46 results on '"Thomas Aust"'
Search Results
2. The Natural Product Cavinafungin Selectively Interferes with Zika and Dengue Virus Replication by Inhibition of the Host Signal Peptidase
- Author
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David Estoppey, Chia Min Lee, Marco Janoschke, Boon Heng Lee, Kah Fei Wan, Hongping Dong, Philippe Mathys, Ireos Filipuzzi, Tim Schuhmann, Ralph Riedl, Thomas Aust, Olaf Galuba, Gregory McAllister, Carsten Russ, Martin Spiess, Tewis Bouwmeester, Ghislain M.C. Bonamy, and Dominic Hoepfner
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Summary: Flavivirus infections by Zika and dengue virus impose a significant global healthcare threat with no US Food and Drug Administration (FDA)-approved vaccination or specific antiviral treatment available. Here, we present the discovery of an anti-flaviviral natural product named cavinafungin. Cavinafungin is a potent and selectively active compound against Zika and all four dengue virus serotypes. Unbiased, genome-wide genomic profiling in human cells using a novel CRISPR/Cas9 protocol identified the endoplasmic-reticulum-localized signal peptidase as the efficacy target of cavinafungin. Orthogonal profiling in S. cerevisiae followed by the selection of resistant mutants pinpointed the catalytic subunit of the signal peptidase SEC11 as the evolutionary conserved target. Biochemical analysis confirmed a rapid block of signal sequence cleavage of both host and viral proteins by cavinafungin. This study provides an effective compound against the eukaryotic signal peptidase and independent confirmation of the recently identified critical role of the signal peptidase in the replicative cycle of flaviviruses. : Recent outbreaks and lack of effective treatments against dengue and Zika virus have caused public concerns. Estoppey et al. have identified cavinafungin as exerting potent and selective antiviral activity by targeting the signal-binding cleft of the catalytic subunit of the endoplasmic reticulum signal peptidase. Keywords: Zika virus, dengue virus, cavinafungin, signal peptidase, SEC11A, SEC11, CRISPR/Cas9, chemogenomic profiling
- Published
- 2017
- Full Text
- View/download PDF
3. Author Correction: Jawsamycin exhibits in vivo antifungal properties by inhibiting Spt14/Gpi3-mediated biosynthesis of glycosylphosphatidylinositol
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Yue Fu, David Estoppey, Silvio Roggo, Dominik Pistorius, Florian Fuchs, Christian Studer, Ashraf S. Ibrahim, Thomas Aust, Frederic Grandjean, Manuel Mihalic, Klaus Memmert, Vivian Prindle, Etienne Richard, Ralph Riedl, Sven Schuierer, Eric Weber, Jürg Hunziker, Frank Petersen, Jianshi Tao, and Dominic Hoepfner
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Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
- Full Text
- View/download PDF
4. Identification of elongation factor G as the conserved cellular target of argyrin B.
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Beat Nyfeler, Dominic Hoepfner, Deborah Palestrant, Christina A Kirby, Lewis Whitehead, Robert Yu, Gejing Deng, Ruth E Caughlan, Angela L Woods, Adriana K Jones, S Whitney Barnes, John R Walker, Swann Gaulis, Ervan Hauy, Saskia M Brachmann, Philipp Krastel, Christian Studer, Ralph Riedl, David Estoppey, Thomas Aust, N Rao Movva, Zuncai Wang, Michael Salcius, Gregory A Michaud, Gregory McAllister, Leon O Murphy, John A Tallarico, Christopher J Wilson, and Charles R Dean
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Medicine ,Science - Abstract
Argyrins, produced by myxobacteria and actinomycetes, are cyclic octapeptides with antibacterial and antitumor activity. Here, we identify elongation factor G (EF-G) as the cellular target of argyrin B in bacteria, via resistant mutant selection and whole genome sequencing, biophysical binding studies and crystallography. Argyrin B binds a novel allosteric pocket in EF-G, distinct from the known EF-G inhibitor antibiotic fusidic acid, revealing a new mode of protein synthesis inhibition. In eukaryotic cells, argyrin B was found to target mitochondrial elongation factor G1 (EF-G1), the closest homologue of bacterial EF-G. By blocking mitochondrial translation, argyrin B depletes electron transport components and inhibits the growth of yeast and tumor cells. Further supporting direct inhibition of EF-G1, expression of an argyrin B-binding deficient EF-G1 L693Q variant partially rescued argyrin B-sensitivity in tumor cells. In summary, we show that argyrin B is an antibacterial and cytotoxic agent that inhibits the evolutionarily conserved target EF-G, blocking protein synthesis in bacteria and mitochondrial translation in yeast and mammalian cells.
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- 2012
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5. Jawsamycin exhibits in vivo antifungal properties by inhibiting Spt14/Gpi3-mediated biosynthesis of glycosylphosphatidylinositol
- Author
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Eric Weber, Juerg Hunziker, Dominic Hoepfner, Ralph Riedl, Vivian Prindle, Sven Schuierer, Yue Fu, Silvio Roggo, Florian Fuchs, Ashraf S. Ibrahim, Jianshi Tao, Frank Petersen, Manuel Mihalic, David Estoppey, Dominik Pistorius, Christian Studer, Etienne Richard, Klaus Memmert, Thomas Aust, and Frederic Grandjean
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0301 basic medicine ,Male ,Antifungal Agents ,Glycosylphosphatidylinositols ,General Physics and Astronomy ,chemistry.chemical_compound ,Mice ,lcsh:Science ,Lung ,Multidisciplinary ,biology ,Hep G2 Cells ,Hydrogen-Ion Concentration ,Inbred ICR ,Infectious Diseases ,Biochemistry ,Multigene Family ,Mucorales ,lipids (amino acids, peptides, and proteins) ,Infection ,Rhizopus ,Saccharomyces cerevisiae Proteins ,Protein subunit ,Science ,030106 microbiology ,Saccharomyces cerevisiae ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Inhibitory Concentration 50 ,Biosynthesis ,In vivo ,Genetics ,Animals ,Humans ,Reporter ,Cell Proliferation ,Reporter gene ,Cell growth ,Animal ,Glycosyltransferases ,General Chemistry ,biology.organism_classification ,HCT116 Cells ,In vitro ,carbohydrates (lipids) ,030104 developmental biology ,chemistry ,Genes ,Polyketides ,Disease Models ,Fermentation ,lcsh:Q ,K562 Cells - Abstract
Biosynthesis of glycosylphosphatidylinositol (GPI) is required for anchoring proteins to the plasma membrane, and is essential for the integrity of the fungal cell wall. Here, we use a reporter gene-based screen in Saccharomyces cerevisiae for the discovery of antifungal inhibitors of GPI-anchoring of proteins, and identify the oligocyclopropyl-containing natural product jawsamycin (FR-900848) as a potent hit. The compound targets the catalytic subunit Spt14 (also referred to as Gpi3) of the fungal UDP-glycosyltransferase, the first step in GPI biosynthesis, with good selectivity over the human functional homolog PIG-A. Jawsamycin displays antifungal activity in vitro against several pathogenic fungi including Mucorales, and in vivo in a mouse model of invasive pulmonary mucormycosis due to Rhyzopus delemar infection. Our results provide a starting point for the development of Spt14 inhibitors for treatment of invasive fungal infections.
- Published
- 2020
6. Interlaboratory Comparison of Branched GDGT Temperature and pH Proxies Using Soils and Lipid Extracts
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Cindy De Jonge, Francien Peterse, Klaas G. J. Nierop, Thomas M. Blattmann, Marcelo Alexandre, Salome Ansanay‐Alex, Thomas Austin, Mathieu Babin, Edouard Bard, Thorsten Bauersachs, Jerome Blewett, Brenna Boehman, Isla S. Castañeda, Junhui Chen, Martina L. G. Conti, Sergio Contreras, Julia Cordes, Nina Davtian, Bart vanDongen, Bella Duncan, Felix J. Elling, Valier Galy, Shaopeng Gao, Jens Hefter, Kai‐Uwe Hinrichs, Mitchell R. Helling, Mariska Hoorweg, Ellen Hopmans, Juzhi Hou, Yongsong Huang, Arnaud Huguet, Guodong Jia, Cornelia Karger, Brendan J. Keely, Stephanie Kusch, Hui Li, Jie Liang, Julius S. Lipp, Weiguo Liu, Hongxuan Lu, Kai Mangelsdorf, Hayley Manners, Alfredo Martinez Garcia, Guillemette Menot, Gesine Mollenhauer, B. David A. Naafs, Sebastian Naeher, Lauren K. O'Connor, Ethan M. Pearce, Ann Pearson, Zhiguo Rao, Marta Rodrigo‐Gámiz, Chris Rosendahl, Frauke Rostek, Rui Bao, Prasanta Sanyal, Florence Schubotz, Wesley Scott, Rahul Sen, Appy Sluijs, Rienk Smittenberg, Ioana Stefanescu, Jia Sun, Paul Sutton, Jess Tierney, Eduardo Tejos, Joan Villanueva, Huanye Wang, Josef Werne, Masanobu Yamamoto, Huan Yang, and Aifeng Zhou
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round robin ,GDGT ,interlaboratory comparison ,Geophysics. Cosmic physics ,QC801-809 ,Geology ,QE1-996.5 - Abstract
Abstract Ratios of glycerol dialkyl glycerol tetraethers (GDGT), which are membrane lipids of bacteria and archaea, are at the base of several paleoenvironmental proxies. They are frequently applied to soils as well as lake‐ and marine sediments to generate records of past temperature and soil pH. To derive meaningful environmental information from these reconstructions, high analytical reproducibility is required. Based on submitted results by 39 laboratories from across the world, which employ a diverse range of analytical and quantification methods, we explored the reproducibility of brGDGT‐based proxies (MBT′5ME, IR, and #ringstetra) measured on four soil samples and four soil lipid extracts. Correct identification and integration of 5‐ and 6‐methyl brGDGTs is a prerequisite for the robust calculation of proxy values, but this can be challenging as indicated by the large inter‐interlaboratory variation. The exclusion of statistical outliers improves the reproducibility, where the remaining uncertainty translates into a temperature offset from median proxy values of 0.3–0.9°C and a pH offset of 0.05–0.3. There is no apparent systematic impact of the extraction method and sample preparation steps on the brGDGT ratios. Although reported GDGT concentrations are generally consistent within laboratories, they vary greatly between laboratories. This large variability in brGDGT quantification may relate to variations in ionization efficiency or specific mass spectrometer settings possibly impacting the response of brGDGTs masses relative to that of the internal standard used. While ratio values of GDGT are generally comparable, quantities can currently not be compared between laboratories.
