32 results on '"Tatu Rojalin"'
Search Results
2. Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches
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Joshua A. Welsh, Deborah C. I. Goberdhan, Lorraine O'Driscoll, Edit I. Buzas, Cherie Blenkiron, Benedetta Bussolati, Houjian Cai, Dolores Di Vizio, Tom A. P. Driedonks, Uta Erdbrügger, Juan M. Falcon‐Perez, Qing‐Ling Fu, Andrew F. Hill, Metka Lenassi, Sai Kiang Lim, Mỹ G. Mahoney, Sujata Mohanty, Andreas Möller, Rienk Nieuwland, Takahiro Ochiya, Susmita Sahoo, Ana C. Torrecilhas, Lei Zheng, Andries Zijlstra, Sarah Abuelreich, Reem Bagabas, Paolo Bergese, Esther M. Bridges, Marco Brucale, Dylan Burger, Randy P. Carney, Emanuele Cocucci, Rossella Crescitelli, Edveena Hanser, Adrian L. Harris, Norman J. Haughey, An Hendrix, Alexander R. Ivanov, Tijana Jovanovic‐Talisman, Nicole A. Kruh‐Garcia, Vroniqa Ku'ulei‐Lyn Faustino, Diego Kyburz, Cecilia Lässer, Kathleen M. Lennon, Jan Lötvall, Adam L. Maddox, Elena S. Martens‐Uzunova, Rachel R. Mizenko, Lauren A. Newman, Andrea Ridolfi, Eva Rohde, Tatu Rojalin, Andrew Rowland, Andras Saftics, Ursula S. Sandau, Julie A. Saugstad, Faezeh Shekari, Simon Swift, Dmitry Ter‐Ovanesyan, Juan P. Tosar, Zivile Useckaite, Francesco Valle, Zoltan Varga, Edwin van derPol, Martijn J. C. vanHerwijnen, Marca H. M. Wauben, Ann M. Wehman, Sarah Williams, Andrea Zendrini, Alan J. Zimmerman, MISEV Consortium, Clotilde Théry, and Kenneth W. Witwer
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ectosomes ,exosomes ,extracellular vesicles ,extracellular particles ,guidelines ,microparticles ,Cytology ,QH573-671 - Abstract
Abstract Extracellular vesicles (EVs), through their complex cargo, can reflect the state of their cell of origin and change the functions and phenotypes of other cells. These features indicate strong biomarker and therapeutic potential and have generated broad interest, as evidenced by the steady year‐on‐year increase in the numbers of scientific publications about EVs. Important advances have been made in EV metrology and in understanding and applying EV biology. However, hurdles remain to realising the potential of EVs in domains ranging from basic biology to clinical applications due to challenges in EV nomenclature, separation from non‐vesicular extracellular particles, characterisation and functional studies. To address the challenges and opportunities in this rapidly evolving field, the International Society for Extracellular Vesicles (ISEV) updates its ‘Minimal Information for Studies of Extracellular Vesicles’, which was first published in 2014 and then in 2018 as MISEV2014 and MISEV2018, respectively. The goal of the current document, MISEV2023, is to provide researchers with an updated snapshot of available approaches and their advantages and limitations for production, separation and characterisation of EVs from multiple sources, including cell culture, body fluids and solid tissues. In addition to presenting the latest state of the art in basic principles of EV research, this document also covers advanced techniques and approaches that are currently expanding the boundaries of the field. MISEV2023 also includes new sections on EV release and uptake and a brief discussion of in vivo approaches to study EVs. Compiling feedback from ISEV expert task forces and more than 1000 researchers, this document conveys the current state of EV research to facilitate robust scientific discoveries and move the field forward even more rapidly.
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- 2024
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3. Tetraspanins are unevenly distributed across single extracellular vesicles and bias sensitivity to multiplexed cancer biomarkers
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Rachel R. Mizenko, Terza Brostoff, Tatu Rojalin, Hanna J. Koster, Hila S. Swindell, Gary S. Leiserowitz, Aijun Wang, and Randy P. Carney
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Exosomes ,Single-particle characterization ,ExoView ,Ovarian cancer ,Placental mesenchymal stem cells ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Abstract Background Tetraspanin expression of extracellular vesicles (EVs) is often used as a surrogate for their detection and classification, a practice that typically assumes their consistent expression across EV sources. Results Here we demonstrate that there are distinct patterns in colocalization of tetraspanin expression of EVs enriched from a variety of in vitro and in vivo sources. We report an optimized method for the use of single particle antibody-capture and fluorescence detection to identify subpopulations according to tetraspanin expression and compare our findings with nanoscale flow cytometry. We found that tetraspanin profile is consistent from a given EV source regardless of isolation method, but that tetraspanin profiles are distinct across various sources. Tetraspanin profiles measured by flow cytometry do not totally agree, suggesting that limitations in subpopulation detection significantly impact apparent protein expression. We further analyzed tetraspanin expression of single EVs captured non-specifically, revealing that tetraspanin capture can bias the apparent multiplexed tetraspanin profile. Finally, we demonstrate that this bias can have significant impact on diagnostic sensitivity for tumor-associated EV surface markers. Conclusion Our findings may reveal key insights into protein expression heterogeneity of EVs that better inform EV capture and detection platforms for diagnostic or other downstream use. Graphical abstract
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- 2021
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4. Novel Stilbene-Nitroxyl Hybrid Compounds Display Discrete Modulation of Amyloid Beta Toxicity and Structure
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Silvia Hilt, Ruiwu Liu, Izumi Maezawa, Tatu Rojalin, Hnin H. Aung, Madhu Budamagunta, Ryan Slez, Qizhi Gong, Randy P. Carney, and John C. Voss
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protein misfolding ,protein aggregation ,oxidative stress ,EPR (electron paramagnetic resonance) ,circular dichroism (CD) ,amyloid beta peptide (Aβ) ,Chemistry ,QD1-999 - Abstract
Several neurodegenerative diseases are driven by misfolded proteins that assemble into soluble aggregates. These “toxic oligomers” have been associated with a plethora of cellular dysfunction and dysregulation, however the structural features underlying their toxicity are poorly understood. A major impediment to answering this question relates to the heterogeneous nature of the oligomers, both in terms of structural disorder and oligomer size. This not only complicates elucidating the molecular etiology of these disorders, but also the druggability of these targets as well. We have synthesized a class of bifunctional stilbenes to modulate both the conformational toxicity within amyloid beta oligomers (AβO) and the oxidative stress elicited by AβO. Using a neuronal culture model, we demonstrate this bifunctional approach has the potential to counter the molecular pathogenesis of Alzheimer’s disease in a powerful, synergistic manner. Examination of AβO structure by various biophysical tools shows that each stilbene candidate uniquely alters AβO conformation and toxicity, providing insight towards the future development of structural correctors for AβO. Correlations of AβO structural modulation and bioactivity displayed by each provides insights for future testing in vivo. The multi-target activity of these hybrid molecules represents a highly advantageous feature for disease modification in Alzheimer’s, which displays a complex, multifactorial etiology. Importantly, these novel small molecules intervene with intraneuronal AβO, a necessary feature to counter the cycle of dysregulation, oxidative stress and inflammation triggered during the earliest stages of disease progression.
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- 2022
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5. Nanoplasmonic Approaches for Sensitive Detection and Molecular Characterization of Extracellular Vesicles
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Tatu Rojalin, Brian Phong, Hanna J. Koster, and Randy P. Carney
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exosomes ,diagnostics ,SERS ,SPR ,nanopillars ,nanoarrays ,Chemistry ,QD1-999 - Abstract
All cells release a multitude of nanoscale extracellular vesicles (nEVs) into circulation, offering immense potential for new diagnostic strategies. Yet, clinical translation for nEVs remains a challenge due to their vast heterogeneity, our insufficient ability to isolate subpopulations, and the low frequency of disease-associated nEVs in biofluids. The growing field of nanoplasmonics is poised to address many of these challenges. Innovative materials engineering approaches based on exploiting nanoplasmonic phenomena, i.e., the unique interaction of light with nanoscale metallic materials, can achieve unrivaled sensitivity, offering real-time analysis and new modes of medical and biological imaging. We begin with an introduction into the basic structure and function of nEVs before critically reviewing recent studies utilizing nanoplasmonic platforms to detect and characterize nEVs. For the major techniques considered, surface plasmon resonance (SPR), localized SPR, and surface enhanced Raman spectroscopy (SERS), we introduce and summarize the background theory before reviewing the studies applied to nEVs. Along the way, we consider notable aspects, limitations, and considerations needed to apply plasmonic technologies to nEV detection and analysis.
