1,057 results on '"Thomas, J. S."'
Search Results
2. Understanding the role of imidazolium-based ionic liquids in the electrochemical CO2 reduction reaction
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Fortunati, Alessia, Risplendi, Francesca, Re Fiorentin, Michele, Cicero, Giancarlo, Parisi, Emmanuele, Castellino, Micaela, Simone, Elena, Iliev, Boyan, Schubert, Thomas J. S., Russo, Nunzio, and Hernández, Simelys
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- 2023
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3. Neutron-hole strength in N = 81 nuclei
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Howard, A. M., Freeman, S. J., Sharp, D. K., Bloxham, T., Clark, J. A., Deibel, C. M., Kay, B. P., Parker, P. D., Schiffer, J. P., and Thomas, J. S.
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Nuclear Experiment - Abstract
A systematic study of neutron-hole strength in the N = 81 nuclei 137Ba, 139Ce, 141Nd and 143Sm is reported. The single-neutron removal reactions (p,d) and (3He,4He) were measured at energies of 23 and 34 MeV, respectively. Spectroscopic factors were extracted from measured cross sections through a distorted-wave Born approximation analysis and centroids of single-particle strength have been established. The change in these centroid energies as a function of proton number have been compared to calculations of the monopole shift for the s1/2 and h11/2 orbitals, where the majority of the strength has been observed. Significant fragmentation of strength was observed for the d and g7/2 orbitals, particularly for the latter orbital which is deeply bound, with summed strengths that indicate a significant amount lies outside of the measured excitation energy range.
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- 2020
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4. Understanding the role of imidazolium-based ionic liquids in the electrochemical CO2 reduction reaction
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Alessia Fortunati, Francesca Risplendi, Michele Re Fiorentin, Giancarlo Cicero, Emmanuele Parisi, Micaela Castellino, Elena Simone, Boyan Iliev, Thomas J. S. Schubert, Nunzio Russo, and Simelys Hernández
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Chemistry ,QD1-999 - Abstract
Abstract The development of efficient CO2 capture and utilization technologies driven by renewable energy sources is mandatory to reduce the impact of climate change. Herein, seven imidazolium-based ionic liquids (ILs) with different anions and cations were tested as catholytes for the CO2 electrocatalytic reduction to CO over Ag electrode. Relevant activity and stability, but different selectivities for CO2 reduction or the side H2 evolution were observed. Density functional theory results show that depending on the IL anions the CO2 is captured or converted. Acetate anions (being strong Lewis bases) enhance CO2 capture and H2 evolution, while fluorinated anions (being weaker Lewis bases) favour the CO2 electroreduction. Differently from the hydrolytically unstable 1-butyl-3-methylimidazolium tetrafluoroborate, 1-Butyl-3-Methylimidazolium Triflate was the most promising IL, showing the highest Faradaic efficiency to CO (>95%), and up to 8 h of stable operation at high current rates (−20 mA & −60 mA), which opens the way for a prospective process scale-up.
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- 2023
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5. $s$-wave scattering lengths for the $^7$Be+p system from an $\textit{R}$-matrix analysis
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Paneru, S. N., Brune, C. R., Giri, R., Livesay, R. J., Greife, U., Blackmon, J. C., Bardayan, D. W., Chipps, K. A., Davids, B., Connolly, D. S., Chae, K. Y., Champagne, A. E., Deibel, C., Jones, K. L., Johnson, M. S., Kozub, R. L., Ma, Z., Nesaraja, C. D., Pain, S. D., Sarazin, F., Shriner Jr., J. F., Stracener, D. W., Smith, M. S., Thomas, J. S., Visser, D. W., and Wrede, C.
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Nuclear Experiment ,Astrophysics - Solar and Stellar Astrophysics ,Nuclear Theory - Abstract
The astrophysical $S$-factor for the radiative proton capture reaction on $^7$Be ($S_{17}$) at low energies is affected by the $s$-wave scattering lengths. We report the measurement of elastic and inelastic scattering cross sections for the $^7$Be+p system in the center-of-mass energy range 0.474 - 2.740 MeV and center-of-mass angular range of 70$^\circ$- 150$^\circ$. A radioactive $^7$Be beam produced at Oak Ridge National Laboratory's (ORNL) Holifield Radioactive Ion Beam Facility was accelerated and bombarded a thin polypropylene (CH$_{2}$)$_\text n$ target. Scattered ions were detected in the segmented Silicon Detector Array. Using an $\textit{R}$-matrix analysis of ORNL and Louvain-la-Neuve cross section data, the $s$-wave scattering lengths for channel spins 1 and 2 were determined to be 17.34$^{+1.11}_{-1.33}$ and -3.18$^{+0.55}_{-0.50}$ fm, respectively. The uncertainty in the $s$-wave scattering lengths reported in this work is smaller by a factor of 5-8 compared to the previous measurement, which may reduce the overall uncertainty in $S_{17}$ at zero energy. The level structure of $^8$B is discussed based upon the results from this work. Evidence for the existence of 0$^+$ and 2$^+$ levels in $^8$B at 1.9 and 2.21 MeV, respectively, is observed.
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- 2019
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6. Re-examining the transition into the N=20 island of inversion: structure of $^{30}$Mg
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Fernández-Domínguez, B., Pietras, B., Catford, W. N., Orr, N. A., Petri, M., Chartier, M., Paschalis, S., Patterson, N., Thomas, J . S., Caamaño, M., Otsuka, T., Poves, A., Tsunoda, N., Achouri, N. L., Angélique, J-C., Ashwood, N. I., Banu, A ., Bastin, B., Borcea, R., Brown, J., Delaunay, F., Franchoo, S., Freer, M., Gaudefroy, L., Heil, S., Labiche, M., Laurent, B., Lemmon, R. C., Macchiavelli, A. O., Negoita, F., Paul, E. S., Rodríguez-Tajes, C., Roussel-Chomaz, P., Staniou, M., Taylor, M. J., Trache, L., and Wilson, G. L.
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Nuclear Experiment ,Nuclear Theory - Abstract
Intermediate energy single-neutron removal from $^{31}$Mg has been employed to investigate the transition into the N=20 island of inversion. Levels up to 5~MeV excitation energy in $^{30}$Mg were populated and spin-parity assignments were inferred from the corresponding longitudinal momentum distributions and $\gamma$-ray decay scheme. Comparison with eikonal-model calculations also permitted spectroscopic factors to be deduced. Surprisingly, the 0$^{+}_{2}$ level in $^{30}$Mg was found to have a strength much weaker than expected in the conventional picture of a predominantly $2p - 2h$ intruder configuration having a large overlap with the deformed $^{31}$Mg ground state. In addition, negative parity levels were identified for the first time in $^{30}$Mg, one of which is located at low excitation energy. The results are discussed in the light of shell-model calculations employing two newly developed approaches with markedly different descriptions of the structure of $^{30}$Mg. It is concluded that the cross-shell effects in the region of the island of inversion at Z=12 are considerably more complex than previously thought and that $np - nh$ configurations play a major role in the structure of $^{30}$Mg., Comment: Physics Letters B, Volume 779, 10 April 2018, Pages 124-129
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- 2018
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7. An experimental study of the rearrangements of valence protons and neutrons amongst single-particle orbits during double {\beta} decay in 100Mo
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Freeman, S. J., Sharp, D. K., McAllister, S. A., Kay, B. P., Deibel, C. M., Faestermann, T., Hertenberger, R., Mitchell, A. J., Schiffer, J. P., Szwec, S. V., Thomas, J. S., and Wirth, H. -F.
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Nuclear Experiment - Abstract
The rearrangements of protons and neutrons amongst the valence single-particle orbitals during double {\beta} decay of 100Mo have been determined by measuring cross sections in (d,p), (p,d), (3He,{\alpha}) and (3He,d) reactions on 98,100Mo and 100,102Ru targets. The deduced nucleon occupancies reveal significant discrepancies when compared with theoretical calculations; the same calculations have previously been used to determine the nuclear matrix element associated with the decay probability of double {\beta} decay of the 100Mo system., Comment: 18 pages, 13 figures, 37 pages of supplemental information
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- 2017
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8. Automated Modal Parameter Estimation Using Correlation Analysis and Bootstrap Sampling
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Yaghoubi, Vahid, Vakilzadeh, Majid K., and Abrahamsson, Thomas J. S.
