parminder J, additional, O’Donnell, John, additional, and Glyn-Jones, Sion, additional
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- 2013
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12. Femoroacetabular impingement and classification of the cam deformity: the reference interval in normal hips
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Pollard, Thomas CB, primary, Villar, Richard N, additional, Norton, Mark R, additional, Fern, E Darren, additional, Williams, Mark R, additional, Simpson, David J, additional, Murray, David W, additional, and Carr, Andrew J, additional
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- 2010
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13. Morbidity and Mortality of End Stage Renal Disease vs. Acute Kidney Injury in Patients with Acute Lung Injury.
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Thomas, CB, primary, Wheeler, AP, additional, Bernard, GR, additional, and Rice, TW, additional
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- 2009
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14. Letters
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Thomas Cb
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medicine.medical_specialty ,Food Animals ,Equine ,Philosophy ,Theriogenology ,medicine ,Animal Science and Zoology ,Small Animals ,Classics - Published
- 2000
15. Wind post-fundoplication: More than just a passing problem?
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Booth, Michael I., primary and Dehn, Thomas Cb, additional
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- 2001
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16. Chern classes and metacyclic p-groups.
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Thomas, CB
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If G is a finite group with classifying space BG and complex representation ring R(G), one defines the topological filtration on R(G) by means of the natural map Ψ: R(G) → KU(BG). [ABSTRACT FROM PUBLISHER]
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- 1971
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17. Tour de testosterone.
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Gregory S, Thomas CB, Masters C, Skani T, Walker J, and Zaldua E
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- 2006
18. Changes in the SIPOS/Si interface induced by annealing at 900°C
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Brunson, KM, primary, Sands, D, additional, Simmons, JG, additional, and Thomas, CB, additional
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- 1988
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19. Dementia of the Alzheimer type: clinical and family study of 22 twin pairs
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Nee, LE, primary, Eldridge, R, additional, Thomas, CB, additional, Katz, D, additional, Thompson, KE, additional, Weingartner, H, additional, Weiss, H, additional, Julian, C, additional, and Cohen, R, additional
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- 1987
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20. OpenHands: An Open-Source Statistical Shape Model of the Finger Bones.
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Munyebvu TA, Metcalf CD, Burson-Thomas CB, Warwick D, Everitt C, King L, Darekar A, Browne M, Heller MOW, and Dickinson AS
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- Humans, Male, Adult, Female, Models, Anatomic, Models, Statistical, Fingers anatomy & histology, Fingers diagnostic imaging, Models, Biological, Tomography, X-Ray Computed
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This paper presents statistical shape models of the four fingers of the hand, with an emphasis on anatomic analysis of the proximal and distal interphalangeal joints. A multi-body statistical shape modelling pipeline was implemented on an exemplar training dataset of computed tomography (CT) scans of 10 right hands (5F:5M, 27-37 years, free from disease or injury) imaged at 0.3 mm resolution, segmented, meshed and aligned. Model generated included pose neutralisation to remove joint angle variation during imaging. Repositioning was successful; no joint flexion variation was observed in the resulting model. The first principal component (PC) of morphological variation represented phalanx size in all fingers. Subsequent PCs showed variation in position along the palmar-dorsal axis, and bone breadth: length ratio. Finally, the models were interrogated to provide gross measures of bone lengths and joint spaces. These models have been published for open use to support wider community efforts in hand biomechanical analysis, providing bony anatomy descriptions whilst preserving the security of the underlying imaging data and privacy of the participants. The model describes a small, homogeneous population, and assumptions cannot be made about how it represents individuals outside the training dataset. However, it supplements anthropometric datasets with additional shape information, and may be useful for investigating factors such as joint morphology and design of hand-interfacing devices and products. The model has been shared as an open-source repository ( https://github.com/abel-research/OpenHands ), and we encourage the community to use and contribute to it., (© 2024. The Author(s).)
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- 2024
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21. Noninvasive Ventilation for Preoxygenation during Emergency Intubation.
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Gibbs KW, Semler MW, Driver BE, Seitz KP, Stempek SB, Taylor C, Resnick-Ault D, White HD, Gandotra S, Doerschug KC, Mohamed A, Prekker ME, Khan A, Gaillard JP, Andrea L, Aggarwal NR, Brainard JC, Barnett LH, Halliday SJ, Blinder V, Dagan A, Whitson MR, Schauer SG, Walker JE Jr, Barker AB, Palakshappa JA, Muhs A, Wozniak JM, Kramer PJ, Withers C, Ghamande SA, Russell DW, Schwartz A, Moskowitz A, Hansen SJ, Allada G, Goranson JK, Fein DG, Sottile PD, Kelly N, Alwood SM, Long MT, Malhotra R, Shapiro NI, Page DB, Long BJ, Thomas CB, Trent SA, Janz DR, Rice TW, Self WH, Bebarta VS, Lloyd BD, Rhoads J, Womack K, Imhoff B, Ginde AA, and Casey JD
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- Adult, Aged, Female, Humans, Male, Middle Aged, Critical Illness therapy, Heart Arrest therapy, Masks, Oxygen administration & dosage, Oxygen blood, Oxygen Saturation, Hypoxia etiology, Hypoxia prevention & control, Intubation, Intratracheal adverse effects, Intubation, Intratracheal methods, Noninvasive Ventilation methods, Oxygen Inhalation Therapy methods
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Background: Among critically ill adults undergoing tracheal intubation, hypoxemia increases the risk of cardiac arrest and death. The effect of preoxygenation with noninvasive ventilation, as compared with preoxygenation with an oxygen mask, on the incidence of hypoxemia during tracheal intubation is uncertain., Methods: In a multicenter, randomized trial conducted at 24 emergency departments and intensive care units in the United States, we randomly assigned critically ill adults (age, ≥18 years) undergoing tracheal intubation to receive preoxygenation with either noninvasive ventilation or an oxygen mask. The primary outcome was hypoxemia during intubation, defined by an oxygen saturation of less than 85% during the interval between induction of anesthesia and 2 minutes after tracheal intubation., Results: Among the 1301 patients enrolled, hypoxemia occurred in 57 of 624 patients (9.1%) in the noninvasive-ventilation group and in 118 of 637 patients (18.5%) in the oxygen-mask group (difference, -9.4 percentage points; 95% confidence interval [CI], -13.2 to -5.6; P<0.001). Cardiac arrest occurred in 1 patient (0.2%) in the noninvasive-ventilation group and in 7 patients (1.1%) in the oxygen-mask group (difference, -0.9 percentage points; 95% CI, -1.8 to -0.1). Aspiration occurred in 6 patients (0.9%) in the noninvasive-ventilation group and in 9 patients (1.4%) in the oxygen-mask group (difference, -0.4 percentage points; 95% CI, -1.6 to 0.7)., Conclusions: Among critically ill adults undergoing tracheal intubation, preoxygenation with noninvasive ventilation resulted in a lower incidence of hypoxemia during intubation than preoxygenation with an oxygen mask. (Funded by the U.S. Department of Defense; PREOXI ClinicalTrials.gov number, NCT05267652.)., (Copyright © 2024 Massachusetts Medical Society.)
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- 2024
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22. Cellular host response sepsis test for risk stratification of patients in the emergency department: A pooled analysis.
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O'Neal HR Jr, Sheybani R, Kraus CK, Self WH, Shah AM, Thomas CB, Tse HTK, and Scoggins R
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Objectives: Sepsis is one of the most common, costly, and misdiagnosed conditions in U.S. emergency departments (EDs). ED providers often treat on nonspecific signs, subjective suspicion, or presumption of infection, resulting in over- and undertreatment. An increased understanding of host response has opened a new direction for sepsis diagnostics. The IntelliSep test is a U.S. Food and Drug Administration-cleared cellular host response diagnostic that could help distinguish sepsis in ED settings. Our objective was to evaluate the potential of the cellular host response test to expedite appropriate care for patients who present with signs of infection., Methods: We performed a pooled analysis of five adult (≥18 years) cohorts enrolled at seven geographically diverse U.S. sites in separate studies. Structured blinded adjudication was used to classify presence or absence of sepsis, and only patients with high confidence in the adjudicated label were included (n = 1002), defined as patients for whom there was consensus in the determination of sepsis per the Sepsis-3 and severe sepsis per the Sepsis-2 definitions between both the independent adjudication panel and the site-level physician., Results: Among patients with signs or suspicion of infection, the test achieved similar or better performance compared to other indicators in identifying patients at high risk for sepsis (specificity > 83%) and significantly superior performance in identifying those at low risk (sensitivity > 92%; 0% sepsis-associated mortality). The test also stratified severity of illness, as shown by 30-day in-hospital mortality (p < 0.001), hospital length of stay (p < 0.01), and use of hospital resources (p < 0.001)., Conclusions: Our data suggest that the cellular host response test provides clinically actionable results for patients at both high and low risk for sepsis and provides a rapid, objective means for risk stratification of patients with signs of infection. If integrated into standard of care, the test may help improve outcomes and reduce unnecessary antibiotic use., (© 2024 Cytovale, Inc. and The Authors. Academic Emergency Medicine published by Wiley Periodicals LLC on behalf of Society for Academic Emergency Medicine.)