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- 2024
- Full Text
- View/download PDF
7. The Natural Product Cavinafungin Selectively Interferes with Zika and Dengue Virus Replication by Inhibition of the Host Signal Peptidase
- Author
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Chia Min Lee, Kah Fei Wan, Ralph Riedl, Marco Janoschke, Ghislain M. C. Bonamy, Tewis Bouwmeester, Olaf Galuba, Hongping Dong, Philippe Mathys, Tim Schuhmann, David Estoppey, Martin Spiess, Carsten Russ, Dominic Hoepfner, Ireos Filipuzzi, Boon Heng Lee, Gregory McAllister, and Thomas Aust
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0301 basic medicine ,Signal peptide ,Protein subunit ,030106 microbiology ,Saccharomyces cerevisiae ,Dengue virus ,medicine.disease_cause ,Virus Replication ,General Biochemistry, Genetics and Molecular Biology ,Zika virus ,03 medical and health sciences ,Lipopeptides ,Viral Proteins ,medicine ,CRISPR ,Humans ,Flavivirus Infections ,lcsh:QH301-705.5 ,Signal peptidase ,Biological Products ,biology ,Cas9 ,Genome, Human ,Serine Endopeptidases ,Membrane Proteins ,Genomics ,Zika Virus ,Dengue Virus ,biology.organism_classification ,HCT116 Cells ,Virology ,Protein Subunits ,030104 developmental biology ,lcsh:Biology (General) ,Gene Knockdown Techniques ,CRISPR-Cas Systems - Abstract
Summary: Flavivirus infections by Zika and dengue virus impose a significant global healthcare threat with no US Food and Drug Administration (FDA)-approved vaccination or specific antiviral treatment available. Here, we present the discovery of an anti-flaviviral natural product named cavinafungin. Cavinafungin is a potent and selectively active compound against Zika and all four dengue virus serotypes. Unbiased, genome-wide genomic profiling in human cells using a novel CRISPR/Cas9 protocol identified the endoplasmic-reticulum-localized signal peptidase as the efficacy target of cavinafungin. Orthogonal profiling in S. cerevisiae followed by the selection of resistant mutants pinpointed the catalytic subunit of the signal peptidase SEC11 as the evolutionary conserved target. Biochemical analysis confirmed a rapid block of signal sequence cleavage of both host and viral proteins by cavinafungin. This study provides an effective compound against the eukaryotic signal peptidase and independent confirmation of the recently identified critical role of the signal peptidase in the replicative cycle of flaviviruses. : Recent outbreaks and lack of effective treatments against dengue and Zika virus have caused public concerns. Estoppey et al. have identified cavinafungin as exerting potent and selective antiviral activity by targeting the signal-binding cleft of the catalytic subunit of the endoplasmic reticulum signal peptidase. Keywords: Zika virus, dengue virus, cavinafungin, signal peptidase, SEC11A, SEC11, CRISPR/Cas9, chemogenomic profiling
- Published
- 2017
8. Reducing the Rate of Abdominal Hysterectomies: Experience From a UK University Teaching Hospital
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Thomas Aust, David Rowlands, Vasileios Minas, and Nahid Gul
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03 medical and health sciences ,medicine.medical_specialty ,030219 obstetrics & reproductive medicine ,0302 clinical medicine ,business.industry ,Emergency medicine ,medicine ,Obstetrics and Gynecology ,University teaching ,Medical emergency ,medicine.disease ,business ,030217 neurology & neurosurgery - Published
- 2018
9. Design and Synthesis of Metabolically Stable tRNA Synthetase Inhibitors Derived from Cladosporin
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Esther K. Schmitt, Christian Studer, Patrick Rollin, Madeleine Livendahl, Beatrice Ranieri, Marion Rusch, Carsten Spanka, Arnaud Thevenon, Thomas Aust, Maude Patoor, Laure C. Bouchez, Karl Gademann, and Dominic Hoepfner
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Lysine-tRNA Ligase ,Plasmodium falciparum ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Antimalarials ,Structure-Activity Relationship ,Drug Discovery ,Humans ,Potency ,Antimalarial Agent ,Enzyme Inhibitors ,Malaria, Falciparum ,Molecular Biology ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Chemistry ,Drug discovery ,Organic Chemistry ,biology.organism_classification ,0104 chemical sciences ,Bioavailability ,Enzyme ,Isocoumarins ,Transfer RNA ,Molecular Medicine ,Cladosporin - Abstract
Selective and specific inhibitors of Plasmodium falciparum lysyl-tRNA synthetase represent promising therapeutic antimalarial avenues. Cladosporin was identified as a potent P. falciparum lysyl-tRNA synthetase inhibitor, with an activity against parasite lysyl-tRNA synthetase >100-fold more potent than that of the activity registered against the human enzyme. Despite its compelling activity, cladosporin exhibits poor oral bioavailability; a critical requirement for antimalarial drugs. Thus, the quest to develop metabolically stable cladosporin-derived analogues, while retaining similar selectivity and potency to that of the natural compound, has begun. Chemogenomic profiling of a designed library allowed an entirely innovative structure-activity relationship study to be initiated; this shed light on structural evidence of a privileged scaffold with a unique activity against tRNA synthetases.
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- 2019
10. Total laparoscopic hysterectomy for benign, malignant and pre-malignant gynaecological pathology: relation between surgical outcome and body mass index
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Thomas Aust, Claudia Ventii, David Rowlands, Nicola Murray, Nahid Gul, and Vasileios Minas
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Laparoscopic surgery ,medicine.medical_specialty ,030219 obstetrics & reproductive medicine ,medicine.diagnostic_test ,business.industry ,General surgery ,medicine.medical_treatment ,Reproductive medicine ,Obstetrics and Gynecology ,Interventional radiology ,Overweight ,medicine.disease ,Obesity ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,Surgical oncology ,030220 oncology & carcinogenesis ,Medicine ,medicine.symptom ,Complication ,business ,Body mass index - Abstract
Obesity is having an increasingly significant impact on health care services across the developed world. Although initially laparoscopic surgery was thought to be contraindicated in cases of obesity, surgeons, including gynaecologists, are now routinely performing laparoscopic surgery on obese patients. Limited research has been conducted into the effect of obesity on outcomes of major laparoscopic pelvic surgery. Some authors report worsening outcomes in obese women having laparoscopic hysterectomies; others suggest that complication rates do not increase, but operating times are longer. Here, we report our experience from 250 total laparoscopic hysterectomies performed for benign, malignant and pre-malignant conditions, and we compare outcomes among normal, overweight, obese and morbidly obese patients. We used a composite score index calculated on the basis of operating and theatre times, estimated blood loss, length of stay and number and severity of complications for our comparisons. Our conclusions suggest that meticulous, consistent surgical technique may produce similar outcomes in normal and obese patients having total laparoscopic hysterectomy, with longer operating/theatre times noted only at BMI levels >40.
- Published
- 2016
11. Author Correction: Jawsamycin exhibits in vivo antifungal properties by inhibiting Spt14/Gpi3-mediated biosynthesis of glycosylphosphatidylinositol
- Author
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Jianshi Tao, Frank Petersen, Eric Weber, David Estoppey, Vivian Prindle, Sven Schuierer, Christian Studer, Dominik Pistorius, Jürg Hunziker, Etienne Richard, Manuel Mihalic, Klaus Memmert, Ralph Riedl, Silvio Roggo, Ashraf S. Ibrahim, Dominic Hoepfner, Yue Fu, Florian Fuchs, Thomas Aust, and Frederic Grandjean
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Male ,Antifungal ,Saccharomyces cerevisiae Proteins ,Glycosylphosphatidylinositols ,medicine.drug_class ,Glycosylphosphatidylinositol ,Science ,General Physics and Astronomy ,Saccharomyces cerevisiae ,Article ,General Biochemistry, Genetics and Molecular Biology ,Inhibitory Concentration 50 ,Mice ,chemistry.chemical_compound ,Biosynthesis ,Genes, Reporter ,In vivo ,Target identification ,medicine ,Animals ,Humans ,lcsh:Science ,Author Correction ,Lung ,Antifungal agents ,Cell Proliferation ,Mice, Inbred ICR ,Multidisciplinary ,Chemistry ,Fungi ,Glycosyltransferases ,Hep G2 Cells ,General Chemistry ,Hydrogen-Ion Concentration ,HCT116 Cells ,Disease Models, Animal ,Biochemistry ,Multigene Family ,Polyketides ,Fermentation ,Mucorales ,lcsh:Q ,Pathogens ,K562 Cells ,Rhizopus - Abstract
Biosynthesis of glycosylphosphatidylinositol (GPI) is required for anchoring proteins to the plasma membrane, and is essential for the integrity of the fungal cell wall. Here, we use a reporter gene-based screen in Saccharomyces cerevisiae for the discovery of antifungal inhibitors of GPI-anchoring of proteins, and identify the oligocyclopropyl-containing natural product jawsamycin (FR-900848) as a potent hit. The compound targets the catalytic subunit Spt14 (also referred to as Gpi3) of the fungal UDP-glycosyltransferase, the first step in GPI biosynthesis, with good selectivity over the human functional homolog PIG-A. Jawsamycin displays antifungal activity in vitro against several pathogenic fungi including Mucorales, and in vivo in a mouse model of invasive pulmonary mucormycosis due to Rhyzopus delemar infection. Our results provide a starting point for the development of Spt14 inhibitors for treatment of invasive fungal infections., Biosynthesis of glycosylphosphatidylinositol (GPI) is essential for the integrity of the fungal cell wall. Here, the authors show that the natural product jawsamycin inhibits GPI biosynthesis by targeting a subunit of the fungal UDP-glycosyltransferase, and displays pronounced activity against pathogenic fungi of the order Mucorales.
