269 results on '"Tatsuya Hirano"'
Search Results
2. Recombinant cyclin B-Cdk1-Suc1 capable of multi-site mitotic phosphorylation in vitro.
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Keishi Shintomi, Yuki Masahara-Negishi, Masami Shima, Shoji Tane, and Tatsuya Hirano
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Medicine ,Science - Abstract
Cyclin-dependent kinase 1 (Cdk1) complexed with cyclin B phosphorylates multiple sites on hundreds of proteins during mitosis. However, it is not fully understood how multi-site mitotic phosphorylation by cyclin B-Cdk1 controls the structures and functions of individual substrates. Here we develop an easy-to-use protocol to express recombinant vertebrate cyclin B and Cdk1 in insect cells from a single baculovirus vector and to purify their complexes with excellent homogeneity. A series of in-vitro assays demonstrate that the recombinant cyclin B-Cdk1 can efficiently and specifically phosphorylate the SP and TP motifs in substrates. The addition of Suc1 (a Cks1 homolog in fission yeast) accelerates multi-site phosphorylation of an artificial substrate containing TP motifs. Importantly, we show that mitosis-specific multi-subunit and multi-site phosphorylation of the condensin I complex can be recapitulated in vitro using recombinant cyclin B-Cdk1-Suc1. The materials and protocols described here will pave the way for dissecting the biochemical basis of critical mitotic processes that accompany Cdk1-mediated large-scale phosphorylation.
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- 2024
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3. Cell cycle-specific loading of condensin I is regulated by the N-terminal tail of its kleisin subunit
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Shoji Tane, Keishi Shintomi, Kazuhisa Kinoshita, Yuko Tsubota, Makoto M Yoshida, Tomoko Nishiyama, and Tatsuya Hirano
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mitotic chromosome assembly ,condensin ,kleisin ,Xenopus egg extracts ,cell cycle regulation ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Condensin I is a pentameric protein complex that plays an essential role in mitotic chromosome assembly in eukaryotic cells. Although it has been shown that condensin I loading is mitosis specific, it remains poorly understood how the robust cell cycle regulation of condensin I is achieved. Here, we set up a panel of in vitro assays to demonstrate that cell cycle-specific loading of condensin I is regulated by the N-terminal tail (N-tail) of its kleisin subunit CAP-H. Deletion of the N-tail accelerates condensin I loading and chromosome assembly in Xenopus egg mitotic extracts. Phosphorylation-deficient and phosphorylation-mimetic mutations in the CAP-H N-tail decelerate and accelerate condensin I loading, respectively. Remarkably, deletion of the N-tail enables condensin I to assemble mitotic chromosome-like structures even in interphase extracts. Together with other extract-free functional assays in vitro, our results uncover one of the multilayered mechanisms that ensure cell cycle-specific loading of condensin I onto chromosomes.
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- 2022
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4. Molecular dissection of condensin II-mediated chromosome assembly using in vitro assays
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Makoto M Yoshida, Kazuhisa Kinoshita, Yuuki Aizawa, Shoji Tane, Daisuke Yamashita, Keishi Shintomi, and Tatsuya Hirano
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chromosomes ,condensin ,mitosis ,smc proteins ,heat repeats ,ATPase ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
In vertebrates, condensin I and condensin II cooperate to assemble rod-shaped chromosomes during mitosis. Although the mechanism of action and regulation of condensin I have been studied extensively, our corresponding knowledge of condensin II remains very limited. By introducing recombinant condensin II complexes into Xenopus egg extracts, we dissect the roles of its individual subunits in chromosome assembly. We find that one of two HEAT subunits, CAP-D3, plays a crucial role in condensin II-mediated assembly of chromosome axes, whereas the other HEAT subunit, CAP-G2, has a very strong negative impact on this process. The structural maintenance of chromosomes ATPase and the basic amino acid clusters of the kleisin subunit CAP-H2 are essential for this process. Deletion of the C-terminal tail of CAP-D3 increases the ability of condensin II to assemble chromosomes and further exposes a hidden function of CAP-G2 in the lateral compaction of chromosomes. Taken together, our results uncover a multilayered regulatory mechanism unique to condensin II, and provide profound implications for the evolution of condensin II.
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- 2022
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5. Guiding functions of the C-terminal domain of topoisomerase IIα advance mitotic chromosome assembly
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Keishi Shintomi and Tatsuya Hirano
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Science - Abstract
Topoisomerase IIα (topo IIα) is critical for mitotic chromatid assembly. Here the authors report a refinement of the mitotic chromatid reconstitution assay and provide novel insights into the C-terminal domain (CTD) of topo IIα.
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- 2021
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6. Significant Improvement of Copper Dry Etching Property of a High-Pressure Hydrogen-Based Plasma by Nitrogen Gas Addition
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Hiromasa Ohmi, Jumpei Sato, Yoshiki Shirasu, Tatsuya Hirano, Hiroaki Kakiuchi, and Kiyoshi Yasutake
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Chemistry ,QD1-999 - Published
- 2019
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7. Usefulness of several factors and clinical scoring models in preoperative diagnosis of complicated appendicitis.
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Kenji Fujiwara, Atsushi Abe, Toshihiro Masatsugu, Tatsuya Hirano, Kiyohisa Hiraka, and Masayuki Sada
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Medicine ,Science - Abstract
BackgroundThe preoperative distinction between uncomplicated and complicated appendicitis is important to determine the appropriate treatments, such as antibiotics, surgery, or interval appendectomy. Computed tomography (CT) plays an important role; however, combining clinical and imaging factors may make preoperative evaluation more reliable. This study evaluated and analyzed cases and the usefulness of several preoperative factors and clinical scoring models to detect complicated appendicitis.MethodsA total of 203 patients preoperatively diagnosed with acute appendicitis at our facility were included. Complicated appendicitis was defined as appendicitis with gangrene, perforated appendix, and/or abscess formation. Preoperative factors were collected from published clinical scoring models; patient information, symptoms, signs, results of laboratory tests, and findings of CT. Factors were analyzed using a chi-squared test and the Mann-Whitney U test.ResultsThe preoperative factors were compared between 151 uncomplicated and 52 complicated appendicitis patients. The significant factors were age ≥40, duration of symptoms >24 hours, body temperature ≥37.3°C, high levels of CRP, findings in CT scan (appendix diameter ≥10 mm, stranding of the adjacent fat, presence of fluid collection, and suspicion of abscess or perforation). We also evaluated the usefulness of clinical scoring models for the detection of complicated appendicitis and found the Appendicitis Inflammatory Response score and two prediction models (Atema score and Imaoka score) showed significance (p < 0.05). High serum CRP level was significantly associated with complicated appendicitis (p < 0.001), and the predicted existence rates of complicated appendicitis were 52.7% for serum CRP level ≥50mg/L, 74.4% for ≥100mg/L, and 82.6% for ≥150mg/L.ConclusionThe results demonstrated several preoperative factors and clinical scoring models to increase suspicion of complicated appendicitis. Specifically, high serum levels of CRP may be a useful factor in predicting complicated appendicitis prior to surgery when supported by clinical findings and imaging; however, further research is needed.
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- 2021
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8. Preoperative diagnoses and identification rates of unexpected gallbladder cancer.
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Kenji Fujiwara, Toshihiro Masatsugu, Atsushi Abe, Tatsuya Hirano, and Masayuki Sada
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Medicine ,Science - Abstract
BackgroundUnexpected gallbladder cancer (UGBC) is sometimes found in the resected gallbladder of patients during or after surgery. Some reports have indicated UGBC identification rates for all gallbladder surgeries, but scarce data are available for the UGBC identification rates for specific gallbladder diseases. The present study was performed to clarify UGBC rates and the factors suspicious for UGBC categorized according to preoperative diagnoses, in patients undergoing laparoscopic cholecystectomy (LSC).MethodsWe recorded data for all LSC surgeries performed in the Department of Surgery, Sada Hospital, Japan since 1991, and analyzed the 28-year data. We used the chi-square test and Kaplan-Meier analysis for this retrospective case-control study.ResultsThe UGBC identification rate was 0.69% (63/9186 patients). The UGBC identification rates categorized according to the preoperative diagnoses were 1.3% (13/969) for acute cholecystitis, 2.4% (16/655) for benign tumor, 2.0% (28/1383) for chronic cholecystitis or cholecystitis, and 0.054% (3/5585) for cholecystolithiasis. The percentage of older patients (≥ 60 years) was significantly higher in UGBCs compared with cases finally diagnosed as benign in each group categorized according to the preoperative diagnoses (p≤0.0014), except for cholecystolithiasis. In cases pre-diagnosed as benign tumor, UGBCs were associated with higher rates of thickened gallbladder wall compared with benign tumor (69.2% vs. 27.9%, respectively; p = 0.0011). UGBCs pre-diagnosed as acute cholecystitis had higher T2-T4 rates (100% vs. 64.3%, respectively; pConclusionsUGBC identification rates depend on the preoperative diagnosis and range from 0.054% to 2.4%. Older age (≥ 60 years) could be related to UGBC, and a pre-diagnosis of acute cholecystitis might indicate more advanced cancer compared with a pre-diagnosis of chronic cholecystitis.
