82 results on '"Tarek Mohamed Abd El-Aziz"'
Search Results
2. P2Y2 receptor decreases blood pressure by inhibiting ENaC
- Author
-
Antonio G. Soares, Jorge Contreras, Elena Mironova, Crystal R. Archer, James D. Stockand, and Tarek Mohamed Abd El-Aziz
- Subjects
Cell biology ,Nephrology ,Medicine - Abstract
Stimulating the Gq-coupled P2Y2 receptor (P2ry2) lowers blood pressure. Global knockout of P2ry2 increases blood pressure. Vascular and renal mechanisms are believed to participate in P2ry2 effects on blood pressure. To isolate the role of the kidneys in P2ry2 effects on blood pressure and to reveal the molecular and cellular mechanisms of this action, we test here the necessity of the P2ry2 and the sufficiency of Gq-dependent signaling in renal principal cells to the regulation of the epithelial Na+ channel (ENaC), sodium excretion, and blood pressure. Activating P2ry2 in littermate controls but not principal cell–specific P2ry2-knockout mice decreased the activity of ENaC in renal tubules. Moreover, deletion of P2ry2 in principal cells abolished increases in sodium excretion in response to stimulation of P2ry2 and compromised the normal ability to excrete a sodium load. Consequently, principal cell–specific knockout of P2ry2 prevented decreases in blood pressure in response to P2ry2 stimulation in the deoxycorticosterone acetate–salt (DOCA-salt) model of hypertension. In wild-type littermate controls, such stimulation decreased blood pressure in this model of hypertension by promoting a natriuresis. Pharmacogenetic activation of Gq exclusively in principal cells using targeted expression of Gq–designer receptors exclusively activated by designer drugs and clozapine N-oxide decreased the activity of ENaC in renal tubules, promoting a natriuresis that lowered elevated blood pressure in the DOCA-salt model of hypertension. These findings demonstrate that the kidneys play a major role in decreasing blood pressure in response to P2ry2 activation and that inhibition of ENaC activity in response to P2ry2-mediated Gq signaling lowered blood pressure by increasing renal sodium excretion.
- Published
- 2023
- Full Text
- View/download PDF
3. Snake Venom: A Promising Source of Neurotoxins Targeting Voltage-Gated Potassium Channels
- Author
-
Altaf K. AlShammari, Tarek Mohamed Abd El-Aziz, and Ahmed Al-Sabi
- Subjects
BPTI-Kunitz polypeptides ,CRISPs ,dendrotoxins ,Kv channels blockers ,PLA2 neurotoxins ,presynaptic neurotoxins ,Medicine - Abstract
The venom derived from various sources of snakes represents a vast collection of predominantly protein-based toxins that exhibit a wide range of biological actions, including but not limited to inflammation, pain, cytotoxicity, cardiotoxicity, and neurotoxicity. The venom of a particular snake species is composed of several toxins, while the venoms of around 600 venomous snake species collectively encompass a substantial reservoir of pharmacologically intriguing compounds. Despite extensive research efforts, a significant portion of snake venoms remains uncharacterized. Recent findings have demonstrated the potential application of neurotoxins derived from snake venom in selectively targeting voltage-gated potassium channels (Kv). These neurotoxins include BPTI-Kunitz polypeptides, PLA2 neurotoxins, CRISPs, SVSPs, and various others. This study provides a comprehensive analysis of the existing literature on the significance of Kv channels in various tissues, highlighting their crucial role as proteins susceptible to modulation by diverse snake venoms. These toxins have demonstrated potential as valuable pharmacological resources and research tools for investigating the structural and functional characteristics of Kv channels.
- Published
- 2023
- Full Text
- View/download PDF
4. Editorial: Ion channels in health and disease
- Author
-
Ahmed Al-Sabi, Tarek Mohamed Abd El-Aziz, Peilin Yu, Ashlee H. Rowe, and Heike Wulff
- Subjects
ion channels ,channel modulators ,potassium channels ,sodium channels ,calcium channels ,acid-sensing ion channel 1a ,Physiology ,QP1-981 - Published
- 2022
- Full Text
- View/download PDF
5. Mechanisms and consequences of casein kinase II and ankyrin-3 regulation of the epithelial Na+ channel
- Author
-
Tarek Mohamed Abd El-Aziz, Antonio G. Soares, Elena Mironova, Nina Boiko, Amanpreet Kaur, Crystal R. Archer, James D. Stockand, and Jonathan M. Berman
- Subjects
Medicine ,Science - Abstract
Abstract Activity of the Epithelial Na+ Channel (ENaC) in the distal nephron fine-tunes renal sodium excretion. Appropriate sodium excretion is a key factor in the regulation of blood pressure. Consequently, abnormalities in ENaC function can cause hypertension. Casein Kinase II (CKII) phosphorylates ENaC. The CKII phosphorylation site in ENaC resides within a canonical “anchor” ankyrin binding motif. CKII-dependent phosphorylation of ENaC is necessary and sufficient to increase channel activity and is thought to influence channel trafficking in a manner that increases activity. We test here the hypothesis that phosphorylation of ENaC by CKII within an anchor motif is necessary for ankyrin-3 (Ank-3) regulation of the channel, which is required for normal channel locale and function, and the proper regulation of renal sodium excretion. This was addressed using a fluorescence imaging strategy combining total internal reflection fluorescence (TIRF) microscopy with fluorescence recovery after photobleaching (FRAP) to quantify ENaC expression in the plasma membrane in living cells; and electrophysiology to quantify ENaC activity in split-open collecting ducts from principal cell-specific Ank-3 knockout mice. Sodium excretion studies also were performed in parallel in this knockout mouse. In addition, we substituted a key serine residue in the consensus CKII site in β-ENaC with alanine to abrogate phosphorylation and disrupt the anchor motif. Findings show that disrupting CKII signaling decreases ENaC activity by decreasing expression in the plasma membrane. In the principal cell-specific Ank-3 KO mouse, ENaC activity and sodium excretion were significantly decreased and increased, respectively. These results are consistent with CKII phosphorylation of ENaC functioning as a “switch” that favors Ank-3 binding to increase channel activity.