- Published
- 2020
12. Target Identification and Mechanism of Action of Picolinamide and Benzamide Chemotypes with Antifungal Properties
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Thomas Aust, Fulvia Bono, Herbert Waldmann, Ralph Riedl, Sasikala Thavam, Anna-Lena Keller, Francesca Perruccio, Danish Khan, Verena Pries, Slava Ziegler, Gabriel Schaaf, Vytas A. Bankaitis, Ashutosh Tripathi, Christina Nöcker, Michael Fitz, Zebin Hong, Philipp Johnen, Dominic Hoepfner, and Ireos Filipuzzi
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0301 basic medicine ,Antifungal Agents ,Saccharomyces cerevisiae Proteins ,Chemical structure ,030106 microbiology ,Clinical Biochemistry ,Saccharomyces cerevisiae ,Microbial Sensitivity Tests ,Biology ,Molecular Dynamics Simulation ,Crystallography, X-Ray ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Structure-Activity Relationship ,Drug Resistance, Fungal ,Drug Discovery ,Candida albicans ,medicine ,Chemogenomics ,Amino Acid Sequence ,Phospholipid Transfer Proteins ,Benzamide ,Mode of action ,Picolinic Acids ,Molecular Biology ,Pharmacology ,Binding Sites ,Phosphatidylcholine transfer protein ,biology.organism_classification ,Amides ,Protein Structure, Tertiary ,030104 developmental biology ,Aspergillus ,Mechanism of action ,Drug development ,chemistry ,Benzamides ,Mutagenesis, Site-Directed ,Molecular Medicine ,medicine.symptom ,Sequence Alignment - Abstract
Invasive fungal infections are accompanied by high mortality rates that range up to 90%. At present, only three different compound classes are available for use in the clinic, and these often suffer from low bioavailability, toxicity, and drug resistance. These issues emphasize an urgent need for novel antifungal agents. Herein, we report the identification of chemically versatile benzamide and picolinamide scaffolds with antifungal properties. Chemogenomic profiling and biochemical assays with purified protein identified Sec14p, the major phosphatidylinositol/phosphatidylcholine transfer protein in Saccharomyces cerevisiae, as the sole essential target for these compounds. A functional variomics screen identified resistance-conferring residues that localized to the lipid-binding pocket of Sec14p. Determination of the X-ray co-crystal structure of a Sec14p-compound complex confirmed binding in this cavity and rationalized both the resistance-conferring residues and the observed structure-activity relationships. Taken together, these findings open new avenues for rational compound optimization and development of novel antifungal agents.
- Published
- 2017
13. Laparoscopic management of an 11-week rudimentary uterine horn pregnancy using extracorporeal Roeder knot to secure the dilated vascular pedicle
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Vasileios Minas, Elizabeth Shaw, and Thomas Aust
- Subjects
Pregnancy ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Obstetrics and Gynecology ,Interventional radiology ,medicine.disease ,Extracorporeal ,Uterine rupture ,Surgery ,Ureter ,medicine.anatomical_structure ,Feticide ,Laparotomy ,Medicine ,business ,Laparoscopy - Abstract
Pregnancy in a uterine rudimentary horn carries a high risk of uterine rupture with severe and potentially lethal intra-abdominal haemorrhage. There is now growing evidence that this condition can be safely managed by minimally invasive surgery. We report a case of an unruptured 11-week rudimentary horn pregnancy that was diagnosed and treated laparoscopically. We have performed a literature review using PubMed, Embase and Cochrane Database of Systematic Reviews to identify relevant cases and draw conclusions with regards to their management. We have collated 20 published cases of rudimentary horn pregnancies that were managed by laparoscopy. The surgical technique appears consistent among these cases with few variations. In advanced gestations, feticide may need to be performed. Morcellation has been shown to be possible without compromising patient safety from trophoblast spill. The possibility of uncommon presentations such as duplicated or absent ureter should be taken into account. Extracorporeal Roeder knot can be used safely to secure unusually dilated vascular pedicles. Overall, laparoscopy appears to be as safe as and potentially superior to laparotomy for the management of rudimentary horn pregnancies.
- Published
- 2014
14. High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions
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Mathias Frederiksen, Uwe Plikat, Sven Schuierer, Marc Altorfer, Bhupinder Bhullar, Esther K. Schmitt, David Estoppey, Thomas Aust, Sophie Brachat, John A. Tallarico, Britta Knapp, Ireos Filipuzzi, Juerg Eichenberger, Nicole Hartmann, Christian Studer, Ralph Riedl, Annika Hohendahl, Lukas Baeriswyl, Frank Staedtler, Edward J. Oakeley, Florian Nigsch, Raffaele Cerino, Stefan Wetzel, Yann Abraham, Heather Sadlish, Stephen B. Helliwell, Jeffrey A. Porter, N. Rao Movva, Mark C. Fishman, Frank Petersen, Virginie Petitjean, Nicolas Melin, Philipp Krastel, Lena Chang, and Dominic Hoepfner
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Genetics ,Antifungal Agents ,Saccharomyces cerevisiae Proteins ,ved/biology ,Molecular Sequence Data ,ved/biology.organism_classification_rank.species ,Saccharomyces cerevisiae ,Computational biology ,Mitochondrion ,Biology ,biology.organism_classification ,Microbiology ,Small molecule ,Yeast ,Biosynthetic Pathways ,High-Throughput Screening Assays ,Conserved sequence ,Hierarchical clustering ,Drug Resistance, Fungal ,Gene Expression Regulation, Fungal ,Eukaryote ,Model organism ,Gene ,Phylogeny - Abstract
Due to evolutionary conservation of biology, experimental knowledge captured from genetic studies in eukaryotic model organisms provides insight into human cellular pathways and ultimately physiology. Yeast chemogenomic profiling is a powerful approach for annotating cellular responses to small molecules. Using an optimized platform, we provide the relative sensitivities of the heterozygous and homozygous deletion collections for nearly 1800 biologically active compounds. The data quality enables unique insights into pathways that are sensitive and resistant to a given perturbation, as demonstrated with both known and novel compounds. We present examples of novel compounds that inhibit the therapeutically relevant fatty acid synthase and desaturase (Fas1p and Ole1p), and demonstrate how the individual profiles facilitate hypothesis-driven experiments to delineate compound mechanism of action. Importantly, the scale and diversity of tested compounds yields a dataset where the number of modulated pathways approaches saturation. This resource can be used to map novel biological connections, and also identify functions for unannotated genes. We validated hypotheses generated by global two-way hierarchical clustering of profiles for (i) novel compounds with a similar mechanism of action acting upon microtubules or vacuolar ATPases, and (ii) an un-annotated ORF, YIL060w, that plays a role in respiration in the mitochondria. Finally, we identify and characterize background mutations in the widely used yeast deletion collection which should improve the interpretation of past and future screens throughout the community. This comprehensive resource of cellular responses enables the expansion of our understanding of eukaryotic pathway biology.
- Published
- 2014
15. Urinary tract injuries in laparoscopic gynaecological surgery; prevention, recognition and management
- Author
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Vasileios Minas, Nahid Gul, Mark Doyle, Thomas Aust, and David Rowlands
- Subjects
Laparoscopic surgery ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Incidence (epidemiology) ,Urinary system ,Gynaecological surgery ,Surgery ,Ureter ,medicine.anatomical_structure ,Intervention (counseling) ,medicine ,Major complication ,business ,Laparoscopy - Abstract
Key content Injury of the urinary tract is the most common major complication of gynaecological laparoscopic surgery. Injury to either bladder or ureter results in significant morbidity for the patient and may lead to litigation. Knowledge of pelvic anatomy, training and meticulous technique are of paramount importance in reducing the incidence of urinary tract injury. Ideally an injury should be identified and repaired during the primary operation, but vigilance in the immediate postoperative period may result in early recognition and intervention. Learning objectives To understand the common risk factors of urinary tract injury at laparoscopy. To learn strategies to prevent injury where possible. To learn strategies for intraoperative and postoperative recognition and repair of such injuries. To understand the significance of multi-disciplinary management of such injuries. Ethical issues Limited evidence shows that laparoscopic hysterectomy may carry a higher risk of urinary tract injury compared with abdominal hysterectomy. Should patients be counselled accordingly?
- Published
- 2014
16. Pain perception following computer-controlled versus conventional dental anesthesia: randomized controlled trial
- Author
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Sameh Attia, Thomas Austermann, Andreas May, Mohamed Mekhemar, Jonas Conrad, Michael Knitschke, Sebastian Böttger, Hans-Peter Howaldt, and Abanoub Riad
- Subjects
Computed-controlled local anesthesia ,Dental anesthesia ,Dental education ,Local anesthesia ,Nerve block ,Pain perception ,Dentistry ,RK1-715 - Abstract
Abstract Background The administration of local anesthesia (LA) in dental practice requires an injection which is the leading cause of patients’ fear and anxiety. Computer-controlled local anesthetic injector, designed to reduce the pain of performing local anesthesia by controlling the speed of injection. This single-blind randomised control trial aimed to compare the pain perception after computer-controlled local anesthesia (CCLA) and conventional LA. Methods Dental students were both test and operator group versus an experienced dentist as additional operator of the LA. Data were collected regarding gender, age, medical condition, smoking habits. Additionally, operator feedback about the handling, pain at insertion and during infiltration, excitement (Dental Anxiety Scale), and complications were assessed. Results Out of the 60 included participants, the majority were females (n = 41; 68.3%), medically healthy (n = 54; 90%), and did not receive medications (n = 54; 90%). While the participating students administered 62 (51.7%) injections, the experienced dentist administered 58 (48.3%) injections. The difference in pain perception on puncture between CCLA and conventional injections was not statistically significant (Sig. = 0.285); however, pain perception during injection was significantly different (Sig. = 0.029) between CCLA (1.65 ± 1.93) and conventional injections (2.49 ± 2.31). Conclusion The professional experience influenced the pain perception while applying the LA. CCLA did not reduce pain on puncture significantly; however, pain perception during the injection was significantly reduced in the case of using CCLA devices compared to the conventional syringe.