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- 2019
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6. Single exosome study reveals subpopulations distributed among cell lines with variability related to membrane content
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Zachary J. Smith, Changwon Lee, Tatu Rojalin, Randy P. Carney, Sidhartha Hazari, Alisha Knudson, Kit Lam, Heikki Saari, Elisa Lazaro Ibañez, Tapani Viitala, Timo Laaksonen, Marjo Yliperttula, and Sebastian Wachsmann-Hogiu
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exosomes ,microvesicles ,single particle ,Raman ,laser trap ,membrane content ,Cytology ,QH573-671 - Abstract
Current analysis of exosomes focuses primarily on bulk analysis, where exosome-to-exosome variability cannot be assessed. In this study, we used Raman spectroscopy to study the chemical composition of single exosomes. We measured spectra of individual exosomes from 8 cell lines. Cell-line-averaged spectra varied considerably, reflecting the variation in total exosomal protein, lipid, genetic, and cytosolic content. Unexpectedly, single exosomes isolated from the same cell type also exhibited high spectral variability. Subsequent spectral analysis revealed clustering of single exosomes into 4 distinct groups that were not cell-line specific. Each group contained exosomes from multiple cell lines, and most cell lines had exosomes in multiple groups. The differences between these groups are related to chemical differences primarily due to differing membrane composition. Through a principal components analysis, we identified that the major sources of spectral variation among the exosomes were in cholesterol content, relative expression of phospholipids to cholesterol, and surface protein expression. For example, exosomes derived from cancerous versus non-cancerous cell lines can be largely separated based on their relative expression of cholesterol and phospholipids. We are the first to indicate that exosome subpopulations are shared among cell types, suggesting distributed exosome functionality. The origins of these differences are likely related to the specific role of extracellular vesicle subpopulations in both normal cell function and carcinogenesis, and they may provide diagnostic potential at the single exosome level.
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- 2015
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7. Raman and SERS spectroscopy for EV characterization: detection of amyloid beta and bulk chemical analysis (Conference Presentation)
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Meruyert Imanbekova, Tatu Rojalin, Silvia Hilt, Randy P. Carney, John C. Voss, Ayse Mine Saridag, Mehmet Kahraman, and Humeyra Caglayan
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- 2023
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8. Homogenous high enhancement surface-enhanced Raman scattering (SERS) substrates by simple hierarchical tuning of gold nanofoams
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Hanna J. Koster, Hannah J. O'Toole, Kwan Lun Chiu, Tatu Rojalin, and Randy P. Carney
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Colloid and Surface Chemistry ,Lithography ,Raman spectroscopy ,Materials Chemistry ,Plasmonics ,Physical and Theoretical Chemistry ,Biosensor ,Surfaces, Coatings and Films ,Biotechnology ,Nanomaterials - Abstract
Surface enhanced Raman scattering (SERS) is a powerful tool for vibrational spectroscopy, providing orders of magnitude increase in chemical sensitivity compared to spontaneous Raman scattering. Yet it remains a challenge to synthesize robust, uniform SERS substrates quickly and easily. Lithographic approaches to produce substrates can achieve high, uniform sensitivity but are expensive and complex, thus difficult to scale. Facile solution-phase chemical approaches often result in unreliable SERS substrates due to heterogeneous arrangement of "hot spots" throughout the material. Here we demonstrate the synthesis and characterization of a homogeneous gold nanofoam (AuNF) substrate produced by a rapid, one-pot, four-ingredient synthetic approach. AuNFs are rapidly nucleated with macroscale porosity and then chemically roughened to produce nanoscale features that confer homogeneous and high signal enhancement (~109) across large areas, a comparable performance to lithographically produced substrates.
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- 2022
9. Programmable Bispecific Nano-immunoengager That Captures T Cells and Reprograms Tumor Microenvironment
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Lu Zhang, Ruonan Bo, Yi Wu, Longmeng Li, Zheng Zhu, Ai-Hong Ma, Wenwu Xiao, Yanyu Huang, Tatu Rojalin, Xingbin Yin, Chunping Mao, Fengyi Wang, Yongheng Wang, Hongyong Zhang, Kelmen E. Low, Kiana Lee, Yousif Ajena, Di Jing, Dalin Zhang, Christopher M. Baehr, Ruiwu Liu, Lei Wang, Yuanpei Li, and Kit S. Lam
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Integrins ,Mechanical Engineering ,T-Lymphocytes ,nano-immuno-engager ,Bioengineering ,General Chemistry ,Condensed Matter Physics ,Immunomodulation ,fibrillar transformation ,Mice ,Neoplasms ,T cells capture ,Tumor Microenvironment ,immune checkpoint blockade (ICB) therapy ,Animals ,Nanotechnology ,General Materials Science ,Nanoscience & Nanotechnology ,Cancer - Abstract
Immune checkpoint blockade (ICB) therapy has revolutionized clinical oncology. However, the efficacy of ICB therapy is limited by the ineffective infiltration of T effector (Teff) cells to tumors and the immunosuppressive tumor microenvironment (TME). Here, we report a programmable tumor cells/Teff cells bispecific nano-immunoengager (NIE) that can circumvent these limitations to improve ICB therapy. The peptidic nanoparticles (NIE-NPs) bind tumor cell surface α3β1 integrin and undergo in situ transformation into nanofibrillar network nanofibers (NIE-NFs). The prolonged retained nanofibrillar network at the TME captures Teff cells via the activatable α4β1 integrin ligand and allows sustained release of resiquimod for immunomodulation. This bispecific NIE eliminates syngeneic 4T1 breast cancer and Lewis lung cancer models in mice, when given together with anti-PD-1 antibody. The in vivo structural transformation-based supramolecular bispecific NIE represents an innovative class of programmable receptor-mediated targeted immunotherapeutics to greatly enhance ICB therapy against cancers.
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- 2022
10. Surface enhanced Raman scattering of extracellular vesicles for cancer diagnostics despite isolation dependent lipoprotein contamination
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Randy P. Carney, Andrew C. Birkeland, Tatu Rojalin, Alyssa Powell, Rachel R. Mizenko, Dina Pham, and Hanna J. Koster
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Chemistry ,Lipoproteins ,Size-exclusion chromatography ,Contamination ,Spectrum Analysis, Raman ,Isolation (microbiology) ,Extracellular vesicles ,Extracellular Vesicles ,symbols.namesake ,Neoplasms ,Chromatography, Gel ,symbols ,Biophysics ,Humans ,General Materials Science ,Density gradient ultracentrifugation ,Ultracentrifuge ,Ultracentrifugation ,Raman scattering ,Lipoprotein - Abstract
Given the emerging diagnostic utility of extracellular vesicles (EVs), it is important to account for non-EV contaminants. Lipoprotein present in EV-enriched isolates may inflate particle counts and decrease sensitivity to biomarkers of interest, skewing chemical analyses and perpetuating downstream issues in labeling or functional analysis. Using label free surface enhanced Raman scattering (SERS), we confirm that three common EV isolation methods (differential ultracentrifugation, density gradient ultracentrifugation, and size exclusion chromatography) yield variable lipoprotein content. We demonstrate that a dual-isolation method is necessary to isolate EVs from the major classes of lipoprotein. However, combining SERS analysis with machine learning assisted classification, we show that the disease state is the main driver of distinction between EV samples, and largely unaffected by choice of isolation. Ultimately, this study describes a convenient SERS assay to retain accurate diagnostic information from clinical samples by overcoming differences in lipoprotein contamination according to isolation method., SERS can “see through” varying lipoprotein contamination present in extracellular vesicles isolated from cancer patient samples for accurate diagnostic classification.
