12 results on '"Tarpey R"'
Search Results
2. The long-term effects of silvicultural thinning and partial cutting on soil compaction in red pine (Pinus resinosa Ait.) and northern hardwood stands in the northern Great Lakes Region of the United States
- Author
-
Tarpey, R A, primary, Jurgensen, M F, additional, Palik, B J, additional, and Kolka, R K, additional
- Published
- 2008
- Full Text
- View/download PDF
3. The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis
- Author
-
Du, H, primary, Tarpey, R, additional, and Babitzke, P, additional
- Published
- 1997
- Full Text
- View/download PDF
4. Differential recruitment of coactivator RIP140 by Ah and estrogen receptors. Absence of a role for LXXLL motifs.
- Author
-
Kumar, M B, Tarpey, R W, and Perdew, G H
- Abstract
The Ah receptor (AhR), a soluble cytosolic protein, mediates most of the toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and related environmental contaminants. The mechanism of ligand-mediated AhR activation has been, in part, elucidated. The sequence of events following the binding of the AhR/AhR nuclear translocator protein (ARNT) heterodimer to dioxin response elements has yet to be completely understood. The role of coactivator, RIP140, in the modulation of transcriptional activity of AhR/ARNT heterodimer was examined. RIP140 enhanced TCDD-mediated, dioxin response element-driven reporter gene activity in three cell lines. Co-immunoprecipitation and co-localization assays revealed that RIP140 interacted with AhR, but not with ARNT, both in vitro and in cells. Mapping of the interaction sites revealed that RIP140 was recruited by the AhR transactivation domain via the Q-rich subdomain. The RIP140 domain that interacts with the AhR was mapped to a location between amino acid residues 154 and 350, which is distinct from those involved in estrogen receptor binding. The signature motif, LXXLL, which is responsible for binding of several coactivators to nuclear receptors, is not required for RIP140 binding to AhR. These results demonstrate that the AhR recruits coactivators that are capable of enhancing transcription and, thus, the AhR may compete with steroid receptors for a common coactivator pool. In addition, the data suggest that there are distinct motif(s) for the recruitment of RIP140 to AhR and possibly other non-steroid receptors/transcription factors.
- Published
- 1999
5. Exploring therapy transport from implantable medical devices using experimentally informed computational methods.
- Author
-
Trask L, Ward NA, Tarpey R, Beatty R, Wallace E, O'Dwyer J, Ronan W, Duffy GP, and Dolan EB
- Subjects
- Humans, Prostheses and Implants, Foreign-Body Reaction, Diffusion, Insulin administration & dosage, Insulin chemistry
- Abstract
Implantable medical devices that can facilitate therapy transport to localized sites are being developed for a number of diverse applications, including the treatment of diseases such as diabetes and cancer, and tissue regeneration after myocardial infraction. These implants can take the form of an encapsulation device which encases therapy in the form of drugs, proteins, cells, and bioactive agents, in semi-permeable membranes. Such implants have shown some success but the nature of these devices pose a barrier to the diffusion of vital factors, which is further exacerbated upon implantation due to the foreign body response (FBR). The FBR results in the formation of a dense hypo-permeable fibrous capsule around devices and is a leading cause of failure in many implantable technologies. One potential method for overcoming this diffusion barrier and enhancing therapy transport from the device is to incorporate local fluid flow. In this work, we used experimentally informed inputs to characterize the change in the fibrous capsule over time and quantified how this impacts therapy release from a device using computational methods. Insulin was used as a representative therapy as encapsulation devices for Type 1 diabetes are among the most-well characterised. We then explored how local fluid flow may be used to counteract these diffusion barriers, as well as how a more practical pulsatile flow regimen could be implemented to achieve similar results to continuous fluid flow. The generated model is a versatile tool toward informing future device design through its ability to capture the expected decrease in insulin release over time resulting from the FBR and investigate potential methods to overcome these effects.
