1. Microfluidic qPCR for detection of 21 common respiratory viruses in children with influenza-like illness
- Author
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Thomas J. Saville, Hayley Colton, Sheikh Jarju, Edwin P. Armitage, Sainabou Drammeh, Simon Tazzyman, Ya Jankey Jagne, Hadijatou J. Sallah, Elina Senghore, Cariad M. Evans, Thomas C. Darton, and Thushan I. de Silva
- Subjects
Microfluidics ,Polymerase chain reaction ,Respiratory virus ,Influenza-like illness ,Surveillance ,Medicine ,Science - Abstract
Abstract Multiple respiratory viruses lead to high morbidity and mortality, yet global surveillance platforms focus primarily on seasonal influenza viruses. The COVID-19 pandemic and new RSV vaccines highlight the importance of a broader approach. Upper respiratory tract swabs from children aged 24–59 months presenting with influenza-like illness in The Gambia were collected during follow-up of a live-attenuated influenza vaccine randomised controlled trial in 2017–18. A microfluidic quantitative polymerase chain reaction (qPCR) assay was established and used to detect 21 respiratory viruses. 76.6% of samples had one or more viruses detected (n = 121/158). The viruses detected most frequently were rhinovirus (n = 37/158, 23.4%) and adenovirus (n = 34/158, 21.5%), followed by parainfluenza virus 3, influenza B and human metapneumovirus B. A third of positive samples had multiple viruses detected (two n = 31/121, 25.6%; three n = 9/121, 7.4%). Our data demonstrates how microfluidic qPCR is a useful tool for high-throughput, comprehensive detection of multiple respiratory viruses in surveillance platforms. Rapidly changing epidemiology exemplifies the need for new, broader approaches to virus surveillance in low-resource settings to respond to future epidemics and to guide the need for and use of new prevention and therapeutic measures.
- Published
- 2024
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