- Published
- 2021
- Full Text
- View/download PDF
6. Influence of perinatal deltamethrin exposure at distinct developmental stages on motor activity, learning and memory
- Author
-
Chuchu Xi, Zhao Yang, Yiyi Yu, Shaoheng Li, Jing He, Tarek Mohamed Abd El-Aziz, Fang Zhao, and Zhengyu Cao
- Subjects
Deltamethrin ,Perinatal exposure ,Locomotor activity ,Learning and memory ,NMDA receptor ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
Background: Perinatal exposure to deltamethrin (DM) causes attention-deficit/ hyperactivity disorder-like behaviors. However, the vulnerable time window to DM exposure and the possible mechanism are obscure. We aimed to identify the critical window(s) at perinatal stages for DM exposure and the possible mechanism. Method: Pregnant mice were exposed to DM (0.5 mg/kg) at three different prenatal stages [gestational day (GD) 0–5, 6–15 and 16-birth (16-B)] and early postnatal stage (PD 0–10). Locomotor activity, learning and memory were evaluated using open field and Y-maze test, respectively. Nissl staining and western blots were used to examine the neuronal loss and the protein expression, respectively. Results: Perinatal exposures to DM had no effect on reproductive and growth index of offspring. However, mice receiving DM exposure during GD 16-B displayed significantly higher mortality suggesting GD 16-B is the most vulnerable time window to DM exposure. Prenatal but not early postnatal DM exposure impaired locomotor activity, learning and memory, and caused neuron loss in the dentate gyrus of male offspring. However, neither prenatal nor postnatal DM exposure affected mouse behavior of female offspring. Prenatal DM exposures decreased the protein levels of NR2A and NR2B in both hippocampi and cerebral cortices of male offspring. However, female mice receiving DM exposure at GD 16-B but not other stages displayed increased expression levels of NR2A and NR2B in hippocampi. Conclusion: Prenatal but not early postnatal DM exposure impairs the neuron development in male but not female mice. Altered NMDA receptor expression may correlate to DM-induced behavioral deficits.
- Published
- 2022
- Full Text
- View/download PDF
7. Structural and Functional Characterization of a Novel Scorpion Toxin that Inhibits NaV1.8 via Interactions With the DI Voltage Sensor and DII Pore Module
- Author
-
Kiran George, Diego Lopez-Mateos, Tarek Mohamed Abd El-Aziz, Yucheng Xiao, Jake Kline, Hong Bao, Syed Raza, James D. Stockand, Theodore R. Cummins, Luca Fornelli, Matthew P. Rowe, Vladimir Yarov-Yarovoy, and Ashlee H. Rowe
- Subjects
Nav1.8 ,voltage-gated sodium channel ,AZ bark scorpion ,grasshopper mice ,NaTx36 ,slow inactivation ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Voltage-gated sodium channel NaV1.8 regulates transmission of pain signals to the brain. While NaV1.8 has the potential to serve as a drug target, the molecular mechanisms that shape NaV1.8 gating are not completely understood, particularly mechanisms that couple activation to inactivation. Interactions between toxin producing animals and their predators provide a novel approach for investigating NaV structure-function relationships. Arizona bark scorpions produce Na+ channel toxins that initiate pain signaling. However, in predatory grasshopper mice, toxins inhibit NaV1.8 currents and block pain signals. A screen of synthetic peptide toxins predicted from bark scorpion venom showed that peptide NaTx36 inhibited Na+ current recorded from a recombinant grasshopper mouse NaV1.8 channel (OtNaV1.8). Toxin NaTx36 hyperpolarized OtNaV1.8 activation, steady-state fast inactivation, and slow inactivation. Mutagenesis revealed that the first gating charge in the domain I (DI) S4 voltage sensor and an acidic amino acid (E) in the DII SS2 – S6 pore loop are critical for the inhibitory effects of NaTx36. Computational modeling showed that a DI S1 – S2 asparagine (N) stabilizes the NaTx36 – OtNaV1.8 complex while residues in the DI S3 – S4 linker and S4 voltage sensor form electrostatic interactions that allow a toxin glutamine (Q) to contact the first S4 gating charge. Surprisingly, the models predicted that NaTx36 contacts amino acids in the DII S5 – SS1 pore loop instead of the SS2 – S6 loop; the DII SS2 – S6 loop motif (QVSE) alters the conformation of the DII S5 – SS1 pore loop, enhancing allosteric interactions between toxin and the DII S5 – SS1 pore loop. Few toxins have been identified that modify NaV1.8 gating. Moreover, few toxins have been described that modify sodium channel gating via the DI S4 voltage sensor. Thus, NaTx36 and OtNaV1.8 provide tools for investigating the structure-activity relationship between channel activation and inactivation gating, and the connection to alternative pain phenotypes.