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Statistics - Applications - Abstract
The estimation of modal parameters from a set of noisy measured data is a highly judgmental task, with user expertise playing a significant role in distinguishing between estimated physical and noise modes of a test-piece. Various methods have been developed to automate this procedure. The common approach is to identify models with different orders and cluster similar modes together. However, most proposed methods based on this approach suffer from high-dimensional optimization problems in either the estimation or clustering step. To overcome this problem, this study presents an algorithm for autonomous modal parameter estimation in which the only required optimization is performed in a three-dimensional space. To this end, a subspace-based identification method is employed for the estimation and a non-iterative correlation-based method is used for the clustering. This clustering is at the heart of the paper. The keys to success are correlation metrics that are able to treat the problems of spatial eigenvector aliasing and nonunique eigenvectors of coalescent modes simultaneously. The algorithm commences by the identification of an excessively high-order model from frequency response function test data. The high number of modes of this model provide bases for two subspaces: one for likely physical modes and one for its complement dubbed the subspace of noise modes. By employing the bootstrap resampling technique, several subsets are generated from the same basic dataset and for each of them a model is identified to form a set of models. Then, by correlation analysis, highly correlated modes of these models which appear repeatedly are clustered together and the noise modes are collected in a so-called Trashbox cluster. Stray noise modes attracted to the mode clusters are trimmed away by correlation analysis. The final step is a fuzzy c-means clustering procedure.
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- 2017
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9. Commercial Production of Ionic Liquids
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Schubert, Thomas J. S., He, Liang-Nian, Series Editor, Tundo, Pietro, Series Editor, Zhang, Z. Conrad, Series Editor, and Shiflett, Mark B., editor
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- 2020
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10. A primer for quantum computing and its applications to healthcare and biomedical research.
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Durant, Thomas J S, Knight, Elizabeth, Nelson, Brent, Dudgeon, Sarah, Lee, Seung J, Walliman, Dominic, Young, Hobart P, Ohno-Machado, Lucila, and Schulz, Wade L
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Objectives To introduce quantum computing technologies as a tool for biomedical research and highlight future applications within healthcare, focusing on its capabilities, benefits, and limitations. Target Audience Investigators seeking to explore quantum computing and create quantum-based applications for healthcare and biomedical research. Scope Quantum computing requires specialized hardware, known as quantum processing units, that use quantum bits (qubits) instead of classical bits to perform computations. This article will cover (1) proposed applications where quantum computing offers advantages to classical computing in biomedicine; (2) an introduction to how quantum computers operate, tailored for biomedical researchers; (3) recent progress that has expanded access to quantum computing; and (4) challenges, opportunities, and proposed solutions to integrate quantum computing in biomedical applications. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Biomarkers vs Machines: The Race to Predict Acute Kidney Injury.
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Ghazi, Lama, Farhat, Kassem, Hoenig, Melanie P, Durant, Thomas J S, and El-Khoury, Joe M
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- 2024
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12. Residual States for Modal Models Identified from Accelerance Data
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Gibanica, Mladen, Abrahamsson, Thomas J. S., Allemang, Randall J., Zimmerman, Kristin B., Series Editor, Mains, Michael, editor, and Dilworth, Brandon J., editor
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- 2019
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13. Retrospective evaluation of clinical decision support for within-laboratory optimization of SARS-CoV-2 NAAT workflow
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Durant, Thomas J. S., primary and Peaper, David R., additional
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- 2024
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14. Structure of $^{13}$Be probed via secondary beam reactions
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Randisi, G., Leprince, A., Falou, H. Al, Orr, N. A., Marqués, F. M., Achouri, N. L., Angélique, J. -C., Ashwood, N., Bastin, B., Bloxham, T., Brown, B. A., Catford, W. N., Curtis, N., Delaunay, F., Freer, M., Brennand, E. de Góes, Haigh, P., Hanappe, F., Harlin, C., Laurent, B., Lecouey, J. -L., Ninane, A., Patterson, N., Price, D., Stuttgé, L., and Thomas, J. S.
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Nuclear Experiment - Abstract
The low-lying level structure of the unbound neutron-rich nucleus $^{13}$Be has been investigated via breakup on a carbon target of secondary beams of $^{14,15}$B at 35 MeV/nucleon. The coincident detection of the beam velocity $^{12}$Be fragments and neutrons permitted the invariant mass of the $^{12}$Be+$n$ and $^{12}$Be+$n$+$n$ systems to be reconstructed. In the case of the breakup of $^{15}$B, a very narrow structure at threshold was observed in the $^{12}$Be+$n$ channel. Contrary to earlier stable beam fragmentation studies which identified this as a strongly interacting $s$-wave virtual state in $^{13}$Be, analysis here of the $^{12}$Be+$n$+$n$ events demonstrated that this was an artifact resulting from the sequential-decay of the $^{14}$Be(2$^+$) state. Single-proton removal from $^{14}$B was found to populate a broad low-lying structure some 0.70 MeV above the neutron-decay threshold in addition to a less prominent feature at around 2.4 MeV. Based on the selectivity of the reaction and a comparison with (0-3)$\hbar\omega$ shell-model calculations, the low-lying structure is concluded to most probably arise from closely spaced J$^\pi$=1/2$^+$ and 5/2$^+$ resonances (E$_r$=0.40$\pm$0.03 and 0.85$^{+0.15}_{-0.11}$ MeV), whilst the broad higher-lying feature is a second 5/2$^+$ level (E$_r$=2.35$\pm$0.14 MeV). Taken in conjunction with earlier studies, it would appear that the lowest 1/2$^+$ and 1/2$^-$ levels lie relatively close together below 1 MeV., Comment: 14 pages, 13 figures, 2 tables. Accepted for publication in Physical Review C
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- 2013
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15. Model Updating of Multiple Nominally Identical Car Components
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Gibanica, Mladen, Abrahamsson, Thomas J. S., and Olsson, Magnus
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- 2020
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16. Biological Effects of Single-Nucleotide Polymorphisms in the Drosophila melanogaster Malic Enzyme Locus
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Baath, Simran and Merritt, Thomas J. S.
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- 2020
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17. Neutron pair correlations in A=100 nuclei involved in neutrinoless double-$\beta$ decay
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Thomas, J. S., Freeman, S. J., Deibel, C. M., Faestermann, T., Hertenberger, R., Kay, B. P., McAllister, S. A., Mitchell, A. J., Schiffer, J. P., Sharp, D. K., and Wirth, H. F.
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Nuclear Experiment - Abstract
The pairing properties of the neutrinoless double beta decay $(0\nu2\beta)$ candidate $^{100}$Mo have been studied, along with its daughter $^{100}$Ru, to provide input for nuclear matrix element calculations relevant to the decay. The $(p,t)$ two-neutron transfer reaction was measured on nuclei of $^{102,100}$Ru and $^{100,98}$Mo. The experiment was designed to have particular sensitivity to $0^{+}$ states up to excitation energies of $\sim 3$ MeV with high energy resolution. Measurements were made at two angles and L=0 transitions identified by the ratio of yields between the two angles. For the reactions leading to and from $^{100}$Ru, greater than 95% of the L=0 $(p,t)$ strength was in the ground state, but in $^{100}$Mo about 20% was in excited $0^{+}$ states. The measured $(p,t)$ data, together with existing $(t,p)$ data, suggest that $^{100}$Mo is a shape-transitional nucleus while $^{100}$Ru is closer to the spherical side of that transition. Theoretical calculations of the $0\nu2\beta$ nuclear matrix element may be complicated by this difference in shape., Comment: 5 pages, 2 figures
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- 2012
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18. Direct reaction measurements with a 132Sn radioactive ion beam
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Jones, K. L., Adekola, A. S., Bardayan, D. W., Blackmon, J. C., Chae, K. Y., Chipps, K. A., Cizewski, J. A., Erikson, L., Harlin, C., Hatarik, R., Kapler, R., Kozub, R. L., Liang, J. F., Livesay, R., Ma, Z., Moazen, B. H., Nesaraja, C. D., Nunes, F. M., Pain, S. D., Patterson, N. P., Shapira, D., Shriner Jr, J. F., Smith, M. S., Swan, T. P., and Thomas, J. S.