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- 2021
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11. Hybrid Nanoplasmonic Porous Biomaterial Scaffold for Liquid Biopsy Diagnostics Using Extracellular Vesicles
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Di Tran, Tatu Rojalin, Juanjuan Liu, Hanna J. Koster, Sebastian Wachsmann-Hogiu, Randy P. Carney, and Rachel R. Mizenko
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Scaffold ,Silver ,Biomedical Engineering ,Metal Nanoparticles ,Biocompatible Materials ,Bioengineering ,Nanotechnology ,exosomes ,02 engineering and technology ,01 natural sciences ,Extracellular vesicles ,Silver nanoparticle ,Analytical Chemistry ,Nanomaterials ,biopbotonies ,Extracellular Vesicles ,Rare Diseases ,In vivo ,cancer ,Liquid biopsy ,Instrumentation ,nanomaterials ,Fluid Flow and Transfer Processes ,screening and diagnosis ,liquid biopsy ,SERS ,Chemistry ,Prevention ,Process Chemistry and Technology ,010401 analytical chemistry ,biophotonics ,Liquid Biopsy ,Substrate (chemistry) ,021001 nanoscience & nanotechnology ,Microvesicles ,4.1 Discovery and preclinical testing of markers and technologies ,0104 chemical sciences ,Detection ,Raman spectroscopy ,0210 nano-technology ,Porosity ,Biotechnology - Abstract
[Image: see text] For more effective early-stage cancer diagnostics, there is a need to develop sensitive and specific, non- or minimally invasive, and cost-effective methods for identifying circulating nanoscale extracellular vesicles (EVs). Here, we report the utilization of a simple plasmonic scaffold composed of a microscale biosilicate substrate embedded with silver nanoparticles for surface-enhanced Raman scattering (SERS) analysis of ovarian and endometrial cancer EVs. These substrates are rapidly and inexpensively produced without any complex equipment or lithography. We extensively characterize the substrates with electron microscopy and outline a reproducible methodology for their use in analyzing EVs from in vitro and in vivo biofluids. We report effective chemical treatments for (i) decoration of metal surfaces with cysteamine to nonspecifically pull down EVs to SERS hotspots and (ii) enzymatic cleavage of extraluminal moieties at the surface of EVs that prevent localization of complementary chemical features (lipids/proteins) to the vicinity of the metal-enhanced fields. We observe a major loss of sensitivity for ovarian and endometrial cancer following enzymatic cleavage of EVs’ extraluminal domain, suggesting its critical significance for diagnostic platforms. We demonstrate that the SERS technique represents an ideal tool to assess and measure the high heterogeneity of EVs isolated from clinical samples in an inexpensive, rapid, and label-free assay.
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- 2020
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12. A programmable bispecific nano-immuno-engager promotes T cell homing and reprograms tumour microenvironment
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Kiana Lee, Lei Wang, Yousif Ajena, Dalin Zhang, Zheng Zhu, Ruiwu Liu, Ai-Hong Ma, Hongyong Zhang, Yuanpei Li, Kit S. Lam, Yanyu Huang, Ruonan Bo, Tatu Rojalin, Kelmen Low, Xingbin Yin, Yi Wu, Di Jing, Yongheng Wang, Chris Baehr, Wenwu Xiao, Longmeng Li, and Lu Zhang
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medicine.anatomical_structure ,Chemistry ,T cell ,medicine ,Cell biology ,Homing (hematopoietic) - Abstract
Immune checkpoint blockade (ICB) therapy has revolutionized clinical oncology. However, the efficacy of ICB therapy is limited by the ineffective homing of T effector (Teff) cells to tumours and the immunosuppressive tumour microenvironment (TME). Here, we report a programmable tumour cells/Teff cells bispecific nano-immuno-engager (NIE) that can circumvent these limitations to improve ICB therapy. We have developed 28 nm non-toxic peptidic micellar nanoparticles (NIE-NPs) that bind α3β1 integrin on tumour cells membrane and undergo in situ transformation on surface of tumour cells into nanofibrillar network (NIE-NFs). The nanofibrillar network persistently facilitates cytotoxic T cells’ homing to the proximity of tumour cells via activatable α4β1 integrin ligands, and also allows sustained release of resiquimod to reprogram the TME. This bispecific NIE eliminates syngeneic 4T1 breast cancer and Lewis lung cancer models in mice, when given together with anti-PD-1 antibody. The in vivo structural transformation-based supramolecular bispecific NIE represents an innovative class of programmable receptor-mediated targeted immunotherapeutics to greatly enhance ICB therapy against cancers.
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- 2021
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13. Superhydrophobic bowl-like SERS substrates patterned from CMOS sensors for extracellular vesicle characterization
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Meruyert Imanbekova, Juanjuan Liu, Tatu Rojalin, Sorina Suarasan, Sebastian Wachsmann-Hogiu, Silvia Hilt, and John C. Voss
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Silver ,Materials science ,Scanning electron microscope ,Biomedical Engineering ,Metal Nanoparticles ,Nanotechnology ,02 engineering and technology ,Spectrum Analysis, Raman ,010402 general chemistry ,01 natural sciences ,Silver nanoparticle ,Extracellular Vesicles ,chemistry.chemical_compound ,Cell Line, Tumor ,Nano ,Humans ,General Materials Science ,Dimethylpolysiloxanes ,Sulfhydryl Compounds ,Microlens ,Aniline Compounds ,technology, industry, and agriculture ,Optical Devices ,Substrate (chemistry) ,General Chemistry ,General Medicine ,Extracellular vesicle ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,chemistry ,Polystyrenes ,Polystyrene ,0210 nano-technology ,Hydrophobic and Hydrophilic Interactions ,Layer (electronics) - Abstract
Using a regular CMOS sensor as a template, we are able to fabricate a simple but highly effective superhydrophobic SERS substrate. Specifically, we decorated the microlens layer of the sensor with 7 μm polystyrene beads to obtain a PDMS patterned replica. The process resulted in a uniform pattern of voids in the PDMS (denoted nanobowls) that are intercalated with a few larger voids (denoted here microbowls). The voids act as superhydrophobic substrates with analyte concentration capabilities in bigger bowl-like structures. Silver nanoparticles were directly grown on the patterned PDMS substrate inside both the nano- and microbowls, and serve as strong electromagnetic field enhancers for the SERS substrate. After systematic characterization of the fabricated SERS substrate by atomic force microscopy and scanning electron microscopy, we demonstrated its SERS performance using 4-aminothiophenol as a reporter molecule. Finally, we employed this innovative substrate to concentrate and analyze extracellular vesicles (EVs) isolated from an MC65 neural cell line in an ultralow sample volume. This substrate can be further exploited for the investigation of various EV biomarkers for early diagnosis of different diseases using liquid biopsy.
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- 2020
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14. Machine Learning-Assisted Sampling of Surfance-Enhanced Raman Scattering (SERS) Substrates Improve Data Collection Efficiency
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Dexter D. Antonio, Tatu Rojalin, Ambarish Kulkarni, and Randy P. Carney
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surface-enhanced Raman scattering ,Computer science ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,computer.software_genre ,Spectrum Analysis, Raman ,01 natural sciences ,plasmonics ,Article ,Analytical Chemistry ,Machine Learning ,symbols.namesake ,Artificial Intelligence ,Raman ,Diagnostics ,Instrumentation ,Spectroscopy ,automation ,Data collection ,SERS ,business.industry ,Spectrum Analysis ,Mechanical Engineering ,Data Collection ,Sampling (statistics) ,Reproducibility of Results ,artificial intelligence ,021001 nanoscience & nanotechnology ,Automation ,0104 chemical sciences ,symbols ,Data mining ,0210 nano-technology ,business ,computer ,Raman scattering ,XGBoost ,Physical Chemistry (incl. Structural) - Abstract
Surface-enhanced Raman scattering (SERS) is a powerful technique for sensitive label-free analysis of chemical and biological samples. While much recent work has established sophisticated automation routines using machine learning and related artificial intelligence methods, these efforts have largely focused on downstream processing (e.g., classification tasks) of previously collected data. While fully automated analysis pipelines are desirable, current progress is limited by cumbersome and manually intensive sample preparation and data collection steps. Specifically, a typical lab-scale SERS experiment requires the user to evaluate the quality and reliability of the measurement (i.e., the spectra) as the data are being collected. This need for expert user-intuition is a major bottleneck that limits applicability of SERS-based diagnostics for point-of-care clinical applications, where trained spectroscopists are likely unavailable. While application-agnostic numerical approaches (e.g., signal-to-noise thresholding) are useful, there is an urgent need to develop algorithms that leverage expert user intuition and domain knowledge to simplify and accelerate data collection steps. To address this challenge, in this work, we introduce a machine learning-assisted method at the acquisition stage. We tested six common algorithms to measure best performance in the context of spectral quality judgment. For adoption into future automation platforms, we developed an open-source python package tailored for rapid expert user annotation to train machine learning algorithms. We expect that this new approach to use machine learning to assist in data acquisition can serve as a useful building block for point-of-care SERS diagnostic platforms.