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- 2020
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9. Characterization of sugar metabolism in the stem of Tachisuzuka, a whole-crop silage rice cultivar with high sugar content in the stem
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Yoichi Hashida, Sakurako Kadoya, Masaki Okamura, Yu Sugimura, Tatsuya Hirano, Tatsuro Hirose, Satoshi Kondo, Chikara Ohto, Ryu Ohsugi, and Naohiro Aoki
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Forage rice ,Oryza sativa L ,sugar metabolism ,whole-crop silage ,Plant culture ,SB1-1110 - Abstract
Tachisuzuka, a rice cultivar for whole-crop silage, is characterized by a small panicle and high sugar content in the stem. Our previous study suggests that the high sugar content in the stem of Tachisuzuka is due to a factor other than the small panicle. To characterize sugar metabolism in the stem of Tachisuzuka, here we compared carbohydrate content, enzyme activity, and the expression of genes involved in sugar metabolism in the stem between Tachisuzuka and its parental variety, Kusanohoshi. Thinning the panicles of Kusanohoshi increased the starch content in the leaf sheath and internode but did not increase the sucrose content in the leaf sheath to the same level as that of Tachisuzuka. This suggests that Tachisuzuka has high potential to accumulate sucrose in its leaf sheath. Comparison of enzyme activity showed that the hexokinase activities in the leaf sheath tended to be higher in Tachisuzuka than Kusanohoshi or panicle-thinned Kusanohoshi, suggesting that glucokinase or fructokinase affects sugar accumulation in the stem of Tachisuzuka. Comparative transcriptome analysis revealed the differences in expression levels of carbohydrate-related genes between Tachisuzuka and Kusanohoshi. In particular, the expression levels of ISA2, which encodes starch-debranching enzyme, and TMT2, which encodes tonoplast monosaccharide transporter – both of which maybe involved in sugar accumulation in grass stems – were higher in Tachisuzuka than Kusanohoshi. Thus, these enzymes and transporters may contribute to the high sugar content in the stem of Tachisuzuka.
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- 2018
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10. Two β-amylase genes, OsBAM2 and OsBAM3, are involved in starch remobilization in rice leaf sheaths
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Tatsuya Hirano, Takayuki Higuchi, Minako Hirano, Yu Sugimura, and Hiroyasu Michiyama
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β-Amylase ,leaf sheath ,Oryza sativa L ,starch degradation ,Plant culture ,SB1-1110 - Abstract
To identify mechanisms of starch degradation in rice leaf sheaths at the post-heading stage, we investigated the function of OsBAM2 and OsBAM3, which encode plastid-targeted active β-amylase isoforms, in starch remobilization in leaf sheaths. The starch content in the second leaf sheaths below the flag leaf (the third leaf sheaths) peaked at the flag leaf emergence stage and gradually decreased until 15 days after heading. The mRNA levels of OsBAM2 and OsBAM3 in the third leaf sheaths increased from the flag leaf emergence stage to the heading stage when the starch content began to decrease. However, these mRNA levels did not always remain high during post-heading. Overexpression of OsBAM2 or OsBAM3 markedly repressed starch accumulation in the third leaf sheaths, showing that OsBAM2 and OsBAM3 function in starch degradation in rice leaf sheaths. In contrast, no significant differences in starch content in the third leaf sheaths were detected between knockdown plants of OsBAM2 or OsBAM3 and non-transgenic wild-type plants. Our results suggest that reduced expression of the individual genes, OsBAM2 or OsBAM3, does not result in excess accumulation of starch in the leaf sheaths, probably because of the complementary function of another gene or the action of other genes encoding starch-degrading .
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- 2016
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11. Modeling the functions of condensin in chromosome shaping and segregation.
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Yuji Sakai, Atsushi Mochizuki, Kazuhisa Kinoshita, Tatsuya Hirano, and Masashi Tachikawa
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Biology (General) ,QH301-705.5 - Abstract
The mechanistic details underlying the assembly of rod-shaped chromosomes during mitosis and how they segregate from each other to act as individually mobile units remain largely unknown. Here, we construct a coarse-grained physical model of chromosomal DNA and condensins, a class of large protein complexes that plays key roles in these processes. We assume that condensins have two molecular activities: consecutive loop formation in DNA and inter-condensin attractions. Our simulation demonstrates that both of these activities and their balancing acts are essential for the efficient shaping and segregation of mitotic chromosomes. Our results also demonstrate that the shaping and segregation processes are strongly correlated, implying their mechanistic coupling during mitotic chromosome assembly. Our results highlight the functional importance of inter-condensin attractions in chromosome shaping and segregation.
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- 2018
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12. Identification of Two Plastid-Targeted β-Amylases in Rice
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Tatsuya Hirano, Yusuke Takahashi, Hiroshi Fukayama, and Hiroyasu Michiyama
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ß-Amylase ,Oryza sativa L. ,Starch metabolism ,Plant culture ,SB1-1110 - Abstract
In order to identify β-amylase isoforms acting inside plastids in rice (Oryza sativa L.), in the rice genome database we searched the genes predicted to encode β-amylase-like proteins, and designated them OsBAM1−9. OsBAM1, OsBAM7, and OsBAM9 genes were mainly expressed in germinating seeds and developing caryopses. In contrast, the transcripts of OsBAM2, OsBAM3, OsBAM4 and OsBAM5, which have a putative chloroplast transit peptide in their N-terminal regions, were mainly detected in leaf blades, leaf sheaths and internodes after heading. Soluble protein fractions prepared from Escherichia coli containing recombinant OsBAM2 and OsBAM3 proteins had significant β-amylase activity. Furthermore, OsBAM2-GFP and OsBAM3-GFP fusion proteins introduced into epidermis of Allium cepa scaly bulb were localized to the plastids. These results strongly suggest that OsBAM2 and OsBAM3 are plastid-targeted active β-amylase.
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- 2011
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13. Effects of Day Length and Air and Soil Temperatures on Sesamin and Sesamolin Contents of Sesame Seed
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Tadashi Kumazaki, Yuko Yamada, Shusaku Karaya, Mariko Kawamura, Tatsuya Hirano, Satoko Yasumoto, Masumi Katsuta, and Hiroyasu Michiyama
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Day length ,Lignan ,Seed weight ,Sesame ,Sesamin ,Sesamolin ,Temperature ,Plant culture ,SB1-1110 - Abstract
The lignans, e.g., sesamin and sesamolin, are components of the functional food sesame (Sesamum indicum L.) seed. This study aims to clarify the effects of environmental factors during ripening on the concentrations of these lignans to produce lignan-rich seeds. Here, we examined the effects of 4 factors (seeding time, day length, air and soil temperatures). The concentrations of sesamin and sesamolin in the seed from the capsule at different nodes on the stem were monitored using the high performance liquid chromatography (HPLC). A low air-temperature (22/15°C) during ripening increased the concentrations in the seed at the full-ripe stage of individual capsules compared with a high air-temperature (30/23°C). A short day-length (10-hr) and high soil-temperature did not affect the concentrations. The concentrations showed a tendency to increase with delay of seeding time. Under natural air-temperature conditions, the concentrations in the seeds from the capsules at a higher position on the stem were higher than those at a lower position, mainly due to the air temperature during ripening. The contents per seed were affected by the environmental factors through the difference in seed weight. The concentrations increased with the increase in seed dry weight and decreased with the desiccation of seeds during maturity. Under a low air-temperature condition, the rate of decrease in sesamin concentration was low, the accumulation period was longer and the maximum concentration of sesamolin was higher, resulting in higher contents of these lignans.