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- 2024
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23. Validation of a Novel, Rapid Sepsis Diagnostic for Emergency Department Use.
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O'Neal HR Jr, Sheybani R, Janz DR, Scoggins R, Jagneaux T, Walker JE, Henning DJ, Rosenman E, Mahler SA, Regunath H, Sampson CS, Files DC, Fremont RD, Noto MJ, Schneider EE, Shealey WR, Berlinger MS, Carver TC, Walker MK, Ledeboer NA, Shah AM, Tse HTK, DiCarlo D, Rice TW, and Thomas CB
- Abstract
Objectives: To assess the in vitro IntelliSep test, a microfluidic assay that quantifies the state of immune activation by evaluating the biophysical properties of leukocytes, as a rapid diagnostic for sepsis., Design: Prospective cohort study., Setting: Five emergency departments (EDs) in Louisiana, Missouri, North Carolina, and Washington., Patients: Adult patients presenting to the ED with signs (two of four Systemic Inflammatory Response Syndrome criteria, where one must be temperature or WBC count) or suspicion (provider-ordered culture) of infection., Interventions: All patients underwent testing with the IntelliSep using ethylene diamine tetraacetic acid-anticoagulated whole blood followed by retrospective adjudication for sepsis by sepsis-3 criteria by a blinded panel of physicians., Measurements and Main Results: Of 599 patients enrolled, 572 patients were included in the final analysis. The result of the IntelliSep test is reported as the IntelliSep Index (ISI), ranging from 0.1 to 10.0, divided into three interpretation bands for the risk of sepsis: band 1 (low) to band 3 (high). The median turnaround time for ISI results was 7.2 minutes. The ISI resulted band 1 in 252 (44.1%), band 2 in 160 (28.0%), and band 3 in 160 (28.0%). Sepsis occurred in 26.6% (152 of 572 patients). Sepsis prevalence was 11.1% (95% CI, 7.5-15.7%) in band 1, 28.1% (95% CI, 21.3-35.8%) in band 2, and 49.4% (95% CI, 41.4-57.4%) in band 3. The Positive Percent Agreement of band 1 was 81.6% and the Negative Percent Agreement of band 3 was 80.7%, with an area under the receiver operating characteristic curve of 0.74. Compared with band 1, band 3 correlated with adverse clinical outcomes, including mortality, and resource utilization., Conclusions: Increasing ISI interpretation band is associated with increasing probability of sepsis in patients presenting to the ED with suspected infection., (Copyright © 2024 The Authors. Published by Wolters Kluwer Health, Inc. on behalf of the Society of Critical Care Medicine.)
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- 2024
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24. Costs and Consequences of a Novel Emergency Department Sepsis Diagnostic Test: The IntelliSep Index.
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Hollenbeak CS, Henning DJ, Geeting GK, Ledeboer NA, Faruqi IA, Pierce CG, Thomas CB, and O'Neal HR Jr
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Sepsis causes 270,000 deaths and costs $38 billion annually in the United States. Most cases of sepsis present in the emergency department (ED), where rapid diagnosis remains challenging. The IntelliSep Index (ISI) is a novel diagnostic test that analyzes characteristics of WBC structure and provides a reliable early signal for sepsis. This study performs a cost-consequence analysis of the ISI relative to procalcitonin for early sepsis diagnosis in the ED., Perspective: U.S. healthcare system., Setting: Community hospital ED., Methods: A decision tree analysis was performed comparing ISI with procalcitonin. Model parameters included prevalence of sepsis, sensitivity and specificity of diagnostic tests (both ISI and procalcitonin), costs of hospitalization, and mortality rate stratified by diagnostic test result. Mortality and prevalence of sepsis were estimated from best available literature. Costs were estimated based on an analysis of a large, national discharge dataset, and adjusted to 2018 U.S. dollars. Outcomes included expected costs and survival., Results: Assuming a confirmed sepsis prevalence of 16.9% (adjudicated to Sepsis-3), the ISI strategy had an expected cost per patient of $3,849 and expected survival rate of 95.08%, whereas the procalcitonin strategy had an expected cost of $4,656 per patient and an expected survival of 94.98%. ISI was both less costly and more effective than procalcitonin, primarily because of fewer false-negative results. These results were robust in sensitivity analyses., Conclusions: ISI was both less costly and more effective in preventing mortality than procalcitonin, primarily because of fewer false-negative results. The ISI may provide health systems with a higher-value diagnostic test in ED sepsis evaluation. Additional work is needed to validate these results in clinical practice., (Copyright © 2023 The Authors. Published by Wolters Kluwer Health, Inc. on behalf of the Society of Critical Care Medicine.)
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- 2023
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25. The Reconstruction of Human Fingerprints From High-Resolution Computed Tomography Data: Feasibility Study and Associated Ethical Issues.
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Katsamenis OL, Burson-Thomas CB, Basford PJ, Pickering JB, and Browne M
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- Humans, Feasibility Studies, Tomography, X-Ray Computed methods, Image Processing, Computer-Assisted methods
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- 2022
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26. Neutralizing COVID-19 Convalescent Plasma in Adults Hospitalized With COVID-19: A Blinded, Randomized, Placebo-Controlled Trial.
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Self WH, Wheeler AP, Stewart TG, Schrager H, Mallada J, Thomas CB, Cataldo VD, O'Neal HR Jr, Shapiro NI, Higgins C, Ginde AA, Chauhan L, Johnson NJ, Henning DJ, Jaiswal SJ, Mammen MJ, Harris ES, Pannu SR, Laguio-Vila M, El Atrouni W, de Wit M, Hoda D, Cohn CS, McWilliams C, Shanholtz C, Jones AE, Raval JS, Mucha S, Ipe TS, Qiao X, Schrantz SJ, Shenoy A, Fremont RD, Brady EJ, Carnahan RH, Chappell JD, Crowe JE Jr, Denison MR, Gilchuk P, Stevens LJ, Sutton RE, Thomsen I, Yoder SM, Bistran-Hall AJ, Casey JD, Lindsell CJ, Wang L, Pulley JM, Rhoads JP, Bernard GR, and Rice TW
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- Adult, Humans, SARS-CoV-2, Antibodies, Viral, Hospitalization, Treatment Outcome, COVID-19 Serotherapy, COVID-19 therapy
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Background: Convalescent plasma has been one of the most common treatments for COVID-19, but most clinical trial data to date have not supported its efficacy., Research Question: Is rigorously selected COVID-19 convalescent plasma with neutralizing anti-SARS-CoV-2 antibodies an efficacious treatment for adults hospitalized with COVID-19?, Study Design and Methods: This was a multicenter, blinded, placebo-controlled randomized clinical trial among adults hospitalized with SARS-CoV-2 infection and acute respiratory symptoms for < 14 days. Enrolled patients were randomly assigned to receive one unit of COVID-19 convalescent plasma (n = 487) or placebo (n = 473). The primary outcome was clinical status (disease severity) 14 days following study infusion measured with a seven-category ordinal scale ranging from discharged from the hospital with resumption of normal activities (lowest score) to death (highest score). The primary outcome was analyzed with a multivariable ordinal regression model, with an adjusted odds ratio (aOR) < 1.0 indicating more favorable outcomes with convalescent plasma than with placebo. In secondary analyses, trial participants were stratified according to the presence of endogenous anti-SARS-CoV-2 antibodies ("serostatus") at randomization. The trial included 13 secondary efficacy outcomes, including 28-day mortality., Results: Among 974 randomized patients, 960 were included in the primary analysis. Clinical status on the ordinal outcome scale at 14 days did not differ between the convalescent plasma and placebo groups in the overall population (aOR, 1.04; one-seventh support interval [1/7 SI], 0.82-1.33), in patients without endogenous antibodies (aOR, 1.15; 1/7 SI, 0.74-1.80), or in patients with endogenous antibodies (aOR, 0.96; 1/7 SI, 0.72-1.30). None of the 13 secondary efficacy outcomes were different between groups. At 28 days, 89 of 482 (18.5%) patients in the convalescent plasma group and 80 of 465 (17.2%) patients in the placebo group had died (aOR, 1.04; 1/7 SI, 0.69-1.58)., Interpretation: Among adults hospitalized with COVID-19, including those seronegative for anti-SARS-CoV-2 antibodies, treatment with convalescent plasma did not improve clinical outcomes., Clinical Trial Registration: ClinicalTrials.gov; No.: NCT04362176; URL: www., Clinicaltrials: gov., (Copyright © 2022 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.)