- Published
- 2022
- Full Text
- View/download PDF
8. An issue of concern: unique truncated ORF8 protein variants of SARS-CoV-2
- Author
-
Sk. Sarif Hassan, Vaishnavi Kodakandla, Elrashdy M. Redwan, Kenneth Lundstrom, Pabitra Pal Choudhury, Tarek Mohamed Abd El-Aziz, Kazuo Takayama, Ramesh Kandimalla, Amos Lal, Ángel Serrano-Aroca, Gajendra Kumar Azad, Alaa A.A. Aljabali, Giorgio Palù, Gaurav Chauhan, Parise Adadi, Murtaza Tambuwala, Adam M. Brufsky, Wagner Baetas-da-Cruz, Debmalya Barh, Vasco Azevedo, Nikolas G. Bazan, Bruno Silva Andrade, Raner José Santana Silva, and Vladimir N. Uversky
- Subjects
ORF8 ,SARS-CoV-2 ,COVID-19 ,Truncated ,Intrinsically disordered region ,Truncation mutation ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Open reading frame 8 (ORF8) shows one of the highest levels of variability among accessory proteins in Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the causative agent of Coronavirus Disease 2019 (COVID-19). It was previously reported that the ORF8 protein inhibits the presentation of viral antigens by the major histocompatibility complex class I (MHC-I), which interacts with host factors involved in pulmonary inflammation. The ORF8 protein assists SARS-CoV-2 in evading immunity and plays a role in SARS-CoV-2 replication. Among many contributing mutations, Q27STOP, a mutation in the ORF8 protein, defines the B.1.1.7 lineage of SARS-CoV-2, engendering the second wave of COVID-19. In the present study, 47 unique truncated ORF8 proteins (T-ORF8) with the Q27STOP mutations were identified among 49,055 available B.1.1.7 SARS-CoV-2 sequences. The results show that only one of the 47 T-ORF8 variants spread to over 57 geo-locations in North America, and other continents, which include Africa, Asia, Europe and South America. Based on various quantitative features, such as amino acid homology, polar/non-polar sequence homology, Shannon entropy conservation, and other physicochemical properties of all specific 47 T-ORF8 protein variants, nine possible T-ORF8 unique variants were defined. The question as to whether T-ORF8 variants function similarly to the wild type ORF8 is yet to be investigated. A positive response to the question could exacerbate future COVID-19 waves, necessitating severe containment measures.
- Published
- 2022
- Full Text
- View/download PDF
9. SARS-CoV-2 infection enhances mitochondrial PTP complex activity to perturb cardiac energetics
- Author
-
Karthik Ramachandran, Soumya Maity, Alagar R. Muthukumar, Soundarya Kandala, Dhanendra Tomar, Tarek Mohamed Abd El-Aziz, Cristel Allen, Yuyang Sun, Manigandan Venkatesan, Travis R. Madaris, Kevin Chiem, Rachel Truitt, Neelanjan Vishnu, Gregory Aune, Allen Anderson, Luis Martinez, Wenli Yang, James D. Stockand, Brij B. Singh, Subramanya Srikantan, W. Brian Reeves, and Muniswamy Madesh
- Subjects
Cardiovascular medicine ,Virology ,Transcriptomics ,Science - Abstract
Summary: SARS-CoV-2 is a newly identified coronavirus that causes the respiratory disease called coronavirus disease 2019 (COVID-19). With an urgent need for therapeutics, we lack a full understanding of the molecular basis of SARS-CoV-2-induced cellular damage and disease progression. Here, we conducted transcriptomic analysis of human PBMCs, identified significant changes in mitochondrial, ion channel, and protein quality-control gene products. SARS-CoV-2 proteins selectively target cellular organelle compartments, including the endoplasmic reticulum and mitochondria. M-protein, NSP6, ORF3A, ORF9C, and ORF10 bind to mitochondrial PTP complex components cyclophilin D, SPG-7, ANT, ATP synthase, and a previously undescribed CCDC58 (coiled-coil domain containing protein 58). Knockdown of CCDC58 or mPTP blocker cyclosporin A pretreatment enhances mitochondrial Ca2+ retention capacity and bioenergetics. SARS-CoV-2 infection exacerbates cardiomyocyte autophagy and promotes cell death that was suppressed by cyclosporin A treatment. Our findings reveal that SARS-CoV-2 viral proteins suppress cardiomyocyte mitochondrial function that disrupts cardiomyocyte Ca2+ cycling and cell viability.