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- 2009
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14. Effects of Day Length and Air Temperature on Stem Growth and Flowering in Sesame
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Tadashi Kumazaki, Yuko Yamada, Shusaku Karaya, Takashi Tokumitsu, Tatsuya Hirano, Satoko Yasumoto, Katsuta Katsuta, and Hiroyasu Michiyama
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Flowering ,Growth ,Sesame ,Short day length ,Temperature ,Plant culture ,SB1-1110 - Abstract
The effects of day length and air temperature on the growth and flowering of sesame (Sesamum indicum L.) were examined to analyze the effect of seeding date on the seed yield. Short day (10-h light/14-h darkness) treatment decreased the final stem-length relative to natural day length (14.1∼13.4-h), although it hardly affected the length of the stem-elongation period. The short-day treatment shortened the duration to the first flower and lowered the first flowering-node. It prolonged the flowering period, but decreased the flowering-node number on the main stem resulting from the slower rate of increase in nodes with flowers. Under a low day/night temperature condition (23/18ºC), the stem growth was very slow and flowering did not occur. As compared with a high temperature (30/23ºC), a low temperature (22/15ºC) during 15 days after emergence suppressed the seedling growth temporarily, but the seedlings resumed growth after the temperature treatment. The growth and flowering behavior after the treatment were unaffected by a low temperature during the seedling stage. On the other hand, a low temperature during the flowering period decreased the flowering-node number resulting from the slower rate of increase in nodes with flowers, although it prolonged the flowering period. In this study, the decrease in the flowering-node number by short days and low temperature was smaller than that by delay of seeding date as observed in our previous study. Thus, the effects of day length and air temperature were not the sole factors responsible for the effect of seeding date on the flowering-node number.
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- 2008
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15. The Effect of the Amount of Nitrogen Fertilizer on Starch Metabolism in Leaf Sheath of Japonica and Indica Rice Varieties during the Heading Period
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Tatsuya Hirano, Yoshihisa Saito, Hiroaki Ushimaru, and Hiroyasu Michiyama
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ADP-glucose pyrophosphorylase ,Debranching enzyme ,Indica rice ,Japonica rice ,Leaf sheath ,Nitrogen fertilizer ,Starch ,Starch branching enzyme ,Plant culture ,SB1-1110 - Abstract
The effects of the amount of nitrogen fertilizer on the starch metabolism of rice leaf sheath during the heading period in the japonica rice variety, cv. Nipponbare were compared with those in the indica varieties, cv. Tetep and Johna. The rice plants were grown under a low- (similar to the standard nitrogen level in paddy field) or high-nitrogen condition, and the starch content of the second leaf sheaths below the flag leaf was analyzed from the second leaf stage (growth stage 1) until 21 days after the heading (growth stage 7). The starch content of the plants grown under the high-nitrogen condition at the heading stage (growth stage 4) was lower than that under a low-nitrogen condition in all the varieties. The decrease in the activity of starch branching enzyme (SBE) was considered to be important for the repression of starch accumulation under a high-nitrogen condition. Under the high-nitrogen condition, Nipponbare accumulated more starch in the second leaf sheath than indica varieties at the heading stage. However, the phenomenon could not be accounted for by the activities of AGPase and SBE. Semi-quantitative RT-PCR analysis suggested that the lower activities of SBE in the second leaf sheath under the high-nitrogen condition may be due to, at least in part, the decrease in the expression level of RBE4.
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- 2005
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16. Influence of Day Length on Stem Growth, Flowering, Morphology of Flower Clusters, and Seed-Set in Buckwheat (Fagopyrum esculentum Moench)
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Hiroyasu Michiyama, Keiji Tsuchimoto, Ken-ichiro Tani, Tatsuya Hirano, Hisayoshi Hayashi, and Clayton Campbell
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Buckwheat ,Day length ,Eco-type ,Flower cluster ,Flowering ,Growth ,Seed-set ,Plant culture ,SB1-1110 - Abstract
The effects of day length on main stem growth, flowering, morphology of flower clusters and seed-set were examined in three buckwheat cultivars Shinanonatsusoba (summer eco-type), Miyazakizairai (autumn eco-type) and BLO 1999 (a long cluster line which usually develops DM clusters at Kade Research Ltd., Canada). Long-day treatment prolonged the stem elongation period, elevated the first flowering node, delayed the first flowering day, increased the numbers of nodes, flower clusters and flowers on the main stem, and decreased the increase rate of flowering-cluster number, the number of seeds and the seed-set ratio on the main stem. It also increased the frequency of DM clusters, the length of the flower clusters and the number of sub-flower-clusters per cluster in Shinanonatsusoba and Miyazakizairai as well as in BLO 1999. The effects of day length varied among the growth parameters and there were three types of responses to day length. The difference between the summer and autumn eco-type cultivars in the responses to day length was elucidated in four groups of parameters; (1) main stem elongation; (2) first flowering node and first flowering day; (3) increase rate of flowering-cluster number on the main stem; and (4) the number of seeds and seed-set ratio.
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- 2005
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17. Influence of Day Length before and after the Start of Anthesis on the Growth, Flowering and Seed-Setting in Common Buckwheat (Fagopyrum esculentum Moench)
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Hiroyasu Michiyama, Masamich Arikuni, Tatsuya Hirano, and Hisayoshi Hayashi
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Anthesis ,Common buckwheat ,Day length ,Fagopyrum esculentum Moench ,Growth ,Seed-setting ,Plant culture ,SB1-1110 - Abstract
The influence of day length before and after the start of anthesis on the growth, flowering process, and seed -setting of common buckwheat (Fagopyrum esculentum Moench) was investigated to determine the effect of day length at various growth stages. Exposure to long days (15 h in 2001 and 16 h in 2000) made the node position of the first flower higher, delayed the start of anthesis, decreased the rate of successive flowering, increased the number of nodes and flower clusters on the main stem, and prolonged the main stem elongation period. It increased the number of flowers per flower cluster, but decreased the seed-setting ratio and the number of seeds. The critical day length varied with the cultivar and the growth parameter. ‘Miyazakizairai’ (autumn eco-type) showed significantly greater responses to long days than ‘Shinanonatsusoba’ (summer eco-type). The day length before the start of anthesis significantly influenced on the main stem elongation and flowering process thereafter. This suggests that the day length is a more critical factor for the differentiation than the growth of the flower bud. The seed-setting ratio was influenced both by day lengths before and after the start of anthesis. The 15 h day length before the start of anthesis and around 12 h day length thereafter increased the number of double and multiple clusters in ‘Shinanonatsusoba’ and long clusters in ‘Miyazakizairai’, resulting in an increase in the number of seeds per cluster. Day length did not influence either the form or weight of seeds.
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- 2003
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18. Overlapping and non-overlapping functions of condensins I and II in neural stem cell divisions.
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Kenji Nishide and Tatsuya Hirano
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Genetics ,QH426-470 - Abstract
During development of the cerebral cortex, neural stem cells (NSCs) divide symmetrically to proliferate and asymmetrically to generate neurons. Although faithful segregation of mitotic chromosomes is critical for NSC divisions, its fundamental mechanism remains unclear. A class of evolutionarily conserved protein complexes, known as condensins, is thought to be central to chromosome assembly and segregation among eukaryotes. Here we report the first comprehensive genetic study of mammalian condensins, demonstrating that two different types of condensin complexes (condensins I and II) are both essential for NSC divisions and survival in mice. Simultaneous depletion of both condensins leads to severe defects in chromosome assembly and segregation, which in turn cause DNA damage and trigger p53-induced apoptosis. Individual depletions of condensins I and II lead to slower loss of NSCs compared to simultaneous depletion, but they display distinct mitotic defects: chromosome missegregation was observed more prominently in NSCs depleted of condensin II, whereas mitotic delays were detectable only in condensin I-depleted NSCs. Remarkably, NSCs depleted of condensin II display hyperclustering of pericentric heterochromatin and nucleoli, indicating that condensin II, but not condensin I, plays a critical role in establishing interphase nuclear architecture. Intriguingly, these defects are taken over to postmitotic neurons. Our results demonstrate that condensins I and II have overlapping and non-overlapping functions in NSCs, and also provide evolutionary insight into intricate balancing acts of the two condensin complexes.
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- 2014
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19. Gene targeting in the red alga Cyanidioschyzon merolae: single- and multi-copy insertion using authentic and chimeric selection markers.
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Takayuki Fujiwara, Mio Ohnuma, Masaki Yoshida, Tsuneyoshi Kuroiwa, and Tatsuya Hirano
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Medicine ,Science - Abstract
The unicellular red alga Cyanidioschyzon merolae is an emerging model organism for studying organelle division and inheritance: the cell is composed of an extremely simple set of organelles (one nucleus, one mitochondrion and one chloroplast), and their genomes are completely sequenced. Although a fruitful set of cytological and biochemical methods have now been developed, gene targeting techniques remain to be fully established in this organism. Thus far, only a single selection marker, URA Cm-Gs , has been available that complements the uracil-auxotrophic mutant M4. URA Cm-Gs , a chimeric URA5.3 gene of C. merolae and the related alga Galdieria sulphuraria, was originally designed to avoid gene conversion of the mutated URA5.3 allele in the parental strain M4. Although an early example of targeted gene disruption by homologous recombination was reported using this marker, the genome structure of the resultant transformants had never been fully characterized. In the current study, we showed that the use of the chimeric URA Cm-Gs selection marker caused multicopy insertion at high frequencies, accompanied by undesired recombination events at the targeted loci. The copy number of the inserted fragments was variable among the transformants, resulting in high yet uneven levels of transgene expression. In striking contrast, when the authentic URA5.3 gene (URA Cm-Cm ) was used as a selection marker, efficient single-copy insertion was observed at the targeted locus. Thus, we have successfully established a highly reliable and reproducible method for gene targeting in C. merolae. Our method will be applicable to a number of genetic manipulations in this organism, including targeted gene disruption, replacement and tagging.