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Nuclear Experiment - Abstract
The (d,p) neutron transfer and (d,d) elastic scattering reactions were measured in inverse kinematics using a radioactive ion beam of 132Sn at 630 MeV. The elastic scattering data were taken in a region where Rutherford scattering dominated the reaction, and nuclear effects account for less than 8% of the cross section. The magnitude of the nuclear effects was found to be independent of the optical potential used, allowing the transfer data to be normalized in a reliable manner. The neutron-transfer reaction populated a previously unmeasured state at 1363 keV, which is most likely the single-particle 3p1/2 state expected above the N=82 shell closure. The data were analyzed using finite range adiabatic wave calculations and the results compared with the previous analysis using the distorted wave Born approximation. Angular distributions for the ground and first excited states are consistent with the previous tentative spin and parity assignments. Spectroscopic factors extracted from the differential cross sections are similar to those found for the one neutron states beyond the benchmark doubly-magic nucleus 208Pb., Comment: 22 pages, 7 figures
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- 2011
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19. Emergence of the N=16 shell gap in 21O
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Fernandez-Dominguez, B., Thomas, J. S., Catford, W. N., Delaunay, F., Brown, S. M., Orr, N. A., Rejmund, M., Achouri, N. L., Falou, H. Al, Ashwood, N. A., Beaumel, D., Blumenfeld, Y., Brown, B. A., Chapman, R., Chartier, M., Curtis, N., Force, C., de France, G., Franchoo, S., Guillot, J., Haigh, P., Hammache, F., Labiche, M., Lapoux, V., Lemmon, R. C., Marechal, F., Moro, A., Martin, B., Mougeot, X., Mouginot, B., Nalpas, L., Navin, A., Patterson, N., Pietras, B., Pollacco, E. C., Leprince, A., Ramus, A., Scarpaci, J. A., de Séréville, N., Stefan, I., Sorlin, O., and Wilson, G.
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Nuclear Experiment - Abstract
The spectroscopy of 21O has been investigated using a radioactive 20O beam and the (d,p) reaction in inverse kinematics. The ground and first excited states have been determined to be Jpi=5/2+ and Jpi=1/2+ respectively. Two neutron unbound states were observed at excitation energies of 4.76 +- 0.10 and 6.16 +- 0.11. The spectroscopic factor deduced for the lower of these interpreted as a 3/2+ level, reveals a rather pure 0d3/2 single-particle configuration. The large energy difference between the 3/2+ and 1/2+ states is indicative of the emergence of the N=16 magic number. For the higher lying resonance, which has a character consistent with a spin-parity assignment of 3/2+ or 7/2-, a 71% branching ratio to the first 2+ state in 20O has been observed. The results are compared with new shell model calculations., Comment: 5 pages, 2 figures
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- 2010
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20. The magic nature of 132Sn explored through the single-particle states of 133Sn
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Jones, K. L., Adekola, A. S., Bardayan, D. W., Blackmon, J. C., Chae, K. Y., Chipps, K. A., Cizewski, J. A., Erikson, L., Harlin, C., Hatarik, R., Kapler, R., Kozub, R. L., Liang, J. F., Livesay, R., Ma, Z., Moazen, B. H., Nesaraja, C. D., Nunes, F. M., Pain, S. D., Patterson, N. P., Shapira, D., Shriner Jr, J. F., Smith, M. S., Swan, T. P., and Thomas, J. S.
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Nuclear Experiment - Abstract
Atomic nuclei have a shell structure where nuclei with 'magic numbers' of neutrons and protons are analogous to the noble gases in atomic physics. Only ten nuclei with the standard magic numbers of both neutrons and protons have so far been observed. The nuclear shell model is founded on the precept that neutrons and protons can move as independent particles in orbitals with discrete quantum numbers, subject to a mean field generated by all the other nucleons. Knowledge of the properties of single-particle states outside nuclear shell closures in exotic nuclei is important for a fundamental understanding of nuclear structure and nucleosynthesis (for example the r-process, which is responsible for the production of about half of the heavy elements). However, as a result of their short lifetimes, there is a paucity of knowledge about the nature of single-particle states outside exotic doubly magic nuclei. Here we measure the single-particle character of the levels in 133Sn that lie outside the double shell closure present at the short-lived nucleus 132Sn. We use an inverse kinematics technique that involves the transfer of a single nucleon to the nucleus. The purity of the measured single-particle states clearly illustrates the magic nature of 132Sn., Comment: 19 pages, 5 figures and 4 tables
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- 2010
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21. Data Analytics in Clinical Laboratories: Advancing Diagnostic Medicine in the Digital Age
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Merrill, Anna E, primary, Durant, Thomas J S, additional, Baron, Jason, additional, Klutts, J Stacey, additional, Obstfeld, Amrom E, additional, Peaper, David, additional, Stoffel, Michelle, additional, Wheeler, Sarah, additional, and Zaydman, Mark A, additional
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- 2023
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22. Parameter Estimation and Uncertainty Quantification of a Subframe with Mass Loaded Bushings
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Gibanica, Mladen, Abrahamsson, Thomas J. S., Zimmerman, Kristin B., Series editor, Barthorpe, Robert, editor, Platz, Roland, editor, Lopez, Israel, editor, Moaveni, Babak, editor, and Papadimitriou, Costas, editor
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- 2017
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23. Sequential Gauss-Newton MCMC Algorithm for High-Dimensional Bayesian Model Updating
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Vakilzadeh, Majid K., Sjögren, Anders, Johansson, Anders T., Abrahamsson, Thomas J. S., Zimmerman, Kristin B., Series editor, Barthorpe, Robert, editor, Platz, Roland, editor, Lopez, Israel, editor, Moaveni, Babak, editor, and Papadimitriou, Costas, editor
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- 2017
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24. No water, no mating: Connecting dots from behaviour to pathways
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Homica Arya, Regan Toltesi, Michelle Eng, Divita Garg, Thomas J. S. Merritt, and Subhash Rajpurohit
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Medicine ,Science - Abstract
Insects hold considerable ecological and agricultural importance making it vital to understand the factors impacting their reproductive output. Environmental stressors are examples of such factors which have a substantial and significant influence on insect reproductive fitness. Insects are also ectothermic and small in size which makes them even more susceptible to environmental stresses. The present study assesses the consequence of desiccation on the mating latency and copulations duration in tropical Drosophila melanogaster. We tested flies for these reproductive behavioral parameters at varying body water levels and with whole metabolome analysis in order to gain a further understanding of the physiological response to desiccation. Our results showed that the duration of desiccation is positively correlated with mating latency and mating failure, while having no influence on the copulation duration. The metabolomic analysis revealed three biological pathways highly affected by desiccation: starch and sucrose metabolism, galactose metabolism, and phenylalanine, tyrosine and tryptophan biosynthesis. These results are consistent with carbohydrate metabolism providing an energy source in desiccated flies and also suggests that the phenylalanine biosynthesis pathway plays a role in the reproductive fitness of the flies. Desiccation is a common issue with smaller insects, like Drosophila and other tropical insects, and our findings indicate that this lack of ambient water can immediately and drastically affect the insect reproductive behaviour, which becomes more crucial because of unpredictable and dynamic weather conditions.
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- 2021
25. Clinical characteristics and outcomes for 7,995 patients with SARS-CoV-2 infection.
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Jacob McPadden, Frederick Warner, H Patrick Young, Nathan C Hurley, Rebecca A Pulk, Avinainder Singh, Thomas J S Durant, Guannan Gong, Nihar Desai, Adrian Haimovich, Richard Andrew Taylor, Murat Gunel, Charles S Dela Cruz, Shelli F Farhadian, Jonathan Siner, Merceditas Villanueva, Keith Churchwell, Allen Hsiao, Charles J Torre, Eric J Velazquez, Roy S Herbst, Akiko Iwasaki, Albert I Ko, Bobak J Mortazavi, Harlan M Krumholz, and Wade L Schulz
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Medicine ,Science - Abstract
ObjectiveSevere acute respiratory syndrome virus (SARS-CoV-2) has infected millions of people worldwide. Our goal was to identify risk factors associated with admission and disease severity in patients with SARS-CoV-2.DesignThis was an observational, retrospective study based on real-world data for 7,995 patients with SARS-CoV-2 from a clinical data repository.SettingYale New Haven Health (YNHH) is a five-hospital academic health system serving a diverse patient population with community and teaching facilities in both urban and suburban areas.PopulationsThe study included adult patients who had SARS-CoV-2 testing at YNHH between March 1 and April 30, 2020.Main outcome and performance measuresPrimary outcomes were admission and in-hospital mortality for patients with SARS-CoV-2 infection as determined by RT-PCR testing. We also assessed features associated with the need for respiratory support.ResultsOf the 28605 patients tested for SARS-CoV-2, 7995 patients (27.9%) had an infection (median age 52.3 years) and 2154 (26.9%) of these had an associated admission (median age 66.2 years). Of admitted patients, 2152 (99.9%) had a discharge disposition at the end of the study period. Of these, 329 (15.3%) required invasive mechanical ventilation and 305 (14.2%) expired. Increased age and male sex were positively associated with admission and in-hospital mortality (median age 80.7 years), while comorbidities had a much weaker association with the risk of admission or mortality. Black race (OR 1.43, 95%CI 1.14-1.78) and Hispanic ethnicity (OR 1.81, 95%CI 1.50-2.18) were identified as risk factors for admission, but, among discharged patients, age-adjusted in-hospital mortality was not significantly different among racial and ethnic groups.ConclusionsThis observational study identified, among people testing positive for SARS-CoV-2 infection, older age and male sex as the most strongly associated risks for admission and in-hospital mortality in patients with SARS-CoV-2 infection. While minority racial and ethnic groups had increased burden of disease and risk of admission, age-adjusted in-hospital mortality for discharged patients was not significantly different among racial and ethnic groups. Ongoing studies will be needed to continue to evaluate these risks, particularly in the setting of evolving treatment guidelines.