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- 2022
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27. Quantifying Joint Congruence With an Elastic Foundation.
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Burson-Thomas CB, Dickinson AS, and Browne M
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- Biomechanical Phenomena, Computer Simulation, Humans, Pressure, Bone and Bones, Thumb
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The level of congruence between the articulating surfaces of a diarthrodial joint can vary substantially between individuals. Quantifying joint congruence using the most widespread metric, the "congruence index," is not straightforward: the areas of the segmented bone that constitute the articular surfaces require accurate identification, their shape must be carefully described with appropriate functions, and the relative orientation of the surfaces measured precisely. In this work, we propose a new method of measuring joint congruence, which does not require these steps. First, a finite element (FE) simulation of an elastic layer compressed between each set of segmented bones is performed. These are then interpreted using the elastic foundation model, enabling an equivalent, but simpler, contact geometry to be identified. From this, the equivalent radius (quantification of joint congruence) is found. This defines the radius of a sphere contacting plane (or "ball on flat") that produces an equivalent contact to that in each joint. The minimal joint space width (in this joint position) can also be estimated from the FE simulations. The new method has been applied to ten healthy instances of the thumb metacarpophalangeal (MCP) joint. The ten thumb MCPs had similar levels and variability of congruence as the other diarthrodial joints that have been characterized previously. This new methodology enables efficient quantification of joint congruence and minimal joint space width directly from CT- or MRI-derived bone geometry in any relative orientation. It lends itself to large data sets and coupling with kinematic models., (Copyright © 2022 by ASME.)
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- 2022
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28. Retrospective identification of infection in the emergency department: A significant challenge in sepsis clinical trials.
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O'Neal CS, Hamer D, Musso MW, Caffery TS, Walker MK, Lavie KW, Berlinger MS, Thomas CB, Alwood SM, Jagneaux T, Sanchez MA, and O'Neal HR
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- Clinical Trials as Topic, Humans, Prospective Studies, Retrospective Studies, Emergency Service, Hospital, Sepsis diagnosis
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Background: This study examined three methods for retrospectively identifying infection in emergency department (ED) patients: modified objective definitions of infection (MODI) from the CDC/NHSN, physician adjudication determination of infection, and ED treating physician behavior., Methods: This study used a subset of data from a prospective sepsis trial. We used Fleiss's Kappa to compare agreement between two physicians retrospectively adjudicating infection based on the patient's medical record, modified infection definition from the CDC/NHSN, and ED treating physician behavior., Results: Overall, there was similar agreement between physician adjudication of infection and MODI criteria (Kappa=0.59) compared to having two physicians independently identify infection through retrospective chart review (Kappa=0.58). ED treating physician behavior was a poorer proxy for infection when compared to the MODI criteria (0.41) and physician adjudication (Kappa = 0.50)., Conclusions: Retrospective identification of infection poses a significant challenge in sepsis clinical trials. Using modified definitions of infection provides a standardized, less time consuming, and equally effective means of identifying infection compared to having multiple physicians adjudicate a patient's chart., Competing Interests: Declaration of Competing Interest The authors have no conflicts of interest to declare., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2022
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29. Assessment of a cellular host response test to risk-stratify suspected COVID-19 patients in the Emergency Department setting.
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O'Neal HR Jr, Sheybani R, Caffery TS, Hamer D, Laperouse LM Jr, Musso MW, O'Neal CS, Tse HTK, Shah AM, and Thomas CB
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- Aged, COVID-19 immunology, COVID-19 mortality, Emergency Service, Hospital, Female, Humans, Immunity, Cellular, Male, Middle Aged, Mortality, Prospective Studies, Respiratory Tract Infections immunology, Respiratory Tract Infections mortality, COVID-19 diagnosis, Respiratory Tract Infections etiology
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Objective: Assess the IntelliSep Index (ISI) for risk stratification of patients presenting to the Emergency Department (ED) with respiratory symptoms suspected of COVID-19 during the pandemic., Methods: An observational single-center study of prospective cohort of patients presenting to the ED during the early COVID-19 pandemic with respiratory symptoms and a CBC drawn within 4.5 hours of initial vital signs. A sample of this blood was aliquoted for performance of the ISI, and patients were followed for clinical outcomes. The study required no patient-centered activity beyond standard of care and treating clinicians were unaware of study enrollment and ISI test results., Main Findings: 282 patients were included. The ISI ranges 0.1 to 10.0, with three interpretation bands indicating risk of adverse outcome: low (green), 0.1-4.9; intermediate (yellow), 5.0-6.2; and high (red), 6.3-10.0. Of 193 (68.4%) tested for SARS-CoV-2, 96 (49.7%) were positive. The ISI resulted in 182 (64.5%) green, 54 (18.1%) yellow, and 46 (15.6%) red band patients. Green band patients had a 1.1% (n = 2) 3-day mortality, while yellow and red band had 3.7% (n = 2, p > .05) and 10.9% (n = 5, p < .05) 3-day mortalities, respectively. Fewer green band patients required admission (96 [52.7%]) vs yellow (44 [81.5%]) and red (43 [93.5%]). Green band patients had more hospital free days (median 23 (Q1-Q3 20-25) than yellow (median 22 [Q1-Q3 0-23], p < 0.05) and red (median 21 [Q1-Q3 0-24], p < 0.01). SOFA increased with interpretation band: green (2, [Q1-Q3 0-4]) vs yellow (4, [Q1-Q3 2-5], p < 0.001) and red (5, [Q1-Q3 3-6]) p < 0.001)., Conclusions: The ISI rapidly risk-stratifies patients presenting to the ED during the early COVID-19 pandemic with signs or suspicion of respiratory infection., Competing Interests: Authors RS, AMS, and HTKT are affiliated with Cytovale and have an equity interest in the company whose device is the subject of this study. The other authors declare that they have no competing financial interests. The system that is the subject of this study is for investigational use only (not yet cleared for commercial use) and is covered by the following patents: 8,361,415; 8,935,098; 2,619,545; and 9,897,532. This does not alter the authors’ adherence to PLOS ONE policies on sharing data and materials.
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- 2022
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30. Assessment of a Cellular Host Response Test as a Sepsis Diagnostic for Those With Suspected Infection in the Emergency Department.
