155 results on '"Taylor NL"'
Search Results
2. Energy costs of salt tolerance in crop plants
- Author
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Munns, R, Day, DA, Fricke, W, Watt, M, Arsova, B, Barkla, BJ, Bose, J, Byrt, CS, Chen, Z-H, Foster, KJ, Gilliham, M, Henderson, SW, Jenkins, CLD, Kronzucker, HJ, Miklavcic, SJ, Plett, D, Roy, SJ, Shabala, S, Shelden, MC, Soole, KL, Taylor, NL, Tester, M, Wege, S, Wegner, LH, Tyerman, SD, Munns, R, Day, DA, Fricke, W, Watt, M, Arsova, B, Barkla, BJ, Bose, J, Byrt, CS, Chen, Z-H, Foster, KJ, Gilliham, M, Henderson, SW, Jenkins, CLD, Kronzucker, HJ, Miklavcic, SJ, Plett, D, Roy, SJ, Shabala, S, Shelden, MC, Soole, KL, Taylor, NL, Tester, M, Wege, S, Wegner, LH, and Tyerman, SD
- Abstract
Agriculture is expanding into regions that are affected by salinity. This review considers the energetic costs of salinity tolerance in crop plants and provides a framework for a quantitative assessment of costs. Different sources of energy, and modifications of root system architecture that would maximize water vs ion uptake are addressed. Energy requirements for transport of salt (NaCl) to leaf vacuoles for osmotic adjustment could be small if there are no substantial leaks back across plasma membrane and tonoplast in root and leaf. The coupling ratio of the H+‐ATPase also is a critical component. One proposed leak, that of Na+ influx across the plasma membrane through certain aquaporin channels, might be coupled to water flow, thus conserving energy. For the tonoplast, control of two types of cation channels is required for energy efficiency. Transporters controlling the Na+ and Cl− concentrations in mitochondria and chloroplasts are largely unknown and could be a major energy cost. The complexity of the system will require a sophisticated modelling approach to identify critical transporters, apoplastic barriers and root structures. This modelling approach will inform experimentation and allow a quantitative assessment of the energy costs of NaCl tolerance to guide breeding and engineering of molecular components.
- Published
- 2020
3. Energy costs of salinity tolerance in crop plants
- Author
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Tyerman, SD, Munns, R, Fricke, W, Arsova, B, Barkla, BJ, Bose, J, Bramley, H, Byrt, C, Chen, Z, Colmer, TD, Cuin, T, Day, DA, Foster, KJ, Gilliham, M, Henderson, SW, Horie, T, Jenkins, CLD, Kaiser, BN, Katsuhara, M, Plett, D, Miklavcic, SJ, Roy, SJ, Rubio, F, Shabala, S, Shelden, M, Soole, K, Taylor, NL, Tester, M, Watt, M, Wege, S, Wegner, LH, Wen, Z, Tyerman, SD, Munns, R, Fricke, W, Arsova, B, Barkla, BJ, Bose, J, Bramley, H, Byrt, C, Chen, Z, Colmer, TD, Cuin, T, Day, DA, Foster, KJ, Gilliham, M, Henderson, SW, Horie, T, Jenkins, CLD, Kaiser, BN, Katsuhara, M, Plett, D, Miklavcic, SJ, Roy, SJ, Rubio, F, Shabala, S, Shelden, M, Soole, K, Taylor, NL, Tester, M, Watt, M, Wege, S, Wegner, LH, and Wen, Z
- Published
- 2019
4. Enrichment of the Plant Cytosolic Fraction
- Author
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Taylor, NL, Millar, AH, Lao, J, Smith-Moritz, AM, Mortimer, JC, Heazlewood, JL, Taylor, NL, Millar, AH, Lao, J, Smith-Moritz, AM, Mortimer, JC, and Heazlewood, JL
- Abstract
The cytosol is at the core of cellular metabolism and contains many important metabolic pathways, including glycolysis, gluconeogenesis, and the pentose phosphate pathway. Despite the importance of this matrix, few attempts have sought to specifically enrich this compartment from plants. Although a variety of biochemical pathways and signaling cascades pass through the cytosol, much of the focus has usually been targeted at the reactions that occur within membrane-bound organelles of the plant cell. In this chapter, we outline a method for the enrichment of the cytosol from rice suspension cell cultures which includes sample preparation and enrichment as well as validation using immunoblotting and fluorescence-tagged proteins.
- Published
- 2017
5. We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project
- Author
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Tholey, A, Taylor, NL, Heazlewood, JL, Bendixen, E, Tholey, A, Taylor, NL, Heazlewood, JL, and Bendixen, E
- Abstract
Mapping of the human proteome has advanced significantly in recent years and will provide a knowledge base to accelerate our understanding of how proteins and protein networks can affect human health and disease. However, providing solutions to human health challenges will likely fail if insights are exclusively based on studies of human samples and human proteomes. In recent years, it has become evident that human health depends on an integrated understanding of the many species that make human life possible. These include the commensal microorganisms that are essential to human life, pathogens, and food species as well as the classic model organisms that enable studies of biological mechanisms. The Human Proteome Organization (HUPO) initiative on multiorganism proteomes (iMOP) works to support proteome research undertaken on nonhuman species that remain widely under-studied compared with the progress in human proteome research. This perspective argues the need for further research on multiple species that impact human life. We also present an update on recent progress in model organisms, microbiota, and food species, address the emerging problem of antibiotics resistance, and outline how iMOP activities could lead to a more inclusive approach for the human proteome project (HPP) to better support proteome research aimed at improving human health and furthering knowledge on human biology.
- Published
- 2017
6. Enrichment of Golgi Membranes from Triticum aestivum (Wheat) Seedlings
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Taylor, NL, Millar, AH, Zeng, W, Ebert, B, Parsons, HT, Rautengarten, C, Bacic, A, Heazlewood, JL, Taylor, NL, Millar, AH, Zeng, W, Ebert, B, Parsons, HT, Rautengarten, C, Bacic, A, and Heazlewood, JL
- Abstract
The Golgi apparatus is an essential component in the plant secretory pathway. The enrichment of Golgi membranes from plant tissue is fundamental to the study of this structurally complex organelle. The utilization of density centrifugation for the enrichment of Golgi membranes is still the most widely employed isolation technique. Generally, the procedure requires optimization depending on the plant tissue being employed. Here we provide a detailed enrichment procedure that has previously been used to characterize cell wall biosynthetic complexes from wheat seedlings. We also outline several downstream analyses procedures, including nucleoside diphosphatase assays, immunoblotting, and finally localization of putative Golgi proteins by fluorescent tags.
- Published
- 2017
7. Caspase Inhibitors of the P35 Family Are More Active When Purified from Yeast than Bacteria
- Author
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Häcker, G, Brand, IL, Civciristov, S, Taylor, NL, Talbo, GH, Pantaki-Eimany, D, Levina, V, Clem, RJ, Perugini, MA, Kvansakul, M, Hawkins, CJ, Häcker, G, Brand, IL, Civciristov, S, Taylor, NL, Talbo, GH, Pantaki-Eimany, D, Levina, V, Clem, RJ, Perugini, MA, Kvansakul, M, and Hawkins, CJ
- Abstract
Many insect viruses express caspase inhibitors of the P35 superfamily, which prevent defensive host apoptosis to enable viral propagation. The prototypical P35 family member, AcP35 from Autographa californica M nucleopolyhedrovirus, has been extensively studied. Bacterially purified AcP35 has been previously shown to inhibit caspases from insect, mammalian and nematode species. This inhibition occurs via a pseudosubstrate mechanism involving caspase-mediated cleavage of a "reactive site loop" within the P35 protein, which ultimately leaves cleaved P35 covalently bound to the caspase's active site. We observed that AcP35 purifed from Saccharomyces cerevisae inhibited caspase activity more efficiently than AcP35 purified from Escherichia coli. This differential potency was more dramatic for another P35 family member, MaviP35, which inhibited human caspase 3 almost 300-fold more potently when purified from yeast than bacteria. Biophysical assays revealed that MaviP35 proteins produced in bacteria and yeast had similar primary and secondary structures. However, bacterially produced MaviP35 possessed greater thermal stability and propensity to form higher order oligomers than its counterpart purified from yeast. Caspase 3 could process yeast-purified MaviP35, but failed to detectably cleave bacterially purified MaviP35. These data suggest that bacterially produced P35 proteins adopt subtly different conformations from their yeast-expressed counterparts, which hinder caspase access to the reactive site loop to reduce the potency of caspase inhibition, and promote aggregation. These data highlight the differential caspase inhibition by recombinant P35 proteins purified from different sources, and caution that analyses of bacterially produced P35 family members (and perhaps other types of proteins) may underestimate their activity.
- Published
- 2012
8. Effect of a short-term feed outage on broiler performance, live shrink, and processing yields
- Author
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Taylor, NL, primary, Northcutt, JK, additional, and Fletcher, DL, additional
- Published
- 2002
- Full Text
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9. Divergent effects of cannabidiol on the discriminative stimulus and place conditioning effects of Delta(9)-tetrahydrocannabinol.