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- 2021
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26. New Constraints on the 18F(p,alpha) 15O Rate in Novae from the (d,p) Reaction
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Kozub, R. L., Bardayan, D. W., Batchelder, J. C., Blackmon, J. C., Brune, C. R., Champagne, A. E., Cizewski, J. A., Davinson, T., Greife, U., Gross, C. J., Jewett, C. C., Livesay, R. J., Ma, Z., Moazen, B. H., Nesaraja, C. D., Sahin, L., Scott, J. P., Shapira, D., Smith, M. S., Thomas, J. S., and Woods, P. J.
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Nuclear Experiment - Abstract
The degree to which the (p,gamma) and (p,alpha) reactions destroy 18F at temperatures 1-4x10^8 K is important for understanding the synthesis of nuclei in nova explosions and for using the long-lived radionuclide 18F, a target of gamma-ray astronomy, as a diagnostic of nova mechanisms. The reactions are dominated by low-lying proton resonances near the 18F+p threshold (E_x=6.411 MeV in 19Ne). To gain further information about these resonances, we have used a radioactive 18F beam from the Holifield Radioactive Ion Beam Facility to selectively populate corresponding mirror states in 19F via the inverse d(18F,p)19F neutron transfer reaction. Neutron spectroscopic factors were measured for states in 19F in the excitation energy range 0-9 MeV. Widths for corresponding proton resonances in 19Ne were calculated using a Woods-Saxon potential. The results imply significantly lower 18F(p,gamma)19Ne and 18F(p,alpha)15O reaction rates than reported previously, thereby increasing the prospect of observing the 511-keV annihilation radiation associated with the decay of 18F in the ashes ejected from novae., Comment: Error involving sum rule was corrected. Proton widths were recalculated using a Woods-Saxon potential. Both low-lying resonances (8- and 38-keV) are now included in the rate band. 12 pages, 4 figures, 1 table. Submitted to Phys. Rev. C
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- 2004
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27. The Single-Particle Structure of Neutron-Rich Nuclei of Astrophysical Interest at the Ornl Hribf
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Bardayan, D. W., Batchelder, J. C., Blackmon, J. C., Brune, C. R., Champagne, A. E., Cizewski, J. A., Davinson, T., Greife, U., James, A. N., Johnson, M., Kozub, R. L., Liang, J. F., Livesay, R. J., Ma, Z., Nesaraja, C. D., Radford, D. C., Shapira, D., Smith, M. S., Thomas, J. S., Woods, P. J., Zganjar, E., and Collaboration, the Unirib
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Nuclear Experiment - Abstract
The rapid nuetron-capture process (r process) produces roughly half of the elements heavier than iron. The path and abundances produced are uncertain, however, because of the lack of nuclear strucure information on important neutron-rich nuclei. We are studying nuclei on or near the r-process path via single-nucleon transfer reactions on neutron-rich radioactive beams at ORNL's Holifield Radioactive Ion Beam Facility (HRIBF). Owing to the difficulties in studying these reactions in inverse kinematics, a variety of experimental approaches are being developed. We present the experimental methods and initial results., Comment: Proceedings of the Third International Conference on Fission and Properties of Neutron-Rich Nuclei
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- 2002
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28. Cybersecurity and Information Assurance for the Clinical Laboratory
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Ankush U Patel, Christopher L Williams, Steven N Hart, Christopher A Garcia, Thomas J S Durant, Toby C Cornish, and David S McClintock
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General Medicine - Abstract
Background Network-connected medical devices have rapidly proliferated in the wake of recent global catalysts, leaving clinical laboratories and healthcare organizations vulnerable to malicious actors seeking to ransom sensitive healthcare information. As organizations become increasingly dependent on integrated systems and data-driven patient care operations, a sudden cyberattack and the associated downtime can have a devastating impact on patient care and the institution as a whole. Cybersecurity, information security, and information assurance principles are, therefore, vital for clinical laboratories to fully prepare for what has now become inevitable, future cyberattacks. Content This review aims to provide a basic understanding of cybersecurity, information security, and information assurance principles as they relate to healthcare and the clinical laboratories. Common cybersecurity risks and threats are defined in addition to current proactive and reactive cybersecurity controls. Information assurance strategies are reviewed, including traditional castle-and-moat and zero-trust security models. Finally, ways in which clinical laboratories can prepare for an eventual cyberattack with extended downtime are discussed. Summary The future of healthcare is intimately tied to technology, interoperability, and data to deliver the highest quality of patient care. Understanding cybersecurity and information assurance is just the first preparative step for clinical laboratories as they ensure the protection of patient data and the continuity of their operations.
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- 2023
29. Agile Health Care Analytics: Enabling Real-Time Disease Surveillance With a Computational Health Platform
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Schulz, Wade L, Durant, Thomas J S, Torre Jr, Charles J, Hsiao, Allen L, and Krumholz, Harlan M
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
The ongoing coronavirus disease outbreak demonstrates the need for novel applications of real-time data to produce timely information about incident cases. Using health information technology (HIT) and real-world data, we sought to produce an interface that could, in near real time, identify patients presenting with suspected respiratory tract infection and enable monitoring of test results related to specific pathogens, including severe acute respiratory syndrome coronavirus 2. This tool was built upon our computational health platform, which provides access to near real-time data from disparate HIT sources across our health system. This combination of technology allowed us to rapidly prototype, iterate, and deploy a platform to support a cohesive organizational response to a rapidly evolving outbreak. Platforms that allow for agile analytics are needed to keep pace with evolving needs within the health care system.
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- 2020
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30. What Is Normal About Normal Modes?
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Abrahamsson, Thomas J. S., Allemang, Randall J., Zimmerman, Kristin B, Series editor, and Mains, Michael, editor
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- 2016
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31. Redundant Information Rejection in Sensor Localisation Using System Gramians
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Gibanica, Mladen, Abrahamsson, Thomas J. S., Kammer, Daniel C., Zimmerman, Kristin B, Series editor, and Mains, Michael, editor
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- 2016
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32. Calibration, Validation and Uncertainty Quantification of Nominally Identical Car Subframes
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Gibanica, Mladen, Abrahamsson, Thomas J. S., Olsson, Magnus, Atamturktur, Sez, editor, Schoenherr, Tyler, editor, Moaveni, Babak, editor, and Papadimitriou, Costas, editor
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- 2016
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33. The Effects of Essential and Non-Essential Metal Toxicity in the Drosophila melanogaster Insect Model: A Review
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Mitchell R. Slobodian, Jesse D. Petahtegoose, Athena L. Wallis, Danica C. Levesque, and Thomas J. S. Merritt
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essential metals ,non-essential metals ,Drosophila melanogaster ,metal toxicity ,iron homeostasis ,zinc homeostasis ,Chemical technology ,TP1-1185 - Abstract
The biological effects of environmental metal contamination are important issues in an industrialized, resource-dependent world. Different metals have different roles in biology and can be classified as essential if they are required by a living organism (e.g., as cofactors), or as non-essential metals if they are not. While essential metal ions have been well studied in many eukaryotic species, less is known about the effects of non-essential metals, even though essential and non-essential metals are often chemically similar and can bind to the same biological ligands. Insects are often exposed to a variety of contaminated environments and associated essential and non-essential metal toxicity, but many questions regarding their response to toxicity remain unanswered. Drosophila melanogaster is an excellent insect model species in which to study the effects of toxic metal due to the extensive experimental and genetic resources available for this species. Here, we review the current understanding of the impact of a suite of essential and non-essential metals (Cu, Fe, Zn, Hg, Pb, Cd, and Ni) on the D. melanogaster metal response system, highlighting the knowledge gaps between essential and non-essential metals in D. melanogaster. This review emphasizes the need to use multiple metals, multiple genetic backgrounds, and both sexes in future studies to help guide future research towards better understanding the effects of metal contamination in general.