- Published
- 2022
- Full Text
- View/download PDF
17. Evidence for a Functionally Relevant Rocaglamide Binding Site on the eIF4A–RNA Complex
- Author
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Sven Schuierer, Thomas Aust, N. Rao Movva, Bhupinder Bhullar, Britta Knapp, Ralph Riedl, Gabriela Galicia-Vázquez, Silvio Roggo, Stephen B. Helliwell, Jerry Pelletier, Christian Studer, Heather Sadlish, Lena Chang, Dominic Hoepfner, John A. Porco, and C. Gregory Paris
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Genetics ,Binding Sites ,biology ,In silico ,Helicase ,RNA ,Saccharomyces cerevisiae ,General Medicine ,Computational biology ,Models, Biological ,Biochemistry ,Triterpenes ,Article ,chemistry.chemical_compound ,Eukaryotic translation ,Eukaryotic Initiation Factor-4F ,Rocaglamide ,chemistry ,Eukaryotic initiation factor ,eIF4A ,biology.protein ,Molecular Medicine ,Binding site ,Benzofurans - Abstract
Translation initiation is an emerging target in oncology and neurobiology indications. Naturally derived and synthetic rocaglamide scaffolds have been used to interrogate this pathway, however, there is uncertainty regarding their precise mechanism(s) of action. We exploited the genetic tractability of yeast to define the primary effect of both a natural and a synthetic rocaglamide in a cellular context, and characterized the molecular target using biochemical studies and in silico modeling. Chemogenomic profiling and mutagenesis in yeast identified the eIF (eukaryotic Initiation Factor) 4A helicase homologue as the primary molecular target of rocaglamides, and defined a discrete set of residues near the RNA binding motif which confer resistance to both compounds. Three of the eIF4A mutations were characterized regarding their functional consequences on activity and response to rocaglamide inhibition. These data support a model whereby rocaglamides stabilize an eIF4A-RNA interaction to either alter the level and/or impair the activity of the eIF4F complex. Furthermore, in silico modeling supports the annotation of a binding pocket delineated by the RNA substrate and the residues identified from our mutagenesis screen. As expected from the high degree of conservation of the eukaryotic translation pathway, these observations are consistent with previous observations in mammalian model systems. Importantly, we demonstrate that the chemically distinct silvestrol and synthetic rocaglamides share a common mechanism of action, which will be critical for optimization of physiologically stable derivatives. Finally, these data confirm the value of the rocaglamide scaffold for exploring the impact of translational modulation on disease.
- Published
- 2013
18. Selective and Specific Inhibition of the Plasmodium falciparum Lysyl-tRNA Synthetase by the Fungal Secondary Metabolite Cladosporin
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Stephan Meister, Richard Glynne, Uwe Plikat, N. Rao Movva, Chek Shik Lim, Christian Studer, Frantisek Supek, Esther K. Schmitt, David Plouffe, Susan McCormack, Case W. McNamara, Frank Staedtler, Simona Cotesta, Mark C. Fishman, Elizabeth A. Winzeler, Thomas Aust, Sven Schuierer, Jeffrey A. Porter, Nicole Hartmann, Dominic Hoepfner, Frank Petersen, Ralph Riedl, John A. Tallarico, Christophe Bodenreider, and Thierry T. Diagana
- Subjects
Lysine-tRNA Ligase ,Cancer Research ,Antiparasitic ,medicine.drug_class ,Plasmodium falciparum ,Drug Evaluation, Preclinical ,Protozoan Proteins ,Secondary metabolite ,Microbiology ,Cell Line ,Antimalarials ,Inhibitory Concentration 50 ,03 medical and health sciences ,Parasitic Sensitivity Tests ,Immunology and Microbiology(all) ,Virology ,parasitic diseases ,medicine ,Protein biosynthesis ,Humans ,Enzyme Inhibitors ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,030306 microbiology ,Fungi ,biology.organism_classification ,3. Good health ,Amino acid ,Enzyme ,Isocoumarins ,chemistry ,Mechanism of action ,Biochemistry ,Protein Biosynthesis ,Transfer RNA ,Commentary ,Parasitology ,medicine.symptom ,medicine.drug - Abstract
SummaryWith renewed calls for malaria eradication, next-generation antimalarials need be active against drug-resistant parasites and efficacious against both liver- and blood-stage infections. We screened a natural product library to identify inhibitors of Plasmodium falciparum blood- and liver-stage proliferation. Cladosporin, a fungal secondary metabolite whose target and mechanism of action are not known for any species, was identified as having potent, nanomolar, antiparasitic activity against both blood and liver stages. Using postgenomic methods, including a yeast deletion strains collection, we show that cladosporin specifically inhibits protein synthesis by directly targeting P. falciparum cytosolic lysyl-tRNA synthetase. Further, cladosporin is >100-fold more potent against parasite lysyl-tRNA synthetase relative to the human enzyme, which is conferred by the identity of two amino acids within the enzyme active site. Our data indicate that lysyl-tRNA synthetase is an attractive, druggable, antimalarial target that can be selectively inhibited.
- Published
- 2012
19. Development and in vitro testing of a new method of urine preparation for retrograde ejaculation; the Liverpool solution
- Author
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Thomas Aust, Stephen A. Troup, William D. Fraser, D. Iwan Lewis-Jones, and Stephanie Brookes
- Subjects
Male ,Retrograde ejaculation ,Time Factors ,Drinking ,Administration, Oral ,Semen ,Urine ,Sodium Chloride ,Semen analysis ,Andrology ,medicine ,Humans ,Ejaculation ,Infertility, Male ,Sperm motility ,Urine cytology ,medicine.diagnostic_test ,urogenital system ,business.industry ,Osmolar Concentration ,Obstetrics and Gynecology ,Hydrogen-Ion Concentration ,medicine.disease ,Spermatozoa ,Sperm ,Culture Media ,Sodium Bicarbonate ,Reproductive Medicine ,Sperm Retrieval ,Sperm Motility ,business - Abstract
Objective To design a new method for oral preparation of urine for sperm retrieval after retrograde ejaculation (RE) and to test the motility of sperm exposed to prepared and unprepared urine. Design In vitro testing of urine conditions and sperm motility. Setting Assisted conception unit at a teaching hospital in the United Kingdom. Patient(s) Ten healthy volunteers to provide urine and sperm specimens from men attending the unit for semen analysis. Intervention(s) Various solutions of sodium bicarbonate and sodium chloride were drunk by a single subject until a suitable regimen was achieved. This regimen (called the Liverpool solution) was then tested on 10 volunteers. Samples of sperm were then added to prepared urine, unprepared urine, and culture medium, and the motility was analyzed. Main Outcome Measure(s) Urinary pH and osmolarity, sperm motility. Result(s) Urine produced by the 10 volunteers had a mean pH of 7.47 (range, 7.23–7.79) and a mean osmolarity of 289 mOsmol/L (range, 225–412 mOsmol/L), similar to that of medium. The progressive motility of sperm exposed to the unprepared urine was reduced (42.4% of sperm in medium), whereas that in the prepared urine was similar to that in the control medium. Conclusion(s) Liverpool solution can be used in any unit treating couples with RE, and it is a noninvasive and inexpensive regimen that may optimize urine pH and osmolarity for sperm survival after RE.
- Published
- 2008
20. Short-term palinopsia after three doses of clomiphene: A case report
- Author
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Naia McMillan-Castanares, Melissa Sue Melgar, and Thomas Austin Melgar
- Subjects
Palinopsia ,Clomiphene ,Visual trailing ,Visual phenomenon ,Drug-induced ,Reversible ,Surgery ,RD1-811 ,Gynecology and obstetrics ,RG1-991 - Abstract
Palinopsia is a phenomenon consisting of the persistence or recurrence of a visual image after the stimulus has been removed, and can be static or kinetic. Palinopsia can be caused by a variety of different factors. Drug-induced palinopsia usually takes the form of visual trailing, a subset of illusory palinopsia, where patients report that an object leaves after-images trailing behind the object. There have been few reported cases of clomiphene-induced palinopsia. All have led to permanent palinopsia. This report demonstrates a case of transient clomiphene-induced palinopsia. Palinopsia occurred after only three doses of clomiphene and resolved within 10 days of cessation of therapy.
- Published
- 2023
- Full Text
- View/download PDF
21. Infertility after fertility-preserving surgery for cervical carcinoma: the next challenge for reproductive medicine?
- Author
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Robert Macdonald, Thomas Aust, Rafet Gazvani, and J. Jonathan O. Herod
- Subjects
Infertility ,medicine.medical_specialty ,Reproductive Techniques, Assisted ,media_common.quotation_subject ,Reproductive medicine ,Uterine Cervical Neoplasms ,Trachelectomy ,Fertility ,Gynecologic Surgical Procedures ,Obstetric Labor, Premature ,Pregnancy ,medicine ,Humans ,Treatment Failure ,Radical Hysterectomy ,Neoplasm Staging ,media_common ,Cervical cancer ,Obstetrics ,business.industry ,Female infertility ,Obstetrics and Gynecology ,General Medicine ,History, 20th Century ,medicine.disease ,Abortion, Spontaneous ,Reproductive Medicine ,Female ,business ,Infertility, Female - Abstract
Radical trachelectomy is an operation developed as an alternative to radical hysterectomy for patients with small-volume, early stage cervical cancer, who wish to retain their fertility. The body of the uterus is left in place, so that future pregnancies can occur. Patients who have undergone radical trachelectomy may face problems conceiving naturally and may request assisted conception. This article explains the operation and the difficulties that those working in reproductive medicine may face.