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O'Neal HR Jr, Sheybani R, Caffery TS, Musso MW, Hamer D, Alwood SM, Berlinger MS, Jagneaux T, LaVie KW, O'Neal CS, Sanchez MA, Walker MK, Shah AM, Tse HTK, and Thomas CB
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Objectives: Sepsis is a common cause of morbidity and mortality. A reliable, rapid, and early indicator can help improve efficiency of care and outcomes. To assess the IntelliSep test, a novel in vitro diagnostic that quantifies the state of immune activation by measuring the biophysical properties of leukocytes, as a rapid diagnostic for sepsis and a measure of severity of illness, as defined by Sequential Organ Failure Assessment and Acute Physiology and Chronic Health Evaluation-II scores and the need for hospitalization., Design Setting Subjects: Adult patients presenting to two emergency departments in Baton Rouge, LA, with signs of infection (two of four systemic inflammatory response syndrome criteria, with at least one being aberration of temperature or WBC count) or suspicion of infection (a clinician order for culture of a body fluid), were prospectively enrolled. Sepsis status, per Sepsis-3 criteria, was determined through a 3-tiered retrospective and blinded adjudication process consisting of objective review, site-level clinician review, and final determination by independent physician adjudicators., Measurements and Main Results: Of 266 patients in the final analysis, those with sepsis had higher IntelliSep Index (median = 6.9; interquartile range, 6.1-7.6) than those adjudicated as not septic (median = 4.7; interquartile range, 3.7-5.9; p < 0.001), with an area under the receiver operating characteristic curve of 0.89 and 0.83 when compared with unanimous and forced adjudication standards, respectively. Patients with higher IntelliSep Index had higher Sequential Organ Failure Assessment (3 [interquartile range, 1-5] vs 1 [interquartile range, 0-2]; p < 0.001) and Acute Physiology and Chronic Health Evaluation-II (7 [interquartile range, 3.5-11.5] vs 5 [interquartile range, 2-9]; p < 0.05) and were more likely to be admitted to the hospital (83.6% vs 48.3%; p < 0.001) compared with those with lower IntelliSep Index., Conclusions: In patients presenting to the emergency department with signs or suspicion of infection, the IntelliSep Index is a promising tool for the rapid diagnosis and risk stratification for sepsis., Competing Interests: Drs. Sheybani, Shah, and Tse, are employees of Cytovale and played a role in the design, analysis, interpretation, writing, and decision to publish this study. Patient consent and medical direction for the study was conducted independently at the study facilities under the direction of Drs. O’Neal, Caffery, and Thomas who have no financial interest in Cytovale. The authors affiliated with Cytovale have an equity interest in the company whose device is the subject of this study. The other authors declare that they have no competing financial interests. The system that is the subject of this study is for investigational use only (not yet cleared for commercial use) and is covered by the following patents: 8,361,415; 8,935,098; 2,619,545; and 9,897,532., (Copyright © 2021 The Authors. Published by Wolters Kluwer Health, Inc. on behalf of the Society of Critical Care Medicine.)
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- 2021
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31. Development and validation of a cellular host response test as an early diagnostic for sepsis.
- Author
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Guillou L, Sheybani R, Jensen AE, Di Carlo D, Caffery TS, Thomas CB, Shah AM, Tse HTK, and O'Neal HR Jr
- Subjects
- Adult, Aged, Cohort Studies, Decision Support Techniques, Emergency Service, Hospital, Female, Hospitalization, Humans, Leukocyte Count, Male, Middle Aged, Prognosis, Prospective Studies, Reproducibility of Results, Sepsis mortality, Severity of Illness Index, Leukocytes pathology, Microfluidic Analytical Techniques methods, Sepsis diagnosis
- Abstract
Sepsis must be diagnosed quickly to avoid morbidity and mortality. However, the clinical manifestations of sepsis are highly variable and emergency department (ED) clinicians often must make rapid, impactful decisions before laboratory results are known. We previously developed a technique that allows the measurement of the biophysical properties of white blood cells as they are stretched through a microfluidic channel. In this study we describe and validate the resultant output as a model and score-the IntelliSep Index (ISI)-that aids in the diagnosis of sepsis in patients with suspected or confirmed infection from a single blood draw performed at the time of ED presentation. By applying this technique to a high acuity cohort with a 23.5% sepsis incidence (n = 307), we defined specific metrics-the aspect ratio and visco-elastic inertial response-that are more sensitive than cell size or cell count in predicting disease severity. The final model was trained and cross-validated on the high acuity cohort, and the performance and generalizability of the model was evaluated on a separate low acuity cohort with a 6.4% sepsis incidence (n = 94) and healthy donors (n = 72). For easier clinical interpretation, the ISI is divided into three interpretation bands of Green, Yellow, and Red that correspond to increasing disease severity. The ISI agreed with the diagnosis established by retrospective physician adjudication, and accurately identified subjects with severe illness as measured by SOFA, APACHE-II, hospital-free days, and intensive care unit admission. Measured using routinely collected blood samples, with a short run-time and no requirement for patient or laboratory information, the ISI is well suited to aid ED clinicians in rapidly diagnosing sepsis., Competing Interests: Authors LG, RS, AEJ, DDC, AMS, and HTKT are affiliated with Cytovale and have an equity interest in the company whose device is the subject of this study. The other authors declare that they have no competing financial interests. The system that is the subject of this study is for investigational use only (not yet cleared for commercial use) and is covered by the following patents: 8,361,415; 8,935,098; 2,619,545; and 9,897,532. This does not alter the authors adherence to PLOS ONE policies on sharing data and materials.
- Published
- 2021
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32. Community pharmacists and communication in the time of COVID-19: Applying the health belief model.
- Author
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Carico RR Jr, Sheppard J, and Thomas CB
- Subjects
- Delivery of Health Care organization & administration, Health Services Accessibility, Humans, Professional Role, Public Health, COVID-19, Communication, Community Pharmacy Services organization & administration, Pharmacists organization & administration
- Abstract
The emergence of the novel coronavirus disease (COVID-19) pandemic presents an unprecedented health communications challenge. Healthcare providers should reinforce behaviors that limit the spread of the pandemic, including social distancing and remaining in the home whenever possible. Formal communications toolkits may not be prepared in a timely fashion. Community pharmacists can reinforce mitigation behaviors by applying the health belief model (HBM). This commentary provides an overview of the HBM and offers suggestions on how community pharmacists can use it as a guide to patient communication in these uncertain contexts., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
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33. Syringe services programs and real-world research: An overview for pharmacists.
- Author
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Carico RR Jr, Hussain N, Sheppard J, Thomas CB, and Fenerty J
- Subjects
- Harm Reduction, Humans, Needle-Exchange Programs, Pharmacists, Syringes, Drug Overdose, Substance Abuse, Intravenous
- Abstract
Objective: To review key arguments supporting and criticizing syringe services programs (SSPs)., Data Sources: Peer-reviewed literature and publicly available documents., Summary: Pharmacy organizations-including the American Pharmacists Association and the American Society of Health-System Pharmacists-have stated that pharmacists should support programs that supply sterile injection materials to persons who use injection drugs. SSPs may include needle exchanges or other programs that meet these aims. Pharmacists should know that observational public health research demonstrates that SSPs can lower the transmission of blood-borne illnesses, improve linkage to care for substance use disorders, reduce health care expenditures, and reduce drug overdoses. Concerns about SSPs and increases in syringe litter or crime have not been borne out by research. Despite these findings and the positions of professional organizations, contemporary research suggests that pharmacists may be reluctant to support SSPs and other programs that would increase supply of sterile injection supplies to their communities., Conclusion: The review of evidence in this commentary should help pharmacists better understand the evidence in favor of SSPs, the potential criticisms of SSPs, and the reasons that their profession is moving to support these programs., (Copyright © 2020 American Pharmacists Association®. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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34. Geometric and dosimetric evaluation of atlas based auto-segmentation of cardiac structures in breast cancer patients.
- Author
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Kaderka R, Gillespie EF, Mundt RC, Bryant AK, Sanudo-Thomas CB, Harrison AL, Wouters EL, Moiseenko V, Moore KL, Atwood TF, and Murphy JD
- Subjects
- Breast Neoplasms surgery, Dose Fractionation, Radiation, Female, Heart radiation effects, Humans, Image Processing, Computer-Assisted methods, Organs at Risk anatomy & histology, Organs at Risk diagnostic imaging, Radiometry methods, Tomography, X-Ray Computed methods, Breast Neoplasms diagnostic imaging, Breast Neoplasms radiotherapy, Heart anatomy & histology, Heart diagnostic imaging, Radiotherapy Planning, Computer-Assisted methods
- Abstract
Background and Purpose: Auto-segmentation represents an efficient tool to segment organs on CT imaging. Primarily used in clinical setting, auto-segmentation plays an increasing role in research, particularly when analyzing thousands of images in the "big data" era. In this study we evaluate the accuracy of cardiac dosimetric endpoints derived from atlas based auto-segmentation compared to gold standard manual segmentation., Material and Methods: Heart and cardiac substructures were manually delineated on 54 breast cancer patients. Twenty-seven patients were used to build the auto-segmentation atlas, the other 27 to validate performance. We evaluated accuracy of the auto-segmented contours with standard geometric indices and assessed dosimetric endpoints., Results: Auto-segmented contours overlapped geometrically with manual contours of the heart and chambers with Dice-similarity coefficients of 0.93 ± 0.02 (mean ± standard deviation) and 0.79 ± 0.07 respectively. Similarly, there was a strong link between dosimetric parameters derived from auto-segmented and manual contours (R
2 = 0.955-1.000). On the other hand, the left anterior descending artery had little geometric overlap (Dice-similarity coefficient 0.09 ± 0.07), though acceptable representation of dosimetric parameters (R2 = 0.646-0.992)., Conclusions: The atlas based auto-segmentation approach delineates heart structures with sufficient accuracy for research purposes. Our results indicate that quality of auto-segmented contours cannot be determined by geometric values only., (Copyright © 2018. Published by Elsevier B.V.)- Published
- 2019
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35. SOST Inhibits Prostate Cancer Invasion.