- Published
- 2022
- Full Text
- View/download PDF
10. Stimulation of the Epithelial Na+ Channel in Renal Principal Cells by Gs-Coupled Designer Receptors Exclusively Activated by Designer Drugs
- Author
-
Antonio G. Soares, Jorge Contreras, Crystal R. Archer, Elena Mironova, Rebecca Berdeaux, James D. Stockand, and Tarek Mohamed Abd El-Aziz
- Subjects
vasopressin ,sodium excretion ,sodium transport ,hypertension ,epithelial sodium channel ,Physiology ,QP1-981 - Abstract
The activity of the Epithelial Na+ Channel (ENaC) in renal principal cells (PC) fine-tunes sodium excretion and consequently, affects blood pressure. The Gs-adenylyl cyclase-cAMP signal transduction pathway is believed to play a central role in the normal control of ENaC activity in PCs. The current study quantifies the importance of this signaling pathway to the regulation of ENaC activity in vivo using a knock-in mouse that has conditional expression of Gs-DREADD (designer receptors exclusively activated by designer drugs; GsD) in renal PCs. The GsD mouse also contains a cAMP response element-luciferase reporter transgene for non-invasive bioluminescence monitoring of cAMP signaling. Clozapine N-oxide (CNO) was used to selectively and temporally stimulate GsD. Treatment with CNO significantly increased luciferase bioluminescence in the kidneys of PC-specific GsD but not control mice. CNO also significantly increased the activity of ENaC in principal cells in PC-specific GsD mice compared to untreated knock-in mice and CNO treated littermate controls. The cell permeable cAMP analog, 8-(4-chlorophenylthio)adenosine 3′,5′-cyclic monophosphate, significantly increased the activity and expression in the plasma membrane of recombinant ENaC expressed in CHO and COS-7 cells, respectively. Treatment of PC-specific GsD mice with CNO rapidly and significantly decreased urinary Na+ excretion compared to untreated PC-specific GsD mice and treated littermate controls. This decrease in Na+ excretion in response to CNO in PC-specific GsD mice was similar in magnitude and timing as that induced by the selective vasopressin receptor 2 agonist, desmopressin, in wild type mice. These findings demonstrate for the first time that targeted activation of Gs signaling exclusively in PCs is sufficient to increase ENaC activity and decrease dependent urinary Na+ excretion in live animals.
- Published
- 2021
- Full Text
- View/download PDF
11. Marine Brominated Tyrosine Alkaloids as Promising Inhibitors of SARS-CoV-2
- Author
-
Amr El-Demerdash, Afnan Hassan, Tarek Mohamed Abd El-Aziz, James D. Stockand, and Reem K. Arafa
- Subjects
SARS-CoV-2 ,virtual screening ,molecular docking ,molecular dynamics simulation ,ADME/Tox ,brominated tyrosine alkaloids ,Organic chemistry ,QD241-441 - Abstract
There have been more than 150 million confirmed cases of SARS-CoV-2 since the beginning of the pandemic in 2019. By June 2021, the mortality from such infections approached 3.9 million people. Despite the availability of a number of vaccines which provide protection against this virus, the evolution of new viral variants, inconsistent availability of the vaccine around the world, and vaccine hesitancy, in some countries, makes it unreasonable to rely on mass vaccination alone to combat this pandemic. Consequently, much effort is directed to identifying potential antiviral treatments. Marine brominated tyrosine alkaloids are recognized to have antiviral potential. We test here the antiviral capacity of fourteen marine brominated tyrosine alkaloids against five different target proteins from SARS-CoV-2, including main protease (Mpro) (PDB ID: 6lu7), spike glycoprotein (PDB ID: 6VYB), nucleocapsid phosphoprotein (PDB ID: 6VYO), membrane glycoprotein (PDB ID: 6M17), and non-structural protein 10 (nsp10) (PDB ID: 6W4H). These marine alkaloids, particularly the hexabrominated compound, fistularin-3, shows promising docking interactions with predicted binding affinities (S-score = −7.78, −7.65, −6.39, −6.28, −8.84 Kcal/mol) for the main protease (Mpro) (PDB ID: 6lu7), spike glycoprotein (PDB ID: 6VYB), nucleocapsid phosphoprotein (PDB ID: 6VYO), membrane glycoprotein (PDB ID: 6M17), and non-structural protein 10 (nsp10) (PDB ID: 6W4H), respectively, where it forms better interactions with the protein pockets than the native interaction. It also shows promising molecular dynamics, pharmacokinetics, and toxicity profiles. As such, further exploration of the antiviral properties of fistularin-3 against SARS-CoV-2 is merited.
- Published
- 2021
- Full Text
- View/download PDF
12. COVID-19 Vaccines and Thrombosis—Roadblock or Dead-End Street?
- Author
-
Kenneth Lundstrom, Debmalya Barh, Bruce D. Uhal, Kazuo Takayama, Alaa A. A. Aljabali, Tarek Mohamed Abd El-Aziz, Amos Lal, Elrashdy M. Redwan, Parise Adadi, Gaurav Chauhan, Samendra P. Sherchan, Gajendra Kumar Azad, Nima Rezaei, Ángel Serrano-Aroca, Nicolas G. Bazan, Sk Sarif Hassan, Pritam Kumar Panda, Pabitra Pal Choudhury, Damiano Pizzol, Ramesh Kandimalla, Wagner Baetas-da-Cruz, Yogendra Kumar Mishra, Giorgio Palu, Adam M. Brufsky, Murtaza M. Tambuwala, and Vladimir N. Uversky
- Subjects
COVID-19 ,vaccines ,SARS-CoV-2 ,thrombosis ,chronic smokers ,Microbiology ,QR1-502 - Abstract
Two adenovirus-based vaccines, ChAdOx1 nCoV-19 and Ad26.COV2.S, and two mRNA-based vaccines, BNT162b2 and mRNA.1273, have been approved by the European Medicines Agency (EMA), and are invaluable in preventing and reducing the incidence of coronavirus disease-2019 (COVID-19). Recent reports have pointed to thrombosis with associated thrombocytopenia as an adverse effect occurring at a low frequency in some individuals after vaccination. The causes of such events may be related to SARS-CoV-2 spike protein interactions with different C-type lectin receptors, heparan sulfate proteoglycans (HSPGs) and the CD147 receptor, or to different soluble splice variants of the spike protein, adenovirus vector interactions with the CD46 receptor or platelet factor 4 antibodies. Similar findings have been reported for several viral diseases after vaccine administration. In addition, immunological mechanisms elicited by viral vectors related to cellular delivery could play a relevant role in individuals with certain genetic backgrounds. Although rare, the potential COVID-19 vaccine-induced immune thrombotic thrombocytopenia (VITT) requires immediate validation, especially in risk groups, such as the elderly, chronic smokers, and individuals with pre-existing incidences of thrombocytopenia; and if necessary, a reformulation of existing vaccines.