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- 2021
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34. Towards an Automatic Modal Parameter Estimation Framework: Mode Clustering
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Vakilzadeh, Majid Khorsand, Yaghoubi, Vahid, Johansson, Anders T., Abrahamsson, Thomas J. S., Proulx, Tom, Series editor, and Mains, Michael, editor
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- 2015
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35. The Roadmap to Interoperability and Laboratory Data: Current State and Next Steps
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Tylis Chang, Daniel S Herman, David S McClintock, and Thomas J S Durant
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General Medicine - Published
- 2023
36. Sex and Genetic Background Influence Superoxide Dismutase (cSOD)-Related Phenotypic Variation in Drosophila melanogaster
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Courtney E. Lessel, Tony L. Parkes, Joel Dickinson, and Thomas J. S. Merritt
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superoxide dismutase ,Drosophila melanogaster ,sex ,genetic background ,Genetics ,QH426-470 - Abstract
Mutations often have drastically different effects in different genetic backgrounds; understanding a gene’s biological function then requires an understanding of its interaction with genetic diversity. The antioxidant enzyme cytosolic copper/zinc superoxide dismutase (cSOD) catalyzes the dismutation of the superoxide radical, a molecule that can induce oxidative stress if its concentration exceeds cellular control. Accordingly, Drosophila melanogaster lacking functional cSOD exhibit a suite of phenotypes including decreased longevity, hypersensitivity to oxidative stress, impaired locomotion, and reduced NADP(H) enzyme activity in males. To date, cSOD-null phenotypes have primarily been characterized using males carrying one allele, cSodn108red, in a single genetic background. We used ANOVA, and the effect size partial eta squared, to partition the amount of variation attributable to cSOD activity, sex, and genetic background across a series of life history, locomotor, and biochemical phenotypes associated with the cSOD-null condition. Overall, the results demonstrate that the cSOD-null syndrome is largely consistent across sex and genetic background, but also significantly influenced by both. The sex-specific effects are particularly striking and our results support the idea that phenotypes cannot be considered to be fully defined if they are examined in limited genetic contexts.
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- 2017
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37. From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights
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Katrin Hänsel, Sarah N. Dudgeon, Kei-Hoi Cheung, Thomas J. S. Durant, and Wade L. Schulz
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Health Information Management ,Medicine (miscellaneous) ,Health Informatics ,Information Systems - Abstract
Graph data models are an emerging approach to structure clinical and biomedical information. These models offer intriguing opportunities for novel approaches in healthcare, such as disease phenotyping, risk prediction, and personalized precision care. The combination of data and information in a graph model to create knowledge graphs has rapidly expanded in biomedical research, but the integration of real-world data from the electronic health record has been limited. To broadly apply knowledge graphs to EHR and other real-world data, a deeper understanding of how to represent these data in a standardized graph model is needed. We provide an overview of the state-of-the-art research for clinical and biomedical data integration and summarize the potential to accelerate healthcare and precision medicine research through insight generation from integrated knowledge graphs.
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- 2023
38. The characterisation of acrylic painting materials and implications for their use, conservation and stability
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Learner, Thomas J. S.
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547 ,Resins ,Varnishes - Published
- 1996
39. Ionic Liquids: Current State and Future Directions
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Mark B. Shiflett, Aaron M. Scurto, Mark B. Shiflett, Aaron M. Scurto, Oleksandra Zavgorodnya, Julia L. Shamshina, Paula Berton, Robin D. Rogers, Thomas J. S. Schubert, John W. Whitley, Michael T. Burnette, Shellby C. Benefield, Jason E. Bara, Ru Xie, Carlos R. López-Barrón, Norman J. Wagner, Chip J.
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- 2017
40. FEM Calibration with FRF Damping Equalization
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Abrahamsson, Thomas J. S., Kammer, Daniel C., Atamturktur, H. Sezer, editor, Moaveni, Babak, editor, Papadimitriou, Costas, editor, and Schoenherr, Tyler, editor
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- 2014
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41. Development of Simplified Models for Wind Turbine Blades with Application to NREL 5 MW Offshore Research Wind Turbine
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Vakilzadeh, Majid Khorsand, Johansson, Anders T., Lindholm, Carl-Johan, Hedlund, Johan, Abrahamsson, Thomas J. S., Proulx, Tom, Series editor, Allen, Matt, editor, Mayes, Randy, editor, and Rixen, Daniel, editor
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- 2014
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42. Global urban environmental change drives adaptation in white clover
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James S. Santangelo, Rob W. Ness, Beata Cohan, Connor R. Fitzpatrick, Simon G. Innes, Sophie Koch, Lindsay S. Miles, Samreen Munim, Pedro R. Peres-Neto, Cindy Prashad, Alex T. Tong, Windsor E. Aguirre, Philips O. Akinwole, Marina Alberti, Jackie Álvarez, Jill T. Anderson, Joseph J. Anderson, Yoshino Ando, Nigel R. Andrew, Fabio Angeoletto, Daniel N. Anstett, Julia Anstett, Felipe Aoki-Gonçalves, A. Z. Andis Arietta, Mary T. K. Arroyo, Emily J. Austen, Fernanda Baena-Díaz, Cory A. Barker, Howard A. Baylis, Julia M. Beliz, Alfonso Benitez-Mora, David Bickford, Gabriela Biedebach, Gwylim S. Blackburn, Mannfred M. A. Boehm, Stephen P. Bonser, Dries Bonte, Jesse R. Bragger, Cristina Branquinho, Kristien I. Brans, Jorge C. Bresciano, Peta D. Brom, Anna Bucharova, Briana Burt, James F. Cahill, Katelyn D. Campbell, Elizabeth J. Carlen, Diego Carmona, Maria Clara Castellanos, Giada Centenaro, Izan Chalen, Jaime A. Chaves, Mariana Chávez-Pesqueira, Xiao-Yong Chen, Angela M. Chilton, Kristina M. Chomiak, Diego F. Cisneros-Heredia, Ibrahim K. Cisse, Aimée T. Classen, Mattheau S. Comerford, Camila Cordoba Fradinger, Hannah Corney, Andrew J. Crawford, Kerri M. Crawford, Maxime Dahirel, Santiago David, Robert De Haan, Nicholas J. Deacon, Clare Dean, Ek del-Val, Eleftherios K. Deligiannis, Derek Denney, Margarete A. Dettlaff, Michelle F. DiLeo, Yuan-Yuan Ding, Moisés E. Domínguez-López, Davide M. Dominoni, Savannah L. Draud, Karen Dyson, Jacintha Ellers, Carlos I. Espinosa, Liliana Essi, Mohsen Falahati-Anbaran, Jéssica C. F. Falcão, Hayden T. Fargo, Mark D. E. Fellowes, Raina M. Fitzpatrick, Leah E. Flaherty, Pádraic J. Flood, María F. Flores, Juan Fornoni, Amy G. Foster, Christopher J. Frost, Tracy L. Fuentes, Justin R. Fulkerson, Edeline Gagnon, Frauke Garbsch, Colin J. Garroway, Aleeza C. Gerstein, Mischa M. Giasson, E. Binney Girdler, Spyros Gkelis, William Godsoe, Anneke M. Golemiec, Mireille Golemiec, César González-Lagos, Amanda J. Gorton, Kiyoko M. Gotanda, Gustaf Granath, Stephan Greiner, Joanna S. Griffiths, Filipa Grilo, Pedro E. Gundel, Benjamin Hamilton, Joyce