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- 2013
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20. Chromosome territories meet a condensin.
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Tatsuya Hirano
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Genetics ,QH426-470 - Published
- 2012
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21. An anilinoquinazoline derivative inhibits tumor growth through interaction with hCAP-G2, a subunit of condensin II.
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Hirokazu Shiheido, Yuhei Naito, Hironobu Kimura, Hiroaki Genma, Hideaki Takashima, Mayuko Tokunaga, Takao Ono, Tatsuya Hirano, Wenlin Du, Taketo Yamada, Nobuhide Doi, Shiro Iijima, Yutaka Hattori, and Hiroshi Yanagawa
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Medicine ,Science - Abstract
We screened 46 novel anilinoquinazoline derivatives for activity to inhibit proliferation of a panel of human cancer cell lines. Among them, Q15 showed potent in vitro growth-inhibitory activity towards cancer cell lines derived from colorectal cancer, lung cancer and multiple myeloma. It also showed antitumor activity towards multiple myeloma KMS34 tumor xenografts in lcr/scid mice in vivo. Unlike the known anilinoquinazoline derivative gefitinib, Q15 did not inhibit cytokine-mediated intracellular tyrosine phosphorylation. Using our mRNA display technology, we identified hCAP-G2, a subunit of condensin II complex, which is regarded as a key player in mitotic chromosome condensation, as a Q15 binding partner. Immunofluorescence study indicated that Q15 compromises normal segregation of chromosomes, and therefore might induce apoptosis. Thus, our results indicate that hCAP-G2 is a novel therapeutic target for development of drugs active against currently intractable neoplasms.
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- 2012
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22. Robust Supply Chain Network Equilibrium Model.
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Tatsuya Hirano and Yasushi Narushima
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- 2019
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23. Synthesis and herbicidal activity of optically active cinmethylin, its enantiomer, and C3-substituted cinmethylin analogs
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Narihito Ogawa, Shoya Toyoshima, Shinya Sekikawa, Masahiro Ishijima, Kyosuke Katagiri, Chihiro Uematsu, Tatsuya Hirano, Akihito Ootaka, and Jun Suzuki
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Health, Toxicology and Mutagenesis ,Insect Science - Published
- 2023
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24. Facile High-Yield Synthesis of Ag–In–Ga–S Quaternary Quantum Dots and Coating with Gallium Sulfide Shells for Narrow Band-Edge Emission
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Taro Uematsu, Manunya Tepakidareekul, Tatsuya Hirano, Tsukasa Torimoto, and Susumu Kuwabata
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General Chemical Engineering ,Materials Chemistry ,General Chemistry - Published
- 2023
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25. Remimazolam as an Adjunct to General Anesthesia in Children: Adverse Events and Outcomes in a Large Cohort of 418 Cases
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Mason, Yoshitaka Kimoto, Tatsuya Hirano, Norifumi Kuratani, David Cavanaugh, and Keira P.
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anesthesia ,pediatrics ,remimazolam - Abstract
Remimazolam was first approved in 2020 as a general anesthetic for adults and still does not have pediatric labeling. Our study will be the first pilot program that administers remimazolam as an adjunct to a general endotracheal anesthetic in children. Between August 2020 and December 2022, electronic medical records were collected for all children who received remimazolam during anesthesia. The remimazolam dosing regimen was extrapolated from the adult package insert, with intravenous induction doses of 12 mg/kg/h administered until the desired effect was achieved. Subsequent infusions were given at a rate of 1–2 mg/kg/h, accompanied by intermittent boluses of 0.2 mg/kg, with all dosing adjustments made according to the anesthesiologist’s clinical discretion. A total of 418 children (mean 4.6 yrs, 68.7% ASA 1 and 2) underwent surgeries which averaged 81.2 min. A total of 75.2% of patients had greater than a 20% change (increase or decrease) in MAP (lowest or highest) from baseline, and 203 (49.3%) patients had greater than a 30% change (increase or decrease) in MAP (lowest or highest) from baseline. A total of 5% received ephedrine to treat unanticipated hemodynamic variability. Discharge criteria were met within an average of 13.8 min after arrival at the post-anesthesia care unit. Remimazolam may offer the benefits of rapid recovery following general endotracheal anesthesia. The risk of hemodynamic variability which necessitates and responds to ephedrine should be anticipated.
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- 2023
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26. The relationship between β-amylase and the degradation of starch temporarily stored in rice leaf blades
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Yu Sugimura, Hiroshi Fukayama, Hiroyasu Michiyama, and Tatsuya Hirano
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Organic Chemistry ,General Medicine ,Molecular Biology ,Applied Microbiology and Biotechnology ,Biochemistry ,Analytical Chemistry ,Biotechnology - Abstract
Starch is stored temporarily in the leaves during the day but degraded during the night. In this study, we investigated the relationship between diurnal changes in starch content in rice leaf blades and the mRNA levels of β-amylase genes. In addition to the known plastid-type β-amylases OsBAM2 and OsBAM3, OsBAM4, and OsBAM5 were also identified as plastid targeted proteins. In the leaf blades, starch contents, which reached its maximum at the end of day, showed two periods of marked decrease: from 18:00 to 21:00 and from 24:00 to 6:00. The expression of OsBAM2, OsBAM3, OsBAM4, and OsBAM5 was maintained at a low level from 18:00 to 21:00 but increased strongly after midnight. Furthermore, β-amylase activity gradually increased after 21:00, reaching a maximum during the early morning. These results suggest that in rice leaf blades, β-amylase plays an important role in starch degradation by being highly active from midnight to dawn.
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- 2023
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27. Cell cycle-specific phase separation regulated by protein charge blockiness
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Hiroya Yamazaki, Masatoshi Takagi, Hidetaka Kosako, Tatsuya Hirano, and Shige H. Yoshimura
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Intrinsically Disordered Proteins ,Organelles ,Ki-67 Antigen ,Cell-cycle proteins ,Cell Cycle ,Nucleolus ,Cell Biology ,Phosphorylation ,Chromosomes ,Cell Nucleolus - Abstract
Dynamic morphological changes of intracellular organelles are often regulated by protein phosphorylation or dephosphorylation. Phosphorylation modulates stereospecific interactions among structured proteins, but how it controls molecular interactions among unstructured proteins and regulates their macroscopic behaviours remains unknown. Here we determined the cell cycle-specific behaviour of Ki-67, which localizes to the nucleoli during interphase and relocates to the chromosome periphery during mitosis. Mitotic hyperphosphorylation of disordered repeat domains of Ki-67 generates alternating charge blocks in these domains and increases their propensity for liquid–liquid phase separation (LLPS). A phosphomimetic sequence and the sequences with enhanced charge blockiness underwent strong LLPS in vitro and induced chromosome periphery formation in vivo. Conversely, mitotic hyperphosphorylation of NPM1 diminished a charge block and suppressed LLPS, resulting in nucleolar dissolution. Cell cycle-specific phase separation can be modulated via phosphorylation by enhancing or reducing the charge blockiness of disordered regions, rather than by attaching phosphate groups to specific sites., タンパク質リン酸化による液-液相分離制御のしくみを解明 --細胞内非膜型オルガネラの構築原理の解明へ--. 京都大学プレスリリース. 2022-05-12.
- Published
- 2022
28. Monitoring the compaction of single DNA molecules in Xenopus egg extract in real time
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Mingxuan Sun, Hossein Amiri, Alexander B. Tong, Keishi Shintomi, Tatsuya Hirano, Carlos Bustamante, and Rebecca Heald
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Multidisciplinary - Abstract
DNA compaction is required for the condensation and resolution of chromosomes during mitosis, but the relative contribution of individual chromatin factors to this process is poorly understood. We developed a physiological, cell-free system using high-speed Xenopus egg extracts and optical tweezers to investigate real-time mitotic chromatin fiber formation and force-induced disassembly on single DNA molecules. Compared to interphase extract, which compacted DNA by ~60%, metaphase extract reduced DNA length by over 90%, reflecting differences in whole-chromosome morphology under these two conditions. Depletion of the core histone chaperone ASF1, which inhibits nucleosome assembly, decreased the final degree of metaphase fiber compaction by 29%, while depletion of linker histone H1 had a greater effect, reducing total compaction by 40%. Compared to controls, both depletions reduced the rate of compaction, led to more short periods of decompaction, and increased the speed of force-induced fiber disassembly. In contrast, depletion of condensin from metaphase extract strongly inhibited fiber assembly, resulting in transient compaction events that were rapidly reversed under high force. Altogether, these findings support a speculative model in which condensin plays the predominant role in mitotic DNA compaction, while core and linker histones act to reduce slippage during loop extrusion and modulate the degree of DNA compaction.
