1. The structures of proton-bound dimers of glycine with phenylalanine and pentafluorophenylalanine
- Author
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Vincent Steinmetz, W. Scott Hopkins, Weiqiang Fu, Michael J. Lecours, Eric Fillion, Jeffrey Xiong, Rick A. Marta, Terry B. McMahon, and Patrick J. J. Carr
- Subjects
chemistry.chemical_classification ,animal structures ,integumentary system ,Chemistry ,Intermolecular force ,Phenylalanine ,Protonation ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,Dissociation (chemistry) ,0104 chemical sciences ,Amino acid ,Crystallography ,Molecular dynamics ,embryonic structures ,Moiety ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry ,0210 nano-technology ,Spectroscopy - Abstract
Infrared multiple photon dissociation spectra of the proton-bound heterodimers of phenylalanine/glycine (Phe·H + ·Gly) and pentafluorophenylalanine/glycine (F 5 -Phe·H + ·Gly) have been acquired in the 975–1975 cm −1 region. Exhaustive basin hopping molecular dynamics searches and subsequent DFT calculations predict four low energy intermolecular binding motifs. The spectrum of F 5 -Phe·H + ·Gly is assigned predominantly to isomers exhibiting a N H + ⋯O intermolecular interaction between nitrogen-protonated Gly and the carbonyl oxygen atom of F 5 -Phe. In contrast, the spectrum Phe·H + ·Gly is found to consist of a mixture of isomers exhibiting the N H + ⋯O between nitrogen-protonated Gly and the carbonyl oxygen of neutral Phe, and isomers exhibiting a N H + ⋯N interaction between nitrogen-protonated Phe and the neutral Gly moiety. Cation-π effects also seem to influence the cluster geometries, especially in the case of the Phe·H + ·Gly global minimum structure where the phenyl ring orients with the site of protonation so as to maximize charge-quadrupole interactions.
- Published
- 2016
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