- Published
- 2007
22. FR171456 is a specific inhibitor of mammalian NSDHL and yeast Erg26p
- Author
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Sven Schuierer, Lukas Oberer, Ralph Riedl, Jianshi Tao, Silvio Roggo, John S. Gounarides, Charlotte Miault, Stephen B. Helliwell, Marc Bergdoll, Juan Zhang, Klaus Memmert, Anais Margerit, Dominic Hoepfner, Pierre-Eloi Imbert, Christian N. Parker, Shantanu Karkare, Andreas Hofmann, Stefan Reinker, Hans-Ulrich Naegeli, Mathias Frederiksen, Alban Muller, Hong Yin, Ireos Filipuzzi, Trixie Wagner, Juliet R. Leighton-Davis, Alain Rahier, Philipp Krastel, Vivian Prindle, Celine Fioretto, Richard Knochenmuss, Thomas Aust, N. Rao Movva, Jessica A. Sexton, and Rolf Jeker
- Subjects
3-Hydroxysteroid Dehydrogenases ,Antifungal Agents ,Saccharomyces cerevisiae Proteins ,Saccharomyces cerevisiae ,General Physics and Astronomy ,Saccharomyces ,Article ,General Biochemistry, Genetics and Molecular Biology ,chemistry.chemical_compound ,Drug Resistance, Fungal ,Ergosterol ,Candida albicans ,Replicon ,Binding site ,chemistry.chemical_classification ,Multidisciplinary ,biology ,General Chemistry ,biology.organism_classification ,Yeast ,Cholesterol ,Enzyme ,Biochemistry ,chemistry ,Mutation ,NAD+ kinase - Abstract
FR171456 is a natural product with cholesterol-lowering properties in animal models, but its molecular target is unknown, which hinders further drug development. Here we show that FR171456 specifically targets the sterol-4-alpha-carboxylate-3-dehydrogenase (Saccharomyces cerevisiae—Erg26p, Homo sapiens—NSDHL (NAD(P) dependent steroid dehydrogenase-like)), an essential enzyme in the ergosterol/cholesterol biosynthesis pathway. FR171456 significantly alters the levels of cholesterol pathway intermediates in human and yeast cells. Genome-wide yeast haploinsufficiency profiling experiments highlight the erg26/ERG26 strain, and multiple mutations in ERG26 confer resistance to FR171456 in growth and enzyme assays. Some of these ERG26 mutations likely alter Erg26 binding to FR171456, based on a model of Erg26. Finally, we show that FR171456 inhibits an artificial Hepatitis C viral replicon, and has broad antifungal activity, suggesting potential additional utility as an anti-infective. The discovery of the target and binding site of FR171456 within the target will aid further development of this compound., FR171456 is a bioactive chemical produced by some microorganisms. Here, the authors identify the enzyme NSDHL of the sterol synthesis pathway as the molecular target of FR171456, rendering it the first compound to specifically target this class of enzyme in yeast and mammalian cells.
- Published
- 2015
23. Advantages and Challenges of Phenotypic Screens: The Identification of Two Novel Antifungal Geranylgeranyltransferase I Inhibitors
- Author
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Dominic Hoepfner, Ralph Riedl, Ireos Filipuzzi, Verena Pries, Jianshi Tao, Sven Schuierer, Thomas Aust, and Simona Cotesta
- Subjects
0301 basic medicine ,Models, Molecular ,Antifungal Agents ,Phenotypic screening ,Saccharomyces cerevisiae ,Molecular Conformation ,Plasma protein binding ,Computational biology ,Microbial Sensitivity Tests ,Bioinformatics ,Biochemistry ,Analytical Chemistry ,03 medical and health sciences ,Prenylation ,Drug Resistance, Fungal ,Drug Discovery ,Metabolomics ,Binding site ,Enzyme Inhibitors ,Candida albicans ,Alkyl and Aryl Transferases ,biology ,Drug discovery ,Gene Expression Profiling ,biology.organism_classification ,Phenotype ,030104 developmental biology ,Mutation ,Molecular Medicine ,Biotechnology ,Protein Binding - Abstract
Phenotypic screens are effective starting points to identify compounds with desirable activities. To find novel antifungals, we conducted a phenotypic screen in Saccharomyces cerevisiae and identified two discrete scaffolds with good growth inhibitory characteristics. Lack of broad-spectrum activity against pathogenic fungi called for directed chemical compound optimization requiring knowledge of the molecular target. Chemogenomic profiling identified effects on geranylgeranyltransferase I (GGTase I), an essential enzyme that prenylates proteins involved in cell signaling, such as Cdc42p and Rho1p. Selection of resistant mutants against both compounds confirmed the target hypothesis and enabled mapping of the compound binding site to the substrate binding pocket. Differential resistance-conferring mutations and selective substrate competition demonstrate distinct binding modes for the two chemotypes. Exchange of the S. cerevisiae GGTase I subunits with those of Candida albicans resulted in an absence of growth inhibition for both compounds, thus confirming the identified target as well as the narrow antifungal spectrum of activity. This prenylation pathway is reported to be nonessential in pathogenic species and challenges the therapeutic value of these leads while demonstrating the importance of an integrated target identification platform following a phenotypic screen.
- Published
- 2015
24. Nannocystin A: an Elongation Factor 1 Inhibitor from Myxobacteria with Differential Anti-Cancer Properties
- Author
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Howard R Miller, Eric Weber, Xiaobing Xie, Francesca Perruccio, Felipa A. Mapa, David Estoppey, Markus Schirle, Philipp Krastel, Nathan T. Ross, Ralph Riedl, Kathrin Buntin, Trixie Wagner, Silvio Roggo, Christian Thibaut, Jason R. Thomas, Dominic Hoepfner, Xuewen Pan, Brigitta Liechty, Esther K. Schmitt, Thomas Aust, Klaus Memmert, and Peter Aspesi
- Subjects
Proteomics ,Antifungal Agents ,Macrocyclic Compounds ,Stereochemistry ,Antineoplastic Agents ,Apoptosis ,Catalysis ,Didemnin B ,Structure-Activity Relationship ,Eukaryotic translation ,Peptide Elongation Factor 1 ,Myxobacteria ,Neoplasms ,Candida albicans ,Tumor Cells, Cultured ,Structure–activity relationship ,Humans ,Myxococcales ,Binding site ,Cell Proliferation ,biology ,Molecular Structure ,Chemistry ,General Medicine ,General Chemistry ,Genomics ,biology.organism_classification ,Eukaryotic translation elongation factor 1 alpha 1 ,Elongation factor ,Biochemistry - Abstract
Cultivation of myxobacteria of the Nannocystis genus led to the isolation and structure elucidation of a class of novel cyclic lactone inhibitors of elongation factor 1. Whole genome sequence analysis and annotation enabled identification of the putative biosynthetic cluster and synthesis process. In biological assays the compounds displayed anti-fungal and cytotoxic activity. Combined genetic and proteomic approaches identified the eukaryotic translation elongation factor 1α (EF-1α) as the primary target for this compound class. Nannocystin A (1) displayed differential activity across various cancer cell lines and EEF1A1 expression levels appear to be the main differentiating factor. Biochemical and genetic evidence support an overlapping binding site of 1 with the anti-cancer compound didemnin B on EF-1α. This myxobacterial chemotype thus offers an interesting starting point for further investigations of the potential of therapeutics targeting elongation factor 1.
- Published
- 2015
25. Decatransin, a new natural product inhibiting protein translocation at the Sec61/SecYEG translocon
- Author
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Bhupinder Bhullar, Robert Bruccoleri, Britta Knapp, Sven Schuierer, Thomas Aust, Ralph Riedl, Benedikt W. Bauer, Nicole Hartmann, David Estoppey, Joanne Wong, Tina Junne, Nicolas Melin, Frank Petersen, Christian Studer, Jürg Eichenberger, Martin Beibel, Philipp Krastel, Edward J. Oakeley, Dominic Hoepfner, Martin Spiess, Tom A. Rapoport, John A. Tallarico, Lukas Oberer, and Guglielmo Roma
- Subjects
Sec61 ,Saccharomyces cerevisiae Proteins ,Chromosomal translocation ,Saccharomyces cerevisiae ,Biology ,Endoplasmic Reticulum ,Ribosome ,Peptides, Cyclic ,Polymorphism, Single Nucleotide ,Ascomycota ,Chlorocebus aethiops ,Animals ,Humans ,Cells, Cultured ,SecYEG Translocon ,Biological Products ,Endoplasmic reticulum ,Membrane Proteins ,Cell Biology ,Translocon ,Sec61 translocon complex ,HCT116 Cells ,SEC61 Translocon ,Protein Transport ,Biochemistry ,COS Cells ,SEC Translocation Channels ,Research Article - Abstract
A new cyclic decadepsipeptide was isolated from Chaetosphaeria tulasneorum with potent bioactivity on mammalian and yeast cells. Chemogenomic profiling in S. cerevisiae indicated that the Sec61 translocon complex, the machinery for protein translocation and membrane insertion at the endoplasmic reticulum, is the target. The profiles were similar to those of cyclic heptadepsipeptides of a distinct chemotype (including HUN-7293 and cotransin) that had previously been shown to inhibit cotranslational translocation at the mammalian Sec61 translocon. Unbiased, genome-wide mutagenesis followed by full-genome sequencing in both fungal and mammalian cells identified dominant mutations in Sec61p (yeast) or Sec61α1 (mammals) that conferred resistance. Most, but not all, of these mutations affected inhibition by both chemotypes, despite an absence of structural similarity. Biochemical analysis confirmed inhibition of protein translocation into the endoplasmic reticulum of both co- and post-translationally translocated substrates by both chemotypes, demonstrating a mechanism independent of a translating ribosome. Most interestingly, both chemotypes were found to also inhibit SecYEG, the bacterial Sec61 translocon homolog. We suggest ‘decatransin’ as the name for this new decadepsipeptide translocation inhibitor.