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Hudson BD, Hum NR, Thomas CB, Kohlgruber A, Sebastian A, Collette NM, Coleman MA, Christiansen BA, and Loots GG
- Subjects
- Adaptor Proteins, Signal Transducing, Animals, Bone Morphogenetic Protein Receptors, Bone Morphogenetic Proteins genetics, Bone Morphogenetic Proteins metabolism, Bone Neoplasms pathology, Bone Neoplasms secondary, Cell Line, Tumor, Coculture Techniques, Genetic Markers genetics, Heterografts, Humans, Intercellular Signaling Peptides and Proteins genetics, Intercellular Signaling Peptides and Proteins metabolism, Male, Membrane Proteins genetics, Membrane Proteins metabolism, Mice, Mice, Inbred C57BL, Mice, Knockout, Neoplasm Invasiveness genetics, Neoplasm Invasiveness pathology, Neoplasm Transplantation, Osteoblasts cytology, Osteoblasts metabolism, Osteolysis pathology, Prostatic Neoplasms genetics, Wnt3A Protein metabolism, Bone Morphogenetic Proteins pharmacology, Intercellular Signaling Peptides and Proteins pharmacology, Membrane Proteins pharmacology, Prostatic Neoplasms pathology, Wnt Signaling Pathway genetics
- Abstract
Inhibitors of Wnt signaling have been shown to be involved in prostate cancer (PC) metastasis; however the role of Sclerostin (Sost) has not yet been explored. Here we show that elevated Wnt signaling derived from Sost deficient osteoblasts promotes PC invasion, while rhSOST has an inhibitory effect. In contrast, rhDKK1 promotes PC elongation and filopodia formation, morphological changes characteristic of an invasive phenotype. Furthermore, rhDKK1 was found to activate canonical Wnt signaling in PC3 cells, suggesting that SOST and DKK1 have opposing roles on Wnt signaling in this context. Gene expression analysis of PC3 cells co-cultured with OBs exhibiting varying amounts of Wnt signaling identified CRIM1 as one of the transcripts upregulated under highly invasive conditions. We found CRIM1 overexpression to also promote cell-invasion. These findings suggest that bone-derived Wnt signaling may enhance PC tropism by promoting CRIM1 expression and facilitating cancer cell invasion and adhesion to bone. We concluded that SOST and DKK1 have opposing effects on PC3 cell invasion and that bone-derived Wnt signaling positively contributes to the invasive phenotypes of PC3 cells by activating CRIM1 expression and facilitating PC-OB physical interaction. As such, we investigated the effects of high concentrations of SOST in vivo. We found that PC3-cells overexpressing SOST injected via the tail vein in NSG mice did not readily metastasize, and those injected intrafemorally had significantly reduced osteolysis, suggesting that targeting the molecular bone environment may influence bone metastatic prognosis in clinical settings.
- Published
- 2015
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36. Development and testing of a tool to assess patient preferences for phase I clinical trial participation.
- Author
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Pentz RD, Hendershot KA, Wall L, White TE, Peterson SK, Thomas CB, McCormick J, Green MJ, Lewis C, Farmer ZL, Hlubocky FJ, Dossul T, Dixon MD, Liu Y, Switchenko JM, Salvador C, Owonikoko TK, Harvey RD, and Khuri FR
- Subjects
- Feasibility Studies, Focus Groups, Humans, Physician-Patient Relations, Qualitative Research, Surveys and Questionnaires, Clinical Trials, Phase I as Topic, Patient Participation, Patient Preference, Patient Selection ethics
- Published
- 2015
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37. Pigmented villonodular synovitis of the thoracic spine.
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Roguski M, Safain MG, Zerris VA, Kryzanski JT, Thomas CB, Magge SN, and Riesenburger RI
- Subjects
- Adult, Cervical Vertebrae pathology, Female, Humans, Lumbar Vertebrae pathology, Male, Middle Aged, Synovitis, Pigmented Villonodular diagnosis, Synovitis, Pigmented Villonodular physiopathology, Young Adult, Synovitis, Pigmented Villonodular pathology, Synovitis, Pigmented Villonodular therapy, Thoracic Vertebrae pathology
- Abstract
Pigmented villonodular synovitis (PVNS) is a proliferative lesion of the synovial membranes. Knees, hips, and other large weight-bearing joints are most commonly affected. PVNS rarely presents in the spine, in particular the thoracic segments. We present a patient with PVNS in the thoracic spine and describe its clinical presentation, radiographic findings, pathologic features, and treatment as well as providing the first comprehensive meta-analysis and review of the literature on this topic, to our knowledge. A total of 28 publications reporting 56 patients were found. The lumbar and cervical spine were most frequently involved (40% and 36% of patients, respectively) with infrequent involvement of the thoracic spine (24% of patients). PVNS affects a wide range of ages, but has a particular predilection for the thoracic spine in younger patients. The mean age in the thoracic group was 22.8 years and was significantly lower than the cervical and lumbar groups (42.4 and 48.6 years, respectively; p=0.0001). PVNS should be included in the differential diagnosis of osteodestructive lesions of the spine, especially because of its potential for local recurrence. The goal of treatment should be complete surgical excision. Although the pathogenesis is not clear, mechanical strain may play an important role, especially in cervical and lumbar PVNS. The association of thoracic lesions and younger age suggests that other factors, such as neoplasia, derangement of lipid metabolism, perturbations of humoral and cellular immunity, and other undefined patient factors, play a role in the development of thoracic PVNS., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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38. Nanocomposite scaffold for chondrocyte growth and cartilage tissue engineering: effects of carbon nanotube surface functionalization.
- Author
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Chahine NO, Collette NM, Thomas CB, Genetos DC, and Loots GG
- Subjects
- Biocompatible Materials chemical synthesis, Cartilage cytology, Cell Proliferation physiology, Chondrocytes cytology, Compressive Strength physiology, Elastic Modulus, Equipment Design, Equipment Failure Analysis, Hardness physiology, Humans, Materials Testing, Nanocomposites ultrastructure, Nanotubes, Carbon ultrastructure, Particle Size, Stress, Mechanical, Surface Properties, Tensile Strength physiology, Cartilage growth & development, Chondrocytes physiology, Chondrogenesis physiology, Nanocomposites chemistry, Nanotubes, Carbon chemistry, Tissue Engineering instrumentation, Tissue Scaffolds
- Abstract
The goal of this study was to assess the long-term biocompatibility of single-wall carbon nanotubes (SWNTs) for tissue engineering of articular cartilage. We hypothesized that SWNT nanocomposite scaffolds in cartilage tissue engineering can provide an improved molecular-sized substrate for stimulation of chondrocyte growth, as well as structural reinforcement of the scaffold's mechanical properties. The effect of SWNT surface functionalization (-COOH or -PEG) on chondrocyte viability and biochemical matrix deposition was examined in two-dimensional cultures, in three-dimensional (3D) pellet cultures, and in a 3D nanocomposite scaffold consisting of hydrogels+SWNTs. Outcome measures included cell viability, histological and SEM evaluation, GAG biochemical content, compressive and tensile biomechanical properties, and gene expression quantification, including extracellular matrix (ECM) markers aggrecan (Agc), collagen-1 (Col1a1), collagen-2 (Col2a1), collagen-10 (Col10a1), surface adhesion proteins fibronectin (Fn), CD44 antigen (CD44), and tumor marker (Tp53). Our findings indicate that chondrocytes tolerate functionalized SWNTs well, with minimal toxicity of cells in 3D culture systems (pellet and nanocomposite constructs). Both SWNT-PEG and SWNT-COOH groups increased the GAG content in nanocomposites relative to control. The compressive biomechanical properties of cell-laden SWNT-COOH nanocomposites were significantly elevated relative to control. Increases in the tensile modulus and ultimate stress were observed, indicative of a tensile reinforcement of the nanocomposite scaffolds. Surface coating of SWNTs with -COOH also resulted in increased Col2a1 and Fn gene expression throughout the culture in nanocomposite constructs, indicative of increased chondrocyte metabolic activity. In contrast, surface coating of SWNTs with a neutral -PEG moiety had no significant effect on Col2a1 or Fn gene expression, suggesting that the charged nature of the -COOH surface functionalization may promote ECM expression in this culture system. The results of this study indicate that SWNTs exhibit a unique potential for cartilage tissue engineering, where functionalization with bioactive molecules may provide an improved substrate for stimulation of cellular growth and repair.