M. Hardin, Tianhua He, Stephen B. Heard, André F. Henriques, Melissa Hernández-Poveda, Molly C. Hetherington-Rauth, Sarah J. Hill, Dieter F. Hochuli, Kathryn A. Hodgins, Glen R. Hood, Gareth R. Hopkins, Katherine A. Hovanes, Ava R. Howard, Sierra C. Hubbard, Carlos N. Ibarra-Cerdeña, Carlos Iñiguez-Armijos, Paola Jara-Arancio, Benjamin J. M. Jarrett, Manon Jeannot, Vania Jiménez-Lobato, Mae Johnson, Oscar Johnson, Philip P. Johnson, Reagan Johnson, Matthew P. Josephson, Meen Chel Jung, Michael G. Just, Aapo Kahilainen, Otto S. Kailing, Eunice Kariñho-Betancourt, Regina Karousou, Lauren A. Kirn, Anna Kirschbaum, Anna-Liisa Laine, Jalene M. LaMontagne, Christian Lampei, Carlos Lara, Erica L. Larson, Adrián Lázaro-Lobo, Jennifer H. Le, Deleon S. Leandro, Christopher Lee, Yunting Lei, Carolina A. León, Manuel E. Lequerica Tamara, Danica C. Levesque, Wan-Jin Liao, Megan Ljubotina, Hannah Locke, Martin T. Lockett, Tiffany C. Longo, Jeremy T. Lundholm, Thomas MacGillavry, Christopher R. Mackin, Alex R. Mahmoud, Isaac A. Manju, Janine Mariën, D. Nayeli Martínez, Marina Martínez-Bartolomé, Emily K. Meineke, Wendy Mendoza-Arroyo, Thomas J. S. Merritt, Lila Elizabeth L. Merritt, Giuditta Migiani, Emily S. Minor, Nora Mitchell, Mitra Mohammadi Bazargani, Angela T. Moles, Julia D. Monk, Christopher M. Moore, Paula A. Morales-Morales, Brook T. Moyers, Miriam Muñoz-Rojas, Jason Munshi-South, Shannon M. Murphy, Maureen M. Murúa, Melisa Neila, Ourania Nikolaidis, Iva Njunjić, Peter Nosko, Juan Núñez-Farfán, Takayuki Ohgushi, Kenneth M. Olsen, Øystein H. Opedal, Cristina Ornelas, Amy L. Parachnowitsch, Aaron S. Paratore, Angela M. Parody-Merino, Juraj Paule, Octávio S. Paulo, João Carlos Pena, Vera W. Pfeiffer, Pedro Pinho, Anthony Piot, Ilga M. Porth, Nicholas Poulos, Adriana Puentes, Jiao Qu, Estela Quintero-Vallejo, Steve M. Raciti, Joost A. M. Raeymaekers, Krista M. Raveala, Diana J. Rennison, Milton C. Ribeiro, Jonathan L. Richardson, Gonzalo Rivas-Torres, Benjamin J. Rivera, Adam B. Roddy, Erika Rodriguez-Muñoz, José Raúl Román, Laura S. Rossi, Jennifer K. Rowntree, Travis J. Ryan, Santiago Salinas, Nathan J. Sanders, Luis Y. Santiago-Rosario, Amy M. Savage, J.F. Scheepens, Menno Schilthuizen, Adam C. Schneider, Tiffany Scholier, Jared L. Scott, Summer A. Shaheed, Richard P. Shefferson, Caralee A. Shepard, Jacqui A. Shykoff, Georgianna Silveira, Alexis D. Smith, Lizet Solis-Gabriel, Antonella Soro, Katie V. Spellman, Kaitlin Stack Whitney, Indra Starke-Ottich, Jörg G. Stephan, Jessica D. Stephens, Justyna Szulc, Marta Szulkin, Ayco J. M. Tack, Ítalo Tamburrino, Tayler D. Tate, Emmanuel Tergemina, Panagiotis Theodorou, Ken A. Thompson, Caragh G. Threlfall, Robin M. Tinghitella, Lilibeth Toledo-Chelala, Xin Tong, Léa Uroy, Shunsuke Utsumi, Martijn L. Vandegehuchte, Acer VanWallendael, Paula M. Vidal, Susana M. Wadgymar, Ai-Ying Wang, Nian Wang, Montana L. Warbrick, Kenneth D. Whitney, Miriam Wiesmeier, J. Tristian Wiles, Jianqiang Wu, Zoe A. Xirocostas, Zhaogui Yan, Jiahe Yao, Jeremy B. Yoder, Owen Yoshida, Jingxiong Zhang, Zhigang Zhao, Carly D. Ziter, Matthew P. Zuellig, Rebecca A. Zufall, Juan E. Zurita, Sharon E. Zytynska, Marc T. J. Johnson, Ecological Science, Animal Ecology, Biology, Faculty of Economic and Social Sciences and Solvay Business School, Faculty of Medicine and Pharmacy, ON, University of North Carolina, LA, QC, DePaul University, IN, Universidad San Francisco de Quito USFQ, University of Georgia, Uppsala University, Hokkaido University, NSW, Programa de Pós-Graduação em Geografia da UFMT, University of British Columbia, A. C., CT, Universidad de Chile, Mount Allison University, Instituto de Ecología A. C., University of Cambridge, FL, Universidad Bernardo O'Higgins, Ghent University, West Long Branch, Lisboa, KU Leuven, Massey University, University of Cape Town, University of Münster, AB, University of Sussex, Stockholm University, Universidad San Francisco de Quito, East China Normal University, Shanghai Engineering Research Center of Sustainable Plant Innovation, MI, TX, Facultad de Agronomía, NS, Université de Rennes, IA, MN, Manchester Metropolitan University, UNAM, Aristotle University of Thessaloniki, University of Helsinki, University of Glasgow, Hendrix College, Vrije Universiteit Amsterdam, Universidad Técnica Particular de Loja, Universidade Federal de Sergipe (UFS), University of Tehran, Norwegian University of Science and Technology, AZ, Max Planck Institute for Plant Breeding Research, Universidad Nacional Autónoma de México, Potsdam-Golm, University of Alaska Anchorage, Tropical Diversity, Université de Moncton, MB, University of New Brunswick, Lincoln University, Universidad Adolfo Ibáñez, Brock University, ICB - University of Talca, Curtin University, Murdoch University, Western Oregon University, Facultad de Ciencias de la Vida, Institute of Ecology and Biodiversity (IEB), Lund University, Universidad Autónoma de Guerrero -CONACYT, University of Illinois at Chicago, Dufferin-Peel Catholic District School Board, U.S. Army ERDC-CERL, Tübingen, University of Zurich, Urban Wildlife Institute, Universidad Católica de la Santísima Concepción, CO, MS, Rutgers University-Camden, Chinese Academy of Sciences, Beijing Normal University, NM, University of Wisconsin - Eau Claire, Iranian Research Organization for Science and Technology (IROST), ME, Universidad de Antioquia, MA, Universidad de Sevilla, Universidad Mayor, Naturalis Biodiversity Center, Kyoto University, University of Alaska Fairbanks, Senckenberg Research Institute and Natural History Museum Frankfurt, Universidade Estadual Paulista (UNESP), WI, Swedish University of Agricultural Sciences, Universidad CES, Hofstra University, Nord University, VA, University of Almería, Faculty of Biological Sciences, Leiden University, Jyväskylä, KY, University of Tokyo, Ecologie Systématique et Evolution, Martin Luther University Halle-Wittenberg, University of Warsaw, Davidson College, Huazhong Agricultural University, Technical University of Munich, Lanzhou University, University of Bern, University of Liverpool, Repositório da Universidade de Lisboa, University of Toronto at Mississauga, University of North Carolina [Chapel Hill] (UNC), University of North Carolina System (UNC), University of Louisiana, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Biodiversité agroécologie et aménagement du paysage (UMR BAGAP), Ecole supérieure d'Agricultures d'Angers (ESA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Rennes Angers, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Huazhong Agricultural University [Wuhan] (HZAU), California State University [Northridge] (CSUN), Saint Mary's University [Halifax], Kunming Institute of Botany [CAS] (KIB), Chinese Academy of Sciences [Beijing] (CAS), Concordia University [Montreal], University of Houston, Universidad San Francisco de Quito (USFQ), Technische Universität München = Technical University of Munich (TUM), and The Global Urban Evolution project was primarily funded by an NSERC DiscoveryGrant, Canada Research Chair and NSERC Steacie Fellowship to M.T.J.J.. J.S.S. receivedfunding from an NSERC CGS and C.R.F. is funded by an NSERC PDF. P.R.P.-N., R.W.N. andJ.C.C. were supported by NSERC Discovery grants. M.A. was funded by NSF RCN DEB-1840663. F.A. received funding from CAPES. MTKA was funded by CONICYT PIA APOYOCCTE AFB170008. J.R.B, T.C.L., and S.A.S were supported by Monmouth University Sch. ofSci. SRP. E.G. was funded by D. Biologie, Université de Moncton. C.G.-L. received fundingfrom the Center of Applied Ecology and Sustainability (CAPES), and ANID PIA/BASALFB0002. S.G. was funded by the Max Planck Society. P.J.-A. was funded by ANID PIA/BASALFB210006. I.N. and M.S. were supported by Leiden Municipality. K.M.O. was funded by USNSF awards IOS-1557770 and DEB-1601641. J.C.P. thanks FAPESP process 2018/00107-3, andM.C.R. thanks CNPq and FAPESP.