- Published
- 2021
- Full Text
- View/download PDF
13. Identification and Characterization of Novel Proteins from Arizona Bark Scorpion Venom That Inhibit Nav1.8, a Voltage-Gated Sodium Channel Regulator of Pain Signaling
- Author
-
Tarek Mohamed Abd El-Aziz, Yucheng Xiao, Jake Kline, Harold Gridley, Alyse Heaston, Klaus D. Linse, Micaiah J. Ward, Darin R. Rokyta, James D. Stockand, Theodore R. Cummins, Luca Fornelli, and Ashlee H. Rowe
- Subjects
voltage-gated sodium channel ,Nav1.8 ,hyperpolarization ,pain signaling ,scorpion venom ,neurotoxin ,Medicine - Abstract
The voltage-gated sodium channel Nav1.8 is linked to neuropathic and inflammatory pain, highlighting the potential to serve as a drug target. However, the biophysical mechanisms that regulate Nav1.8 activation and inactivation gating are not completely understood. Progress has been hindered by a lack of biochemical tools for examining Nav1.8 gating mechanisms. Arizona bark scorpion (Centruroides sculpturatus) venom proteins inhibit Nav1.8 and block pain in grasshopper mice (Onychomys torridus). These proteins provide tools for examining Nav1.8 structure–activity relationships. To identify proteins that inhibit Nav1.8 activity, venom samples were fractioned using liquid chromatography (reversed-phase and ion exchange). A recombinant Nav1.8 clone expressed in ND7/23 cells was used to identify subfractions that inhibited Nav1.8 Na+ current. Mass-spectrometry-based bottom-up proteomic analyses identified unique peptides from inhibitory subfractions. A search of the peptides against the AZ bark scorpion venom gland transcriptome revealed four novel proteins between 40 and 60% conserved with venom proteins from scorpions in four genera (Centruroides, Parabuthus, Androctonus, and Tityus). Ranging from 63 to 82 amino acids, each primary structure includes eight cysteines and a “CXCE” motif, where X = an aromatic residue (tryptophan, tyrosine, or phenylalanine). Electrophysiology data demonstrated that the inhibitory effects of bioactive subfractions can be removed by hyperpolarizing the channels, suggesting that proteins may function as gating modifiers as opposed to pore blockers.
- Published
- 2021
- Full Text
- View/download PDF
14. The Search for Natural and Synthetic Inhibitors That Would Complement Antivenoms as Therapeutics for Snakebite Envenoming
- Author
-
José María Gutiérrez, Laura-Oana Albulescu, Rachel H. Clare, Nicholas R. Casewell, Tarek Mohamed Abd El-Aziz, Teresa Escalante, and Alexandra Rucavado
- Subjects
snake venom ,antivenom ,inhibitors ,metalloproteinases ,phospholipases A2 ,three finger toxins ,Medicine - Abstract
A global strategy, under the coordination of the World Health Organization, is being unfolded to reduce the impact of snakebite envenoming. One of the pillars of this strategy is to ensure safe and effective treatments. The mainstay in the therapy of snakebite envenoming is the administration of animal-derived antivenoms. In addition, new therapeutic options are being explored, including recombinant antibodies and natural and synthetic toxin inhibitors. In this review, snake venom toxins are classified in terms of their abundance and toxicity, and priority actions are being proposed in the search for snake venom metalloproteinase (SVMP), phospholipase A2 (PLA2), three-finger toxin (3FTx), and serine proteinase (SVSP) inhibitors. Natural inhibitors include compounds isolated from plants, animal sera, and mast cells, whereas synthetic inhibitors comprise a wide range of molecules of a variable chemical nature. Some of the most promising inhibitors, especially SVMP and PLA2 inhibitors, have been developed for other diseases and are being repurposed for snakebite envenoming. In addition, the search for drugs aimed at controlling endogenous processes generated in the course of envenoming is being pursued. The present review summarizes some of the most promising developments in this field and discusses issues that need to be considered for the effective translation of this knowledge to improve therapies for tackling snakebite envenoming.