- Author
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Vann RE, Gamage TF, Warner JA, Marshall EM, Taylor NL, Martin BR, Wiley JL, Vann, Robert E, Gamage, Thomas F, Warner, Jonathan A, Marshall, Ericka M, Taylor, Nathan L, Martin, Billy R, and Wiley, Jenny L
- Abstract
Cannabis sativa (marijuana plant) contains myriad cannabinoid compounds; yet, investigative attention has focused almost exclusively on Delta(9)-tetrahydrocannabinol (THC), its primary psychoactive substituent. Interest in modulation of THC's effects by these other cannabinoids (e.g., cannabidiol (CBD)) has been stimulated anew by recent approval by Canada of Sativex (a 1:1 dose ratio combination of CBD:THC) for the treatment of multiple sclerosis. The goal of this study was to determine the degree to which THC's abuse-related effects were altered by co-administration of CBD. To this end, CBD and THC were assessed alone and in combination in a two-lever THC discrimination procedure in Long-Evans rats and in a conditioned place preference/aversion (CPP/A) model in ICR mice. CBD did not alter the discriminative stimulus effects of THC at any CBD:THC dose ratio tested. In contrast, CBD, at CBD:THC dose ratios of 1:1 and 1:10, reversed CPA produced by acute injection with 10mg/kg THC. When administered alone, CBD did not produce effects in either procedure. These results suggest that CBD, when administered with THC at therapeutically relevant ratios, may ameliorate aversive effects (e.g., dysphoria) often associated with initial use of THC alone. While this effect may be beneficial for therapeutic usage of a CBD:THC combination medication, our discrimination results showing that CBD did not alter THC's discriminative stimulus effects suggest that CBD:THC combination medications may also produce THC-like subjective effects at these dose ratios. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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10. Accounting for the impact of genotype and environment on variation in leaf respiration of wheat in Mexico and Australia.
- Author
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Gaju O, Bloomfield KJ, Negrini ACA, Bowerman AF, Cullerne D, Posch BC, Bryant C, Fan Y, Spence M, Stone B, Gilliham M, Furbank RT, Molero G, Pogson BJ, Mathews K, Millar AH, Pearson AL, Reynolds MP, Stroeher E, Taylor NL, Turnbull MH, and Atkin OK
- Abstract
An approach to improving radiation use efficiency (RUE) in wheat is to screen for variability in rates of leaf respiration in darkness (Rdark). We used a high-throughput system to quantify variation in Rdark among a diverse range of spring wheat genotypes (301 lines) grown in two countries (Mexico and Australia) and two seasons (2017 and 2018), and in doing so quantify the relative importance of genotype (G) and environment (E) in influencing variations in leaf Rdark. Through careful design, residual (unexplained) variation represented less than 10% of the total observed. Up to a third of the variation in Rdark (and related traits) was under genetic control. This suggests opportunities for breeders to use Rdark as a novel selection tool. In addition, E accounted for more than half of the total variation in area-based rates of Rdark. Here, the day of measurement was crucial, suggesting that day-to-day variations in the environment influence rates of Rdark measured at a common temperature. Overall, this study provides new insights into the role G and E play in determining variation in rates of leaf Rdark of one of the most important cereal crops, with implications for future improvements in carbon use efficiency and yield., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
- Published
- 2024
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11. Using EMS data to explore community-level factors associated with firearm violence in North Carolina.
- Author
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Tang Y, Taylor NL, Neuroth LM, Higgins KA, Waller AE, Marshall SW, and Harmon KJ
- Abstract
Background: Firearm violence is a significant public health issue. However, it is unclear if there is an association between the Social Vulnerability Index (SVI) and the intent of both fatal and nonfatal firearm injuries, and if these associations are modified by community race and ethnic composition. This study examines the association between community-level social vulnerability and firearm injury incidence in North Carolina (NC) using 2021-2022 emergency medical services (EMS) data. Additionally, it investigates how these associations vary by the intent of injury (assault, self-inflicted, and unintentional), and whether they are modified by community racial/ethnic composition., Methods: This cross-sectional study utilized NC EMS data, capturing firearm incidents from January 1, 2021, to December 31, 2022. The SVI from the Centers for Disease Control and Prevention (CDC) was used to assess community-level vulnerability. The SVI's racial/ethnic minority status component was removed for stratification analysis. Firearm injury rates were calculated per 100,000 population, and negative binomial regression models were used to estimate Incidence Rate Ratios (IRRs) for different SVI levels and intents of firearm injuries., Results: During the study period, we identified 7,250 EMS encounters at non-healthcare locations related to firearm injuries, encompassing 2,648 NC census tracts. Assault was the leading cause of firearm injuries (n = 3,799), followed by self-inflicted (n = 1,498), and unintentional injuries (n = 722). High-SVI communities had significantly higher rates of firearm injuries compared to low-SVI communities, particularly for assault-related injuries. When the minority status component was excluded from SVI, racial/ethnic minority status emerged as a significant modifier, with higher rates of firearm injuries being observed in communities with larger racial/ethnic minority populations., Conclusion: Community-level social vulnerability is significantly associated with firearm injury incidence, with the effect being more pronounced in racial/ethnic minority communities. These findings underscore the need for targeted public health interventions that address underlying social determinants of health (e.g., access to education) to reduce firearm violence. Future research should further explore the intersection of social vulnerability and racial/ethnic composition to develop effective prevention strategies., (© 2024. The Author(s).)
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- 2024
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12. Metabolic adaptations leading to an enhanced lignification in wheat roots under salinity stress.
- Author
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Dissanayake BM, Staudinger C, Ranathunge K, Munns R, Rupasinghe TW, Taylor NL, and Millar AH
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- Salt Tolerance, Plant Proteins metabolism, Plant Proteins genetics, Cell Wall metabolism, Adaptation, Physiological, Plant Leaves metabolism, Plant Leaves genetics, Plant Leaves physiology, Salinity, Genotype, Sodium metabolism, Triticum genetics, Triticum metabolism, Triticum physiology, Plant Roots metabolism, Plant Roots genetics, Plant Roots physiology, Lignin metabolism, Salt Stress
- Abstract
Analysis of salinity tolerance processes in wheat has focused on salt exclusion from shoots while root phenotypes have received limited attention. Here, we consider the varying phenotypic response of four bread wheat varieties that differ in their type and degree of salt tolerance and assess their molecular responses to salinity and changes in root cell wall lignification. These varieties were Westonia introgressed with Nax1 and Nax2 root sodium transporters (HKT1;4-A and HKT1;5-A) that reduce Na
+ accumulation in leaves, as well as the 'tissue tolerant' Portuguese landrace Mocho de Espiga Branca that has a mutation in the homologous gene HKT1;5-D and has high Na+ concentration in leaves. These three varieties were compared with the relatively more salt-sensitive cultivar Gladius. Through the use of root histochemical analysis, ion concentrations, as well as differential proteomics and targeted metabolomics, we provide an integrated view of the wheat root response to salinity. We show different metabolic re-arrangements in energy conversion, primary metabolic machinery and phenylpropanoid pathway leading to monolignol production in a genotype and genotype by treatment-dependent manner that alters the extent and localisation of root lignification which correlated with an improved capacity of wheat roots to cope better under salinity stress., (© 2024 The Author(s). The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd.)- Published
- 2024
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13. Causal evidence for cholinergic stabilization of attractor landscape dynamics.
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Taylor NL, Whyte CJ, Munn BR, Chang C, Lizier JT, Leopold DA, Turchi JN, Zaborszky L, Műller EJ, and Shine JM
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- Animals, Basal Nucleus of Meynert physiology, Basal Nucleus of Meynert metabolism, Acetylcholine metabolism, Macaca mulatta, Male, Cholinergic Neurons physiology, Cholinergic Neurons metabolism, Cerebral Cortex physiology, Cerebral Cortex metabolism, Neurons metabolism, Neurons physiology, Models, Neurological, Magnetic Resonance Imaging
- Abstract
There is substantial evidence that neuromodulatory systems critically influence brain state dynamics; however, most work has been purely descriptive. Here, we quantify, using data combining local inactivation of the basal forebrain with simultaneous measurement of resting-state fMRI activity in the macaque, the causal role of long-range cholinergic input to the stabilization of brain states in the cerebral cortex. Local inactivation of the nucleus basalis of Meynert (nbM) leads to a decrease in the energy barriers required for an fMRI state transition in cortical ongoing activity. Moreover, the inactivation of particular nbM sub-regions predominantly affects information transfer in cortical regions known to receive direct anatomical projections. We demonstrate these results in a simple neurodynamical model of cholinergic impact on neuronal firing rates and slow hyperpolarizing adaptation currents. We conclude that the cholinergic system plays a critical role in stabilizing macroscale brain state dynamics., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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14. Variation in leaf dark respiration among C3 and C4 grasses is associated with use of different substrates.
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Fan Y, Tcherkez G, Scafaro AP, Taylor NL, Furbank RT, von Caemmerer S, and Atkin OK
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- Photosynthesis, Darkness, Oxygen metabolism, Metabolome, Plant Leaves metabolism, Plant Leaves physiology, Poaceae physiology, Poaceae metabolism, Cell Respiration, Carbon Dioxide metabolism
- Abstract
Measurements of respiratory properties have often been made at a single time point either during daytime using dark-adapted leaves or during nighttime. The influence of the day-night cycle on respiratory metabolism has received less attention but is crucial to understand photosynthesis and photorespiration. Here, we examined how CO2- and O2-based rates of leaf dark respiration (Rdark) differed between midday (after 30-min dark adaptation) and midnight in 8 C3 and C4 grasses. We used these data to calculate the respiratory quotient (RQ; ratio of CO2 release to O2 uptake), and assessed relationships between Rdark and leaf metabolome. Rdark was higher at midday than midnight, especially in C4 species. The day-night difference in Rdark was more evident when expressed on a CO2 than O2 basis, with the RQ being higher at midday than midnight in all species, except in rice (Oryza sativa). Metabolomic analyses showed little correlation of Rdark or RQ with leaf carbohydrates (sucrose, glucose, fructose, or starch) but strong multivariate relationships with other metabolites. The results suggest that rates of Rdark and differences in RQ were determined by several concurrent CO2-producing and O2-consuming metabolic pathways, not only the tricarboxylic acid cycle (organic acids utilization) but also the pentose phosphate pathway, galactose metabolism, and secondary metabolism. As such, Rdark was time-, type- (C3/C4) and species-dependent, due to the use of different substrates., Competing Interests: Conflict of interest statement. None declared., (© The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists.)