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- 2021
15. Tetraspanins are unevenly distributed across single extracellular vesicles and bias sensitivity to multiplexed cancer biomarkers
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Gary S. Leiserowitz, Hila Shimshi Swindell, Tatu Rojalin, Rachel R. Mizenko, Terza Brostoff, Hanna J. Koster, Randy P. Carney, and Aijun Wang
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Technology ,Single-particle characterization ,Tetraspanins ,Biomedical Engineering ,Pharmaceutical Science ,Medicine (miscellaneous) ,Bioengineering ,Placental mesenchymal stem cells ,Exosomes ,Applied Microbiology and Biotechnology ,Extracellular vesicles ,Sensitivity and Specificity ,Protein expression ,Fluorescence ,Flow cytometry ,Cell Line ,Extracellular Vesicles ,Tetraspanin ,Clinical Research ,Ovarian cancer ,Cell Line, Tumor ,Medical technology ,medicine ,Biomarkers, Tumor ,Humans ,R855-855.5 ,Nanoscience & Nanotechnology ,Cancer ,Ovarian Neoplasms ,Tumor ,medicine.diagnostic_test ,Chemistry ,Prevention ,Research ,Colocalization ,Mesenchymal Stem Cells ,Flow Cytometry ,Microvesicles ,Cell biology ,ExoView ,embryonic structures ,Molecular Medicine ,Cancer biomarkers ,Female ,TP248.13-248.65 ,Biomarkers ,Biotechnology - Abstract
Background Tetraspanin expression of extracellular vesicles (EVs) is often used as a surrogate for their detection and classification, a practice that typically assumes their consistent expression across EV sources. Results Here we demonstrate that there are distinct patterns in colocalization of tetraspanin expression of EVs enriched from a variety of in vitro and in vivo sources. We report an optimized method for the use of single particle antibody-capture and fluorescence detection to identify subpopulations according to tetraspanin expression and compare our findings with nanoscale flow cytometry. We found that tetraspanin profile is consistent from a given EV source regardless of isolation method, but that tetraspanin profiles are distinct across various sources. Tetraspanin profiles measured by flow cytometry do not totally agree, suggesting that limitations in subpopulation detection significantly impact apparent protein expression. We further analyzed tetraspanin expression of single EVs captured non-specifically, revealing that tetraspanin capture can bias the apparent multiplexed tetraspanin profile. Finally, we demonstrate that this bias can have significant impact on diagnostic sensitivity for tumor-associated EV surface markers. Conclusion Our findings may reveal key insights into protein expression heterogeneity of EVs that better inform EV capture and detection platforms for diagnostic or other downstream use. Graphical abstract
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- 2021
16. Identification of amyloid beta in small extracellular vesicles
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Meruyert, Imanbekova, Sorina, Suarasan, Tatu, Rojalin, Rachel R, Mizenko, Silvia, Hilt, Meghna, Mathur, Paula, Lepine, Michael, Nicouleau, Nguyen-Vi, Mohamed, Thomas M, Durcan, Randy P, Carney, John C, Voss, and Sebastian, Wachsmann-Hogiu
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Chemistry ,viruses ,virus diseases ,respiratory system - Abstract
One of the hallmarks of Alzheimer's disease (AD) pathogenesis is believed to be the production and deposition of amyloid-beta (Aβ) peptide into extracellular plaques. Existing research indicates that extracellular vesicles (EVs) can carry Aβ associated with AD. However, characterization of the EVs-associated Aβ and its conformational variants has yet to be realized. Raman spectroscopy is a label-free and non-destructive method that is able to assess the biochemical composition of EVs. This study reports for the first time the Raman spectroscopic fingerprint of the Aβ present in the molecular cargo of small extracellular vesicles (sEVs). Raman spectra were measured from sEVs isolated from Alzheimer's disease cell culture model, where secretion of Aβ is regulated by tetracycline promoter, and from midbrain organoids. The averaged spectra of each sEV group showed considerable variation as a reflection of the biochemical content of sEVs. Spectral analysis identified more intense Raman peaks at 1650 cm−1 and 2930 cm−1 attributable to the Aβ peptide incorporated in sEVs produced by the Alzheimer's cell culture model. Subsequent analysis of the spectra by principal component analysis differentiated the sEVs of the Alzheimer's disease cell culture model from the control groups of sEVs. Moreover, the results indicate that Aβ associated with secreted sEVs has a α-helical secondary structure and the size of a monomer or small oligomer. Furthermore, by analyzing the lipid content of sEVs we identified altered fatty acid chain lengths in sEVs that carry Aβ that may affect the fluidity of the EV membrane. Overall, our findings provide evidence supporting the use of Raman spectroscopy for the identification and characterization of sEVs associated with potential biomarkers of neurological disorders such as toxic proteins., Extracellular vesicles can carry Aβ associated with Alzheimer's disease. In this article we identify specific Raman spectroscopic features that can be associated with Aβ present in the molecular cargo of small extracellular vesicles.
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- 2021
17. Tetraspanin immunocapture phenotypes extracellular vesicles according to biofluid source but may limit identification of multiplexed cancer biomarkers
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Koster Hj, Swindell Hs, Gary S. Leiserowitz, Tatu Rojalin, Aijun Wang, Randy P. Carney, Brostoff T, and Mizenko Rr
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medicine.diagnostic_test ,Tetraspanin ,Chemistry ,embryonic structures ,medicine ,Colocalization ,Cancer biomarkers ,Signal transduction ,Immunofluorescence ,Phenotype ,Biogenesis ,Flow cytometry ,Cell biology - Abstract
Tetraspanin expression of extracellular vesicles (EVs) is often used as a surrogate for their general detection and classification from background contaminants. This common practice typically assumes a consistent expression of tetraspanins across EV sources, thus obscuring subpopulations of variable or limited tetraspanin expression. While some recent studies indicate differential expression of tetraspanins across bulk isolated EVs, here we present analysis of single EVs isolated using various field-standard methods from a variety of in vitro and in vivo sources to identify distinct patterns in colocalization of tetraspanin expression. We report an optimized method for the use of antibodycapture single particle interferometric reflectance imaging sensing (SP-IRIS) and fluorescence detection to identify subpopulations according to tetraspanin expression and compare our findings with nanoscale flow cytometry. Using SP-IRIS and immunofluorescence, we report that tetraspanin profile is consistent from a given EV source regardless of isolation method, but that tetraspanin profiles are distinct across various sources. Tetraspanin profiles as measured by flow cytometry do not share similar trends, suggesting that limitations in subpopulation detection significantly impact apparent protein expression. We further analyzed tetraspanin expression of single EVs captured non-specifically, revealing that tetraspanin capture can bias the apparent multiplexed tetraspanin profile. Finally, we demonstrate that this bias can have significant impact on diagnostic sensitivity for tumor-associated EV surface markers. Our findings may reveal key insights into the complexities of the EV biogenesis and signaling pathways and better inform EV capture and detection platforms for diagnostic or other downstream use.
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- 2021
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18. Tumor Receptor-Mediated In Vivo Modulation of the Morphology, Phototherapeutic Properties, and Pharmacokinetics of Smart Nanomaterials
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Christopher M. Baehr, Lu Zhang, Yousif Ajena, Xingbin Yin, Longmeng Li, Wenwu Xiao, Yuanpei Li, Yanyu Huang, Kit S. Lam, Lei Wang, Dalin Zhang, Zheng Zhu, Xingjian Yu, Tatu Rojalin, and Yi Wu
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Photosensitizing Agents ,Chemistry ,General Engineering ,General Physics and Astronomy ,Receptor-mediated endocytosis ,Living cell ,Photothermal therapy ,Nanomaterials ,Mice ,Pharmacokinetics ,Photochemotherapy ,In vivo ,Cell Line, Tumor ,Cancer research ,Animals ,Nanoparticles ,General Materials Science ,Photosensitizer ,Receptor - Abstract
To be clinically efficacious, nanotherapeutic drugs need to reach disease tissues reliably and cause limited side effects to normal organs and tissues. Here, we report a proof-of-concept study on the development of a smart peptidic nanophototherapeutic agent in line with clinical requirements, which can transform its morphology from nanoparticles to nanofibrils at the tumor sites. This in vivo receptor-mediated transformation process resulted in the formation and prolonged tumor-retention of highly ordered (J-aggregate type of photosensitizer) photosensitive peptide nanofibrillar network with greatly enhanced photothermal and photodynamic properties. This strategy of "multiple daily low-intensity laser radiation after each intravenous injection of significantly low-dose of nanomaterials" demonstrated effective elimination of 4T1 orthotopic syngeneic breast cancer in mice. The technology for nanomaterial modulation based on living cell surface receptors, in this case tumor-associated α3β1 integrin, has great potential for clinical translation and is expected to improve the therapeutic efficacy against many cancers.