- Published
- 2015
26. Purse-string suture technique to enable laparoscopic management of the interstitial gestation of a heterotopic pregnancy
- Author
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Gregory M. Cario, Aoife O'Neill, and Thomas Aust
- Subjects
medicine.medical_specialty ,Heterotopic pregnancy ,Ectopic pregnancy ,business.industry ,medicine.medical_treatment ,Suture Techniques ,Twins ,Obstetrics and Gynecology ,medicine.disease ,Pregnancy, Ectopic ,Surgery ,Reproductive Medicine ,Pregnancy ,Private practice ,Laparotomy ,medicine ,Humans ,Gestation ,Female ,Laparoscopy ,Interstitial pregnancy ,business ,Ligature ,Fetal Death ,Twin Pregnancy - Abstract
Objective To describe the laparoscopic management of an interstitial gestation of a heterotopic pregnancy. Design Case report and technique description. Setting Tertiary-level private practice. Patient(s) Woman with a 6-week gestation spontaneous heterotopic twin pregnancy: one twin intrauterine, one interstitial. Intervention(s) A purse-string suture was applied to the proximal portion of the interstitial heterotopic pregnancy. Main Outcome Measure(s) To enable a cornual resection to be performed with minimal bleeding and without recourse to laparotomy. Result(s) At 8 weeks gestation an ultrasound scan confirmed a viable singleton intrauterine pregnancy, but a scan at 12 weeks showed a missed miscarriage. Conclusion(s) The embedding of the suture into the uterine serosa prevents slipping of the ligature that could occur with a pretied loop.
- Published
- 2011
27. Retrograde ejaculation
- Author
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Thomas Aust and Iwan Lewis-Jones
- Subjects
Retrograde ejaculation ,business.industry ,Anesthesia ,medicine ,medicine.disease ,business - Published
- 2014
28. Recent advances and application of generative adversarial networks in drug discovery, development, and targeting
- Author
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Satvik Tripathi, Alisha Isabelle Augustin, Adam Dunlop, Rithvik Sukumaran, Suhani Dheer, Alex Zavalny, Owen Haslam, Thomas Austin, Jacob Donchez, Pushpendra Kumar Tripathi, and Edward Kim
- Subjects
Generative adversarial networks ,Machine learning ,Artificial intelligence ,Pharmacology ,Drug discovery ,Drug targeting ,Science (General) ,Q1-390 - Abstract
A rising amount of research demonstrates that artificial intelligence and machine learning approaches can provide an essential basis for the drug design and discovery process. Deep learning algorithms are being developed in response to recent advances in computer technology as part of the creation of therapeutically relevant medications for the treatment of a variety of ailments. In this review, we focus on the most recent advances in the areas of drug design and discovery research employing generative deep learning methodologies such as generative adversarial network (GAN) frameworks. To begin, we examine drug design and discovery studies that use several GAN methodologies to evaluate one key application, such as molecular de novo design in drug design and discovery. Furthermore, we discuss many GAN models for dimension reduction of single-cell data at the preclinical stage of the drug development pipeline. We also show various experiments in de novo peptide and protein creation utilizing GAN frameworks. Furthermore, we discuss the limits of past drug design and discovery research employing GAN models. Finally, we give a discussion on future research prospects and obstacles.
- Published
- 2022
- Full Text
- View/download PDF
29. Identification and evaluation of novel acetolactate synthase inhibitors as antifungal agents
- Author
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Dominic Hoepfner, Simona Cotesta, Sven Schuierer, Neil S. Ryder, John A. Tallarico, Jianshi Tao, David Estoppey, Daryl L. Richie, Ralph Riedl, Katherine V. Thompson, Christian Studer, Jessica A. Sexton, Thomas Zabawa, Vivian Prindle, Thomas Aust, Joseph Drumm, Nicole Hartmann, Jürg Eichenberger, and N. Rao Movva
- Subjects
Serum ,Low protein ,Antifungal Agents ,Saccharomyces cerevisiae Proteins ,In silico ,Protein subunit ,Saccharomyces cerevisiae ,Microbial Sensitivity Tests ,Biology ,Catalytic Domain ,Humans ,Pharmacology (medical) ,Mechanisms of Action: Physiological Effects ,Amino acid synthesis ,Pharmacology ,chemistry.chemical_classification ,Acetolactate synthase ,Sulfonamides ,biology.organism_classification ,Yeast ,Amino acid ,High-Throughput Screening Assays ,Molecular Docking Simulation ,Acetolactate Synthase ,Infectious Diseases ,Pyrimidines ,Sulfonylurea Compounds ,chemistry ,Biochemistry ,Mutation ,biology.protein ,Amino Acids, Branched-Chain ,Protein Binding - Abstract
High-throughput phenotypic screening against the yeast Saccharomyces cerevisiae revealed a series of triazolopyrimidine-sulfonamide compounds with broad-spectrum antifungal activity, no significant cytotoxicity, and low protein binding. To elucidate the target of this series, we have applied a chemogenomic profiling approach using the S. cerevisiae deletion collection. All compounds of the series yielded highly similar profiles that suggested acetolactate synthase (Ilv2p, which catalyzes the first common step in branched-chain amino acid biosynthesis) as a possible target. The high correlation with profiles of known Ilv2p inhibitors like chlorimuron-ethyl provided further evidence for a similar mechanism of action. Genome-wide mutagenesis in S. cerevisiae identified 13 resistant clones with 3 different mutations in the catalytic subunit of acetolactate synthase that also conferred cross-resistance to established Ilv2p inhibitors. Mapping of the mutations into the published Ilv2p crystal structure outlined the chlorimuron-ethyl binding cavity, and it was possible to dock the triazolopyrimidine-sulfonamide compound into this pocket in silico . However, fungal growth inhibition could be bypassed through supplementation with exogenous branched-chain amino acids or by the addition of serum to the medium in all of the fungal organisms tested except for Aspergillus fumigatus . Thus, these data support the identification of the triazolopyrimidine-sulfonamide compounds as inhibitors of acetolactate synthase but suggest that targeting may be compromised due to the possibility of nutrient bypass in vivo .
- Published
- 2013
30. Idiopathic brachial plexus neuritis after laparoscopic treatment of endometriosis: a complication that may mimic position-related brachial plexus injury
- Author
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Vasileios Minas and Thomas Aust
- Subjects
Parsonage–Turner syndrome ,Adult ,medicine.medical_specialty ,Neuritis ,Endometriosis ,Diagnosis, Differential ,medicine ,Brachial Plexus Neuritis ,Humans ,Brachial Plexus ,cardiovascular diseases ,Ovarian Diseases ,Intraoperative Complications ,business.industry ,Obstetrics and Gynecology ,Postoperative complication ,medicine.disease ,Surgery ,Brachial plexus injury ,Female ,Laparoscopy ,Differential diagnosis ,Complication ,business - Abstract
We report the case of a 37-year-old woman who developed idiopathic brachial plexus neuritis, also referred to as Parsonage-Turner syndrome, after laparoscopic excision of endometriosis. The differential diagnosis between this non-position-related neuritis and brachial plexus injury is discussed. The aim of this report was to raise awareness on this distressing postoperative complication.
- Published
- 2013
31. Identification of Elongation Factor G as the Conserved Cellular Target of Argyrin B
- Author
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Christian Studer, John A. Tallarico, Christine D. Wilson, David Estoppey, Lewis Whitehead, Zuncai Wang, Ralph Riedl, Adriana K. Jones, S. Whitney Barnes, Swann Gaulis, Ruth E. Caughlan, Philipp Krastel, Leon Murphy, Thomas Aust, Gregory McAllister, N. Rao Movva, Gejing Deng, Michael Salcius, Dominic Hoepfner, Deborah Palestrant, Ervan Hauy, Christina A. Kirby, Gregory A. Michaud, Beat Nyfeler, Saskia M. Brachmann, Robert Yu, Angela L. Woods, Charles R. Dean, and John R. Walker
- Subjects
Macromolecular Assemblies ,Mitochondrial translation ,Mutant ,lcsh:Medicine ,Crystallography, X-Ray ,Ribosome ,Biochemistry ,Conserved sequence ,Drug Discovery ,Molecular Cell Biology ,Protein biosynthesis ,Peptide Elongation Factor G ,Biomacromolecule-Ligand Interactions ,lcsh:Science ,Conserved Sequence ,Cellular Stress Responses ,Mammals ,Multidisciplinary ,biology ,Cell Death ,Pseudomonas aeruginosa ,Structural Proteins ,Oligopeptides ,Allosteric Site ,Research Article ,Protein Binding ,Burkholderia ,Saccharomyces cerevisiae ,Molecular Sequence Data ,Biophysics ,Microbial Sensitivity Tests ,Cell Growth ,Molecular Genetics ,Mitochondrial Proteins ,Genetic Mutation ,Cell Line, Tumor ,Chemical Biology ,Genetics ,Animals ,Humans ,Amino Acid Sequence ,Biology ,Sequence Homology, Amino Acid ,lcsh:R ,Proteins ,biology.organism_classification ,Elongation factor ,lcsh:Q ,Mutant Proteins - Abstract
Argyrins, produced by myxobacteria and actinomycetes, are cyclic octapeptides with antibacterial and antitumor activity. Here, we identify elongation factor G (EF-G) as the cellular target of argyrin B in bacteria, via resistant mutant selection and whole genome sequencing, biophysical binding studies and crystallography. Argyrin B binds a novel allosteric pocket in EF-G, distinct from the known EF-G inhibitor antibiotic fusidic acid, revealing a new mode of protein synthesis inhibition. In eukaryotic cells, argyrin B was found to target mitochondrial elongation factor G1 (EF-G1), the closest homologue of bacterial EF-G. By blocking mitochondrial translation, argyrin B depletes electron transport components and inhibits the growth of yeast and tumor cells. Further supporting direct inhibition of EF-G1, expression of an argyrin B-binding deficient EF-G1 L693Q variant partially rescued argyrin B-sensitivity in tumor cells. In summary, we show that argyrin B is an antibacterial and cytotoxic agent that inhibits the evolutionarily conserved target EF-G, blocking protein synthesis in bacteria and mitochondrial translation in yeast and mammalian cells.