- Published
- 2024
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15. Perception of butenolides by Bacillus subtilis via the α/β hydrolase RsbQ.
- Author
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Melville KT, Kamran M, Yao J, Costa M, Holland M, Taylor NL, Fritz G, Flematti GR, and Waters MT
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- Bacillus subtilis, 4-Butyrolactone, Lactones chemistry, Perception, Plant Growth Regulators, Hydrolases genetics, Arabidopsis Proteins genetics
- Abstract
The regulation of behavioral and developmental decisions by small molecules is common to all domains of life. In plants, strigolactones and karrikins are butenolide growth regulators that influence several aspects of plant growth and development, as well as interactions with symbiotic fungi.
1 , 2 , 3 DWARF14 (D14) and KARRIKIN INSENSITIVE2 (KAI2) are homologous enzyme-receptors that perceive strigolactones and karrikins, respectively, and that require hydrolase activity to effect signal transduction.4 , 5 , 6 , 7 RsbQ, a homolog of D14 and KAI2 from the gram-positive bacterium Bacillus subtilis, regulates growth responses to nutritional stress via the alternative transcription factor SigmaB (σB ).8 , 9 However, the molecular function of RsbQ is unknown. Here, we show that RsbQ perceives butenolide compounds that are bioactive in plants. RsbQ is thermally destabilized by the synthetic strigolactone GR24 and its desmethyl butenolide equivalent dGR24. We show that, like D14 and KAI2, RsbQ is a functional butenolide hydrolase that undergoes covalent modification of the catalytic histidine residue. Exogenous application of both GR24 and dGR24 inhibited the endogenous signaling function of RsbQ in vivo, with dGR24 being 10-fold more potent. Application of dGR24 to B. subtilis phenocopied loss-of-function rsbQ mutations and led to a significant downregulation of σB -regulated transcripts. We also discovered that exogenous butenolides promoted the transition from planktonic to biofilm growth. Our results suggest that butenolides may serve as inter-kingdom signaling compounds between plants and bacteria to help shape rhizosphere communities., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2024
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16. Photosynthesis in newly developed leaves of heat-tolerant wheat acclimates to long-term nocturnal warming.
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Coast O, Scafaro AP, Bramley H, Taylor NL, and Atkin OK
- Subjects
- Ribulose-Bisphosphate Carboxylase metabolism, Photosynthesis physiology, Plant Leaves metabolism, Acclimatization, Carbon Dioxide metabolism, Triticum genetics, Hot Temperature
- Abstract
We examined photosynthetic traits of pre-existing and newly developed flag leaves of four wheat genotypes grown in controlled-environment experiments. In newly developed leaves, acclimation of the maximum rate of net CO2 assimilation (An) to warm nights (i.e. increased An) was associated with increased capacity of Rubisco carboxylation and photosynthetic electron transport, with Rubisco activation state probably contributing to increased Rubisco activity. Metabolite profiling linked acclimation of An to greater accumulation of monosaccharides and saturated fatty acids in leaves; these changes suggest roles for osmotic adjustment of leaf turgor pressure and maintenance of cell membrane integrity. By contrast, where An decreased under warm nights, the decline was related to lower stomatal conductance and rates of photosynthetic electron transport. Decreases in An occurred despite higher basal PSII thermal stability in all genotypes exposed to warm nights: Tcrit of 45-46.5 °C in non-acclimated versus 43.8-45 °C in acclimated leaves. Pre-existing leaves showed no change in An-temperature response curves, except for an elite heat-tolerant genotype. These findings illustrate the impact of night-time warming on the ability of wheat plants to photosynthesize during the day, thereby contributing to explain the impact of global warming on crop productivity., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
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- 2024
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17. Abnormal higher-order network interactions in Parkinson's disease visual hallucinations.
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Tan JB, Müller EJ, Orlando IF, Taylor NL, Margulies DS, Szeto J, Lewis SJG, Shine JM, and O'Callaghan C
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- Humans, Magnetic Resonance Imaging methods, Hallucinations etiology, Brain diagnostic imaging, Brain Mapping, Parkinson Disease complications
- Abstract
Visual hallucinations in Parkinson's disease can be viewed from a systems-level perspective, whereby dysfunctional communication between brain networks responsible for perception predisposes a person to hallucinate. To this end, abnormal functional interactions between higher-order and primary sensory networks have been implicated in the pathophysiology of visual hallucinations in Parkinson's disease, however the precise signatures remain to be determined. Dimensionality reduction techniques offer a novel means for simplifying the interpretation of multidimensional brain imaging data, identifying hierarchical patterns in the data that are driven by both within- and between-functional network changes. Here, we applied two complementary non-linear dimensionality reduction techniques-diffusion-map embedding and t-distributed stochastic neighbour embedding (t-SNE)-to resting state functional MRI data, in order to characterize the altered functional hierarchy associated with susceptibility to visual hallucinations. Our study involved 77 people with Parkinson's disease (31 with hallucinations; 46 without hallucinations) and 19 age-matched healthy control subjects. In patients with visual hallucinations, we found compression of the unimodal-heteromodal gradient consistent with increased functional integration between sensory and higher order networks. This was mirrored in a traditional functional connectivity analysis, which showed increased connectivity between the visual and default mode networks in the hallucinating group. Together, these results suggest a route by which higher-order regions may have excessive influence over earlier sensory processes, as proposed by theoretical models of hallucinations across disorders. By contrast, the t-SNE analysis identified distinct alterations in prefrontal regions, suggesting an additional layer of complexity in the functional brain network abnormalities implicated in hallucinations, which was not apparent in traditional functional connectivity analyses. Together, the results confirm abnormal brain organization associated with the hallucinating phenotype in Parkinson's disease and highlight the utility of applying convergent dimensionality reduction techniques to investigate complex clinical symptoms. In addition, the patterns we describe in Parkinson's disease converge with those seen in other conditions, suggesting that reduced hierarchical differentiation across sensory-perceptual systems may be a common transdiagnostic vulnerability in neuropsychiatric disorders with perceptual disturbances., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2024
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18. Comparative analysis of injury identification using KABCO and ISS in linked North Carolina trauma registry and crash data.
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Taylor NL, Fliss MD, Schiro SE, and Harmon KJ
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- Humans, North Carolina epidemiology, Male, Female, Adult, Middle Aged, Adolescent, Young Adult, Aged, Child, Child, Preschool, Infant, Sensitivity and Specificity, Infant, Newborn, Registries, Accidents, Traffic statistics & numerical data, Injury Severity Score, Police, Wounds and Injuries epidemiology, Wounds and Injuries classification
- Abstract
Objective: The purpose of this study was to examine differences between police-reported injury severity and trauma registry data among persons with linked records in North Carolina and quantify the degree of alignment., Methods: We analyzed linked North Carolina trauma registry and motor vehicle crash data from 2018. Injury severity identification was assessed using police-reported 5-point scale KABCO from crash data and Injury Severity Score (ISS) from trauma records. The analysis was stratified by age, sex/gender, race, ethnicity, and road users type to examine differences across groups. We calculated sensitivity, specificity, positive predictive values, and negative predictive values between police-reported injury severity and trauma registry data using ISS as the gold standard., Results: A higher proportion of patients were classified as suspected minor injuries (39.0%) compared to moderate injuries in trauma registry (25.1%). Police-reported crash data underreported injury severity when compared to trauma registry data. Police-reported KABCO had a higher degree of specificity when classifying minor injuries (79.3%) but substantially underestimated seriously injured patients, with a sensitivity of 49.9%. These findings were also consistent when stratified by subpopulations., Conclusion: Hospital-based motor vehicle crash data are a main source of injury severity identification for road safety. Police-reported data were relatively accurate for minor injuries but not seriously injured patients. Understanding the characteristics of each data source both separately and linked will be critical for problem identification and program development to move toward a safe transportation system for all road users.
- Published
- 2024
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19. Causes of Low Milk Supply: The Roles of Estrogens, Progesterone, and Related External Factors.
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Jin X, Perrella SL, Lai CT, Taylor NL, and Geddes DT
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- Female, Humans, Animals, Milk, Lactation, Obesity, Progesterone pharmacology, Estrogens pharmacology
- Abstract
Low milk supply (LMS) poses a significant challenge to exclusive and continued breastfeeding, affecting ∼10% to 15% of mothers. Milk production is intricately regulated by both endocrine and autocrine control mechanisms, with estrogens and progesterone playing pivotal roles in this process. In addition to endogenously produced hormones, external substances capable of interfering with normal hormonal actions, including phytoestrogens, mycoestrogens, synthetic estrogens, and hormonal contraceptives, can influence milk production. The effects of these extrinsic hormones on milk production may vary based on maternal body mass index. This comprehensive review examines the multifaceted causes of LMS, focusing on the involvement of estrogens, progesterone, and related external factors in milk production. Furthermore, it investigates the interplay between hormonal factors and obesity, aiming to elucidate the endocrine mechanisms underlying obesity-associated LMS. Insights from this review provide valuable perspectives for developing interventions to improve milk production and address the challenges associated with LMS., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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20. Oestrogens and progesterone in human milk and their effects on infant health outcomes: A narrative review.