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- 2020
19. Oligomerization Alters Binding Affinity between Amyloid Beta and a Modulator of Peptide Aggregation
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Artturi Koivuniemi, Alex Bunker, Tapani Viitala, Kálmán Hideg, Marjo Yliperttula, John C. Voss, Tatu Rojalin, Sebastian Wachsmann-Hogiu, Silvia Hilt, and Tamás Kálai
- Subjects
0301 basic medicine ,Technology ,Amyloid beta ,Dimer ,Peptide ,Neurodegenerative ,Physical Chemistry ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,Engineering ,0302 clinical medicine ,Mole ,Acquired Cognitive Impairment ,2.1 Biological and endogenous factors ,Aetiology ,Physical and Theoretical Chemistry ,Surface plasmon resonance ,Protein secondary structure ,chemistry.chemical_classification ,biology ,Small molecule ,Brain Disorders ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,030104 developmental biology ,General Energy ,Monomer ,chemistry ,Biochemistry ,Neurological ,Chemical Sciences ,biology.protein ,Dementia ,030217 neurology & neurosurgery - Abstract
The soluble oligomeric form of the amyloid beta (Aβ) peptide is the major causative agent in the molecular pathogenesis of Alzheimer's disease (AD). We have previously developed a pyrroline-nitroxyl fluorene compound (SLF) that blocks the toxicity of Aβ. Here we introduce the multi-parametric surface plasmon resonance (MP-SPR) approach to quantify SLF binding and effect on the self-association of the peptide via a label-free, real-time approach. Kinetic analysis of SLF binding to Aβ and measurements of layer thickness alterations inform on the mechanism underlying the ability of SLF to inhibit Aβ toxicity and its progression towards larger oligomeric assemblies. Depending on the oligomeric state of Aβ, distinct binding affinities for SLF are revealed. The Aβ monomer and dimer uniquely possess sub-nanomolar affinity for SLF via a non-specific mode of binding. SLF binding is weaker in oligomeric Aβ, which displays an affinity for SLF on the order of 100 μM. To complement these experiments we carried out molecular docking and molecular dynamics simulations to explore how SLF interacts with the Aβ peptide. The MP-SPR results together with in silico modeling provide affinity data for the SLF-Aβ interaction and allow us to develop a new general method for examining protein aggregation.
- Published
- 2017
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20. Multimodal Nonlinear Optical Imaging for Sensitive Detection of Multiple Pharmaceutical Solid-State Forms and Surface Transformations
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Sara J. Fraser-Miller, Dunja Novakovic, Timo Laaksonen, Osmo Antikainen, Tatu Rojalin, Leena Peltonen, Antti Isomäki, Clare J. Strachan, and Jukka Saarinen
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Surface (mathematics) ,Surface Properties ,Indomethacin ,02 engineering and technology ,Multimodal Imaging ,01 natural sciences ,Analytical Chemistry ,symbols.namesake ,Narrowband ,Optics ,Limit of Detection ,Multimodal imaging ,Chemistry ,business.industry ,Optical Imaging ,010401 analytical chemistry ,Resolution (electron density) ,Hyperspectral imaging ,Humidity ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Amorphous solid ,Principal component analysis ,symbols ,0210 nano-technology ,business ,Raman scattering - Abstract
Two nonlinear imaging modalities, coherent anti-Stokes Raman scattering (CARS) and sum-frequency generation (SFG), were successfully combined for sensitive multimodal imaging of multiple solid-state forms and their changes on drug tablet surfaces. Two imaging approaches were used and compared: (i) hyperspectral CARS combined with principal component analysis (PCA) and SFG imaging and (ii) simultaneous narrowband CARS and SFG imaging. Three different solid-state forms of indomethacin-the crystalline gamma and alpha forms, as well as the amorphous form-were clearly distinguished using both approaches. Simultaneous narrowband CARS and SFG imaging was faster, but hyperspectral CARS and SFG imaging has the potential to be applied to a wider variety of more complex samples. These methodologies were further used to follow crystallization of indomethacin on tablet surfaces under two storage conditions: 30 °C/23% RH and 30 °C/75% RH. Imaging with (sub)micron resolution showed that the approach allowed detection of very early stage surface crystallization. The surfaces progressively crystallized to predominantly (but not exclusively) the gamma form at lower humidity and the alpha form at higher humidity. Overall, this study suggests that multimodal nonlinear imaging is a highly sensitive, solid-state (and chemically) specific, rapid, and versatile imaging technique for understanding and hence controlling (surface) solid-state forms and their complex changes in pharmaceuticals.
- Published
- 2017
- Full Text
- View/download PDF
21. Label-free characterization and real-time monitoring of cell uptake of extracellular vesicles
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Heikki Saari, Erja Kerkelä, Marjo Yliperttula, Saara Laitinen, Tapani Viitala, Annika Koponen, Elisa Lázaro-Ibáñez, Teemu Suutari, Tatu Rojalin, Pia Siljander, Division of Pharmaceutical Biosciences, Drug Research Program, Pharmaceutical biophysics group, Extracellular Vesicles, Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, Division of Pharmaceutical Chemistry and Technology, and Biopharmaceutics Group
- Subjects
Male ,ENDOCYTOSIS ,116 Chemical sciences ,Cell ,Biomedical Engineering ,Biophysics ,Time-gated surface-enhanced Raman spectroscopy ,Nanoparticle tracking analysis ,02 engineering and technology ,Biosensing Techniques ,Endocytosis ,Spectrum Analysis, Raman ,01 natural sciences ,Extracellular vesicles ,Flow cytometry ,RED-BLOOD-CELLS ,Extracellular Vesicles ,SUBSTRATE ,Electrochemistry ,medicine ,Humans ,SURFACE-PLASMON RESONANCE ,Surface plasmon resonance ,HEMOGLOBIN ,MICROVESICLES ,Cell uptake ,EXOSOMES ,318 Medical biotechnology ,medicine.diagnostic_test ,Chemistry ,PLATELET MICROPARTICLES ,010401 analytical chemistry ,General Medicine ,Surface Plasmon Resonance ,021001 nanoscience & nanotechnology ,CANCER ,Microvesicles ,0104 chemical sciences ,Red blood cell ,medicine.anatomical_structure ,317 Pharmacy ,ENHANCED RAMAN-SPECTROSCOPY ,Prostate cancer cells ,Nanoparticles ,221 Nano-technology ,0210 nano-technology ,Biotechnology - Abstract
Extracellular vesicles (EVs) have the ability to function as molecular vehicles and could therefore be harnessed to deliver drugs to target cells in diseases such as cancer. The composition of EVs determines their function as well as their interactions with cells, which consequently affects the cell uptake efficacy of EVs. In this study, we present two novel label-free approaches for studying EVs; characterization of EV composition by time-gated surface-enhanced Raman spectroscopy (TG-SERS) and monitoring the kinetics and amount of cellular uptake of EVs by surface plasmon resonance (SPR) in real-time. Using these methods, we characterized the most abundant EVs of human blood, red blood cell (RBC)- and platelet (PLT)-derived EVs and studied their interactions with prostate cancer cells. Complementary studies were performed with nanoparticle tracking analysis for concentration and size determinations of EVs, zeta potential measurements for surface charge analysis, and fluorophore-based confocal imaging and flow cytometry to confirm EV uptake. Our results revealed distinct biochemical features between the studied EVs and demonstrated that PLT-derived EVs were more efficiently internalized by PC-3 cells than RBC-derived EVs. The two novel label-free techniques introduced in this study were found to efficiently complement conventional techniques and paves the way for further use of TG-SERS and SPR in EV studies.