- Published
- 2012
32. Bowel resection for iatrogenic parasitic fibroids with preoperative investigations suggestive of malignancy
- Author
-
Gregory M. Cario, Philippa Gale, Thomas Aust, and Gregory Robertson
- Subjects
Adult ,medicine.medical_specialty ,Colon ,medicine.medical_treatment ,Iatrogenic Disease ,Malignancy ,Laparotomy ,Preoperative Care ,medicine ,Humans ,Rectosigmoid resection ,Intestinal Diseases, Parasitic ,Lymph node ,Adenomyoma ,Leiomyoma ,business.industry ,Primary anastomosis ,Obstetrics and Gynecology ,Bowel resection ,medicine.disease ,female genital diseases and pregnancy complications ,Surgery ,Dissection ,medicine.anatomical_structure ,Reproductive Medicine ,Female ,business - Abstract
Objective To describe a case in which a midline laparotomy for two presumed malignant masses instead revealed parasitic fibroids. Design Case report. Setting Tertiary-level private hospital. Patient(s) Woman with 7- and 13-cm abdominopelvic masses 3 years after a total laparoscopic hysterectomy for fibroids. Intervention(s) Midline laparotomy, bilateral salpingooophorectomy, infracolic omentectomy, appendicectomy, para-aortic lymph node dissection, and high rectosigmoid resection with primary anastomosis. Main Outcome Measure(s) Histology of masses showed adenomyoma. Result(s) There was no evidence of malignancy. Conclusion(s) Morcellation of the fibroids during a total laparoscopic hysterectomy likely left fragments that formed iatrogenic parasitic fibroids, which led to the subsequent laparotomy and bowel resection for potential malignancy.
- Published
- 2011
33. Anterior approach to laparoscopic uterine artery ligation
- Author
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Lionel Reyftmann, D. Rosen, Thomas Aust, Danny Chou, and Gregory M. Cario
- Subjects
Adult ,medicine.medical_specialty ,medicine.medical_treatment ,Laparoscopic myomectomy ,Hysterectomy ,Ureter ,Laparotomy ,medicine.artery ,Occlusion ,Medicine ,Humans ,Uterine artery ,Ligation ,Leiomyoma ,business.industry ,Obstetrics and Gynecology ,Surgery ,Uterine Artery ,medicine.anatomical_structure ,Treatment Outcome ,Uterine Neoplasms ,Myometrium ,Female ,Laparoscopy ,Anterior approach ,business - Abstract
Herein is described an anterior approach to uterine artery ligation during laparoscopic myomectomy and total laparoscopic hysterectomy. The anterior leaf of the broad ligament is opened and the uterine artery is clipped lateral to its crossing over the ureter. Outcome measures were completion of the procedure laparoscopically and the need for transfusion postoperatively. Thirty-eight myomectomies and 28 difficult total laparoscopic hysterectomies (primarily uteri with large myomas) were performed, with 1 conversion to laparotomy during myomectomy and 1 during hysterectomy, and 1 transfusion after total laparoscopic hysterectomy. The anterior approach to uterine artery ligation is an alternative method for treatment of uterine artery occlusion during laparoscopic myomectomy or hysterectomy performed to treat large myomas.
- Published
- 2011
34. Qui chante? The Lyric’s Voice as Impersonation
- Author
-
Thomas Austenfeld
- Subjects
lyric ,song ,performance ,voicing ,diotima ,ventriloquism ,impersonation ,charm ,Language and Literature - Abstract
Starting from the imperative to not just read, but to speak lyric poems out loud, this paper considers ways in which poems change depending on who utters them. Beyond the familiar distinction between the poem's author and the lyrical “I” — the voice in which the poet chooses to utter the poem — any performer who speaks a poem also impersonates the text. Reading is the first act of interpretation; others follow. Sound is an indispensable constitutive aspect of the lyric poem, too often neglected. Each reading of a poem can turn into a momentary ec-stasis.
- Published
- 2021
- Full Text
- View/download PDF
35. A randomized controlled clinical trial of 2295 ultrasound-guided embryo transfers
- Author
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Andrew J. Drakeley, Andrea L. Jorgensen, Paula R Williamson, Thomas Aust, John Sklavounos, Rafet Gazvani, and Charles R. Kingsland
- Subjects
Adult ,medicine.medical_specialty ,Pregnancy Rate ,media_common.quotation_subject ,Fertility ,Sensitivity and Specificity ,law.invention ,Randomized controlled trial ,law ,Pregnancy ,Abdomen ,Freezing ,medicine ,Humans ,media_common ,Ultrasonography ,Intention-to-treat analysis ,Obstetrics ,business.industry ,Rehabilitation ,Pregnancy Outcome ,Obstetrics and Gynecology ,medicine.disease ,Embryo Transfer ,Embryo transfer ,Clinical trial ,Pregnancy rate ,Reproductive Medicine ,Female ,business ,Live birth - Abstract
BACKGROUND: We wanted to test the hypothesis that using abdominal ultrasound at the time of embryo transfer to guide replacement, improved pregnancy rates by at least 5%. METHODS: An RCT in a large assisted conception unit. A pilot study and power calculation suggested that at least 2000 embryo transfers were required to demonstrate a difference of 5%, for a test with 80% power and Type 1 error 0.05. Randomization, data entry and analysis were arranged independently. Randomization was stratified for age and fresh/frozen embryo transfer. Analysis was by intention to treat. RESULTS: There was no difference in clinical pregnancy or live birth rates between the two groups. The clinical pregnancy rate for ultrasound-guided embryo transfer was 22% and for non-ultrasoundguided embryo transfer was 23% (odds ratio: 0.96; 95% confidence interval: 0.79‐1.18). CONCLUSIONS: We set out to determine whether ultrasound-guided embryo transfer improved clinical pregnancy rates and live birth rates in assisted conception. We used an appropriately powered RCT design. We did not demonstrate a difference. This outcome is at odds with the UKs National Institute of Clinical Excellence recommendations for fertility treatment (Fertility Assessment and Treatment for People with Fertility Problems. London, UK: RCOG Press, 2004, 112.) which used a meta-analysis of four smaller trials (range 362‐800 patients, totalling 2051 embryo transfers) to conclude that ultrasound should be offered. We suggest that the current Cochrane review should be updated with data from our trial and recommend that consideration is given to accounting for heterogeneity between the included trials.
- Published
- 2008
36. Retrograde ejaculation and male infertility
- Author
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D. Iwan Lewis-Jones and Thomas Aust
- Subjects
Retrograde ejaculation ,Infertility ,Male ,endocrine system ,medicine.medical_specialty ,education ,Urology ,Semen ,Urine ,urologic and male genital diseases ,Male infertility ,Urethral Diseases ,medicine ,Humans ,Ejaculation ,Infertility, Male ,Normal ejaculation ,General Veterinary ,urogenital system ,business.industry ,Urethral sphincter ,food and beverages ,Hydrogen-Ion Concentration ,medicine.disease ,Sperm Retrieval ,business - Abstract
Incompetence of the internal urethral sphincter causes semen to pass into the bladder. Infertility can be successfully treated by restoring normal ejaculation or by sperm retrieval techniques.
- Published
- 2004
37. A yeast t-SNARE involved in endocytosis
- Author
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Howard Riezman, Ginette Devilliers, Olivia W. Rossanese, Ville Tieaho, Cristina Prescianotto-Baschong, Sirkka Keränen, Philippe Guillaud, Karin Séron, Rosine Haguenauer-Tsapis, Marie-Odile Blondel, Benjamin S. Glick, and Thomas Aust
- Subjects
Vacuolar Proton-Translocating ATPases ,Saccharomyces cerevisiae Proteins ,Protein family ,Recombinant Fusion Proteins ,Molecular Sequence Data ,Saccharomyces cerevisiae ,Endocytosis ,Article ,Fungal Proteins ,Open Reading Frames ,Guanine Nucleotide Exchange Factors ,Syntaxin ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Organelles ,Fungal protein ,Sequence Homology, Amino Acid ,biology ,Qa-SNARE Proteins ,Membrane transport protein ,Membrane Proteins ,Membrane Transport Proteins ,Cell Biology ,biology.organism_classification ,Kinetics ,Proton-Translocating ATPases ,Open reading frame ,Biochemistry ,Membrane protein ,Nucleotide Transport Proteins ,biology.protein ,Chromosomes, Fungal ,Mating Factor ,Peptides ,Sequence Alignment ,Gene Deletion - Abstract
The ORF YOL018c (TLG2) of Saccharomyces cerevisiae encodes a protein that belongs to the syntaxin protein family. The proteins of this family, t-SNAREs, are present on target organelles and are thought to participate in the specific interaction between vesicles and acceptor membranes in intracellular membrane trafficking. TLG2 is not an essential gene, and its deletion does not cause defects in the secretory pathway. However, its deletion in cells lacking the vacuolar ATPase subunit Vma2p leads to loss of viability, suggesting that Tlg2p is involved in endocytosis. In tlg2Delta cells, internalization was normal for two endocytic markers, the pheromone alpha-factor and the plasma membrane uracil permease. In contrast, degradation of alpha-factor and uracil permease was delayed in tlg2Delta cells. Internalization of positively charged Nanogold shows that the endocytic pathway is perturbed in the mutant, which accumulates Nanogold in primary endocytic vesicles and shows a greatly reduced complement of early endosomes. These results strongly suggest that Tlg2p is a t-SNARE involved in early endosome biogenesis.