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Jin X, Perrella SL, Lai CT, Taylor NL, and Geddes DT
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- Infant, Female, Humans, Infant Health, Breast Feeding, Lactation physiology, Estrogens, Milk, Human, Progesterone
- Abstract
Human milk (HM) is a complex biological system that contains a wide range of bioactive components including oestrogens and progesterone. Whilst maternal oestrogens and progesterone concentrations drop rapidly after birth, they remain detectable in HM across lactation. Phytoestrogens and mycoestrogens, which are produced by plants and fungi, are also present in HM and can interact with oestrogen receptors to interfere with normal hormone functions. Despite the potential impact of HM oestrogens and progesterone on the infant, limited research has addressed their impact on the growth and health of breastfed infants. Furthermore, it is important to comprehensively understand the factors that contribute to these hormone levels in HM, in order to establish effective intervention strategies. In this review, we have summarized the concentrations of naturally occurring oestrogens and progesterone in HM from both endogenous and exogenous sources and discussed both maternal factors impacting HM levels and relationships with infant growth., Competing Interests: Declaration of Competing Interest Sharon Lisa Perrella, Ching Tat Lai and Donna Tracy Geddes are supported by an unrestricted research grant from Medela AG, administered by The University of Western Australia. Xuehua Jin is supported by China Scholarship Council–The University of Western Australia Joint PhD Scholarship. The funding bodies were not involved in the manuscript design, data interpretation, or the decision to publish the results., (Copyright © 2023 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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21. Hospital to Outpatient Transitions of Care for Tobacco Treatment.
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Cruvinel E, Ellerbeck E, Richter KP, Taylor NL, Shergina E, Nazir N, and Scheuermann TS
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- Humans, Outpatients, Ambulatory Care, Hospitals, Nicotiana, Smoking Cessation
- Published
- 2023
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22. Underlying factors determining grain morphologies in high-strength titanium alloys processed by additive manufacturing.
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Nartu MSKKY, Welk BA, Mantri SA, Taylor NL, Viswanathan GB, Dahotre NB, Banerjee R, and Fraser HL
- Abstract
In recent research, additions of solute to Ti and some Ti-based alloys have been employed to produce equiaxed microstructures when processing these materials using additive manufacturing. The present study develops a computational scheme for guiding the selection of such alloying additions, and the minimum amounts required, to effect the columnar to equiaxed microstructural transition. We put forward two physical mechanisms that may produce this transition; the first and more commonly discussed is based on growth restriction factors, and the second on the increased freezing range effected by the alloying addition coupled with the imposed rapid cooling rates associated with AM techniques. We show in the research described here, involving a number of model binary as well as complex multi-component Ti alloys, and the use of two different AM approaches, that the latter mechanism is more reliable regarding prediction of the grain morphology resulting from given solute additions., (© 2023. The Author(s).)
- Published
- 2023
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23. A whole new world: embracing the systems-level to understand the indirect impact of pathology in neurodegenerative disorders.
- Author
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Taylor NL and Shine JM
- Subjects
- Humans, Brain pathology, Cognition, Neuropathology, Neurodegenerative Diseases, Parkinson Disease, Alzheimer Disease
- Abstract
The direct link between neuropathology and the symptoms that emerge from damage to the brain is often difficult to discern. In this perspective, we argue that a satisfying account of neurodegenerative symptoms most naturally emerges from the consideration of the brain from the systems-level. Specifically, we will highlight the role of the neuromodulatory arousal system, which is uniquely positioned to coordinate the brain's ability to flexibly integrate the otherwise segregated structures required to support higher cognitive functions. Importantly, the neuromodulatory arousal system is highly heterogeneous, encompassing structures that are common sites of neurodegeneration across Alzheimer's and Parkinson's disease. We will review studies that implicate the dysfunctional interactions amongst distributed brain regions as a side-effect of pathological involvement of the neuromodulatory arousal system in these neurodegenerative disorders. From this perspective, we will argue that future work in clinical neuroscience should attempt to consider the inherent complexity in the brain and employ analytic techniques that do not solely focus on regional functional impairments, but rather captures the brain as an inherently dynamic, distributed, multi-scale system. Through this lens, we hope that we will devise new and improved diagnostic markers and interventional approaches to aid in the treatment of neurodegenerative disorders., (© 2022. Crown.)
- Published
- 2023
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24. Structural Racism and Pedestrian Safety: Measuring the Association Between Historical Redlining and Contemporary Pedestrian Fatalities Across the United States, 2010‒2019.
- Author
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Taylor NL, Porter JM, Bryan S, Harmon KJ, and Sandt LS
- Subjects
- Humans, United States epidemiology, Transportation, Accidents, Traffic, Systemic Racism, Pedestrians
- Abstract
Objectives. To examine the association between historical redlining and contemporary pedestrian fatalities across the United States. Methods. We analyzed 2010-2019 traffic fatality data, obtained from the Fatality Analysis Reporting System, for all US pedestrian fatalities linked by location of crash to 1930s Home Owners' Loan Corporation (HOLC) grades and current sociodemographic factors at the census tract level. We applied generalized estimating equation models to assess the relationship between the count of pedestrian fatalities and redlining. Results. In an adjusted multivariable analysis, tracts graded D ("Hazardous") had a 2.60 (95% confidence interval = 2.26, 2.99) incidence rate ratio (per residential population) of pedestrian fatalities compared with tracts graded A ("Best"). We found a significant dose‒response relationship: as grades worsened from A to D, rates of pedestrian fatalities increased. Conclusions. Historical redlining policy, initiated in the 1930s, has an impact on present-day transportation inequities in the United States. Public Health Implications. To reduce transportation inequities, understanding how structurally racist policies, past and present, have an impact on community-level investments in transportation and health is crucial. ( Am J Public Health . 2023;113(4):420-428. https://doi.org/10.2105/AJPH.2022.307192).
- Published
- 2023
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25. Modulating arousal to overcome gait impairments in Parkinson's disease: how the noradrenergic system may act as a double-edged sword.
- Author
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Tosserams A, Bloem BR, Ehgoetz Martens KA, Helmich RC, Kessels RPC, Shine JM, Taylor NL, Wainstein G, Lewis SJG, and Nonnekes J
- Subjects
- Humans, Brain, Gait physiology, Surveys and Questionnaires, Arousal, Parkinson Disease complications
- Abstract
In stressful or anxiety-provoking situations, most people with Parkinson's disease (PD) experience a general worsening of motor symptoms, including their gait impairments. However, a proportion of patients actually report benefits from experiencing-or even purposely inducing-stressful or high-arousal situations. Using data from a large-scale international survey study among 4324 people with PD and gait impairments within the online Fox Insight (USA) and ParkinsonNEXT (NL) cohorts, we demonstrate that individuals with PD deploy an array of mental state alteration strategies to cope with their gait impairment. Crucially, these strategies differ along an axis of arousal-some act to heighten, whereas others diminish, overall sympathetic tone. Together, our observations suggest that arousal may act as a double-edged sword for gait control in PD. We propose a theoretical, neurobiological framework to explain why heightened arousal can have detrimental effects on the occurrence and severity of gait impairments in some individuals, while alleviating them in others. Specifically, we postulate that this seemingly contradictory phenomenon is explained by the inherent features of the ascending arousal system: namely, that arousal is related to task performance by an inverted u-shaped curve (the so-called Yerkes and Dodson relationship). We propose that the noradrenergic locus coeruleus plays an important role in modulating PD symptom severity and expression, by regulating arousal and by mediating network-level functional integration across the brain. The ability of the locus coeruleus to facilitate dynamic 'cross-talk' between distinct, otherwise largely segregated brain regions may facilitate the necessary cerebral compensation for gait impairments in PD. In the presence of suboptimal arousal, compensatory networks may be too segregated to allow for adequate compensation. Conversely, with supraoptimal arousal, increased cross-talk between competing inputs of these complementary networks may emerge and become dysfunctional. Because the locus coeruleus degenerates with disease progression, finetuning of this delicate balance becomes increasingly difficult, heightening the need for mental strategies to self-modulate arousal and facilitate shifting from a sub- or supraoptimal state of arousal to improve gait performance. Recognition of this underlying mechanism emphasises the importance of PD-specific rehabilitation strategies to alleviate gait disability., (© 2023. The Author(s).)
- Published
- 2023
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26. Mixed method assessment of built environment and policy responses to the COVID-19 pandemic by United States municipalities focusing on walking and bicycling actions.
- Author
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Evenson KR, Naumann RB, Taylor NL, LaJeunesse S, and Combs TS
- Abstract
Introduction: In 2020, the COVID-19 pandemic prompted community officials to initiate local level environmental and policy changes to slow the spread of infection and provide more opportunities for outdoor recreation. Changes in both regards could positively or negatively impact walking and bicycling. Using a mixed methods approach, the purpose of this United States-based study was to systematically describe municipal response to the pandemic at the community level through environmental and policy changes that may have impacted walking and bicycling., Methods: Websites of all United States' municipalities with a residential population of at least 100,000 (n = 314) were searched to identify environmental and policy changes that might impact walking/bicycling as a result of the pandemic. When actions were identified, we systematically abstracted information from the websites. To provide more contextual information, we interviewed representatives from 12 municipalities about changes made at the municipal level as a result of the pandemic that could impact walking and bicycling. Interviews were recorded, transcribed, and coded for themes., Results: For the 314 municipalities, we identified 353 actions resulting from the COVID-19 pandemic that may impact walking and bicycling. Approximately double the number of actions were identified in large-size municipalities (234 actions in 157 municipalities with population≥165,000) compared to mid-size municipalities (119 actions among 157 municipalities with population 100,000 to 164,999). Generally, fewer actions that might suppress walking and bicycling (n = 59) were identified in comparison to actions that would likely facilitate walking and bicycling (n = 294). In-depth interviews provided further context and insight into these results., Conclusion: This mixed-method assessment provides an overview of the environmental and policy changes which may impact walking and bicycling that municipalities implemented in 2020 due to the pandemic. A next step in this line of inquiry is to quantify the impact of these changes on population levels of walking and bicycling and related health and safety outcomes., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (© 2022 Elsevier Ltd. All rights reserved.)
- Published
- 2023
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27. Enhancing crop yields through improvements in the efficiency of photosynthesis and respiration.