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- 2023
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29. Author response: Cell cycle-specific loading of condensin I is regulated by the N-terminal tail of its kleisin subunit
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Shoji Tane, Keishi Shintomi, Kazuhisa Kinoshita, Yuko Tsubota, Makoto M Yoshida, Tomoko Nishiyama, and Tatsuya Hirano
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- 2022
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30. Elasticity control of entangled chromosomes: crosstalk between condensin complexes and nucleosomes
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Tetsuya Yamamoto, Kazuhisa Kinoshita, and Tatsuya Hirano
- Abstract
Condensin-mediated loop extrusion is now considered as the main driving force of mitotic chromosome assembly. Recent experiments have shown, however, that a class of mutant condensin complexes deficient in loop extrusion can assemble chromosome-like structures inXenopusegg extracts, although these structures are somewhat different from those assembled by wild-type condensin complexes. In the absence of topoisomerase II (topo II), the mutant condensin complexes produce an unusual round-shaped structure termed a ‘bean’, which consists of a DNA-dense central core surrounded by a DNA-sparse halo. The mutant condensin complexes accumulate in the core whereas histones are more concentrated in the halo than in the core. We consider that this peculiar structure serves as a model system to study how DNA entanglements, nucleosomes, and condensin functionally crosstalk with each other. To gain insight into how the bean structure is formed, here we construct a theoretical model. Our theory predicts that the core is formed by attractive interactions between mutant condensin complexes whereas the halo is stabilized by the energy reduction through the selective accumulation of nucleosomes. The formation of the halo increases the elastic free energy due to the DNA entanglement in the core, but the latter free energy is compensated by condensin complexes that suppress the assembly of nucleosomes.
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- 2022
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31. Author Reply to Peer Reviews of Cell cycle-specific loading of condensin I is regulated by the N-terminal tail of its kleisin subunit
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Tatsuya Hirano, Shoji Tane, Keishi Shintomi, Kazuhisa Kinoshita, Yuko Tsubota, Tomoko Nishiyama, and Makoto M Yoshida
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- 2022
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32. Synthesis and herbicidal activity of 3-substituted toxoflavin analogs
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Tatsuya Hirano, Narihito Ogawa, Jun Suzuki, and Ryoya Imaizumi
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Toxoflavin ,chemistry.chemical_compound ,biology ,Stereochemistry ,Chenopodium ,Chemistry ,Brief Report ,Health, Toxicology and Mutagenesis ,Insect Science ,Aromaticity ,Echinochloa ,biology.organism_classification ,Field conditions - Abstract
We investigated the synthesis and herbicidal activity of 23 toxoflavin analogs, 1a–w, in which aromatic rings (R) were introduced into the C-3 position. In paddy field conditions, 1k (R=2-CF(3)–C(6)H(4)) and 1w (R=2-thienyl) showed excellent herbicidal activity. Under upland field conditions, we found that toxoflavin analogs 1a (R=C(6)H(5)), 1n (R=2-CH(3)O–C(6)H(4)), and 1p (R=4-CH(3)O–C(6)H(4)) exhibited wide herbicidal spectrum against Echinochloa crus-galli (L) var. crus-galli (ECHCG), Chenopodium album, and Amaranthus viridis (AMAVI). The analog with the 2-fluoro group on benzene ring 1b also showed high herbicidal activity against both ECHCG and AMAVI.
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- 2021
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33. Author response: Molecular dissection of condensin II-mediated chromosome assembly using in vitro assays
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Makoto M Yoshida, Kazuhisa Kinoshita, Yuuki Aizawa, Shoji Tane, Daisuke Yamashita, Keishi Shintomi, and Tatsuya Hirano
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- 2022
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34. Molecular dissection of condensin II-mediated chromosome assembly using in vitro assays
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Tatsuya Hirano, Kazuhisa Kinoshita, Daisuke Yamashita, Keishi Shintomi, Yuuki Aizawa, Makoto Yoshida, and Shoji Tane
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Adenosine Triphosphatases ,DNA-Binding Proteins ,Protein Subunits ,General Immunology and Microbiology ,Multiprotein Complexes ,General Neuroscience ,Animals ,Mitosis ,General Medicine ,macromolecular substances ,Chromosomes ,General Biochemistry, Genetics and Molecular Biology - Abstract
In vertebrates, condensin I and condensin II cooperate to assemble rod-shaped chromosomes during mitosis. Although the mechanism of action and regulation of condensin I have been studied extensively, our corresponding knowledge of condensin II remains very limited. By introducing recombinant condensin II complexes into Xenopus egg extracts, we dissect the roles of its individual subunits in chromosome assembly. We find that one of two HEAT subunits, CAP-D3, plays a crucial role in condensin II-mediated assembly of chromosome axes, whereas the other HEAT subunit, CAP-G2, has a very strong negative impact on this process. The structural maintenance of chromosomes ATPase and the basic amino acid clusters of the kleisin subunit CAP-H2 are essential for this process. Deletion of the C-terminal tail of CAP-D3 increases the ability of condensin II to assemble chromosomes and further exposes a hidden function of CAP-G2 in the lateral compaction of chromosomes. Taken together, our results uncover a multilayered regulatory mechanism unique to condensin II, and provide profound implications for the evolution of condensin II.
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- 2022
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35. Population pharmacokinetics of tacrolimus in umbilical cord blood transplant patients focusing on the variation in red blood cell counts
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Takayuki Ishikawa, Moena Miyasaka, Saki Yoshida, Nobuyuki Sugioka, Kei Irie, Tatsuya Hirano, Nobuyuki Muroi, Keizo Fukushima, Yoshimitsu Shimomura, Tohru Hashida, Motozumi Ando, Hiroaki Ikesue, and Ayumi Fujimoto
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,Population ,Urology ,030226 pharmacology & pharmacy ,Umbilical cord ,Tacrolimus ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,education ,Aged ,Whole blood ,Pharmacology ,education.field_of_study ,medicine.diagnostic_test ,business.industry ,Umbilical Cord Blood Transplantation ,Middle Aged ,Total body irradiation ,Transplantation ,Leukemia, Myeloid, Acute ,stomatognathic diseases ,Red blood cell ,medicine.anatomical_structure ,Therapeutic drug monitoring ,Erythrocyte Count ,Female ,Cord Blood Stem Cell Transplantation ,Drug Monitoring ,business ,Immunosuppressive Agents - Abstract
What is known and objective The distribution of tacrolimus (TAC), an immunosuppressant used during cord blood transplantation (CBT)-one of the haematopoietic stem cell transplantations, to red blood cell (RBC) is approximately 90% in whole blood. In CBT patients, the total RBC count shows dramatic fluctuation due to conditioning before transplantation, including anticancer agents and total body irradiation, as well as RBC transfusions during the treatment period. Therefore, the amount of TAC in whole blood may show wide variation. However, therapeutic drug monitoring (TDM) of TAC has been performed based on the whole blood concentration. In this study, to contribute to TDM of TAC in CBT, we performed the population pharmacokinetic (PPK) analysis of TAC in 56 CBT patients and investigated the factors that affected the concentration of TAC, focusing the variation of RBC count. Method A one-compartment model was applied to the observed whole blood TAC concentrations, and a PPK analysis was conducted with a non-linear mixed effect model. Results and discussion Our final PPK model indicated good robustness and accuracy. In addition, haemoglobin (Hb) level was an influential covariate on Vd, which was expressed as Vd(L) = 91.4 × (Hb/8.2)(-1.07) . What is new and conclusion In this study, our results showed the necessity for the Hb level monitoring during TDM of TAC in CBT patients and provided useful information for improving TDM strategy of TAC.