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sopeutuminen ,Rural Population ,valkoapila ,Multidisciplinary ,Urbanization ,evoluutio ,kasvillisuus ,Genes, Plant ,Adaptation, Physiological ,Biological Evolution ,SDG 11 - Sustainable Cities and Communities ,evoluutioekologia ,Hydrogen Cyanide ,570 Life sciences ,biology ,Trifolium ,kaupungistuminen ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Cities ,ympäristönmuutokset ,Ecosystem ,Genome, Plant - Abstract
Made available in DSpace on 2022-04-28T19:52:06Z (GMT). No. of bitstreams: 0 Previous issue date: 2022-03-18 Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural clines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale. Department of Biology University of Toronto Mississauga ON Centre for Urban Environments University of Toronto Mississauga ON Department of Biology University of North Carolina, Chapel Hill Department of Biology University of Louisiana LA Department of Biology Queen's University ON Department of Biology Concordia University QC Department of Biological Sciences DePaul University Department of Biology DePauw University IN Department of Urban Design and Planning, University of Washington, Seattle, WA, USA Colegio de Ciencias Biológicas y Ambientales Universidad San Francisco de Quito USFQ Department of Genetics University of Georgia Department of Ecology and Genetics Evolutionary Biology Centre Uppsala University Field Science Center for Northern Biosphere Hokkaido University Natural History Museum Zoology University of New England NSW Programa de Pós-Graduação em Geografia da UFMT campus de Rondonópolis Department of Botany and Biodiversity Research Centre University of British Columbia Graduate Program in Genome Sciences and Technology Genome Sciences Centre University of British Columbia Department of Microbiology and Immunology University of British Columbia Red de Biología Evolutiva Instituto de Ecología A. C. School of the Environment Yale University CT Departamento de Ciencias Ecológicas Universidad de Chile, Facultad de Ciencias Instituto de Ecología y Biodiversidad Universidad de Chile Department of Biology Mount Allison University Red de Ecoetología Instituto de Ecología A. C. Department of Biology University of Ottawa ON Department of Zoology University of Cambridge Department of Biology, Washington University in St. Louis, St. Louis, MO, USA Department of Biology University of Miami FL Centro de Investigación en Recursos Naturales y Sustentabilidad (CIRENYS) Universidad Bernardo O'Higgins Department of Biology, University of La Verne, La Verne, CA, USA Département des sciences du bois et de la forêt Université Laval QC Evolution & Ecology Research Centre School of Biological Earth and Environmental Sciences UNSW Sydney NSW Department of Biology Ghent University Department of Biology Monmouth University West Long Branch Centre for Ecology Evolution and Environmental Changes Faculdade de Ciências Universidade de Lisboa Lisboa Department of Biology KU Leuven School of Agriculture and Environment Wildlife and Ecology group Massey University, Palmerston North Department of Biological Sciences University of Cape Town Institute of Landscape Ecology University of Münster Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY, USA Department of Biological Sciences University of Alberta AB Louis Calder Center and Department of Biological Sciences, Fordham University, Armonk, NY, USA Departamento de Ecología Tropical, Universidad Autónoma de Yucatán, Mérida, Yucatán, México School of Life Sciences University of Sussex Department of Ecology Environment and Plant Sciences Stockholm University iBIOTROP Instituto de Biodiversidad Tropical Universidad San Francisco de Quito Department of Biology, San Francisco State University, San Francisco, CA, USA Unidad de Recursos Naturales, Centro de Investigación Científica de Yucatán AC, Mérida, Yucatán, México School of Ecological and Environmental Sciences East China Normal University Shanghai Engineering Research Center of Sustainable Plant Innovation Centre for Ecosystem Science School of Biological Earth and Environmental Sciences UNSW Sydney NSW Department of Ecology and Evolutionary Biology University of Michigan MI Department of Biosciences Rice University TX IFEVA Universidad de Buenos Aires Facultad de Agronomía, CONICET Biology Department Saint Mary's University NS Department of Biological Sciences, Universidad de los Andes Department of Biology and Biochemistry University of Houston TX Université de Rennes Department of Zoology and Biodiversity Research Centre University of British Columbia Department of Environmental Studies Dordt University Sioux Center IA Department of Biology Minneapolis Community and Technical College MN Department of Natural Sciences Ecology and Environment Research Centre Manchester Metropolitan University Instituto de Investigaciones en Ecosistemas y Sustentabilidad UNAM Department of Botany School of Biology Aristotle University of Thessaloniki Faculty of Biological and Environmental Science Organismal & Evolutionary Biology Research Programme University of Helsinki Institute of Biodiversity Animal Health and Comparative Medicine University of Glasgow Department of Biology Hendrix College Department of Ecological Science Vrije Universiteit Amsterdam Departamento de Ciencias Biológicas y Agropecuarias Universidad Técnica Particular de Loja Departamento de Biologia Universidade Federal de Santa Maria (UFSM) Department of Plant Sciences School of Biology College of Science University of Tehran NTNU University Museum Norwegian University of Science and Technology Red de Estudios Moleculares Avanzados Instituto de Ecología A. C. School of Biological Sciences, University of Reading, Whiteknights Park, Reading, Berkshire, UK Department of Biology Northern Arizona University AZ Department of Biological Sciences MacEwan University AB Max Planck Institute for Plant Breeding Research Departamento de Ecología Evolutiva Instituto de Ecología Universidad Nacional Autónoma de México Max Planck Institute of Molecular Plant Physiology Potsdam-Golm BIO5 Institute University of Arizona AZ Alaska Center for Conservation Science University of Alaska Anchorage Tropical Diversity, Royal Botanical Garden of Edinburgh Département de biologie Université de Moncton Department of Biological Sciences University of Manitoba MB Departments of Microbiology & Statistics University of Manitoba MB Department of Biology University of New Brunswick Department of Biology Kalamazoo College MI BioProtection Research Centre Lincoln University Departamento de Ciencias Facultad de Artes Liberales Universidad Adolfo Ibáñez Department of Ecology Evolution Behaviour University of Minnesota MN Department of Biological Sciences Brock University Department of Environmental Toxicology, University of California, Davis, CA, USA ICB - University of Talca School of Molecular and Life Science Curtin University College of Science Health Engineering and Education Murdoch University, Murdoch School of Life and Environmental Sciences University of Sydney NSW School of Biological Sciences, Monash University, Melbourne, VIC, Australia Department of Biological Sciences Wayne State University MI Department of Biology Western Oregon University, OR School of Natural Resources and the Environment University of Arizona AZ Departamento de Ecología Humana, Cinvestav Mérida Departamento de Ciencias Biológicas y Departamento de Ecología y Biodiversidad Facultad de Ciencias de la Vida, Universidad Andrés Bello Institute of Ecology and Biodiversity (IEB) Department of Biology Lund University Department of Biology Norwegian University of Science and Technology Escuela Superiro de Desarrollo Sustentable Universidad Autónoma de Guerrero -CONACYT Clarkson Secondary School Peel District School Board ON Homelands Sr. Public School Peel District School Board ON Department of Biological Sciences University of Illinois at Chicago Dufferin-Peel Catholic District School Board, St. James Catholic Global Learning Centre Department of Biosciences University of Calgary AB Ecological Processes Branch U.S. Army ERDC-CERL Department of Biology, Oberlin College, Oberlin, OH, USA Escuela Nacional de Estudios Superiores Unidad Morelia UNAM Institute of Evolution and Ecology University of Tübingen Tübingen Department of Evolutionary Biology and Environmental Studies University of Zurich, Winterthurerstrasse Urban Wildlife Institute Department of Conservation and Science, Lincoln Park Zoo Departamento de Ecología Universidad Católica de la Santísima Concepción Department of Biological Sciences University of Denver CO Department of Biological Sciences Mississippi State University MS Department of Biology Center for Computational & Integrative Biology Rutgers