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Garcia A, Gaju O, Bowerman AF, Buck SA, Evans JR, Furbank RT, Gilliham M, Millar AH, Pogson BJ, Reynolds MP, Ruan YL, Taylor NL, Tyerman SD, and Atkin OK
- Subjects
- Adenosine Triphosphate metabolism, Photosynthesis, Ribulose-Bisphosphate Carboxylase metabolism, Carbon Dioxide metabolism, Crops, Agricultural physiology, Cytochrome P-450 CYP2B1 metabolism
- Abstract
The rate with which crop yields per hectare increase each year is plateauing at the same time that human population growth and other factors increase food demand. Increasing yield potential ( Y p ) of crops is vital to address these challenges. In this review, we explore a component of Y p that has yet to be optimised - that being improvements in the efficiency with which light energy is converted into biomass ( ε c ) via modifications to CO
2 fixed per unit quantum of light (α), efficiency of respiratory ATP production ( ε prod ) and efficiency of ATP use ( ε use ). For α, targets include changes in photoprotective machinery, ribulose bisphosphate carboxylase/oxygenase kinetics and photorespiratory pathways. There is also potential for ε prod to be increased via targeted changes to the expression of the alternative oxidase and mitochondrial uncoupling pathways. Similarly, there are possibilities to improve ε use via changes to the ATP costs of phloem loading, nutrient uptake, futile cycles and/or protein/membrane turnover. Recently developed high-throughput measurements of respiration can serve as a proxy for the cumulative energy cost of these processes. There are thus exciting opportunities to use our growing knowledge of factors influencing the efficiency of photosynthesis and respiration to create a step-change in yield potential of globally important crops., (© 2022 The Authors. New Phytologist © 2022 New Phytologist Foundation.)- Published
- 2023
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28. Structural connections between the noradrenergic and cholinergic system shape the dynamics of functional brain networks.
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Taylor NL, D'Souza A, Munn BR, Lv J, Zaborszky L, Müller EJ, Wainstein G, Calamante F, and Shine JM
- Subjects
- Cholinergic Agents, Humans, Locus Coeruleus diagnostic imaging, Magnetic Resonance Imaging methods, Basal Nucleus of Meynert, Brain
- Abstract
Complex cognitive abilities are thought to arise from the ability of the brain to adaptively reconfigure its internal network structure as a function of task demands. Recent work has suggested that this inherent flexibility may in part be conferred by the widespread projections of the ascending arousal systems. While the different components of the ascending arousal system are often studied in isolation, there are anatomical connections between neuromodulatory hubs that we hypothesise are crucial for mediating key features of adaptive network dynamics, such as the balance between integration and segregation. To test this hypothesis, we estimated the strength of structural connectivity between key hubs of the noradrenergic and cholinergic arousal systems (the locus coeruleus [LC] and nucleus basalis of Meynert [nbM], respectively). We then asked whether the strength of structural LC and nbM inter-connectivity was related to individual differences in the emergent, dynamical signatures of functional integration measured from resting state fMRI data, such as network and attractor topography. We observed a significant positive relationship between the strength of white-matter connections between the LC and nbM and the extent of network-level integration following BOLD signal peaks in LC relative to nbM activity. In addition, individuals with denser white-matter streamlines interconnecting neuromodulatory hubs also demonstrated a heightened ability to shift to novel brain states. These results suggest that individuals with stronger structural connectivity between the noradrenergic and cholinergic systems have a greater capacity to mediate the flexible network dynamics required to support complex, adaptive behaviour. Furthermore, our results highlight the underlying static features of the neuromodulatory hubs can impose some constraints on the dynamic features of the brain., Competing Interests: Declarations of Competing Interest None., (Copyright © 2022. Published by Elsevier Inc.)
- Published
- 2022
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29. The Contribution of Noradrenergic Activity to Anxiety-Induced Freezing of Gait.
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Taylor NL, Wainstein G, Quek D, Lewis SJG, Shine JM, and Ehgoetz Martens KA
- Subjects
- Anxiety etiology, Gait, Humans, Quality of Life, Gait Disorders, Neurologic, Parkinson Disease
- Abstract
Background: Freezing of gait is a complex paroxysmal phenomenon that is associated with a variety of sensorimotor, cognitive and affective deficits, and significantly impacts quality of life in patients with Parkinson's disease (PD). Despite a growing body of evidence that suggests anxiety may be a crucial contributor to freezing of gait, no research study to date has investigated neural underpinnings of anxiety-induced freezing of gait., Objective: Here, we aimed to investigate how anxiety-inducing contexts might "set the stage for freezing," through the ascending arousal system, by examining an anxiety-inducing virtual reality gait paradigm inside functional magnetic resonance imaging (fMRI)., Methods: We used a virtual reality gait paradigm that has been validated to elicit anxiety by having participants navigate a virtual plank, while simultaneously collecting task-based fMRI from individuals with idiopathic PD with confirmed freezing of gait., Results: First, we established that the threatening condition provoked more freezing when compared to the non-threatening condition. By using a dynamic connectivity analysis, we identified patterns of increased "cross-talk" within and between motor, limbic, and cognitive networks in the threatening conditions. We established that the threatening condition was associated with heightened network integration. We confirmed the sympathetic nature of this phenomenon by demonstrating an increase in pupil dilation during the anxiety-inducing condition of the virtual reality gait paradigm in a secondary experiment., Conclusions: In conclusion, our findings represent a neurobiological mechanistic pathway through which heightened sympathetic arousal related to anxiety could foster increased "cross-talk" between distributed cortical networks that ultimately manifest as paroxysmal episodes of freezing of gait. © 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society., (© 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.)
- Published
- 2022
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30. Distinct salinity-induced changes in wheat metabolic machinery in different root tissue types.
- Author
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Dissanayake BM, Staudinger C, Munns R, Taylor NL, and Millar AH
- Subjects
- Humans, Plant Roots metabolism, Proteome metabolism, Proteomics, Salt Tolerance, Stress, Physiological, Salinity, Triticum metabolism
- Abstract
The impact of salinity on wheat plants is often studied by analysis of shoot responses, even though the main mechanism of tolerance is shoot Na
+ exclusion. Wheat roots directly experience rising NaCl concentrations and show more physiological responses in root tips than in mature roots and altered responses with time; but the molecular reason for these differential responses is unclear. We have found that there is a distinct difference between the proteome responses of wheat root tip and mature root tissues to salinity. Translation and protein synthesis related proteins showed a significant decrease in abundance, most of the glycolytic enzymes and selected TCA cycle enzymes and ATP synthase subunits were significantly decreased in abundance under salt stress in root tips only. The root tip response in wheat indicates the protein synthesis capacity and energy production were impaired under salt stress which correlated with the anatomical response of root growth decrease and its respiratory rate. Wheat root responses are direct and rapid effects of the soil salinity in this species, therefore shoot responses such as reduction in shoot growth and photosynthetic capacity need to be considered in light of these effects on root metabolism. SIGNIFICANCE: Salinity is a critical environmental factor limiting crop production throughout the world. Wheat (Triticum aestivum) is the most significant cereal crop for human nutrition and both its growth and yield is negatively impacted by salinity. Salinity stress is known to impose osmotic stress in plants during the initial phase of exposure and ion toxicity in the later stages of development. Roots are the first plant organ to perceive the salt. However, intensive breading approaches to develop salt tolerant crops have mainly focussed on exclusion of salt from above ground tissues, and only achieved limited success to date. Wheat roots physiologically respond to salinity by overall reduction in the length of seminal roots. The stunting of the wheat root system is considered to be a result of higher sensitivity of root tips to salinity. However, the metabolic changes that underpin selective root tip sensitivity is largely unknown. Here, we carried out non-targeted profiling of mature root versus root tip proteomes under control and salt stress conditions. We found distinct changes in abundance of proteins involved in carbon and energy metabolism and protein metabolism in mature roots and root tips in response to salt stress. We further investigated the impact of these changes on metabolic machinery in the wheat root proteome using a targeted MS approach. We found evidence that protein synthesis and energy production machinery becomes limiting in root tips, while the same processes in mature root remains less affected by salt stress. Our proteomic data explain the impairment of root growth and physiological characteristics as well as improve the understanding of wheat root responses under salinity which is an essential first step for further investigation of molecular traits underpinning root characteristics to improve salt tolerance of wheat., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2022
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31. Assessment of Mitochondrial Protein Composition and Purity by Mass Spectroscopy.
- Author
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Tang A, Wang Y, and Taylor NL
- Subjects
- Electrophoresis, Gel, Two-Dimensional, Mitochondrial Proteins, Proteomics, Mass Spectrometry, Proteome
- Abstract
While the routine mitochondrial extraction and isolation protocols have not fundamentally changed since the introduction of density gradients, the approaches we use to examine the proteome have. The initial characterisation of mitochondrial proteomes was carried out using two-dimensional gel electrophoresis in 2001 and gel spot mass spectrometry have now largely been superseded as the throughput and sensitivity of commercial mass spectrometers increases. Whist many of these early studies established the components of the mitochondrial proteome, as gels were replaced by gel free approaches the numbers of confirmed components rapidly increased. In this chapter we present gel-based approaches for the separation and concentration of mitochondrial proteins for their characterization by mass spectrometry. We also describe two gel-free approaches which can be used to quantity the degree of contamination arising during the isolation of mitochondria. These approaches are equally suitable for studies comparing one treatment to another., (© 2022. Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
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32. Depressive Symptoms and Drinking to Cope in Relation to Alcohol Use Outcomes among White and Black/African American College Students.