- Published
- 2021
- Full Text
- View/download PDF
15. Efficient functional neutralization of lethal peptide toxins in vivo by oligonucleotides
- Author
-
Tarek Mohamed Abd El-Aziz, Corinne Ravelet, Jordi Molgo, Emmanuelle Fiore, Simon Pale, Muriel Amar, Sawsan Al-Khoury, Jérôme Dejeu, Mahmoud Fadl, Michel Ronjat, Germain Sotoing Taiwe, Denis Servent, Eric Peyrin, and Michel De Waard
- Subjects
Medicine ,Science - Abstract
Abstract Medical means to save the life of human patients affected by drug abuse, envenomation or critical poisoning are currently limited. While the compounds at risks are most often well identified, particularly for bioterrorism, chemical intervention to counteract the toxic effects of the ingested/injected compound(s) is restricted to the use of antibodies. Herein, we illustrate that DNA aptamers, targeted to block the pharmacophore of a poisonous compound, represent a fast-acting and reliable method of neutralization in vivo that possesses efficient and long-lasting life-saving properties. For this proof of concept, we used one putative bioweapon, αC-conotoxin PrXA, a marine snail ultrafast-killing paralytic toxin, to identify peptide-binding DNA aptamers. We illustrate that they can efficiently neutralize the toxin-induced (i) displacement of [125I]-α-bungarotoxin binding onto nicotinic receptors, (ii) inhibition of diaphragm muscle contraction, and (iii) lethality in mice. Our results demonstrate the preclinical value of DNA aptamers as fast-acting, safe and cheap antidotes to lethal toxins at risk of misuse in bioterrorism and offer hope for an alternative method than donor sera to treat cases of envenomation.
- Published
- 2017
- Full Text
- View/download PDF
16. Urgent Need for Field Surveys of Coronaviruses in Southeast Asia to Understand the SARS-CoV-2 Phylogeny and Risk Assessment for Future Outbreaks
- Author
-
Murat Seyran, Sk. Sarif Hassan, Vladimir N. Uversky, Pabitra Pal Choudhury, Bruce D. Uhal, Kenneth Lundstrom, Diksha Attrish, Nima Rezaei, Alaa A. A. Aljabali, Shinjini Ghosh, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Ramesh Kandimalla, Murtaza M. Tambuwala, Amos Lal, Gajendra Kumar Azad, Samendra P. Sherchan, Wagner Baetas-da-Cruz, Giorgio Palù, and Adam M. Brufsky
- Subjects
n/a ,Microbiology ,QR1-502 - Abstract
Phylogenetic analysis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on a single isolate of bat coronaviruses (bat CoVs) which does not adequately represent genetically related coronaviruses (CoVs) [...]
- Published
- 2021
- Full Text
- View/download PDF
17. Comprehensive Virtual Screening of the Antiviral Potentialities of Marine Polycyclic Guanidine Alkaloids against SARS-CoV-2 (COVID-19)
- Author
-
Amr El-Demerdash, Ahmed M. Metwaly, Afnan Hassan, Tarek Mohamed Abd El-Aziz, Eslam B. Elkaeed, Ibrahim H. Eissa, Reem K. Arafa, and James D. Stockand
- Subjects
virtual screening ,docking ,COVID-19 ,antiviral ,cytotoxicity ,guanidine alkaloids ,Microbiology ,QR1-502 - Abstract
The huge global expansion of the COVID-19 pandemic caused by the novel SARS-corona virus-2 is an extraordinary public health emergency. The unavailability of specific treatment against SARS-CoV-2 infection necessitates the focus of all scientists in this direction. The reported antiviral activities of guanidine alkaloids encouraged us to run a comprehensive in silico binding affinity of fifteen guanidine alkaloids against five different proteins of SARS-CoV-2, which we investigated. The investigated proteins are COVID-19 main protease (Mpro) (PDB ID: 6lu7), spike glycoprotein (PDB ID: 6VYB), nucleocapsid phosphoprotein (PDB ID: 6VYO), membrane glycoprotein (PDB ID: 6M17), and a non-structural protein (nsp10) (PDB ID: 6W4H). The binding energies for all tested compounds indicated promising binding affinities. A noticeable superiority for the pentacyclic alkaloids particularly, crambescidin 786 (5) and crambescidin 826 (13) has been observed. Compound 5 exhibited very good binding affinities against Mpro (ΔG = −8.05 kcal/mol), nucleocapsid phosphoprotein (ΔG = −6.49 kcal/mol), and nsp10 (ΔG = −9.06 kcal/mol). Compound 13 showed promising binding affinities against Mpro (ΔG = −7.99 kcal/mol), spike glycoproteins (ΔG = −6.95 kcal/mol), and nucleocapsid phosphoprotein (ΔG = −8.01 kcal/mol). Such promising activities might be attributed to the long ω-fatty acid chain, which may play a vital role in binding within the active sites. The correlation of c Log P with free binding energies has been calculated. Furthermore, the SAR of the active compounds has been clarified. The Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) studies were carried out in silico for the 15 compounds; most examined compounds showed optimal to good range levels of ADMET aqueous solubility, intestinal absorption and being unable to pass blood brain barrier (BBB), non-inhibitors of CYP2D6, non-hepatotoxic, and bind plasma protein with a percentage less than 90%. The toxicity of the tested compounds was screened in silico against five models (FDA rodent carcinogenicity, carcinogenic potency TD50, rat maximum tolerated dose, rat oral LD50, and rat chronic lowest observed adverse effect level (LOAEL)). All compounds showed expected low toxicity against the tested models. Molecular dynamic (MD) simulations were also carried out to confirm the stable binding interactions of the most promising compounds, 5 and 13, with their targets. In conclusion, the examined 15 alkaloids specially 5 and 13 showed promising docking, ADMET, toxicity and MD results which open the door for further investigations for them against SARS-CoV-2.