- Published
- 2020
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36. Risk Factors for Skin Toxicities Associated with Bendamustine-Based Chemotherapy in Patients with Non-Hodgkin Lymphoma
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Kenta Akiba, Tatsuya Hirano, Nobuyuki Muroi, Keiko Hosohata, Yuki Yamaguchi, Mayako Uchida, Tsutomu Nakamura, Yasuhiro Mori, Yoshimitsu Shimomura, Moena Miyasaka, Aoi Takano, Hiroaki Ikesue, Tohru Hashida, Takayuki Ishikawa, and Nami Maegawa
- Subjects
Adult ,Male ,0301 basic medicine ,Bendamustine ,Oncology ,medicine.medical_specialty ,medicine.medical_treatment ,Pharmaceutical Science ,Risk Assessment ,Drug Administration Schedule ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Bendamustine Hydrochloride ,Humans ,Risk factor ,Aged ,Retrospective Studies ,Aged, 80 and over ,Pharmacology ,Chemotherapy ,Hematology ,Dose-Response Relationship, Drug ,business.industry ,Incidence ,Lymphoma, Non-Hodgkin ,Medical record ,General Medicine ,Odds ratio ,Middle Aged ,medicine.disease ,Lymphoma ,Logistic Models ,030104 developmental biology ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,Female ,Rituximab ,Drug Eruptions ,Neoplasm Recurrence, Local ,business ,medicine.drug - Abstract
Bendamustine plays an especially important role as a treatment for non-Hodgkin lymphoma (NHL). However, patients administered bendamustine alone or in combination with rituximab (BR) may experience drug-associated skin toxicities that can profoundly impact their health-related QOL through both physical discomfort and psychological distress. Moreover, worsening skin symptoms may lead to dose reduction or termination in the management of cancer chemotherapy. We retrospectively investigated patient backgrounds and pretreatment characteristics from medical records of NHL patients treated with bendamustine alone or BR therapy and identified predictive factors for skin toxicities at the start of chemotherapy. Patients were eligible for the study if they were 20 years older, diagnosed with NHL, and received bendamustine alone or BR therapy at the Department of Hematology, Kobe City Medical Center General Hospital, between April 1, 2011, and March 31, 2018. This study included 95 patients with newly diagnosed or refractory or relapsed NHL. Multivariate stepwise logistic regression analysis with backward selection revealed that baseline non-prior chemotherapy (odds ratio (OR), 15.72; 95% confidence interval (CI), 4.24-83.13, p < 0.001) was a significant factor influencing the occurrence of skin toxicity. Our results demonstrated that non-prior chemotherapy was a significant risk factor for skin toxicities in patients with NHL receiving bendamustine alone or BR therapy. No patient experience serious side effects of grade 3 or higher and that bendamustine is very useful as a first-line treatment.
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- 2020
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37. Intranodal Administration of Neoantigen Peptide-loaded Dendritic Cell Vaccine Elicits Epitope-specific T Cell Responses and Clinical Effects in a Patient with Chemorefractory Ovarian Cancer with Malignant Ascites
- Author
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Sachiko Yoshimura, Takafumi Morisaki, Tetsuro Hikichi, Takashi Morisaki, Makoto Kubo, Yusuke Nakamura, Tatsuya Hirano, Kazuma Kiyotani, and Hideya Onishi
- Subjects
0301 basic medicine ,Enzyme-Linked Immunospot Assay ,T-Lymphocytes ,T cell ,medicine.medical_treatment ,Immunology ,Epitopes, T-Lymphocyte ,Cancer Vaccines ,Epitope ,Neoantigen Peptide ,03 medical and health sciences ,Lymphocytes, Tumor-Infiltrating ,0302 clinical medicine ,Antigens, Neoplasm ,Ascites ,Humans ,Medicine ,Aged ,Ovarian Neoplasms ,Antigen Presentation ,integumentary system ,business.industry ,Vaccination ,Dendritic Cells ,General Medicine ,Immunotherapy ,medicine.disease ,Tumor Burden ,030104 developmental biology ,medicine.anatomical_structure ,Dendritic cell vaccine ,Drug Resistance, Neoplasm ,CA-125 Antigen ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Sentinel Lymph Node ,medicine.symptom ,Peptides ,business ,Ovarian cancer - Abstract
Chemorefractory ovarian cancer has limited therapeutic options. Hence, new types of treatment including neoantigen-specific immunotherapy need to be investigated. Neoantigens represent promising targets for personalized cancer immunotherapy. We here describe the clinical and immunological effects of a neoantigen peptide-loaded DC-based immunotherapy in a patient with recurrent and chemoresistant ovarian cancer. A 71-year-old female patient with chemorefractory ovarian cancer and malignant ascites received intranodal vaccination of DCs loaded with four neoantigen peptides that were predicted by our immunogenomic pipeline. Following four rounds of vaccinations with this therapy, CA-125 levels were remarkably declined and tumor cells in the ascites were also decreased. Concordantly, the tumor-related symptoms such as respiratory discomfort improved without any adverse reactions. The reactivity against one HLA-A2402-restricted neoantigen peptide derived from a mutated PPM1 F protein was detected in lymphocytes from peripheral blood by IFN-γ ELISPOT assay. Furthermore, the neoantigen (PPM1 F mutant)-specific TCRs were detected in the tumor-infiltrating T lymphocytes post-vaccination. Our results showed that vaccination with intranodal injection of neoantigen peptide-loaded DCs may have clinical and immunological impacts on cancer treatment.
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- 2020
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38. Biological soil disinfestation compatible with renewable energy production for sustainable agriculture
- Author
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Shaohua Chen, Tatsuya Hirano, Yoshiaki Hayashi, and Hiroto Tamura
- Subjects
Health, Toxicology and Mutagenesis ,Insect Science - Abstract
Biological soil disinfestation (BSD) is biotechnology to control soil-borne plant pathogens based on the anaerobic-reducing environment in soil and the functions of indigenous microbes. A new sustainable agricultural technology, the GET system, which produces and recovers methane as renewable energy from paddy fields, has a structure and principles similar to those of BSD technology. To confirm the potential of the GET system as BSD technology, the microbial community structures in the GET system were analyzed using next-generation sequencing. Thirty-four phyla were detected: 31 bacterial and 3 archaeal.
- Published
- 2022
39. A loop extrusion–independent mechanism contributes to condensin I–mediated chromosome shaping
- Author
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Kazuhisa Kinoshita, Yuko Tsubota, Shoji Tane, Yuuki Aizawa, Ryota Sakata, Kozo Takeuchi, Keishi Shintomi, Tomoko Nishiyama, and Tatsuya Hirano
- Subjects
Adenosine Triphosphatases ,Chromosomal Proteins, Non-Histone ,Xenopus ,Amino Acid Motifs ,macromolecular substances ,Cell Biology ,Chromosomes ,Protein Structure, Secondary ,DNA-Binding Proteins ,Mice ,Structure-Activity Relationship ,DNA Topoisomerases, Type II ,Phenotype ,Multiprotein Complexes ,Mutation ,Animals ,Humans - Abstract
Condensin I is a five-subunit protein complex that is central to mitotic chromosome assembly in eukaryotic cells. Despite recent progress, its molecular mechanisms of action remain to be fully elucidated. By using Xenopus egg extracts as a functional assay, we find that condensin I complexes harboring mutations in its kleisin subunit CAP-H produce chromosomes with confined axes in the presence of topoisomerase IIα (topo IIα) and highly compact structures (termed “beans”) with condensin-positive central cores in its absence. The bean phenotype depends on the SMC ATPase cycle and can be reversed by subsequent addition of topo IIα. The HEAT repeat subunit CAP-D2, but not CAP-G, is essential for the bean formation. Notably, loop extrusion activities of the mutant complexes cannot explain the chromosomal defects they exhibit in Xenopus egg extracts, implying that a loop extrusion–independent mechanism contributes to condensin I–mediated chromosome assembly and shaping. We provide evidence that condensin–condensin interactions underlie these processes.
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- 2022
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40. Modeling of plain knitted fabrics for their deformation control.
- Author
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Takahiro Wada, Shinichi Hirai, Tatsuya Hirano, and Sadao Kawamura
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- 1997
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41. Robust Supply Chain Network Equilibrium Model
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Yasushi Narushima and Tatsuya Hirano
- Subjects
050210 logistics & transportation ,021103 operations research ,Supply chain management ,Mathematical model ,business.industry ,Supply chain ,05 social sciences ,0211 other engineering and technologies ,Robust optimization ,Transportation ,02 engineering and technology ,Competition (economics) ,0502 economics and business ,Supply chain network ,business ,Risk management ,Industrial organization ,Civil and Structural Engineering - Abstract
An important and often researched area of management science is mathematical modeling of a supply chain. Competitive situations can occur in supply chains owing to the involvement of multiple decision makers (players) that independently decide their behaviors. To investigate competitive supply chain networks, a supply chain network equilibrium (SCNE) model was proposed. Recently, particular attention has been paid to risk management of a supply chain. In equilibrium models, it is vital to consider players’ decisions and interdependence relations. Thus, we consider competitive supply chain networks with uncertainties in the other players’ strategies. In the proposed model, each player cannot know exactly the other players’ strategies, and they decide their strategy using the minimax principle (that is, assuming the worst case). We call it the robust SCNE model. We formulate the robust SCNE model as a variational inequality problem (VIP) in which the set associated with the VIP is constructed by second-order cone constraints. We show the existence and uniqueness of the equilibrium under mild assumptions. In addition, we give, in a special case, some relations between players’ strategies in the equilibrium and magnitudes of uncertainties. Finally, some numerical results are provided.