- Author
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Taylor NL, Su J, and Dick DM
- Subjects
- Adaptation, Psychological, Adult, Alcohol Drinking epidemiology, Depression complications, Depression epidemiology, Female, Humans, Male, Students, Surveys and Questionnaires, Universities, Black or African American, Alcohol Drinking psychology, Alcohol Drinking in College ethnology, Alcoholism ethnology, Depression ethnology
- Abstract
Objective: Prior research shows that Black/African American adults experience more negative alcohol use consequences than White adults, despite lower alcohol consumption. Research also shows that Black/African Americans experience higher rates of depression, which can increase risk for alcohol consumption and alcohol use disorder (AUD) through drinking to cope. We examined associations between depressive symptoms and drinking to cope with alcohol consumption and AUD symptoms among White and Black/African American college students., Methods: Participants completed an online survey during the fall and spring semester of their first year of college (N = 2,168, 62.8% female, 75.8% White). Path analyses were conducted to examine whether depressive symptoms and drinking to cope mediated the association between race/ethnicity and alcohol use outcomes, and whether race/ethnicity moderated the associations between depressive symptoms, drinking to cope, and alcohol use outcomes., Results: Results indicated that Black/African Americans had lower levels of depressive symptoms, which were associated with lower drinking to cope, and in turn associated with lower alcohol consumption and AUD symptoms. Multigroup analysis indicated that the pattern of associations between depressive symptoms, drinking to cope, and alcohol use outcomes were largely similar between White and Black/African American college students and between males and females, except that the association between depressive symptoms and drinking to cope appeared to be stronger for Whites than for Black/African American students., Conclusion: Depressive symptoms and drinking to cope are risk factors in relation to alcohol use outcomes among White and Black/African American college students and partially account for the link between race/ethnicity and alcohol use outcomes., Supplemental data for this article is available online at https://doi.org/10.1080/10826084.2022.2034871 .
- Published
- 2022
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33. Structural and Functional Correlates of Hallucinations and Illusions in Parkinson's Disease.
- Author
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Marques A, Taylor NL, Roquet D, Beze S, Chassain C, Pereira B, O'Callaghan C, Lewis SJG, and Durif F
- Subjects
- Brain diagnostic imaging, Case-Control Studies, Gray Matter, Hallucinations diagnostic imaging, Hallucinations etiology, Humans, Magnetic Resonance Imaging methods, Illusions, Parkinson Disease complications, Parkinson Disease diagnostic imaging
- Abstract
Background: Visual illusions (VI) in Parkinson's disease (PD) are generally considered as an early feature of the psychosis spectrum leading to fully formed visual hallucinations (VH), although this sequential relationship has not been clearly demonstrated., Objective: We aimed to determine whether there are any overlapping, potentially graded patterns of structural and functional connectivity abnormalities in PD with VI and with VH. Such a finding would argue for a continuum between these entities, whereas distinct imaging features would suggest different neural underpinnings for the phenomena., Methods: In this case control study, we compared structural and resting state functional MRI brain patterns of PD patients with VH (PD-H, n = 20), with VI (PD-I, n = 19), and without VH or VI (PD-C, n = 23)., Results: 1) PD-H had hypo-connectivity between the ILO and anterior cingulate precuneus and parahippocampal gyrus compared to PD-C and PD-I; 2) In contrast, PD-I had hyper-connectivity between the inferior frontal gyrus and the postcentral gyrus compared to PD-C and PD-H. Moreover, PD-I had higher levels of functional connectivity between the amygdala, hippocampus, insula, and fronto-temporal regions compared to PD-H, together with divergent patterns toward the cingulate. 3) Both PD-I and PD-H had functional hypo-connectivity between the lingual gyrus and the parahippocampal region vs. PD-C, and no significant grey matter volume differences was observed between PD-I and PD-H., Conclusion: Distinct patterns of functional connectivity characterized VI and VH in PD, suggesting that these two perceptual experiences, while probably linked and driven by at least some similar mechanisms, could reflect differing neural dysfunction.
- Published
- 2022
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34. Limbic hypoconnectivity in idiopathic REM sleep behaviour disorder with impulse control disorders.
- Author
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Marques A, Roquet D, Matar E, Taylor NL, Pereira B, O'Callaghan C, and Lewis SJG
- Subjects
- Brain diagnostic imaging, Gray Matter, Humans, Magnetic Resonance Imaging, Disruptive, Impulse Control, and Conduct Disorders complications, Disruptive, Impulse Control, and Conduct Disorders diagnostic imaging, REM Sleep Behavior Disorder complications, REM Sleep Behavior Disorder diagnostic imaging
- Abstract
Introduction: Current neuroimaging research has revealed several brain alterations in idiopathic REM sleep behaviour disorder (iRBD) that mirror and precede those reported in PD. However, none have specifically addressed the presence of changes across the reward system, and their role in the emergence of impulse control disorders (ICDs). We aimed to compare the volumetric and functional connectivity characteristics of the reward system in relation to the psychobehavioral profile of patients with iRBD versus healthy controls and PD patients., Methods: Twenty patients with polysomnography confirmed iRBD along with 17 PD patients and 14 healthy controls (HC) underwent structural and functional resting-state brain MRI analysis. Participants completed the questionnaire for impulsive-compulsive disorders in PD (QUIP), the short UPPS-P impulsive behaviour scale, as well as neuropsychological testing of cognitive function., Results: A higher percentage of iRBD patients reported hypersexuality, compared to HC and PD (p = 0.008). Whole-brain and striatal voxel-based morphometry analyses showed no significant clusters of reduced grey matter volume between groups. However, iRBD compared to HC demonstrated functional hypoconnectivity between the limbic striatum and temporo-occipital regions. Furthermore, the presence of ICDs correlated with hypoconnectivity between the limbic striatum and clusters located in cuneus, lingual and fusiform gyrus., Conclusion: Altered functional connectivity between the limbic striatum and posterior cortical regions was associated with increased hypersexuality in iRBD. It is possible that this change may ultimately predispose individuals to the emergence of ICDs when they receive dopaminergic medications, after transitioning to PD., (© 2021. Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2021
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35. Addressing Research Bottlenecks to Crop Productivity.
- Author
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Reynolds M, Atkin OK, Bennett M, Cooper M, Dodd IC, Foulkes MJ, Frohberg C, Hammer G, Henderson IR, Huang B, Korzun V, McCouch SR, Messina CD, Pogson BJ, Slafer GA, Taylor NL, and Wittich PE
- Subjects
- Crops, Agricultural genetics, Genomics, Phenotype, Crop Production, Plant Breeding
- Abstract
Asymmetry of investment in crop research leads to knowledge gaps and lost opportunities to accelerate genetic gain through identifying new sources and combinations of traits and alleles. On the basis of consultation with scientists from most major seed companies, we identified several research areas with three common features: (i) relatively underrepresented in the literature; (ii) high probability of boosting productivity in a wide range of crops and environments; and (iii) could be researched in 'precompetitive' space, leveraging previous knowledge, and thereby improving models that guide crop breeding and management decisions. Areas identified included research into hormones, recombination, respiration, roots, and source-sink, which, along with new opportunities in phenomics, genomics, and bioinformatics, make it more feasible to explore crop genetic resources and improve breeding strategies., Competing Interests: Declaration of Interests The authors have no interests to declare., (Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2021
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36. Diel- and temperature-driven variation of leaf dark respiration rates and metabolite levels in rice.
- Author
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Rashid FAA, Scafaro AP, Asao S, Fenske R, Dewar RC, Masle J, Taylor NL, and Atkin OK
- Subjects
- Carbon Dioxide, Cell Respiration, Photosynthesis, Plant Leaves, Respiratory Rate, Temperature, Oryza
- Abstract
Leaf respiration in the dark (R
dark ) is often measured at a single time during the day, with hot-acclimation lowering Rdark at a common measuring temperature. However, it is unclear whether the diel cycle influences the extent of thermal acclimation of Rdark , or how temperature and time of day interact to influence respiratory metabolites. To examine these issues, we grew rice under 25°C : 20°C, 30°C : 25°C and 40°C : 35°C day : night cycles, measuring Rdark and changes in metabolites at five time points spanning a single 24-h period. Rdark differed among the treatments and with time of day. However, there was no significant interaction between time and growth temperature, indicating that the diel cycle does not alter thermal acclimation of Rdark . Amino acids were highly responsive to the diel cycle and growth temperature, and many were negatively correlated with carbohydrates and with organic acids of the tricarboxylic acid (TCA) cycle. Organic TCA intermediates were significantly altered by the diel cycle irrespective of growth temperature, which we attributed to light-dependent regulatory control of TCA enzyme activities. Collectively, our study shows that environmental disruption of the balance between respiratory substrate supply and demand is corrected for by shifts in TCA-dependent metabolites., (© 2020 The Authors. New Phytologist © 2020 New Phytologist Trust.)- Published
- 2020
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37. Can Alternative Metabolic Pathways and Shunts Overcome Salinity Induced Inhibition of Central Carbon Metabolism in Crops?
- Author
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Bandehagh A and Taylor NL
- Abstract
The annual cost of lost crop production from exposure to salinity has major impacts on food security in all parts of the world. Salinity stress disturbs energy metabolism and knowledge of the impacts on critical processes controlling plant energy production is key to successfully breeding salt tolerant crops. To date, little progress has been achieved using classic breeding approaches to develop salt tolerance. The hope of some salinity researchers is that through a better understanding of the metabolic responses and adaptation to salinity exposure, new breeding targets can be suggested to help develop salt tolerant crops. Plants sense and react to salinity through a complex system of sensors, receptor systems, transporters, signal transducers, and gene expression regulators in order to control the uptake of salts and to induce tolerant metabolism that jointly leads to changes in growth rate and biomass production. During this response, there must be a balance between supply of energy from mitochondria and chloroplasts and energy demands for water and ion transport, growth, and osmotic adjustment. The photosynthetic response to salinity has been thoroughly researched and generally we see a sharp drop in photosynthesis after exposure to salinity. However, less attention has been given to the effect of salt stress on plant mitochondrial respiration and the metabolic processes that influence respiratory rate. A further complication is the wide range of respiratory responses that have been observed in different plant species, which have included major and minor increases, decreases, and no change in respiratory rate after salt exposure. In this review, we begin by considering physiological and biochemical impacts of salinity on major crop plants. We then summarize and consider recent advances that have characterized changes in abundance of metabolites that are involved in respiratory pathways and their alternative routes and shunts in terms of energy metabolism in crop plants. We will consider the diverse molecular responses of cellular plant metabolism during salinity exposure and suggest how these metabolic responses might aid in salinity tolerance. Finally, we will consider how this commonality and diversity should influence how future research of the salinity responses of crops plants should proceed., (Copyright © 2020 Bandehagh and Taylor.)