- Published
- 2024
- Full Text
- View/download PDF
6. Intermittent actuation attenuates fibrotic behaviour of myofibroblasts.
- Author
-
Ward NA, Hanley S, Tarpey R, Schreiber LHJ, O'Dwyer J, Roche ET, Duffy GP, and Dolan EB
- Subjects
- Humans, Myofibroblasts metabolism, Anti-Inflammatory Agents, Collagen pharmacology, Collagen metabolism, Fibrosis, Foreign-Body Reaction pathology, Foreign Bodies pathology
- Abstract
The foreign body response (FBR) to implanted materials culminates in the deposition of a hypo-permeable, collagen rich fibrotic capsule by myofibroblast cells at the implant site. The fibrotic capsule can be deleterious to the function of some medical implants as it can isolate the implant from the host environment. Modulation of fibrotic capsule formation has been achieved using intermittent actuation of drug delivery implants, however the mechanisms underlying this response are not well understood. Here, we use analytical, computational, and in vitro models to understand the response of human myofibroblasts (WPMY-1 stromal cell line) to intermittent actuation using soft robotics and investigate how actuation can alter the secretion of collagen and pro/anti-inflammatory cytokines by these cells. Our findings suggest that there is a mechanical loading threshold that can modulate the fibrotic behaviour of myofibroblasts, by reducing the secretion of soluble collagen, transforming growth factor beta-1 and interleukin 1-beta, and upregulating the anti-inflammatory interleukin-10. By improving our understanding of how cells involved in the FBR respond to mechanical actuation, we can harness this technology to improve functional outcomes for a wide range of implanted medical device applications including drug delivery and cell encapsulation platforms. STATEMENT OF SIGNIFICANCE: A major barrier to the successful clinical translation of many implantable medical devices is the foreign body response (FBR) and resultant deposition of a hypo-permeable fibrotic capsule (FC) around the implant. Perturbation of the implant site using intermittent actuation (IA) of soft-robotic implants has previously been shown to modulate the FBR and reduce FC thickness. However, the mechanisms of action underlying this response were largely unknown. Here, we investigate how IA can alter the activity of myofibroblast cells, and ultimately suggest that there is a mechanical loading threshold within which their fibrotic behaviour can be modulated. These findings can be harnessed to improve functional outcomes for a wide range of medical implants, particularly drug delivery and cell encapsulation devices., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
7. Understanding the problem of digital medication inventory visibility in health systems.
- Author
-
Ashemore AW, Akrap A, Aschermann L, Irvine C, Foley J, Scheper JD, Tarpey R, and Stevenson JG
- Subjects
- Automation, Medication Systems, Hospital, Inventories, Hospital
- Abstract
Purpose: This project describes and quantifies the perceived degree of digital visibility to medication inventory throughout 6 large health systems., Methods: In this project, 6 large health systems evaluated their physical medication inventory for digital visibility, or the degree to which physical medication inventory information is viewable in electronic systems, during a 2-year period (2019-2020). Inventory reports included medication items with either a National Drug Code (NDC) or a unique institutional identifier. Physical inventory reports contained the medication item name and a corresponding NDC or identifier, the quantity on hand, and the physical locations and the storage environments of the inventory items at the time of the audit. Investigators independently reviewed physical inventory reports and categorized medication line items by degree of digital visibility: (1) no digital visibility, (2) partial digital visibility without accurate quantities, (3) partial digital visibility with accurate quantities, or (4) full digital visibility. Data were anonymized, aggregated, and analyzed to characterize the degree of digital visibility across the health systems and to identify locations and storage environments where the greatest improvement is needed., Results: Overall, less than 1% of medication inventory was judged to have full digital visibility. The majority of the evaluated inventory items were categorized as having partial digital visibility, with or without accurate quantities. Analysis by both units of inventory and inventory valuation indicated that only 30% to 35% of inventory had full digital visibility or partial digital visibility with accurate quantities., Conclusion: Most of the medication inventory within 6 large academic centers is either not digitally visible or partially digitally visible but without accurate quantities. Full digital visibility of inventory is rare. Better digital visibility can minimize disruption from recalls and decrease waste. Technology vendors and health systems must collaborate to develop improved automation and systems to make medications on hand more digitally visible., (© American Society of Health-System Pharmacists 2023. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2023