- Published
- 2019
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42. Overexpression of the laccase gene, lcc1, in Lentinula edodes using the pChG vector
- Author
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Toshitsugu Sato, Naoyuki Suzuki, Masayoshi Naito, Tatsuya Hirano, Aika Minami, Yuumi Suzuki, and Kaori Yaegashi
- Subjects
0106 biological sciences ,Laccase ,chemistry.chemical_classification ,0303 health sciences ,Strain (chemistry) ,Promoter ,Dehydrogenase ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,030308 mycology & parasitology ,law.invention ,03 medical and health sciences ,Enzyme ,Lentinula ,Biochemistry ,chemistry ,law ,Recombinant DNA ,Gene ,Ecology, Evolution, Behavior and Systematics - Abstract
Lentinula edodes secretes laccase (Lcc: EC 1.10.3.2), an industrially useful enzyme. In this study, we introduced and expressed the L. edodes Lcc gene, lcc1, driven by L. edodes glyceraldehyde-3-phosphate dehydrogenase gene promoter into L. edodes. The resulting transformants showed 2-fold Lcc activity than that of the host strain, and expression of the recombinant lcc1 was confirmed by RT-PCR.
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- 2019
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43. Influence of J c( B , T ) Characteristics on the Pulsed Field Magnetization of REBaCuO Disk Bulks
- Author
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Keita Takahashi, Fumiya Shimoyashiki, Hiroyuki Fujishiro, Mark D. Ainslie, Tatsuya Hirano, and Tomoyuki Naito
- Subjects
Physics ,Computer simulation ,Condensed matter physics ,Field (physics) ,Numerical models ,Superconducting magnet ,Condensed Matter Physics ,01 natural sciences ,Magnetic flux ,Electronic, Optical and Magnetic Materials ,Magnetic field ,Magnetization ,Peak effect ,0103 physical sciences ,Electrical and Electronic Engineering ,010306 general physics - Abstract
The trapped field properties during pulsed-field magnetization (PFM) have been investigated numerically using three different assumptions relating to the J c( B , T ) characteristics (Jirsa, Kim, and Bean models) and compared with experimental results. The trapped field properties using the Jirsa model with the so-called “peak effect,” in which a realistic J c( B , T ) is assumed, rather than the Kim model, result in a more realistic numerical simulation. The trapped field properties using a Kim model with a monotonically decreasing J c( B ) also show similar results to those using the Jirsa model. The trapped field properties using a Bean model, for which J c is independent of magnetic field, are not necessarily enhanced because of a larger temperature rise. The numerical results suggest it is necessary to fabricate REBaCuO bulks with J c( B , T ) characteristics with moderate magnetic field and temperature dependences to enhance the trapped field by PFM.
- Published
- 2019
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44. Significant Improvement of Copper Dry Etching Property of a High-Pressure Hydrogen-Based Plasma by Nitrogen Gas Addition
- Author
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Kiyoshi Yasutake, Hiromasa Ohmi, Jumpei Sato, Tatsuya Hirano, Hiroaki Kakiuchi, and Yoshiki Shirasu
- Subjects
Chemical substance ,Materials science ,Hydrogen ,General Chemical Engineering ,Analytical chemistry ,chemistry.chemical_element ,General Chemistry ,Plasma ,Copper ,Article ,law.invention ,lcsh:Chemistry ,lcsh:QD1-999 ,chemistry ,Magazine ,law ,Torr ,Dry etching ,Science, technology and society - Abstract
The characteristics of copper (Cu) isotropic dry etching using a hydrogen-based plasma generated at 13.3 kPa (100 Torr) were improved dramatically by simply introducing a moderate amount of N2 gas into the process atmosphere. A maximum Cu etch rate of 2.4 μm/min was obtained by nitrogen addition at a H2 mixture ratio (CH2) of 0.9 and an input power of 70 W. The etch rate for the optimally N2-added plasma was 8 times higher than that for the pure H2 plasma. The Cu etch rate increased with increasing input power. The maximum etch rate reached 3.1 μm/min at an input power of 100 W and a CH2 of 0.9. The surface roughness of the etched copper decreased as a result of optimum N2 addition. Furthermore, N2 addition also improved the etch selectivity between Cu and SiO2 such that the selectivity ratio reached 190. Finally, selective etching of a trench-patterned Si wafer with an electroplated Cu layer was demonstrated.
- Published
- 2019
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45. Efficacy of Intranodal Neoantigen Peptide-pulsed Dendritic Cell Vaccine Monotherapy in Patients With Advanced Solid Tumors: A Retrospective Analysis
- Author
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Makoto Kubo, Ario Takeuchi, Keisuke Monji, Hiroto Tanaka, Yusuke Nakamura, Takafumi Morisaki, Masayo Umebayashi, Kenta Tsujimura, Takashi Morisaki, Shinji Morisaki, Masatoshi Eto, Poh Yin Yew, Hideya Onishi, Norihiro Koya, Sachiko Yoshimura, Tatsuya Hirano, Kazuma Kiyotani, and Shinichiro Nakagawa
- Subjects
Adult ,Male ,Cancer Research ,Gene mutation ,Cancer Vaccines ,Neoantigen Peptide ,Epitope ,Immune tolerance ,Immune system ,Antigen ,Antigens, Neoplasm ,Neoplasms ,Medicine ,Humans ,Aged ,Retrospective Studies ,integumentary system ,business.industry ,ELISPOT ,General Medicine ,Dendritic Cells ,Middle Aged ,Treatment Outcome ,Oncology ,Immunology ,Female ,Cancer vaccine ,Immunotherapy ,business ,Peptides - Abstract
Background/aim Neoantigens are tumor-specific antigens that emerge due to gene mutations in tumor cells, and are highly antigenic epitopes that escape central immune tolerance in the thymus, making cancer vaccine therapy a desirable option. Patients and methods Tumor neoantigens were predicted in 17 patients with advanced cancer. They were resistant to the standard treatment regime, and their synthetic peptides were pulsed to the patient's monocyte-derived dendritic cells (DCs), and administered to the patient's lymph nodes via ultrasound. Results Some patients showed sustained tumor shrinkage after this treatment, while some did not respond, showing no ELISpot reaction. Although the number of mutations and the predicted neoantigen epitopes differed between patients, the clinical effect depended more on the presence or absence of an immune response after vaccination rather than the number of neoantigens. Conclusion Intranodal neoantigen peptide-pulsed DC vaccine administration therapy has clinical and immunological efficacy and safety.
- Published
- 2021
46. Usefulness of several factors and clinical scoring models in preoperative diagnosis of complicated appendicitis
- Author
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Atsushi Abe, Kiyohisa Hiraka, Kenji Fujiwara, Toshihiro Masatsugu, Masayuki Sada, and Tatsuya Hirano
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Male ,Epidemiology ,Computed tomography ,Biochemistry ,Body Temperature ,Diagnostic Radiology ,Fats ,0302 clinical medicine ,Medicine and Health Sciences ,Abscess ,Child ,Tomography ,Immune Response ,Gangrene ,Aged, 80 and over ,Multidisciplinary ,medicine.diagnostic_test ,Radiology and Imaging ,Age Factors ,Middle Aged ,C-Reactive Proteins ,Lipids ,Appendix ,medicine.anatomical_structure ,C-Reactive Protein ,030220 oncology & carcinogenesis ,Area Under Curve ,Medicine ,030211 gastroenterology & hepatology ,Female ,Radiology ,Research Article ,Adult ,medicine.medical_specialty ,Adolescent ,Imaging Techniques ,Science ,Perforation (oil well) ,Immunology ,Neuroimaging ,Surgical and Invasive Medical Procedures ,Gastroenterology and Hepatology ,Research and Analysis Methods ,03 medical and health sciences ,Young Adult ,Signs and Symptoms ,Diagnostic Medicine ,medicine ,Humans ,Aged ,Retrospective Studies ,Inflammation ,business.industry ,Biology and Life Sciences ,Proteins ,Complicated appendicitis ,medicine.disease ,Appendicitis ,Computed Axial Tomography ,Abscesses ,ROC Curve ,Medical Risk Factors ,Mann–Whitney U test ,Clinical Medicine ,business ,Tomography, X-Ray Computed ,Neuroscience - Abstract
BackgroundThe preoperative distinction between uncomplicated and complicated appendicitis is important to determine the appropriate treatments, such as antibiotics, surgery, or interval appendectomy. Computed tomography (CT) plays an important role; however, combining clinical and imaging factors may make preoperative evaluation more reliable. This study evaluated and analyzed cases and the usefulness of several preoperative factors and clinical scoring models to detect complicated appendicitis.MethodsA total of 203 patients preoperatively diagnosed with acute appendicitis at our facility were included. Complicated appendicitis was defined as appendicitis with gangrene, perforated appendix, and/or abscess formation. Preoperative factors were collected from published clinical scoring models; patient information, symptoms, signs, results of laboratory tests, and findings of CT. Factors were analyzed using a chi-squared test and the Mann-Whitney U test.ResultsThe preoperative factors were compared between 151 uncomplicated and 52 complicated appendicitis patients. The significant factors were age ≥40, duration of symptoms >24 hours, body temperature ≥37.3°C, high levels of CRP, findings in CT scan (appendix diameter ≥10 mm, stranding of the adjacent fat, presence of fluid collection, and suspicion of abscess or perforation). We also evaluated the usefulness of clinical scoring models for the detection of complicated appendicitis and found the Appendicitis Inflammatory Response score and two prediction models (Atema score and Imaoka score) showed significance (p< 0.05). High serum CRP level was significantly associated with complicated appendicitis (p< 0.001), and the predicted existence rates of complicated appendicitis were 52.7% for serum CRP level ≥50mg/L, 74.4% for ≥100mg/L, and 82.6% for ≥150mg/L.ConclusionThe results demonstrated several preoperative factors and clinical scoring models to increase suspicion of complicated appendicitis. Specifically, high serum levels of CRP may be a useful factor in predicting complicated appendicitis prior to surgery when supported by clinical findings and imaging; however, further research is needed.