University-Camden Kunming Institute of Botany Chinese Academy of Sciences Department of Chemistry & Biochemistry Laurentian University ON Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering College of Life Sciences Beijing Normal University School of BioSciences, University of Melbourne, Melbourne, VIC, Australia Posgrado en Ciencias Biológicas Universidad Nacional Autónoma de México Department of Biological Sciences, Auburn University, Auburn, AL, USA Department of Entomology and Nematology, University of California, Davis, CA, USA Department of Biology University of New Mexico NM Department of Biology University of Wisconsin - Eau Claire Agriculture Institute Iranian Research Organization for Science and Technology (IROST) Department of Biology Colby College ME Instituto de Biología Universidad de Antioquia Department of Biology University of Massachusetts Boston MA Agricultural Biology Colorado State University CO Departamento de Biología Vegetal y Ecología Facultad de Biología Universidad de Sevilla, Av. Reina Mercedes s/n Facultad de Estudios Interdisciplinarios Centro GEMA- Genómica Universidad Mayor Evolutionary Ecology Group Naturalis Biodiversity Center Department of Biology and Chemistry Nipissing University ON, North Bay Center for Ecological Research Kyoto University Bonanza Creek Long Term Ecological Research Program University of Alaska Fairbanks Department of Botany and Molecular Evolution Senckenberg Research Institute and Natural History Museum Frankfurt Departamento de Biodiversidade Instituto de Biociências Univ Estadual Paulista - UNESP Nelson Institute for Environmental Studies University of Wisconsin-Madison WI Department of Biology, California State University, Northridge, Los Angeles, CA, USA Department of Ecology Swedish University of Agricultural Sciences Facultad de Ciencias y Biotecnologia Universidad CES Department of Biology Hofstra University Faculty of Biosciences and Aquaculture Nord University, Bodø Division of Biological Sciences, University of California San Diego, San Diego, CA, USA Department of Biology University of Richmond VA Estación de Biodiversidad Tiputini Colegio de Ciencias Biológicas y Ambientales Universidad San Francisco de Quito USFQ Department of Biological Sciences Institute of Environment Florida International University FL Agronomy Department University of Almería Department of Biological Sciences and Center for Urban Ecology and Sustainability Butler University IN Department of Biological Sciences Louisiana State University LA Faculty of Biological Sciences, Goethe University Frankfurt Institute of Biology Leiden Leiden University Department of Biological and Environmental Science University of Jyväskylä Jyväskylä Department of Biology University of Louisville KY Organization for Programs on Environmental Science University of Tokyo CNRS AgroParisTech Ecologie Systématique et Evolution, Université Paris-Saclay Department of Biology, Providence College, Providence, RI, USA General Zoology Institute for Biology Martin Luther University Halle-Wittenberg International Arctic Research Center University of Alaska Fairbanks Science, Technology and Society Department, Rochester Institute of Technology, Rochester, NY, USA SLU Swedish Species Information Centre Swedish University of Agricultural Sciences Department of Biology Westfield State University MA Centre of New Technologies University of Warsaw Department of Biology, Stanford University, Stanford, CA, USA Plant Biology Department Michigan State University MI Biology Department Davidson College College of Horticulture and Forestry Sciences/ Hubei Engineering Technology Research Center for Forestry Information Huazhong Agricultural University School of Life Sciences Technical University of Munich School of Life Sciences Lanzhou University Institute of Ecology and Evolution University of Bern Department of Evolution Ecology and Behaviour University of Liverpool Departamento de Biodiversidade Instituto de Biociências Univ Estadual Paulista - UNESP
- Published
- 2022
43. Residual States for Modal Models Identified from Accelerance Data
- Author
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Gibanica, Mladen, primary, Abrahamsson, Thomas J. S., additional, and Allemang, Randall J., additional
- Published
- 2018
- Full Text
- View/download PDF
44. Cybersecurity and Information Assurance for the Clinical Laboratory
- Author
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Patel, Ankush U, primary, Williams, Christopher L, additional, Hart, Steven N, additional, Garcia, Christopher A, additional, Durant, Thomas J S, additional, Cornish, Toby C, additional, and McClintock, David S, additional
- Published
- 2023
- Full Text
- View/download PDF
45. The Roadmap to Interoperability and Laboratory Data: Current State and Next Steps
- Author
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Chang, Tylis, primary, Herman, Daniel S, additional, McClintock, David S, additional, and Durant, Thomas J S, additional
- Published
- 2023
- Full Text
- View/download PDF
46. Solar-driven CO2 reduction catalysed by hybrid supramolecular photocathodes and enhanced by ionic liquids
- Author
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Miró, Roger, primary, Guzmán, Hilmar, additional, Godard, Cyril, additional, Gual, Aitor, additional, Zammillo, Federica, additional, Schubert, Thomas J. S., additional, Iliev, Boyan, additional, Chiodoni, Angelica, additional, Hernández, Simelys, additional, and de los Bernardos, Miriam Díaz, additional
- Published
- 2023
- Full Text
- View/download PDF
47. An Interactive Protocol for In-Classroom DNA Extraction
- Author
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Levesque, Danica C., primary, Wallis, Athena L., additional, Daypuk, Jenna, additional, Petahtegoose, Jesse, additional, Slobodian, Mitchell, additional, Sutherland-Hutchings, Allie K., additional, Black, Ian, additional, Vélez, Jessica M., additional, Abood, Abdullah, additional, Wahbeh, Marah H., additional, Cejas, Romina B., additional, Cisneros, Angel F., additional, McNeil, Laerie, additional, Konno, Kento, additional, McGregor, Lissa, additional, Faroqi, Birha, additional, Bautisa, Carla, additional, Rajpurohit, Subhash, additional, Garg, Divita, additional, Zhu, Jiechun, additional, Yang, Guangdong, additional, Arthur, Solomon, additional, and Merritt, Thomas J. S., additional
- Published
- 2023
- Full Text
- View/download PDF
48. Could potassium-ion batteries become a competitive technology?
- Author
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Zarrabeitia, Maider, primary, Carretero-González, Javier, additional, Leskes, Michal, additional, Adenusi, Henry, additional, Iliev, Boyan, additional, Schubert, Thomas J. S., additional, Passerini, Stefano, additional, and Castillo-Martínez, Elizabeth, additional
- Published
- 2023
- Full Text
- View/download PDF
49. Regulation at Drosophila’s Malic Enzyme highlights the complexity of transvection and its sensitivity to genetic background
- Author
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Rzezniczak, Teresa Z, primary, Rzezniczak, Mark T, additional, Reed, Bruce H, additional, Dworkin, Ian, additional, and Merritt, Thomas J S, additional
- Published
- 2022
- Full Text
- View/download PDF
50. Solar-driven CO2 reduction catalysed by hybrid supramolecular photocathodes and enhanced by ionic liquids
- Author
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Roger Miró, Hilmar Guzmán, Cyril Godard, Aitor Gual, Federica Zammillo, Thomas J. S. Schubert, Boyan Iliev, Angelica Chiodoni, Simelys Hernández, and Miriam Díaz de los Bernardos
- Subjects
Catalysis - Abstract
Photoelectrochemical carbon dioxide reduction (CO2) at ambient temperature and pressure was performed using molecular chromophores and catalyst assemblies on CuGaO2-based electrodes in an ionic liquid (IL) organic solution, acting as a CO2 absorbent and electrolyte. A simple and versatile methodology based on the silanization of the CuGaO2 electrode followed by electropolymerization provided a series of molecular and supramolecular hybrid photocathodes for solar driven CO2 reduction. Focusing on the cathodic half reactions, the most promising conditions for the formation of CO2 reduction products were determined. The results revealed a beneficial effect of the ionic liquid on the conversion of CO2 to formic acid and suppression of the production of hydrogen. The potentiality of anchoring supramolecular complexes on semiconductor photoelectrocatalysts was demonstrated to boost both carrier transport and catalytic activity with a FEred of up to 81% compared with the obtained FEred of 52% using bare CuGaO2 with formate as the major product.
- Published
- 2023
Catalog
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