- Published
- 2021
- Full Text
- View/download PDF
18. Possible Transmission Flow of SARS-CoV-2 Based on ACE2 Features
- Author
-
Sk. Sarif Hassan, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Alaa A. A. Aljabali, Bruce D. Uhal, Kenneth Lundstrom, Nima Rezaei, Vladimir N. Uversky, Murat Seyran, Damiano Pizzol, Parise Adadi, Antonio Soares, Tarek Mohamed Abd El-Aziz, Ramesh Kandimalla, Murtaza M. Tambuwala, Gajendra Kumar Azad, Samendra P. Sherchan, Wagner Baetas-da-Cruz, Kazuo Takayama, Ángel Serrano-Aroca, Gaurav Chauhan, Giorgio Palu, and Adam M. Brufsky
- Subjects
ACE2 ,viral spike receptor-binding domain ,SARS-CoV-2 ,transmission ,bioinformatics ,Organic chemistry ,QD241-441 - Abstract
Angiotensin-converting enzyme 2 (ACE2) is the cellular receptor for the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) that is engendering the severe coronavirus disease 2019 (COVID-19) pandemic. The spike (S) protein receptor-binding domain (RBD) of SARS-CoV-2 binds to the three sub-domains viz. amino acids (aa) 22–42, aa 79–84, and aa 330–393 of ACE2 on human cells to initiate entry. It was reported earlier that the receptor utilization capacity of ACE2 proteins from different species, such as cats, chimpanzees, dogs, and cattle, are different. A comprehensive analysis of ACE2 receptors of nineteen species was carried out in this study, and the findings propose a possible SARS-CoV-2 transmission flow across these nineteen species.
- Published
- 2020
- Full Text
- View/download PDF
19. Potential Role of Platelet-Activating C-Type Lectin-Like Proteins in Viper Envenomation Induced Thrombotic Microangiopathy Symptom
- Author
-
Chengbo Long, Ming Liu, Huiwen Tian, Ya Li, Feilong Wu, James Mwangi, Qiumin Lu, Tarek Mohamed Abd El-Aziz, Ren Lai, and Chuanbin Shen
- Subjects
snake venom ,C-type lectin-like proteins ,platelet ,cerebral ischemia ,thrombotic microangiopathy ,Medicine - Abstract
Envenomation by viperid snakes may lead to severe bleeding, consumption coagulopathy, and thrombotic microangiopathy symptoms. The exact etiology or toxins responsible for thrombotic microangiopathy symptoms after snake envenomation remain obscure. Snake C-type lectin-like proteins (snaclecs) are one of the main non-enzymatic protein constituents in viper venoms, of which a majority are considered as modulators of thrombosis and hemostasis. In this study, we demonstrated that two snaclecs (mucetin and stejnulxin), isolated and identified from Protobothrops mucrosquamatus and Trimeresurus stejnegeri venoms, directly induced platelet degranulation and clot-retraction in vitro, and microvascular thrombosis has been confirmed in various organs in vivo. These snaclecs reduced cerebral blood flow and impaired motor balance and spatial memories in mice, which partially represent the thrombotic microangiopathy symptoms in some snakebite patients. The functional blocking of these snaclecs with antibodies alleviated the viper venom induced platelet activation and thrombotic microangiopathy-like symptoms. Understanding the pathophysiology of thrombotic microangiopathy associated with snake envenoming may lead to emerging therapeutic strategies.
- Published
- 2020
- Full Text
- View/download PDF
20. The Importance of Research on the Origin of SARS-CoV-2
- Author
-
Kenneth Lundstrom, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Sk. Sarif Hassan, Antonio Soares, Ramesh Kandimalla, Murtaza M. Tambuwala, Alaa A. A. Aljabali, Gajendra Kumar Azad, Pabitra Pal Choudhury, Vladimir N. Uversky, Samendra P. Sherchan, Bruce D. Uhal, Nima Rezaei, and Adam M. Brufsky
- Subjects
coronavirus ,COVID-19 pandemic ,origin of SARS-CoV-2 ,receptor binding domain ,genome homology ,natural selection ,Microbiology ,QR1-502 - Abstract
The origin of the severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) virus causing the COVID-19 pandemic has not yet been fully determined. Despite the consensus about the SARS-CoV-2 origin from bat CoV RaTG13, discrepancy to host tropism to other human Coronaviruses exist. SARS-CoV-2 also possesses some differences in its S protein receptor-binding domain, glycan-binding N-terminal domain and the surface of the sialic acid-binding domain. Despite similarities based on cryo-EM and biochemical studies, the SARS-CoV-2 shows higher stability and binding affinity to the ACE2 receptor. The SARS-CoV-2 does not appear to present a mutational “hot spot” as only the D614G mutation has been identified from clinical isolates. As laboratory manipulation is highly unlikely for the origin of SARS-CoV-2, the current possibilities comprise either natural selection in animal host before zoonotic transfer or natural selection in humans following zoonotic transfer. In the former case, despite SARS-CoV-2 and bat RaTG13 showing 96% identity some pangolin Coronaviruses exhibit very high similarity to particularly the receptor-binding domain of SARS-CoV-2. In the latter case, it can be hypothesized that the SARS-CoV-2 genome has adapted during human-to-human transmission and based on available data, the isolated SARS-CoV-2 genomes derive from a common origin. Before the origin of SARS-CoV-2 can be confirmed additional research is required
- Published
- 2020
- Full Text
- View/download PDF
21. Actiflagelin, a new sperm activator isolated from Walterinnesia aegyptia venom using phenotypic screening
- Author
-
Tarek Mohamed Abd El-Aziz, Sawsan Al Khoury, Lucie Jaquillard, Mathilde Triquigneaux, Guillaume Martinez, Sandrine Bourgoin-Voillard, Michel Sève, Christophe Arnoult, Rémy Beroud, and Michel De Waard
- Subjects