- Published
- 2014
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39. Effect of age and cytoskeletal elements on the indentation-dependent mechanical properties of chondrocytes.
- Author
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Chahine NO, Blanchette C, Thomas CB, Lu J, Haudenschild D, and Loots GG
- Subjects
- Animals, Cartilage, Articular cytology, Cartilage, Articular metabolism, Cattle, Chondrocytes physiology, Elastic Modulus physiology, Microscopy, Atomic Force, Stress, Mechanical, Aging physiology, Chondrocytes metabolism, Cytoskeleton metabolism
- Abstract
Articular cartilage chondrocytes are responsible for the synthesis, maintenance, and turnover of the extracellular matrix, metabolic processes that contribute to the mechanical properties of these cells. Here, we systematically evaluated the effect of age and cytoskeletal disruptors on the mechanical properties of chondrocytes as a function of deformation. We quantified the indentation-dependent mechanical properties of chondrocytes isolated from neonatal (1-day), adult (5-year) and geriatric (12-year) bovine knees using atomic force microscopy (AFM). We also measured the contribution of the actin and intermediate filaments to the indentation-dependent mechanical properties of chondrocytes. By integrating AFM with confocal fluorescent microscopy, we monitored cytoskeletal and biomechanical deformation in transgenic cells (GFP-vimentin and mCherry-actin) under compression. We found that the elastic modulus of chondrocytes in all age groups decreased with increased indentation (15-2000 nm). The elastic modulus of adult chondrocytes was significantly greater than neonatal cells at indentations greater than 500 nm. Viscoelastic moduli (instantaneous and equilibrium) were comparable in all age groups examined; however, the intrinsic viscosity was lower in geriatric chondrocytes than neonatal. Disrupting the actin or the intermediate filament structures altered the mechanical properties of chondrocytes by decreasing the elastic modulus and viscoelastic properties, resulting in a dramatic loss of indentation-dependent response with treatment. Actin and vimentin cytoskeletal structures were monitored using confocal fluorescent microscopy in transgenic cells treated with disruptors, and both treatments had a profound disruptive effect on the actin filaments. Here we show that disrupting the structure of intermediate filaments indirectly altered the configuration of the actin cytoskeleton. These findings underscore the importance of the cytoskeletal elements in the overall mechanical response of chondrocytes, indicating that intermediate filament integrity is key to the non-linear elastic properties of chondrocytes. This study improves our understanding of the mechanical properties of articular cartilage at the single cell level.
- Published
- 2013
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40. A new approach: resection and suture of orbicularis oculi muscle to define the upper eyelid fold and correct asymmetries.
- Author
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Thomas CB and Pérez-Guisado J
- Subjects
- Adult, Aged, Female, Humans, Male, Middle Aged, Retrospective Studies, Blepharoplasty methods, Eyelids surgery, Oculomotor Muscles surgery, Suture Techniques
- Abstract
Unlabelled: Upper-eyelid blepharoplasty is a very common procedure in aesthetic plastic surgery. Among all the literature in favor of orbicularis muscle resection, there are no commentaries associated with orbicularis muscle suture and its convenience. This article discusses a new approach: independent resection of the orbicularis oculi muscle similar in size to the resected skin and the subsequent suture of the orbicularis muscle after its resection. This results in a fine reconstruction of the upper-eyelid crease, achieves a good definition of this anatomical structure, and allows correction of asymmetries with the contralateral upper eyelid. The results obtained (98 % of patients satisfied) and no complications with this procedure make it a safe alternative for upper blepharoplasty., Level of Evidence Iv: This journal requires that authors assign a level of evidence to each article. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors www.springer.com/00266 .
- Published
- 2013
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41. APC germline mutations in individuals being evaluated for familial adenomatous polyposis: a review of the Mayo Clinic experience with 1591 consecutive tests.
- Author
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Kerr SE, Thomas CB, Thibodeau SN, Ferber MJ, and Halling KC
- Subjects
- Adenomatous Polyposis Coli pathology, Colorectal Neoplasms genetics, DNA genetics, DNA isolation & purification, DNA Mutational Analysis, Exons, Frameshift Mutation, Gene Deletion, Genome, Human, Genomics, Humans, Polymorphism, Genetic, Adenomatous Polyposis Coli genetics, Adenomatous Polyposis Coli Protein genetics, Germ-Line Mutation
- Abstract
Inactivating APC mutations cause familial adenomatous polyposis, classically characterized by hundreds to thousands of adenomatous colorectal polyps and cancer. Historically, 98% of pathogenic alterations in APC are nonsense or frameshift mutations; however, few reported series have used techniques that test for large deletions or duplications. Splice site mutations are only rarely documented. Consecutive cases (n = 1591) submitted for complete APC gene analysis during a 4-year period were reviewed. Testing included mutation screening (Sanger sequencing or conformation sensitive gel electrophoresis and protein truncation testing) with reflex confirmation sequencing. Gene deletion or duplication analysis was performed in 1421 cases by multiplex ligation-dependent probe amplification. Testing yielded 411 pathogenic, 20 likely pathogenic, 15 variant of uncertain significance, 140 likely benign, and 1005 negative reports. Identified were 168 novel variants (103 pathogenic, 5 likely pathogenic, 12 variant of uncertain significance, and 48 likely benign). Of the 431 pathogenic or likely pathogenic mutations, frameshift, nonsense, splice site, and large deletion or duplication mutations represented 43%, 42%, 9%, and 6% of cases, respectively. This is the largest report of clinical APC testing experience with concurrent multiplex ligation-dependent probe amplification. In addition to nonsense and frameshift mutations, large deletions or duplications and canonical splice site mutations are a significant cause of familial adenomatous polyposis. Despite technological advances, broad allelic, locus, and phenotypic heterogeneity continue to pose challenges for genetic testing of patients with colorectal adenomatous polyposis., (Copyright © 2013 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2013
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42. Do aspirin and statins prevent severe sepsis?
- Author
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Sanchez MA, Thomas CB, and O'Neal HR
- Subjects
- Animals, Humans, Inflammation prevention & control, Models, Animal, Anti-Inflammatory Agents, Non-Steroidal therapeutic use, Aspirin therapeutic use, Hydroxymethylglutaryl-CoA Reductase Inhibitors therapeutic use, Sepsis prevention & control
- Abstract
Purpose of Review: Sepsis is an inflammatory condition associated with significant morbidity and mortality. Given the lack of specific therapies for the condition, prevention has garnered significant interest and increased importance. The article reviews the current literature regarding the use of aspirin and statins for the prevention of sepsis., Recent Findings: Aspirin and statins have been integral in the prevention of atherosclerotic disease. Additionally, statins have proven beneficial in the prevention of nonatherosclerotic conditions secondary to their pleiotropic effects. In animal models, this pleiotropism modulates many inflammatory pathways of sepsis. The platelet also plays an integral role in this inflammatory cascade of sepsis. Scientific data indicates that antiplatelet therapy, including aspirin, may attenuate these undesirable effects of platelets. Finally, observational studies have shown that patients taking statins have a decreased incidence of sepsis and septic shock, and aspirin may potentiate these benefits., Summary: Sepsis is a deadly and costly condition with no available, specific treatment options. The statins and aspirin are well tolerated and widely used for prevention of cardiovascular disease. Because of their effects on the immune system and inflammatory pathways, they may present viable medical options for the prevention of sepsis.