- Published
- 2020
22. Transformable peptide nanoparticles arrest HER2 signalling and cause cancer cell death in vivo
- Author
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Tatu Rojalin, Di Jing, Zhaoqing Cong, Wenwu Xiao, Nian Jiang, Yi Wu, Christopher M. Baehr, Jian Jian Li, Lei Wang, Yuanpei Li, Kit S. Lam, Lu Zhang, and Dalin Zhang
- Subjects
Receptor, ErbB-2 ,Biomedical Engineering ,Bioengineering ,Peptide ,Breast Neoplasms ,Antineoplastic Agents ,Apoptosis ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Article ,Cell Line ,Mice ,Breast cancer ,ErbB-2 ,In vivo ,Cell Line, Tumor ,Breast Cancer ,medicine ,Animals ,Humans ,General Materials Science ,Electrical and Electronic Engineering ,Nanoscience & Nanotechnology ,Receptor ,skin and connective tissue diseases ,neoplasms ,Cancer ,chemistry.chemical_classification ,Tumor ,Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,medicine.disease ,Phenotype ,Xenograft Model Antitumor Assays ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Cell culture ,Cancer cell ,Cancer research ,Nanoparticles ,Female ,0210 nano-technology ,Peptides ,Signal Transduction - Abstract
Human epidermal growth factor receptor 2 (HER2) is overexpressed in over 20% of breast cancers. The dimerization of HER2 receptors leads to the activation of down-stream signals enabling proliferation and survival of malignant phenotypes. Owing to the high expression levels of HER2, combination therapies are currently required for the treatment of HER2-positive breast cancer. Here, we designed non-toxic transformable peptides that self-assemble into micelles in aqueous conditions, but, upon binding to HER2 on cancer cells, transform into nanofibers, which disrupt HER2 dimerization and subsequent downstream signalling events, leading to apoptosis of cancer cells. The phase transformation of the peptides enables specific HER2-targeting and inhibition of HER2 dimerization blocks the expression of proliferation and survival genes in the nucleus. We demonstrate that these transformable peptides can be used as a monotherapy for the treatment of HER2+ breast cancer in mouse xenograft models.
- Published
- 2020
23. One-bead one-compound combinatorial library derived targeting ligands for detection and treatment of oral squamous cancer
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Yan-lei Liu, Ruiwu Liu, Tatu Rojalin, Randall H. Kramer, Fan Yang, Christopher M. Baehr, Yousif Ajena, Hongyong Zhang, Wenwu Xiao, Kit S. Lam, and Xiaocen Li
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0301 basic medicine ,Oncology and Carcinogenesis ,Bioengineering ,oral squamous cancer ,03 medical and health sciences ,optical imaging ,0302 clinical medicine ,orthotopic xenograft model ,Rare Diseases ,In vivo ,medicine ,Dental/Oral and Craniofacial Disease ,Cytotoxicity ,cancer-targeting peptide ,Cancer ,α3 integrin ,Chemistry ,Prevention ,medicine.disease ,In vitro ,3. Good health ,stomatognathic diseases ,030104 developmental biology ,Oncology ,Cell culture ,5.1 Pharmaceuticals ,030220 oncology & carcinogenesis ,Biotinylation ,Cancer cell ,Cancer research ,Development of treatments and therapeutic interventions ,Digestive Diseases ,Ex vivo ,Research Paper - Abstract
Oral squamous cancers (OSC) are hallmarked by poor prognosis, delayed clinical detection, and a lack of defined, characteristic biomarkers. By screening combinatorial one-bead one-compound (OBOC) peptide libraries against oral squamous cancer cell lines, two cyclic peptide ligands, LLY12 and LLY13 were previously identified. These ligands are capable of specific binding to the oral cancer cell lines (MOK-101, HSC-3, SCC-4 and SCC-10a) but not non-cancerous keratinocytes, leukocytes, fibroblast, and endothelial cells. These two peptides were synthesized and evaluated for their binding property, cytotoxicity and cell permeability. In vitro studies indicate that both LLY12 and LLY13 were able to bind to oral cancer cells with high specificity but did not show any cytotoxicity against human keratinocytes. Biotinylated LLY13, in complex with streptavidin-alexa488 was taken up by live oral cancer cells, thus rendering it as an excellent candidate vehicle for efficient delivery of drug loaded-nanoparticles. In vivo and ex vivo near infra-red fluorescence imaging studies confirmed the in vivo targeting efficiency and specificity of LLY13 in oral cancer orthotopic murine xenograft model. In vivo studies also showed that LLY13 was able to accumulate in the OSC tumors and demarcate the tumor margins in orthotopic xenograft model. Together, our data supports LLY13 as a promising theranostic agent against OSC.
- Published
- 2019
24. Chemical characteristics and stability of eucalyptus kraft pulps bleached with tertiary amine catalyzed hypochlorous acid
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Tapani Vuorinen, Tatu Rojalin, Ghazaleh Afsahi, Department of Bioproducts and Biosystems, University of Helsinki, Wood Chemistry, Aalto-yliopisto, and Aalto University
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Polymers and Plastics ,Tertiary amine ,genetic structures ,02 engineering and technology ,engineering.material ,010402 general chemistry ,Kappa number ,01 natural sciences ,Degree of polymerization ,chemistry.chemical_compound ,Carbonyl content ,stomatognathic system ,Brightness reversion ,Lignin ,Cellulose ,Hydrogen peroxide ,Chlorine dioxide ,Pulp (paper) ,Catalytic bleaching ,021001 nanoscience & nanotechnology ,Organochlorine content ,0104 chemical sciences ,chemistry ,engineering ,sense organs ,0210 nano-technology ,Kraft paper ,Nuclear chemistry - Abstract
We recently found that subsequent treatments of hardwood kraft pulps with a tertiary amine (DABCO; 1,4-diazabicyclo[2.2.2]octane) catalyzed hypochlorous acid (Hcat), ozone (Z) and hydrogen peroxide (P) may provide full brightness with low chemical dosages in a short overall reaction time. Here we report chemical characteristics and stability of Hcat–Z–P bleached eucalyptus kraft pulps. In comparison with a normal ECF (elementary chlorine free) bleached pulp the Hcat–Z–P bleached pulps had low carbonyl group content while the degree of polymerization of cellulose remained at high level. However, the brightness of the Hcat–Z–P bleached pulps was reversed more easily under humid ageing conditions in comparison with the ECF bleached pulp. The discoloration was accompanied by an increase in Raman emission at 1560 cm−1 which is indicative of formation of highly conjugated chromophores. The brightness reversion did not correlate with the carbonyl content that is often considered to be the main origin of the brightness loss under humid conditions. In contrast, the brightness instability of the catalytically bleached pulps possibly resulted from the relatively high organochlorine content.