- Published
- 2020
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38. Shaking with fear: the role of noradrenaline in modulating resting tremor.
- Author
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Taylor NL, Müller EJ, and Shine JM
- Subjects
- Fear, Humans, Norepinephrine, Tremor
- Published
- 2020
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39. Energy costs of salt tolerance in crop plants.
- Author
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Munns R, Day DA, Fricke W, Watt M, Arsova B, Barkla BJ, Bose J, Byrt CS, Chen ZH, Foster KJ, Gilliham M, Henderson SW, Jenkins CLD, Kronzucker HJ, Miklavcic SJ, Plett D, Roy SJ, Shabala S, Shelden MC, Soole KL, Taylor NL, Tester M, Wege S, Wegner LH, and Tyerman SD
- Subjects
- Biological Transport, Cell Respiration, Plant Roots anatomy & histology, Crops, Agricultural physiology, Energy Metabolism, Salt Tolerance physiology
- Abstract
Agriculture is expanding into regions that are affected by salinity. This review considers the energetic costs of salinity tolerance in crop plants and provides a framework for a quantitative assessment of costs. Different sources of energy, and modifications of root system architecture that would maximize water vs ion uptake are addressed. Energy requirements for transport of salt (NaCl) to leaf vacuoles for osmotic adjustment could be small if there are no substantial leaks back across plasma membrane and tonoplast in root and leaf. The coupling ratio of the H
+ -ATPase also is a critical component. One proposed leak, that of Na+ influx across the plasma membrane through certain aquaporin channels, might be coupled to water flow, thus conserving energy. For the tonoplast, control of two types of cation channels is required for energy efficiency. Transporters controlling the Na+ and Cl- concentrations in mitochondria and chloroplasts are largely unknown and could be a major energy cost. The complexity of the system will require a sophisticated modelling approach to identify critical transporters, apoplastic barriers and root structures. This modelling approach will inform experimentation and allow a quantitative assessment of the energy costs of NaCl tolerance to guide breeding and engineering of molecular components., (© 2019 The Authors. New Phytologist © 2019 New Phytologist Trust.)- Published
- 2020
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40. Wheat mitochondrial respiration shifts from the tricarboxylic acid cycle to the GABA shunt under salt stress.
- Author
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Che-Othman MH, Jacoby RP, Millar AH, and Taylor NL
- Subjects
- Biological Transport drug effects, Cell Respiration drug effects, Metabolome drug effects, Mitochondria drug effects, Models, Biological, Photosynthesis drug effects, Plant Proteins metabolism, Sodium metabolism, Sodium Chloride pharmacology, Triticum growth & development, Citric Acid Cycle drug effects, Mitochondria physiology, Salt Stress physiology, Triticum physiology, gamma-Aminobutyric Acid metabolism
- Abstract
Mitochondrial respiration and tricarboxylic acid (TCA) cycle activity are required during salt stress in plants to provide ATP and reductants for adaptive processes such as ion exclusion, compatible solute synthesis and reactive oxygen species (ROS) detoxification. However, there is a poor mechanistic understanding of how salinity affects mitochondrial metabolism, particularly respiratory substrate source. To determine the mechanism of respiratory changes under salt stress in wheat leaves, we conducted an integrated analysis of metabolite content, respiratory rate and targeted protein abundance measurements. Also, we investigated the direct effect of salt on mitochondrial enzyme activities. Salt-treated wheat leaves exhibit higher respiration rate and extensive metabolite changes. The activity of the TCA cycle enzymes pyruvate dehydrogenase complex and the 2-oxoglutarate dehydrogenase complex were shown to be directly salt-sensitive. Multiple lines of evidence showed that the γ-aminobutyric acid (GABA) shunt was activated under salt treatment. During salt exposure, key metabolic enzymes required for the cyclic operation of the TCA cycle are physiochemically inhibited by salt. This inhibition is overcome by increased GABA shunt activity, which provides an alternative carbon source for mitochondria that bypasses salt-sensitive enzymes, to facilitate the increased respiration of wheat leaves., (© 2019 The Authors. New Phytologist © 2019 New Phytologist Trust.)
- Published
- 2020
- Full Text
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41. Protein corona formation moderates the release kinetics of ion channel antagonists from transferrin-functionalized polymeric nanoparticles.
- Author
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Naidu PSR, Denham E, Bartlett CA, McGonigle T, Taylor NL, Norret M, Smith NM, Dunlop SA, Iyer KS, and Fitzgerald M
- Abstract
Transferrin (Tf)-functionalized p(HEMA- ran -GMA) nanoparticles were designed to incorporate and release a water-soluble combination of three ion channel antagonists, namely zonampanel monohydrate (YM872), oxidized adenosine triphosphate (oxATP) and lomerizine hydrochloride (LOM) identified as a promising therapy for secondary degeneration that follows neurotrauma. Coupled with a mean hydrodynamic size of 285 nm and near-neutral surface charge of -5.98 mV, the hydrophilic nature of the functionalized polymeric nanoparticles was pivotal in effectively encapsulating the highly water soluble YM872 and oxATP, as well as lipophilic LOM dissolved in water-based medium, by a back-filling method. Maximum loading efficiencies of 11.8 ± 1.05% (w/w), 13.9 ± 1.50% (w/w) and 22.7 ± 4.00% (w/w) LOM, YM872 and oxATP respectively were reported. To obtain an estimate of drug exposure in vivo , drug release kinetics assessment by HPLC was conducted in representative physiological milieu containing 55% (v/v) human serum at 37 °C. In comparison to serum-free conditions, it was demonstrated that the inevitable adsorption of serum proteins on the Tf-functionalized nanoparticle surface as a protein corona impeded the rate of release of LOM and YM872 at both pH 5 and 7.4 over a period of 1 hour. While the release of oxATP from the nanoparticles was detectable for up to 30 minutes under serum-free conditions at pH 7.4, the presence of serum proteins and a slightly acidic environment impaired the detection of the drug, possibly due to its molecular instability. Nevertheless, under representative physiological conditions, all three drugs were released in combination from Tf-functionalized p(HEMA- ran -GMA) nanoparticles and detected for up to 20 minutes. Taken together, the study provided enhanced insight into potential physiological outcomes in the presence of serum proteins, and suggests that p(HEMA- ran -GMA)-based therapeutic nanoparticles may be promising drug delivery vehicles for CNS therapy., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2020
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42. Self-reported factors that influence rear seat belt use among adults.
- Author
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Taylor NL and Daily M
- Subjects
- Adult, Age Factors, Aged, Female, Humans, Male, Middle Aged, Seat Belts legislation & jurisprudence, Self Report, Sex Factors, United States, Young Adult, Peer Influence, Seat Belts statistics & numerical data
- Abstract
Introduction: While seat belt use among front seat occupants has significantly increased overtime a substantial usage gap still exists between front and back seat occupants. This study aims to identify factors that predict rear seat belt use among adult back seat passengers., Methods: We examined data from the 2016 Motor Vehicle Occupant Safety Survey, conducted by the National Highway Traffic Safety Administration, to determine the influence of front seat belt use, support of and belief of rear seat belt use laws, peer perception of seat belt use, nighttime belt use, and demographic factors on self-reported rear seat belt use. Rao-Scott chi-squared tests were used to determine significant associations between self-reported rear belt use and each predictor. Multivariate logistic regression was used to calculate adjusted odds ratios and determine the influence of significant predictors on rear seat belt use. Sampling weights were applied to produce nationally representative estimates; all statistical significance tests accounted for the complex survey design., Results: Among adults who reported riding in the back seat, 63% reported always using a rear seat belt. Front seat belt use, support and belief of state seat belt laws, nighttime seat belt use, age, and education were significantly associated with rear seat belt use. Multivariate regression results showed that adults who supported rear seat belt laws, reported front seat belt use and believed their state has a rear seat belt law were significantly more likely to report full-time use in the back seat., Conclusions: Seat belt laws and front seat belt use had the strongest association with reporting full-time use in the back seat. Practical Applications: Increasing familiarity with existing laws directed towards rear seat belt use as well as increasing awareness about the benefits of seat belts in all seating positions may help improve rear seat belt use., (Copyright © 2019 Elsevier Ltd and National Safety Council. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
43. Elucidating the Inability of Functionalized Nanoparticles to Cross the Blood-Brain Barrier and Target Specific Cells in Vivo.
- Author
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Naidu PSR, Gavriel N, Gray CGG, Bartlett CA, Toomey LM, Kretzmann JA, Patalwala D, McGonigle T, Denham E, Hee C, Ho D, Taylor NL, Norret M, Smith NM, Dunlop SA, Iyer KS, and Fitzgerald M
- Subjects
- Animals, Biological Transport physiology, Epoxy Compounds chemistry, Female, Male, Methacrylates chemistry, Microscopy, Confocal, Oligodendrocyte Precursor Cells metabolism, Polymers chemistry, Rats, Blood-Brain Barrier metabolism, Nanoparticles chemistry, Nanoparticles metabolism
- Abstract
The adsorption of serum proteins on the surface of nanoparticles (NPs) delivered into a biological environment has been known to alter NP surface properties and consequently their targeting efficiency. In this paper, we use random copolymer (p(HEMA- ran-GMA))-based NPs synthesized using 2-hydroxyethyl methacrylate (HEMA) and glycidyl methacrylate (GMA). We show that serum proteins bind to the NP and that functionalization with antibodies and peptides designed to facilitate NP passage across the blood-brain barrier (BBB) to bind specific cell types is ineffective. In particular, we use systematic in vitro and in vivo analyses to demonstrate that p(HEMA- ran-GMA) NPs functionalized with HIV-1 trans-activating transcriptor peptide (known to cross the BBB) and α neural/glial antigen 2 (NG2) (known for targeting oligodendrocyte precursor cells (OPCs)), individually and in combination, do not specifically target OPCs and are unable to cross the BBB, likely due to the serum protein binding to the NPs.