- Published
- 2012
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43. Rituximab and mycophenolate combination therapy in refractory dermatomyositis with multiple autoimmune disorders.
- Author
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Parziale N, Kovacs SC, Thomas CB, and Srinivasan J
- Subjects
- Adult, Antirheumatic Agents administration & dosage, Arthritis, Rheumatoid complications, Arthritis, Rheumatoid drug therapy, Dermatologic Agents administration & dosage, Drug Therapy, Combination methods, Female, Hashimoto Disease complications, Hashimoto Disease drug therapy, Humans, Mycophenolic Acid administration & dosage, Rituximab, Antibodies, Monoclonal, Murine-Derived administration & dosage, Autoimmune Diseases complications, Autoimmune Diseases drug therapy, Dermatomyositis complications, Dermatomyositis drug therapy, Mycophenolic Acid analogs & derivatives
- Abstract
We report a case of dermatomyositis associated with rheumatoid arthritis, Hashimoto thyroiditis, and diabetes mellitus responsive only to combination of rituximab with mycophenolate. A 42-year-old woman presented with proximal muscle weakness, myalgias, fever, night sweats, and shortness of breath. Creatinine kinase was 8155 IU/L, and muscle biopsy was diagnostic of dermatomyositis. She was started on glucocorticoids; her systemic symptoms improved, but her muscle weakness persisted. She was serially treated with intravenous immunoglobulin, azathioprine, and mycophenolate mofetil without improvement in her weakness. She responded dramatically to combination therapy with rituximab and mycophenolate, with improvement in strength and normalization of creatinine kinase. She has been well controlled on rituximab infusion every 6 months and maintenance mycophenolate mofetil.
- Published
- 2011
- Full Text
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44. Short report: A calcified Taenia solium granuloma associated with recurrent perilesional edema causing refractory seizures: histopathological features.
- Author
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Ooi WW, Wijemanne S, Thomas CB, Quezado M, Brown CR, and Nash TE
- Subjects
- Albendazole therapeutic use, Animals, Anthelmintics therapeutic use, Anticonvulsants therapeutic use, Calcinosis complications, Calcinosis pathology, Edema pathology, Granuloma complications, Granuloma pathology, Humans, Levetiracetam, Male, Neurocysticercosis complications, Neurocysticercosis pathology, Piracetam analogs & derivatives, Piracetam therapeutic use, Seizures drug therapy, Valproic Acid therapeutic use, Young Adult, Calcinosis parasitology, Edema etiology, Granuloma parasitology, Neurocysticercosis parasitology, Seizures etiology, Taenia solium
- Abstract
We describe the first detailed histological description of an excised calcified Taenia solium granuloma from a patient who developed recurrent seizures associated with perilesional edema surrounding a calcified cysticercus (PEC). The capsule, around a degenerated cysticercus, contained marked mononuclear infiltrates that extended to adjacent brain, which showed marked astrocytosis, microgliosis, and inflammatory perivascular infiltrates. The presence of large numbers of mononuclear cells supports an inflammatory cause of PEC. Immunosuppression or anti-inflammatory measures may be able to treat and prevent PEC and recurrent seizures.
- Published
- 2011
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45. Preparation and characterization of a composite of demineralized bone matrix fragments and polylactide beads for bone tissue engineering.
- Author
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Thomas CB, Maxson S, and Burg KJ
- Subjects
- 3T3 Cells, Animals, Biocompatible Materials chemistry, Biocompatible Materials metabolism, Bone Substitutes metabolism, Cattle, Cell Differentiation, Cells, Cultured, Gene Expression, Glucose metabolism, Humans, Lactic Acid metabolism, Materials Testing, Mice, Osteogenesis, Stromal Cells cytology, Stromal Cells physiology, Bone Matrix chemistry, Bone Substitutes chemistry, Polyesters chemistry, Tissue Engineering methods
- Abstract
A composite that utilizes the osteoinductivity of demineralized bone matrix (DBM) and the attractive characteristics of polylactide (PL) may be useful as a tissue-engineered bone substitute. The objective of this study was to investigate the potential of a composite system consisting of DBM fragments and PL beads to support the attachment and proliferation of multipotent mouse marrow stromal cells and to provide a structure for the cells' differentiation into the osteoblast lineage. Furthermore, the overarching goal was to provide a preliminary assessment of the DBM/PL cultures in order to facilitate the development of injectable composite DBM/PL systems in the long term. Demineralized bone matrix fragments were produced from bovine femurs and polylactide beads were produced by a single emulsion process. Differential scanning calorimetry and gel-permeation chromatography were used to characterize the PL samples. Multipotent mouse marrow stromal cells were cultured on several different substrate mixtures including 100% DBM, 70% DBM:30% PL, 50% DBM:50% PL and 100% PL. Cells were analyzed using a LIVE/DEAD(®) Viability/Cytotoxicity kit as well as scanning electron microscopy. Lactic acid and glucose levels were measured throughout the study. Osteogenic differentiation of the MSCs was assessed with an alkaline phosphatase activity (ALP) assay and RT-PCR for expression of bone sialoprotein, osteocalcin and runt-related transcription factor 2. All cell types attached more readily to DBM fragments than PL beads resulting in more lactic acid production in the samples containing mostly DBM. The ALP activity and gene expression results indicate that the optimal mixture for the D1 line of multipotent mouse marrow stromal cells differentiation into osteoblasts is 100% PL. However, it is likely that the decreased pH in the DBM containing samples resulted in an environment that was not very conducive for osteogenic differentiation.
- Published
- 2011
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46. Prospective analysis of DNA damage and repair markers of lung cancer risk from the Prostate, Lung, Colorectal and Ovarian (PLCO) Cancer Screening Trial.
- Author
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Sigurdson AJ, Jones IM, Wei Q, Wu X, Spitz MR, Stram DA, Gross MD, Huang WY, Wang LE, Gu J, Thomas CB, Reding DJ, Hayes RB, and Caporaso NE
- Subjects
- Aged, Antibiotics, Antineoplastic, Bleomycin, Cell Line, Tumor, Comet Assay, Female, Humans, Male, Middle Aged, Mutagenicity Tests, Randomized Controlled Trials as Topic, Risk Factors, Biomarkers, Tumor genetics, DNA Damage genetics, DNA Repair genetics, Genetic Predisposition to Disease, Lung Neoplasms genetics
- Abstract
Mutagen challenge and DNA repair assays have been used in case-control studies for nearly three decades to assess human cancer risk. The findings still engender controversy because blood was drawn after cancer diagnosis so the results may be biased, a type called 'reverse causation'. We therefore used Epstein-Barr virus-transformed lymphoblastoid cell lines established from prospectively collected peripheral blood samples to evaluate lung cancer risk in relation to three DNA repair assays: alkaline Comet assay, host cell reactivation (HCR) assay with the mutagen benzo[a]pyrene diol epoxide and the bleomycin mutagen sensitivity assay. Cases (n = 117) were diagnosed with lung cancer between 0.3 and 6 years after blood collection and controls (n = 117) were frequency matched on calendar year and age at blood collection, gender and smoking history; all races were included. Case and control status was unknown to laboratory investigators. In unconditional logistic regression analyses, statistically significantly increased lung cancer odds ratios (OR(adjusted)) were observed for bleomycin mutagen sensitivity as quartiles of chromatid breaks/cell [relative to the lowest quartile, OR = 1.2, 95% confidence interval (CI): 0.5-2.5; OR = 1.4, 95% CI: 0.7-3.1; OR = 2.1, 95% CI: 1.0-4.4, respectively, P(trend) = 0.04]. The magnitude of the association between the bleomycin assay and lung cancer risk was modest compared with those reported in previous lung cancer studies but was strengthened when we included only incident cases diagnosed more than a year after blood collection (P(trend) = 0.02), supporting the notion the assay may be a measure of cancer susceptibility. The Comet and HCR assays were unrelated to lung cancer risk.
- Published
- 2011
- Full Text
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47. Endogenous DNA damage and testicular germ cell tumors.