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- 2021
47. Molecular dissection of condensin IImediated chromosome assembly using in vitro assays.
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Yoshida, Makoto M., Kazuhisa Kinoshita, Yuuki Aizawa, Shoji Tane, Daisuke Yamashita, Keishi Shintomi, and Tatsuya Hirano
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- 2022
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48. Pulsed-field magnetisation of Y-Ba-Cu-O bulk superconductors fabricated by the infiltration growth technique
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Yunhua Shi, David A. Cardwell, T Kamada, Devendra Kumar Namburi, Hiroyuki Fujishiro, Keita Takahashi, Tatsuya Hirano, Mark D. Ainslie, John H. Durrell, Namburi, Devendra K [0000-0003-3219-2708], Takahashi, K [0000-0002-8278-2688], Hirano, T [0000-0003-1658-914X], Fujishiro, H [0000-0003-1483-835X], Shi, Y-H [0000-0003-4240-5543], Cardwell, D A [0000-0002-2020-2131], Durrell, J H [0000-0003-0712-3102], Ainslie, M D [0000-0003-0466-3680], Apollo - University of Cambridge Repository, and Namburi, DK [0000-0003-3219-2708]
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010302 applied physics ,Superconductivity ,Paper ,Materials science ,Metals and Alloys ,Analytical chemistry ,bulk YBCO ,Condensed Matter Physics ,01 natural sciences ,Magnetic field ,pulsed-field magnetisation ,Magnetization ,Condensed Matter::Materials Science ,trapped field ,Condensed Matter::Superconductivity ,infiltration and growth ,0103 physical sciences ,flux-pinning strength ,Materials Chemistry ,Ceramics and Composites ,Electrical and Electronic Engineering ,010306 general physics ,Current density ,homogeneous and dense microstructure - Abstract
Funder: King Abdulaziz City for Science and Technology; doi: http://dx.doi.org/10.13039/501100004919, Bulk high temperature superconductors based on the rare-earth copper oxides can be used effectively as trapped field magnets capable of generating large magnetic fields. The top-seeded infiltration growth (TSIG) processing technique can provide a more homogeneous microstructure and therefore more uniform superconducting properties than samples grown using conventional melt growth processes. In the present investigation, the properties of bulk, single grain superconductors processed by TSIG and magnetised by the pulsed-field magnetisation technique using a copper-wound solenoid have been studied. A trapped field of ∼3 T has been achieved in a 2-step buffer-assisted TSIG-processed Y-Ba-Cu-O (YBCO) sample at 40 K by magnetising the bulk superconductor completely via a single-pulse magnetisation process. Samples were also subjected to pulsed-field magnetisation at 65 K and by conventional field-cooled magnetisation at 77 K for comparison. Good correlation was observed between the microstructures, critical current densities and trapped field performance of bulk samples fabricated by TSIG and magnetised by pulsed-field and field-cooled magnetisation. The homogeneous distribution of Y2BaCuO5 inclusions within the microstructure of bulk YBCO samples fabricated by the 2-step buffer-assisted TSIG process reduces inhomogeneous flux penetration into the interior of the sample. This, in turn, results in a lower temperature rise of the bulk superconductor during the pulsed-field magnetisation process and a more effective and reliable magnetisation process.
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- 2020
49. Numerical simulation of a hybrid trapped field magnet lens (HTFML) magnetized by pulsed fields
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Sora Namba, Motoki Shinden, Mark D. Ainslie, Tatsuya Hirano, Hiroyuki Fujishiro, Tomoyuki Naito, Ainslie, Mark [0000-0003-0466-3680], and Apollo - University of Cambridge Repository
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Paper ,History ,Materials science ,Field (physics) ,Computer simulation ,business.industry ,Computer Science Applications ,Education ,law.invention ,Lens (optics) ,Optics ,law ,Magnet ,business ,51 Physical Sciences - Abstract
The hybrid trapped field magnet lens (HTFML) is a promising device that is able to concentrate a magnetic field higher than an applied background field continuously, even after removing a background field, which was conceptually proposed by the authors in 2018. We have numerically investigated the HTFML performance, consisting of a REBaCuO cylindrical magnetic lens and REBaCuO trapped field magnet (TFM) cylinder, magnetized by pulsed fields. Single magnetic pulses were applied ranging from B app = 1.5 T to 5.0 T at the operating temperature of T s = 30, 40 and 50 K, and the performance was compared with that of the single REBaCuO TFM cylinder. The HTFML effect was clearly confirmed for the lower B app values. However, for the higher B app values, the trapped field in the magnetic lens bore was nearly equal to or slightly lower than that for the single TFM cylinder because of a weakened lens effect due to magnetic flux penetration into the lens. A temperature rise in the REBaCuO magnetic lens and TFM cylinder was also observed. These results strongly suggest that lowering the temperature of the REBaCuO magnetic lens could enhance the HTFML effect even for higher B app., Adaptable and Seamless Technology Transfer Program through Target-driven R&D (A-STEP), Japan Science and Technology Agency (JST), Grant No. VP30218088419 JSPS KAKENHI Grant No.19K05240
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- 2020
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50. Effect of gallbladder polyp size on the prediction and detection of gallbladder cancer
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Toshihiro Masatsugu, Tatsuya Hirano, Masayuki Sada, Kenji Fujiwara, and Atsushi Abe
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medicine.medical_specialty ,Adenoma ,Gallbladder Diseases ,Malignancy ,Gastroenterology ,Lesion ,03 medical and health sciences ,0302 clinical medicine ,Polyps ,Internal medicine ,Gallbladder polyp ,otorhinolaryngologic diseases ,medicine ,Humans ,Gallbladder cancer ,neoplasms ,Retrospective Studies ,Ultrasonography ,Sessile Lesion ,business.industry ,Gallbladder ,pathological conditions, signs and symptoms ,Hepatology ,medicine.disease ,digestive system diseases ,surgical procedures, operative ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Case-Control Studies ,030211 gastroenterology & hepatology ,Surgery ,Gallbladder Neoplasms ,medicine.symptom ,business - Abstract
Gallbladder polyps are relatively common. Although most gallbladder polyps are benign, some are malignant. Current guidelines state that malignancy should be suspected for polyps ≥ 10 mm in diameter. We clarified the cancer detection rates in accordance with the size distribution of gallbladder polyps, and evaluated the effectiveness of the reported risk factors in predicting malignancy. In this retrospective case–control study, our institutional database was searched to identify patients who underwent laparoscopic cholecystectomy for benign or malignant gallbladder polyps at Sada Hospital, Japan. The chi-squared test was used to analyze the risk factors for malignancy. There were 227 protruding gallbladder lesions. The 206 benign polyps had a diameter of 2–21 mm, while the 21 malignant polyps were 7–60 mm. The cancer detection rates were 16.4% for lesions ≥ 10 mm, 55.9% for lesions ≥ 15 mm, and 94.1% for lesions ≥ 20 mm. Of the benign lesions, cholesterol polyps were the most frequent (50–100%) in all size ranges, even in large lesions (≥ 15 mm). The sessile lesion morphology was significantly more frequent in malignant (60%) than benign lesions (3.4%, p
- Published
- 2020
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