- Published
- 2019
- Full Text
- View/download PDF
44. An Ancient Peptide Family Buried within Vicilin Precursors.
- Author
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Zhang J, Payne CD, Pouvreau B, Schaefer H, Fisher MF, Taylor NL, Berkowitz O, Whelan J, Rosengren KJ, and Mylne JS
- Subjects
- Amino Acid Sequence, Proteolysis, Sequence Homology, Amino Acid, Tandem Mass Spectrometry, Seed Storage Proteins chemistry
- Abstract
New proteins can evolve by duplication and divergence or de novo, from previously noncoding DNA. A recently observed mechanism is for peptides to evolve within a "host" protein and emerge by proteolytic processing. The first examples of such interstitial peptides were ones hosted by precursors for seed storage albumin. Interstitial peptides have also been observed in precursors for seed vicilins, but current evidence for vicilin-buried peptides (VBPs) is limited to seeds of the broadleaf plants pumpkin and macadamia. Here, an extensive sequence analysis of vicilin precursors suggested that peptides buried within the N-terminal region of preprovicilins are widespread and truly ancient. Gene sequences indicative of interstitial peptides were found in species from Amborellales to eudicots and include important grass and legume crop species. We show the first protein evidence for a monocot VBP in date palm seeds as well as protein evidence from other crops including the common tomato, sesame and pumpkin relatives, cucumber, and the sponge loofah ( Luffa aegyptiaca). Their excision was consistent with asparaginyl endopeptidase-mediated maturation, and sequences were confirmed by tandem mass spectrometry. Our findings suggest that the family is large and ancient and that based on the NMR solution structures for loofah Luffin P1 and tomato VBP-8, VBPs adopt a helical hairpin fold stapled by two internal disulfide bonds. The first VBPs characterized were a protease inhibitor, antimicrobials, and a ribosome inactivator. The age and evolutionary retention of this peptide family suggest its members play important roles in plant biology.
- Published
- 2019
- Full Text
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45. Cold sensitivity of mitochondrial ATP synthase restricts oxidative phosphorylation in Arabidopsis thaliana.
- Author
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Kerbler SM, Taylor NL, and Millar AH
- Subjects
- Cold Temperature, Mitochondrial Proteins metabolism, Oxidative Phosphorylation, Oxidoreductases metabolism, Plant Leaves physiology, Plant Proteins metabolism, Arabidopsis physiology, Arabidopsis Proteins metabolism, Mitochondrial Proton-Translocating ATPases metabolism
- Abstract
The combined action of the electron transport chain (ETC) and ATP synthase is essential in determining energy efficiency in plants, and so is important for cellular biosynthesis, growth and development. Owing to the sessile nature of plants, mitochondria must operate over a wide temperature range in the environment, necessitating a broad temperature tolerance of their biochemical reactions. We investigated the temperature response of mitochondrial respiratory processes in isolated mitochondria and intact plants of Arabidopsis thaliana and considered the effect of instantaneous responses to temperature and acclimation responses to low temperatures. We show that at 4°C the plant mitochondrial ATP synthase is differentially inhibited compared with other elements of the respiratory pathway, leading to decreased ADP : oxygen ratios and a limitation to the rate of ATP synthesis. This effect persists in vivo and cannot be overcome by cold-temperature acclimation of plants. This mechanism adds a new element to the respiratory acclimation model and provides a direct means of temperature perception by plant mitochondria. This also provides an alternative explanation for non-phosphorylating ETC bypass mechanisms, like the alternative oxidase to maintain respiratory rates, albeit at lower ATP synthesis efficiency, in response to the sensitivity of ATP synthase to the prevailing temperature., (© 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.)
- Published
- 2019
- Full Text
- View/download PDF
46. Energy costs of salinity tolerance in crop plants.
- Author
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Tyerman SD, Munns R, Fricke W, Arsova B, Barkla BJ, Bose J, Bramley H, Byrt C, Chen Z, Colmer TD, Cuin T, Day DA, Foster KJ, Gilliham M, Henderson SW, Horie T, Jenkins CLD, Kaiser BN, Katsuhara M, Plett D, Miklavcic SJ, Roy SJ, Rubio F, Shabala S, Shelden M, Soole K, Taylor NL, Tester M, Watt M, Wege S, Wegner LH, and Wen Z
- Subjects
- Crops, Agricultural physiology, Energy Metabolism, Salt Tolerance
- Published
- 2019
- Full Text
- View/download PDF
47. Editorial for Special Issue "Plant Mitochondria".
- Author
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Taylor NL
- Subjects
- DNA, Mitochondrial genetics, Mitochondrial Proteins metabolism, Oxidative Phosphorylation, Plant Infertility, Stress, Physiological, Mitochondria metabolism, Plants metabolism
- Abstract
The primary function of mitochondria is respiration, where catabolism of substrates is coupled to adenosine triphosphate (ATP) synthesis via oxidative phosphorylation (OxPhos). [...].
- Published
- 2018
- Full Text
- View/download PDF
48. A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch.
- Author
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Fisher MF, Zhang J, Taylor NL, Howard MJ, Berkowitz O, Debowski AW, Behsaz B, Whelan J, Pevzner PA, and Mylne JS
- Abstract
Orbitides are cyclic ribosomally-synthesized and post-translationally modified peptides (RiPPs) from plants; they consist of standard amino acids arranged in an unbroken chain of peptide bonds. These cyclic peptides are stable and range in size and topologies making them potential scaffolds for peptide drugs; some display valuable biological activities. Recently two orbitides whose sequences were buried in those of seed storage albumin precursors were said to represent the first observable step in the evolution of larger and hydrophilic bicyclic peptides. Here, guided by transcriptome data, we investigated peptide extracts of 40 species specifically for the more hydrophobic orbitides and confirmed 44 peptides by tandem mass spectrometry, as well as obtaining solution structures for four of them by NMR. Acquiring transcriptomes from the phylogenetically important Corymboideae family confirmed the precursor genes for the peptides (called PawS1-Like or PawL1 ) are confined to the Asteroideae, a subfamily of the huge plant family Asteraceae. To be confined to the Asteroideae indicates these peptides arose during the Eocene epoch around 45 Mya. Unlike other orbitides, all PawL-derived Peptides contain an Asp residue, needed for processing by asparaginyl endopeptidase. This study has revealed what is likely to be a very large new family of orbitides, uniquely buried alongside albumin and processed by asparaginyl endopeptidase.
- Published
- 2018
- Full Text
- View/download PDF
49. We Are Not Alone: The iMOP Initiative and Its Roles in a Biology- and Disease-Driven Human Proteome Project.
- Author
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Tholey A, Taylor NL, Heazlewood JL, and Bendixen E
- Subjects
- Animals, Humans, Microbiota, Models, Animal, Research, Proteome analysis, Proteomics methods
- Abstract
Mapping of the human proteome has advanced significantly in recent years and will provide a knowledge base to accelerate our understanding of how proteins and protein networks can affect human health and disease. However, providing solutions to human health challenges will likely fail if insights are exclusively based on studies of human samples and human proteomes. In recent years, it has become evident that human health depends on an integrated understanding of the many species that make human life possible. These include the commensal microorganisms that are essential to human life, pathogens, and food species as well as the classic model organisms that enable studies of biological mechanisms. The Human Proteome Organization (HUPO) initiative on multiorganism proteomes (iMOP) works to support proteome research undertaken on nonhuman species that remain widely under-studied compared with the progress in human proteome research. This perspective argues the need for further research on multiple species that impact human life. We also present an update on recent progress in model organisms, microbiota, and food species, address the emerging problem of antibiotics resistance, and outline how iMOP activities could lead to a more inclusive approach for the human proteome project (HPP) to better support proteome research aimed at improving human health and furthering knowledge on human biology.
- Published
- 2017
- Full Text
- View/download PDF
50. Connecting salt stress signalling pathways with salinity-induced changes in mitochondrial metabolic processes in C3 plants.
- Author
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Che-Othman MH, Millar AH, and Taylor NL
- Subjects
- Photosynthesis physiology, Plant Transpiration physiology, Salinity, Mitochondria metabolism, Oxygen metabolism, Plants metabolism, Signal Transduction, Stress, Physiological
- Abstract
Salinity exerts a severe detrimental effect on crop yields globally. Growth of plants in saline soils results in physiological stress, which disrupts the essential biochemical processes of respiration, photosynthesis, and transpiration. Understanding the molecular responses of plants exposed to salinity stress can inform future strategies to reduce agricultural losses due to salinity; however, it is imperative that signalling and functional response processes are connected to tailor these strategies. Previous research has revealed the important role that plant mitochondria play in the salinity response of plants. Review of this literature shows that 2 biochemical processes required for respiratory function are affected under salinity stress: the tricarboxylic acid cycle and the transport of metabolites across the inner mitochondrial membrane. However, the mechanisms by which components of these processes are affected or react to salinity stress are still far from understood. Here, we examine recent findings on the signal transduction pathways that lead to adaptive responses of plants to salinity and discuss how they can be involved in and be affected by modulation of the machinery of energy metabolism with attention to the role of the tricarboxylic acid cycle enzymes and mitochondrial membrane transporters in this process., (© 2017 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd.)
- Published
- 2017
- Full Text
- View/download PDF
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