- Published
- 2019
25. FLIM reveals alternative EV-mediated cellular up-take pathways of paclitaxel
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Marjo Yliperttula, L. Niemi, Timo Laaksonen, Ekaterina S. Lisitsyna, Kaisa Rautaniemi, Tatu Rojalin, Heikki Saari, Elina Vuorimaa-Laukkanen, O. Nivaro, Tampere University, Chemistry and Bioengineering, Research group: Chemistry & Advanced Materials, Faculty of Pharmacy, Division of Pharmaceutical Biosciences, Drug Research Program, Doctoral Programme in Drug Research, Doctoral Programme in Materials Research and Nanosciences, Nanobio Pharmaceutics, and Biopharmaceutics Group
- Subjects
0301 basic medicine ,Fluorescence-lifetime imaging microscopy ,Paclitaxel ,116 Chemical sciences ,Pharmaceutical Science ,Exosomes ,Endocytosis ,Cell membrane ,03 medical and health sciences ,Extracellular Vesicles ,PLASMON RESONANCE SPECTROSCOPY ,medicine ,Humans ,LIFETIME IMAGING MICROSCOPY ,INFECTIOUS-DISEASES ,DRUG-DELIVERY ,CANCER CELLS ,Cancer ,Drug Carriers ,IMMUNE-RESPONSES ,Chemistry ,Vesicle ,Optical Imaging ,Prostate ,FLUORESCENCE MICROSCOPY ,EMERGING ROLE ,Antineoplastic Agents, Phytogenic ,Microvesicles ,Cell biology ,Drug Liberation ,030104 developmental biology ,medicine.anatomical_structure ,Targeted drug delivery ,Microscopy, Fluorescence ,317 Pharmacy ,Drug delivery ,Cancer cell ,PC-3 Cells ,Fluorescence lifetime imaging microscopy ,MEMBRANE-VESICLES - Abstract
In response to physiological and artificial stimuli, cells generate nano-scale extracellular vesicles (EVs) by encapsulating biomolecules in plasma membrane-derived phospholipid envelopes. These vesicles are released to bodily fluids, hence acting as powerful endogenous mediators in intercellular signaling. EVs provide a compelling alternative for biomarker discovery and targeted drug delivery, but their kinetics and dynamics while interacting with living cells are poorly understood. Here we introduce a novel method, fluorescence lifetime imaging microscopy (FLIM) to investigate these interaction attributes. By FLIM, we show distinct cellular uptake mechanisms of different EV subtypes, exosomes and microvesicles, loaded with anti-cancer agent, paclitaxel. We demonstrate differences in intracellular behavior and drug release profiles of paclitaxel-containing EVs. Exosomes seem to deliver the drug mostly by endocytosis while microvesicles enter the cells by both endocytosis and fusion with cell membrane. This research offers a new real-time method to investigate EV kinetics with living cells, and it is a potential advancement to complement the existing techniques. The findings of this study improve the current knowledge in exploiting EVs as next-generation targeted drug delivery systems. publishedVersion
- Published
- 2018
26. Fluorescence-suppressed time-resolved Raman spectroscopy of pharmaceuticals using complementary metal-oxide semiconductor (CMOS) single-photon avalanche diode (SPAD) detector
- Author
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Keith C. Gordon, Clare J. Strachan, Marjo Yliperttula, Juha Kostamovaara, Timo Laaksonen, Leonardo Galvis, Lauri T. Kurki, Sebastian Wachsmann-Hogiu, Tatu Rojalin, Tapani Viitala, Faculty of Pharmacy, Division of Pharmaceutical Biosciences, Clare Strachan / Research Group, Division of Pharmaceutical Chemistry and Technology, Nanobio Pharmaceutics, Formulation and industrial pharmacy, Pharmaceutical biophysics group, Preclinical Drug Formulation and Analysis group, Drug Research Program, Biopharmaceutics Group, Pharmaceutical Spectroscopy and Imaging, University of California Davis, University of Oulu, University of Helsinki, University of Otago, Department of Forest Products Technology, Aalto-yliopisto, and Aalto University
- Subjects
Photoluminescence ,CMOS SPAD ,Time resolved ,02 engineering and technology ,Spectrum Analysis, Raman ,01 natural sciences ,Biochemistry ,Fluorescence ,Fluorescence spectroscopy ,Analytical Chemistry ,law.invention ,MOLECULES ,symbols.namesake ,Optics ,law ,Fluorescence suppression ,SPECTRA ,Raman ,Process analytical technology (PAT) ,Avalanche diode ,business.industry ,Chemistry ,010401 analytical chemistry ,Detector ,Oxides ,021001 nanoscience & nanotechnology ,Laser ,0104 chemical sciences ,INDOMETHACIN ,Semiconductor ,Pharmaceutical Preparations ,REJECTION ,Single-photon avalanche diode ,Metals ,317 Pharmacy ,symbols ,Pharmaceuticals ,0210 nano-technology ,business ,Raman spectroscopy ,Research Paper - Abstract
In this work, we utilize a short-wavelength, 532-nm picosecond pulsed laser coupled with a time-gated complementary metal-oxide semiconductor (CMOS) single-photon avalanche diode (SPAD) detector to acquire Raman spectra of several drugs of interest. With this approach, we are able to reveal previously unseen Raman features and suppress the fluorescence background of these drugs. Compared to traditional Raman setups, the present time-resolved technique has two major improvements. First, it is possible to overcome the strong fluorescence background that usually interferes with the much weaker Raman spectra. Second, using the high photon energy excitation light source, we are able to generate a stronger Raman signal compared to traditional instruments. In addition, observations in the time domain can be performed, thus enabling new capabilities in the field of Raman and fluorescence spectroscopy. With this system, we demonstrate for the first time the possibility of recording fluorescence-suppressed Raman spectra of solid, amorphous and crystalline, and non-photoluminescent and photoluminescent drugs such as caffeine, ranitidine hydrochloride, and indomethacin (amorphous and crystalline forms). The raw data acquired by utilizing only the picosecond pulsed laser and a CMOS SPAD detector could be used for identifying the compounds directly without any data processing. Moreover, to validate the accuracy of this time-resolved technique, we present density functional theory (DFT) calculations for a widely used gastric acid inhibitor, ranitidine hydrochloride. The obtained time-resolved Raman peaks were identified based on the calculations and existing literature. Raman spectra using non-time-resolved setups with continuous-wave 785- and 532-nm excitation lasers were used as reference data. Overall, this demonstration of time-resolved Raman and fluorescence measurements with a CMOS SPAD detector shows promise in diverse areas, including fundamental chemical research, the pharmaceutical setting, process analytical technology (PAT), and the life sciences. Graphical abstract Time-resolved Raman measurement of a pharmaceutical sample using the complementary metal-oxide semiconductor (CMOS) single photon avalanche diode (SPAD) detector technology Electronic supplementary material The online version of this article (doi:10.1007/s00216-015-9156-6) contains supplementary material, which is available to authorized users.
- Published
- 2015
- Full Text
- View/download PDF
27. Targeting Tumor-Associated Exosomes with Integrin-Binding Peptides
- Author
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Sidhartha Hazari, Tingjuan Gao, Ruiwu Liu, Yuchen Tang, Alisha Knudson, Kit S. Lam, Tatu Rojalin, Marjo Yliperttula, Randy P. Carney, Tapani Viitala, Division of Pharmaceutical Biosciences, Drug Research Program, Pharmaceutical biophysics group, and Biopharmaceutics Group
- Subjects
0301 basic medicine ,ADSORPTION ,Biomedical Engineering ,Peptide binding ,exosomes ,biosensor ,Proteomics ,Article ,General Biochemistry, Genetics and Molecular Biology ,Flow cytometry ,Biomaterials ,HIGH-AFFINITY ,03 medical and health sciences ,0302 clinical medicine ,microRNA ,medicine ,diagnostics ,cancer ,SURFACE-PLASMON RESONANCE ,Receptor ,Integrin binding ,318 Medical biotechnology ,medicine.diagnostic_test ,IDENTIFICATION ,RECEPTOR ,Chemistry ,optical tweezers ,MICRORNA ,EXTRACELLULAR VESICLES ,biosensors ,Microvesicles ,Cell biology ,CANCER EXOSOMES ,030104 developmental biology ,Membrane protein ,317 Pharmacy ,030220 oncology & carcinogenesis ,216 Materials engineering ,CELLS ,LIBRARY ,Biotechnology - Abstract
All cells expel a variety of nanosized extracellular vesicles (EVs), including exosomes, with composition reflecting the cells' biological state. Cancer pathology is dramatically mediated by EV trafficking via key proteins, lipids, metabolites, and microRNAs. Recent proteomics evidence suggests that tumor-associated exosomes exhibit distinct expression of certain membrane proteins, rendering those proteins as attractive targets for diagnostic or therapeutic application, yet it is not currently feasible to distinguish circulating EVs in complex biofluids according to their tissue of origin or state of disease. Here, peptide binding to tumor-associated EVs via overexpressed membrane protein is demonstrated. It is found that SKOV-3 ovarian tumor cells and their released EVs express alpha(3)beta(1) integrin, which can be targeted by the in-house cyclic nonapeptide, LXY30. After measuring bulk SKOV-3 EV association with LXY30 by flow cytometry, Raman spectral analysis of laser-trapped single exosomes with LXY30-dialkyne conjugate enables the differentiation of cancer-associated exosomes from noncancer exosomes. Furthermore, the foundation for a highly specific detection platform for tumor-EVs in solution with biosensor surface-immobilized LXY30 is introduced. LXY30 not only exhibits high specificity and affinity to alpha(3)beta(1) integrin-expressing EVs, but also reduces EV uptake into SKOV-3 parent cells, demonstrating the possibility for therapeutic application.