- Published
- 1998
38. A potential new use for gonadotropin-releasing hormone antagonists
- Author
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Rafet Gazvani, Charles R. Kingsland, John Sklavounos, and Thomas Aust
- Subjects
Adult ,Male ,endocrine system ,medicine.medical_specialty ,medicine.medical_treatment ,Twins ,Fertilization in Vitro ,Gonadotropin-releasing hormone ,Biology ,Buserelin ,Intracytoplasmic sperm injection ,Gonadotropin-Releasing Hormone ,Andrology ,Pregnancy ,Internal medicine ,medicine ,Humans ,Sperm Injections, Intracytoplasmic ,Twin Pregnancy ,In vitro fertilisation ,Antagonist ,Obstetrics and Gynecology ,Luteinizing Hormone ,Embryo Transfer ,Oocyte ,Endocrinology ,medicine.anatomical_structure ,Reproductive Medicine ,Accidents ,Oocytes ,Tissue and Organ Harvesting ,Patient Compliance ,Female ,Pregnancy, Multiple ,Luteinizing hormone ,hormones, hormone substitutes, and hormone antagonists ,Hormone - Abstract
Objective To describe a potential new use of gonadotropin-releasing hormone (GnRH) antagonists. Design Case report. Setting Assisted conception unit at a teaching hospital in the United Kingdom. Patient(s) A 37-year-old woman undergoing in vitro fertilization (IVF) who accidentally stopped using GnRH agonists after starting ovarian stimulation. Intervention(s) A GnRH antagonist was used to avoid a luteinizing hormone (LH) surge and hence "rescue" the cycle. Result(s) Successful oocyte retrieval was carried out, two embryos transferred, and a viable twin pregnancy ensued. Conclusion(s) This may be a new indication for the use of GnRH antagonists.
- Published
- 2003
39. The podiatric surgery theatre environment in the UK; is it conducive to learning? A quantitative study using the surgical theatre educational environment measure (STEEM)
- Author
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Thomas Austen and Simon Otter
- Subjects
Podiatric surgery ,Surgical theatre educational environment ,Podiatric surgery teaching and learning ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background In 2015 the Health and Care Professions Council (HCPC) reported that annotation of the register for podiatric surgery would improve the way in which risks are currently managed. The academic institutions provide the teaching environment for the ‘learnt’ Diploma in principles of podiatric surgery however the podiatric surgery departments facilitate the production of the next generation of podiatric surgeons. This research aimed to identify the major elements that contribute to the educational environment, and find and utilise a valid assessment tool which could identify discrete areas to be targeted for improvement as well as being used for monitoring of the environment. Methods A quantitative study using the Surgical Theatre Educational Environment Measure (STEEM) via an online tool was utilised for podiatrists working within podiatric surgery, podiatric surgical trainees and podiatric surgeons working towards the Certificate of Completion of Podiatric Surgery Training (CCPST) with a view to assessing the educational environment within the podiatric surgical theatre in the UK. Results 16/33 responses with a response rate of 48.4% the overall STEEM mean score was 122/160. Four subscales included teaching and training, learning opportunities, atmosphere, and workload/supervision/support were measured. The overall mean score of 76.73% suggests the learning environment may be considered satisfactory; however, areas for potential improvement are identifiable. Results reveal strengths such as a non-discriminatory surgical theatre atmosphere on racial grounds. Conclusions Perception was of a very satisfactory ‘Atmosphere’ within the theatre environment and a very satisfactory ‘opportunity to assist’ within the podiatric surgery theatre environment. The STEEM has potential to be applied further as a quality assessment tool whose results could be used to demonstrate part of the HCPC standards.
- Published
- 2019
- Full Text
- View/download PDF
40. Situating a Non-Conformist Auteur
- Author
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Thomas Austin
- Subjects
Pedro Costa ,Digital video ,Aesthetics ,Politics ,Race ,Class ,Fine Arts ,Arts in general ,NX1-820 - Abstract
This review of Nuno Barradas Jorge’s monograph The Films of Pedro Costa welcomes its detailed account of hitherto neglected dimensions of Costa’s work, such as funding, relations with producers, technological aspects of production and postproduction, and the promotional labour of Costa’s media interviews. But it argues that these undoubtedly useful insights come at the expense of sustained close attention to Costa’s striking imagery and use of sound. The most glaring absences in the book are those of racial and class politics, and hence the interface between the two. Jorge’s book is an important contextual study of Costa’s oeuvre, but the immense aesthetic and political power of this filmmaking (both texts and collaborative processes of production) still eludes his grasp.
- Published
- 2020
- Full Text
- View/download PDF
41. A yeast T-snare involved in endocytosis
- Author
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Marie-Odile Blondel, Cristina Prescianotto-Baschong, Thomas Aust, Karin Séron, Howard Riezman, Philippe Guillaud, Sirkka Keränen, Rosine Haguenauer-Tsapis, Ville Tieaho, and Ginette Devilliers
- Subjects
Cell Biology ,General Medicine ,Biology ,Endocytosis ,Yeast ,Cell biology - Published
- 1998
42. Metallographic Observations on Corrosion of Dilute Al-Sn Alloys in HCI Acid / Metallographische Korrosionsuntersuchungen an Al-Sn-Legierungen mit geringem Sn-Gehalt in Salzsäure
- Author
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Karl Thomas Aust, Henry Unglik, and Ursula Martius Franklin
- Subjects
Materials science ,Mechanics of Materials ,Metallurgy ,Metals and Alloys ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Corrosion - Published
- 1978
43. A Method for Three-Dimensional Studies of Sintered Compacts / Verfahren für die dreidimensionale Untersuchung von Sinterkörpern
- Author
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Reginald L. Eadie, Karl Thomas Aust, George C. Weatherly, and William K. Lee
- Subjects
Materials science ,business.product_category ,Mechanics of Materials ,Metals and Alloys ,Die (manufacturing) ,Composite material ,Condensed Matter Physics ,business ,Electronic, Optical and Magnetic Materials - Published
- 1976
44. Fleeing, Flying, Staying, Leaving: The Persistence of Escape in American Literature
- Author
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Thomas Austenfeld
- Subjects
Language and Literature - Abstract
Il potenziale creativo insito nel doppio significato dei verbi inglesi to flee/to fly (i quali denotano tanto la fuga quanto il movimento aereo) è illustrato nei testi canonici della letteratura americana sulla fuga. Oltre alla sua accezione più classica, in questi testi la fuga è spesso intesa come abbandono o partenza mancata. Tali declinazioni della fuga presentano variazioni legate ai ruoli di genere che sono perfettamente illustrate all’interno del romanzo Flight Behavior di Barbara Kingsolver (2012). Quest’opera ricapitola il polimorfismo della fuga nella letteratura americana e ne allarga gli orizzonti di significato fino ad includere la questione del riscaldamento globale.
- Published
- 2014
45. End4p/Sla2p interacts with actin-associated proteins for endocytosis in Saccharomyces cerevisiae
- Author
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Ruben Lombardi, Howard Riezman, Linda A Hicke, Jan Paleček, A. Wesp, Alan L. Munn, and Thomas Aust
- Subjects
Saccharomyces cerevisiae Proteins ,Recombinant Fusion Proteins ,Endocytic cycle ,Molecular Sequence Data ,Cell Cycle Proteins ,macromolecular substances ,Saccharomyces cerevisiae ,Biology ,Endocytosis ,SH3 domain ,Article ,Fungal Proteins ,Drosophila Proteins ,Amino Acid Sequence ,Cloning, Molecular ,Cytoskeleton ,Molecular Biology ,Actin ,Adaptor Proteins, Signal Transducing ,Sequence Deletion ,Microfilament Proteins ,Temperature ,Cortical actin cytoskeleton ,Cell Biology ,Receptor-mediated endocytosis ,Huntingtin-interacting protein 1 ,Actins ,Cell biology ,Protein Structure, Tertiary ,DNA-Binding Proteins ,Molecular Weight ,Cytoskeletal Proteins ,Phenotype ,Schizosaccharomyces pombe Proteins ,Carrier Proteins ,Peptides ,Transcription Factors - Abstract
end4–1 was isolated as a temperature-sensitive endocytosis mutant. We cloned and sequenced END4 and found that it is identical to SLA2/MOP2. This gene is required for growth at high temperature, viability in the absence of Abp1p, polarization of the cortical actin cytoskeleton, and endocytosis. We used a mutational analysis of END4 to correlate in vivo functions with regions of End4p and we found that two regions of End4p participate in endocytosis but that the talin-like domain of End4p is dispensable. The N-terminal domain of End4p is required for growth at high temperature, endocytosis, and actin organization. A central coiled-coil domain of End4p is necessary for formation of a soluble sedimentable complex. Furthermore, this domain has an endocytic function that is redundant with the function(s) of ABP1 and SRV2. The endocytic function of Abp1p depends on its SH3 domain. In addition we have isolated a recessive negative allele of SRV2 that is defective for endocytosis. Combined biochemical, functional, and genetic analysis lead us to propose that End4p may mediate endocytosis through interaction with other actin-associated proteins, perhaps Rvs167p, a protein essential for endocytosis.
46. Reply to Brereton
- Author
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Martin Barker and Thomas Austin
- Subjects
Motion pictures ,PN1993-1999 ,Philosophy (General) ,B1-5802 - Published
- 2000
- Full Text
- View/download PDF
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