- Full Text
- View/download PDF
8. Soft robot-mediated autonomous adaptation to fibrotic capsule formation for improved drug delivery.
- Author
-
Beatty R, Mendez KL, Schreiber LHJ, Tarpey R, Whyte W, Fan Y, Robinson ST, O'Dwyer J, Simpkin AJ, Tannian J, Dockery P, Dolan EB, Roche ET, and Duffy GP
- Subjects
- Humans, Drug Delivery Systems, Electric Impedance, Methylene Blue, Robotics, Foreign Bodies
- Abstract
The foreign body response impedes the function and longevity of implantable drug delivery devices. As a dense fibrotic capsule forms, integration of the device with the host tissue becomes compromised, ultimately resulting in device seclusion and treatment failure. We present FibroSensing Dynamic Soft Reservoir (FSDSR), an implantable drug delivery device capable of monitoring fibrotic capsule formation and overcoming its effects via soft robotic actuations. Occlusion of the FSDSR porous membrane was monitored over 7 days in a rodent model using electrochemical impedance spectroscopy. The electrical resistance of the fibrotic capsule correlated to its increase in thickness and volume. Our FibroSensing membrane showed great sensitivity in detecting changes at the abiotic/biotic interface, such as collagen deposition and myofibroblast proliferation. The potential of the FSDSR to overcome fibrotic capsule formation and maintain constant drug dosing over time was demonstrated in silico and in vitro. Controlled closed loop release of methylene blue into agarose gels (with a comparable fold change in permeability relating to 7 and 28 days in vivo) was achieved by adjusting the magnitude and frequency of pneumatic actuations after impedance measurements by the FibroSensing membrane. By sensing fibrotic capsule formation in vivo, the FSDSR will be capable of probing and adapting to the foreign body response through dynamic actuation changes. Informed by real-time sensor signals, this device offers the potential for long-term efficacy and sustained drug dosing, even in the setting of fibrotic capsule formation.
- Published
- 2023
- Full Text
- View/download PDF
9. Gene discovery and gene function assignment in filamentous fungi.
- Author
-
Hamer L, Adachi K, Montenegro-Chamorro MV, Tanzer MM, Mahanty SK, Lo C, Tarpey RW, Skalchunes AR, Heiniger RW, Frank SA, Darveaux BA, Lampe DJ, Slater TM, Ramamurthy L, DeZwaan TM, Nelson GH, Shuster JR, Woessner J, and Hamer JE
- Subjects
- Alleles, Cloning, Molecular, Cosmids genetics, Crops, Agricultural microbiology, DNA Transposable Elements genetics, Fungal Proteins genetics, Fungal Proteins physiology, Gene Deletion, Gene Expression Regulation, Fungal, Genes, Fungal physiology, Genomic Library, Mutagenesis, Insertional genetics, Mutagenesis, Site-Directed genetics, Phenotype, Reproducibility of Results, Sequence Analysis, DNA, Transformation, Genetic, Ascomycota genetics, Genes, Fungal genetics, Madurella genetics
- Abstract
Filamentous fungi are a large group of diverse and economically important microorganisms. Large-scale gene disruption strategies developed in budding yeast are not applicable to these organisms because of their larger genomes and lower rate of targeted integration (TI) during transformation. We developed transposon-arrayed gene knockouts (TAGKO) to discover genes and simultaneously create gene disruption cassettes for subsequent transformation and mutant analysis. Transposons carrying a bacterial and fungal drug resistance marker are used to mutagenize individual cosmids or entire libraries in vitro. Cosmids are annotated by DNA sequence analysis at the transposon insertion sites, and cosmid inserts are liberated to direct insertional mutagenesis events in the genome. Based on saturation analysis of a cosmid insert and insertions in a fungal cosmid library, we show that TAGKO can be used to rapidly identify and mutate genes. We further show that insertions can create alterations in gene expression, and we have used this approach to investigate an amino acid oxidation pathway in two important fungal phytopathogens.
- Published
- 2001
- Full Text
- View/download PDF
10. CLINICAL NEUROPATHOLOGICAL CONFERENCE.
- Author
-
MULLER BP, TARPEY RD, GIORGI AP, MIRONE L, and ROUKE FL
- Subjects
- Humans, Accidents, Accidents, Traffic, Embolism, Embolism, Fat, Geriatrics, Intracranial Embolism, Intracranial Embolism and Thrombosis, Pathology, Pulmonary Embolism, Thrombosis, Tibial Fractures
- Published
- 1964
11. EVALUATING DIETARY VOLUME MEASUREMENTS.
- Author
-
TARPEY RW, GLEAVES EW, TONKINSON LV, and THAYER RH
- Subjects
- Animals, Chickens, Diet, Food Analysis, Meat, Ovum, Poultry, Research
- Published
- 1965
- Full Text
- View/download PDF
12. EFFECTS OF ALCOHOL AND MEPHENOXALONE ON PSYCHOPHYSIOLOGICAL TEST PERFORMANCE.
- Author
-
MULLER BP, TARPEY RD, GIORGI AP, MIRONE L, and ROUKE FL
- Subjects
- Humans, Alcohols, Biomedical Research, Emotions, Ethanol, Memory, Movement, Oxazoles, Placebos, Psychological Tests, Psychopharmacology, Psychophysiology, Reaction Time, Tranquilizing Agents
- Published
- 1964
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.