- Author
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Cook MB, Sigurdson AJ, Jones IM, Thomas CB, Graubard BI, Korde L, Greene MH, and McGlynn KA
- Subjects
- Comet Assay methods, Confidence Intervals, DNA, Humans, Logistic Models, Male, Odds Ratio, Seminoma genetics, DNA Damage genetics, Neoplasms, Germ Cell and Embryonal genetics, Testicular Neoplasms genetics
- Abstract
Testicular germ cell tumors are comprised of two histologic groups, seminomas and non-seminomas. We postulated that the possible divergent pathogeneses of these histologies may be partially explained by variable levels of net endogenous DNA damage. To test our hypothesis, we conducted a case-case analysis of 51 seminoma and 61 non-seminoma patients using data and specimens from the Familial Testicular Cancer study and the U.S. Radiologic Technologists cohort. A lymphoblastoid cell line was cultured for each patient and the alkaline comet assay was used to determine four parameters: tail DNA, tail length, comet distributed moment (CDM) and Olive tail moment (OTM). Odds ratios (OR) and 95% confidence intervals (95% CI) were estimated using logistic regression. Values for tail length, tail DNA, CDM and OTM were modelled as categorical variables using the 50th and 75th percentiles of the seminoma group. Tail DNA was significantly associated with non-seminoma compared with seminoma (OR(50th percentile) = 3.31, 95% CI: 1.00, 10.98; OR(75th percentile) = 3.71, 95% CI: 1.04, 13.20; p for trend = 0.039). OTM exhibited similar, albeit statistically non-significant, risk estimates (OR(50th percentile) = 2.27, 95% CI: 0.75, 6.87; OR(75th percentile) = 2.40, 95% CI: 0.75, 7.71; p for trend = 0.12) whereas tail length and CDM showed no association. In conclusion, the results for tail DNA and OTM indicate that net endogenous levels are higher in patients who develop non-seminoma compared with seminoma. This may partly explain the more aggressive biology and younger age-of-onset of this histologic subgroup compared with the relatively less aggressive, later-onset seminoma.
- Published
- 2009
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48. No evidence for differences in DNA damage assessed before and after a cancer diagnosis.
- Author
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Bhatti P, Sigurdson AJ, Thomas CB, Iwan A, Alexander BH, Kampa D, Bowen L, Doody MM, and Jones IM
- Subjects
- Aged, Aged, 80 and over, Case-Control Studies, Comet Assay, Confidence Intervals, Female, Humans, Medical Records, Middle Aged, Neoplasms blood, DNA Damage, Neoplasms diagnosis
- Abstract
The overwhelming majority of studies that have found increased cancer risk associated with functional deficits in DNA repair used a case-control design, in which measurements were made after cancer diagnosis. However, there are concerns about whether the cancer itself or cancer treatment affected the conclusions (reverse causation bias). We assessed the effect of cancer diagnosis among 26 breast cancer controls who had blood collected during 2001 to 2003 and again in 2005 to 2006 after being diagnosed with cancer. Using the alkaline comet assay, we quantified DNA damage in untreated lymphoblastoid cell lines. Comet distributed moment, olive tail moment, percentage of DNA in tail, and comet tail length were summarized as the geometric mean of 100 cells. For comet distributed moment, olive tail moment, tail DNA, and tail length, the proportions of women with before diagnosis values higher than after diagnosis were 65%, 50%, 50%, and 46%, respectively. We found no significant differences in the before or after diagnosis mean comet values. Median cut-points were determined from the before diagnosis distribution, and we used conditional logistic regression to calculate odds ratios (OR) and upper 95% bounds of the confidence intervals. ORs ranged from 0.6 to 0.9 with upper confidence interval bounds of 1.9 and 2.6, meaning biased ORs above 2.6 are unlikely. We found no evidence that reverse causation bias is an important concern in case-control studies using the comet assay applied to cell lines collected after cancer diagnosis. More work is needed to characterize the effect of cancer diagnosis on other phenotypic assays.
- Published
- 2008
- Full Text
- View/download PDF
49. Exploration of methods to identify polymorphisms associated with variation in DNA repair capacity phenotypes.
- Author
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Jones IM, Thomas CB, Xi T, Mohrenweiser HW, and Nelson DO
- Subjects
- Cell Line, DNA Breaks, Single-Stranded, Genetic Predisposition to Disease, Genotype, Humans, Multivariate Analysis, Phenotype, Risk Assessment, DNA Repair, Genetic Variation, Polymorphism, Genetic, Polymorphism, Single Nucleotide
- Abstract
Elucidating the relationship between polymorphic sequences and risk of common disease is a challenge. For example, although it is clear that variation in DNA repair genes is associated with familial cancer, aging and neurological disease, progress toward identifying polymorphisms associated with elevated risk of sporadic disease has been slow. This is partly due to the complexity of the genetic variation, the existence of large numbers of mostly low frequency variants and the contribution of many genes to variation in susceptibility. There has been limited development of methods to find associations between genotypes having many polymorphisms and pathway function or health outcome. We have explored several statistical methods for identifying polymorphisms associated with variation in DNA repair phenotypes. The model system used was 80 cell lines that had been resequenced to identify variation; 191 single nucleotide substitution polymorphisms (SNPs) are included, of which 172 are in 31 base excision repair pathway genes, 19 in 5 anti-oxidation genes, and DNA repair phenotypes based on single strand breaks measured by the alkaline Comet assay. Univariate analyses were of limited value in identifying SNPs associated with phenotype variation. Of the multivariable model selection methods tested: the easiest that provided reduced error of prediction of phenotype was simple counting of the variant alleles predicted to encode proteins with reduced activity, which led to a genotype including 52 SNPs; the best and most parsimonious model was achieved using a two-step analysis without regard to potential functional relevance: first SNPs were ranked by importance determined by random forests regression (RFR), followed by cross-validation in a second round of RFR modeling that included ever more SNPs in declining order of importance. With this approach six SNPs were found to minimize prediction error. The results should encourage research into utilization of multivariate analytical methods for epidemiological studies of the association of genetic variation in complex genotypes with risk of common diseases.
- Published
- 2007
- Full Text
- View/download PDF
50. Canine conjunctival hemangioma and hemangiosarcoma: a retrospective evaluation of 108 cases (1989-2004).
- Author
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Pirie CG, Knollinger AM, Thomas CB, and Dubielzig RR
- Subjects
- Animals, Case-Control Studies, Conjunctival Neoplasms epidemiology, Dog Diseases etiology, Dog Diseases pathology, Dogs, Female, Hemangioma epidemiology, Hemangiosarcoma epidemiology, Male, Pedigree, Records veterinary, Retrospective Studies, Risk Factors, United States epidemiology, Wisconsin epidemiology, Conjunctival Neoplasms veterinary, Dog Diseases epidemiology, Hemangioma veterinary, Hemangiosarcoma veterinary
- Abstract
Canine conjunctival tumors of vascular endothelial origin are common, although under-reported. The purpose of this study was to evaluate the epidemiology of and potential risk factors for these tumors. This study evaluated 108 cases (70 hemangiomas, 38 hemangiosarcomas) from 8300 canine submissions between 1989 and 2004. Signalment, location, pigmentation, size, duration, diagnosis, margins, ancillary therapy, and geographic location were recorded. Follow-up information was available for 49 cases. Each case was matched with two unaffected controls and compared using logistic regression analysis. Average age upon presentation was 8.6 years; there was no sex predilection. Risk of conjunctival tumors was statistically different among breed groups (P = 0.0010), demonstrating a propensity to occur in groups likely to have increased outdoor activity. Primary involvement occurred within nonpigmented epithelium along the leading edge of the nictitating membrane (41/108) and temporal bulbar conjunctiva (33/108). The etiology remains unknown; however, the strong site predilection, involvement of nonpigmented epithelium, and development within specific breed classes strongly suggest ultraviolet (UV) light as a significant risk factor. In a full-logistic model including breed, gender, age, and UV exposure, UV was not a statistically significant variable (P = 0.1215). In a reduced-model including UV only, significance was approached (P = 0.0696) and posthoc contrast demonstrated a significant linear trend with increasing UV exposure (P = 0.0147). In separate analysis of risks associated with hemangiosarcoma, compared with hemangioma, breed was not significant while increasing UV exposure was significant (P = 0.0381). Early surgical therapy is recommended and may be curative; however, recurrence is possible and more likely with hemangiosarcomas (11/20).
- Published
- 2006
- Full Text
- View/download PDF
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