- Published
- 2017
28. Biosensors: Targeting Tumor-Associated Exosomes with Integrin-Binding Peptides (Adv. Biosys. 5/2017)
- Author
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Marjo Yliperttula, Tatu Rojalin, Randy P. Carney, Alisha Knudson, Tapani Viitala, Yuchen Tang, Tingjuan Gao, Kit S. Lam, Sidhartha Hazari, and Ruiwu Liu
- Subjects
0303 health sciences ,Chemistry ,Biomedical Engineering ,Cancer ,02 engineering and technology ,021001 nanoscience & nanotechnology ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,Microvesicles ,Cell biology ,Biomaterials ,03 medical and health sciences ,medicine ,0210 nano-technology ,Biosensor ,030304 developmental biology ,Integrin binding - Published
- 2017
- Full Text
- View/download PDF
29. Time-resolved SERS for characterizing extracellular vesicles
- Author
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Petter Somersalo, Marjo Yliperttula, Mikko P. Turunen, Saara Laitinen, Heikki Saari, Sebastian Wachsmann-Hogiu, Tapani Viitala, Tatu Rojalin, and Zachary J. Smith
- Subjects
Materials science ,Characterization methods ,Nanotechnology ,Information reporting ,Surface-enhanced Raman spectroscopy ,Extracellular vesicles ,Nanopillar - Abstract
The aim of this work is to develop a platform for characterizing extracellular vesicles (EV) by using gold-polymer nanopillar SERS arrays simultaneously circumventing the photoluminescence-related disadvantages of Raman with a time-resolved approach. EVs are rich of biochemical information reporting of, for example, diseased state of the biological system. Currently, straightforward, label-free and fast EV characterization methods with low sample consumption are warranted. In this study, SERS spectra of red blood cell and platelet derived EVs were successfully measured and their biochemical contents analyzed using multivariate data analysis techniques. The developed platform could be conveniently used for EV analytics in general.
- Published
- 2017
- Full Text
- View/download PDF
30. Multi-parametric surface plasmon resonance platform for studying liposome-serum interactions and protein corona formation
- Author
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Otto K. Kari, Seppo Meri, Marjo Yliperttula, Michela Barattin, Arto Urtti, Stefano Salmaso, Tatu Rojalin, Tapani Viitala, Hanna Jarva, Faculty of Pharmacy, Drug Delivery Unit, HUSLAB, Research Programs Unit, Immunobiology Research Program, Department of Bacteriology and Immunology, Medicum, Clinicum, Seppo Meri / Principal Investigator, Division of Pharmaceutical Biosciences, Nanobio Pharmaceutics, Drug Research Program, Pharmaceutical biophysics group, and Biopharmaceutics Group
- Subjects
Serum ,Soft corona ,endocrine system ,Complement system ,Liposome ,Multi-parametric surface plasmon resonance (MP-SPR) ,Opsonin ,Protein corona ,education ,Pharmaceutical Science ,Nanotechnology ,Protein Corona ,02 engineering and technology ,Polyethylene glycol ,010402 general chemistry ,01 natural sciences ,Polyethylene Glycols ,chemistry.chemical_compound ,Corona (optical phenomenon) ,Humans ,Molecule ,Cationic liposome ,Surface plasmon resonance ,Opsonin Proteins ,Surface Plasmon Resonance ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Endotoxins ,chemistry ,317 Pharmacy ,Doxorubicin ,Liposomes ,Biophysics ,Nanocarriers ,0210 nano-technology - Abstract
When nanocarriers are administered into the blood circulation, a complex biomolecular layer known as the “protein corona” associates with their surface. Although the drivers of corona formation are not known, it is widely accepted that this layer mediates biological interactions of the nanocarrier with its surroundings. Label-free optical methods can be used to study protein corona formation without interfering with its dynamics. We demonstrate the proof-of-concept for a multi-parametric surface plasmon resonance (MP-SPR) technique in monitoring the formation of a protein corona on surface-immobilized liposomes subjected to flowing 100 % human serum. We observed the formation of formulation-dependent “hard” and “soft” coronas with distinct refractive indices, layer thicknesses, and surface mass densities. MP-SPR was also employed to determine the affinity (KD) of a complement system molecule (C3b) with cationic liposomes with and without polyethylene glycol. Tendency to create a thick corona correlated with a higher affinity of opsonin C3b for the surface. The label-free platform provides a fast and robust preclinical tool for tuning nanocarrier surface architecture and composition to control protein corona formation. When nanocarriers are administered into the blood circulation, a complex biomolecular layer known as the "protein corona" associates with their surface. Although the drivers of corona formation are not known, it is widely accepted that this layer mediates biological interactions of the nanocarrier with its surroundings. Label-free optical methods can be used to study protein corona formation without interfering with its dynamics. We demonstrate the proof-ofconcept for a multi-parametric surface plasmon resonance (MP-SPR) technique in monitoring the formation of a protein corona on surface-immobilized liposomes subjected to flowing 100 % human serum. We observed the formation of formulation-dependent "hard" and "soft" coronas with distinct refractive indices, layer thicknesses, and surface mass densities. MP-SPR was also employed to determine the affinity (K-D) of a complement system molecule (C3b) with cationic liposomes with and without polyethylene glycol. Tendency to create a thick corona correlated with a higher affinity of opsonin C3b for the surface. The label-free platform provides a fast and robust preclinical tool for tuning nanocarrier surface architecture and composition to control protein corona formation.
- Published
- 2017
31. Raman spectroscopy of single extracellular vesicles reveals subpopulations with varying membrane content (Conference Presentation)
- Author
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Randy P. Carney, Sebastian Wachsmann-Hogiu, Tatu Rojalin, Heikki Saari, Tapani Viitala, Marjo Yliperttula, Zachary J. Smith, Timo Laaksonen, Alisha Knudson, Sidhartha Hazari, Changwon Lee, Elisa Lazaro Ibanez, and Kit S. Lam
- Subjects
Messenger RNA ,Chemistry ,Vesicle ,010401 analytical chemistry ,Nanotechnology ,Proteomics ,01 natural sciences ,Exosome ,Microvesicles ,0104 chemical sciences ,Cell biology ,010309 optics ,Membrane ,Cell culture ,0103 physical sciences ,Cancer cell - Abstract
Exosomes are small (~100nm) membrane bound vesicles excreted by cells as part of their normal biological processes. These extracellular vesicles are currently an area of intense research, since they were recently found to carry functional mRNA that allows transfer of proteins and other cellular instructions between cells. Exosomes have been implicated in a wide range of diseases, including cancer. Cancer cells are known to have increased exosome production, and may use those exosomes to prepare remote environments for metastasis. Therefore, there is a strong need to develop characterization methods to help understand the structure and function of these vesicles. However, current techniques, such as proteomics and genomics technologies, rely on aggregating a large amount of exosome material and reporting on chemical content that is averaged over many millions of exosomes. Here we report on the use of laser-tweezers Raman spectroscopy (LTRS) to probe individual vesicles, discovering distinct heterogeneity among exosomes both within a cell line, as well as between different cell lines. Through principal components analysis followed by hierarchical clustering, we have identified four “subpopulations” of exosomes shared across seven cell lines. The key chemical differences between these subpopulations, as determined by spectral analysis of the principal component loadings, are primarily related to membrane composition. Specifically, the differences can be ascribed to cholesterol content, cholesterol to phospholipid ratio, and surface protein expression. Thus, we have shown LTRS to be a powerful method to probe the chemical content of single extracellular vesicles.
- Published
- 2016
- Full Text
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32. Comment on 'Label-Free Single Exosome Detection Using Frequency Locked Microtoroid Optical Resonators'
- Author
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Sebastian Wachsmann-Hogiu, Changwon Lee, Tatu Rojalin, and Zachary J. Smith
- Subjects
0301 basic medicine ,Physics ,business.industry ,Nanotechnology ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Exosome ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,03 medical and health sciences ,Resonator ,030104 developmental biology ,Electrical and Electronic Engineering ,Photonics ,0210 nano-technology ,business ,Biotechnology ,Label free - Abstract
In a recent paper by Su [ACS Photonics 2015 2, 1241–1245], a microtoroid resonator was demonstrated that is capable of detecting binding events of single exosomes, as well as providing other physical parameters such as size and mass. While we feel the method presented by Su is likely to find significant application in the basic study of exosomes, the clinical significance of this result is overstated in the article. As discussed below, the proof-of-concept results presented depend critically on a xenograft model that is not readily translated into a clinical setting.
- Published
- 2016
- Full Text
- View/download PDF
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