Snake venom ,Walterinnesia aegyptia ,Bioactive compounds ,Fertility ,Sperm motility ,Venomics ,Tandem mass spectrometry ,De novo sequencing ,Edman degradation ,Arctic medicine. Tropical medicine ,RC955-962 ,Toxicology. Poisons ,RA1190-1270 ,Zoology ,QL1-991 - Abstract
Abstract Background Sperm contains a wealth of cell surface receptors and ion channels that are required for most of its basic functions such as motility and acrosome reaction. Conversely, animal venoms are enriched in bioactive compounds that primarily target those ion channels and cell surface receptors. We hypothesized, therefore, that animal venoms should be rich enough in sperm-modulating compounds for a drug discovery program. Our objective was to demonstrate this fact by using a sperm-based phenotypic screening to identify positive modulators from the venom of Walterinnesia aegyptia. Methods Herein, as proof of concept that venoms contain interesting compounds for sperm physiology, we fractionated Walterinnesia aegyptia snake venom by RP-HPLC and screened for bioactive fractions capable of accelerating mouse sperm motility (primary screening). Next, we purified each compound from the positive fraction by cation exchange and identified the bioactive peptide by secondary screening. The peptide sequence was established by Edman sequencing of the reduced/alkylated compound combined to LC-ESI-QTOF MS/MS analyses of reduced/alkylated fragment peptides following trypsin or V8 protease digestion. Results Using this two-step purification protocol combined to cell phenotypic screening, we identified a new toxin of 7329.38 Da (actiflagelin) that activates sperm motility in vitro from OF1 male mice. Actiflagelin is 63 amino acids in length and contains five disulfide bridges along the proposed pattern of disulfide connectivity C1-C5, C2-C3, C4- C6, C7-C8 and C9-C10. Modeling of its structure suggests that it belongs to the family of three finger toxins with a noticeable homology with bucandin, a peptide from Bungarus candidus venom. Conclusions This report demonstrates the feasibility of identifying profertility compounds that may be of therapeutic potential for infertility cases where motility is an issue.
- Published
- 2018
- Full Text
- View/download PDF
22. Snake Venoms in Drug Discovery: Valuable Therapeutic Tools for Life Saving
- Author
-
Tarek Mohamed Abd El-Aziz, Antonio Garcia Soares, and James D. Stockand
- Subjects
snake venoms ,toxins ,pharmacology ,therapeutic applications ,drug discovery ,Medicine - Abstract
Animal venoms are used as defense mechanisms or to immobilize and digest prey. In fact, venoms are complex mixtures of enzymatic and non-enzymatic components with specific pathophysiological functions. Peptide toxins isolated from animal venoms target mainly ion channels, membrane receptors and components of the hemostatic system with high selectivity and affinity. The present review shows an up-to-date survey on the pharmacology of snake-venom bioactive components and evaluates their therapeutic perspectives against a wide range of pathophysiological conditions. Snake venoms have also been used as medical tools for thousands of years especially in tradition Chinese medicine. Consequently, snake venoms can be considered as mini-drug libraries in which each drug is pharmacologically active. However, less than 0.01% of these toxins have been identified and characterized. For instance, Captopril® (Enalapril), Integrilin® (Eptifibatide) and Aggrastat® (Tirofiban) are drugs based on snake venoms, which have been approved by the FDA. In addition to these approved drugs, many other snake venom components are now involved in preclinical or clinical trials for a variety of therapeutic applications. These examples show that snake venoms can be a valuable source of new principle components in drug discovery.
- Published
- 2019
- Full Text
- View/download PDF
23. Aptamer Efficacies for In Vitro and In Vivo Modulation of αC-Conotoxin PrXA Pharmacology
- Author
-
Germain Sotoing Taiwe, Jérôme Montnach, Sébastien Nicolas, Stéphan De Waard, Emmanuelle Fiore, Eric Peyrin, Tarek Mohamed Abd El-Aziz, Muriel Amar, Jordi Molgó, Michel Ronjat, Denis Servent, Corinne Ravelet, and Michel De Waard
- Subjects
αC-conotoxin PrXA ,DNA aptamer ,oligonucleotide ,toxin neutralization ,cone peptide ,venom ,Organic chemistry ,QD241-441 - Abstract
The medical staff is often powerless to treat patients affected by drug abuse or misuse and poisoning. In the case of envenomation, the treatment of choice remains horse sera administration that poses a wealth of other medical conditions and threats. Previously, we have demonstrated that DNA-based aptamers represent powerful neutralizing tools for lethal animal toxins of venomous origin. Herein, we further pursued our investigations in order to understand whether all toxin-interacting aptamers possessed equivalent potencies to neutralize αC-conotoxin PrXA in vitro and in vivo. We confirmed the high lethality in mice produced by αC-conotoxin PrXA regardless of the mode of injection and further characterized myoclonus produced by the toxin. We used high-throughput patch-clamp technology to assess the effect of αC-conotoxin PrXA on ACh-mediated responses in TE671 cells, responses that are carried by muscle-type nicotinic receptors. We show that 2 out of 4 aptamers reduce the affinity of the toxin for its receptor, most likely by interfering with the pharmacophore. In vivo, more complex responses on myoclonus and mice lethality are observed depending on the type of aptamer and mode of administration (concomitant or differed). Concomitant administration always works better than differed administration indicating the stability of the complex in vivo. The most remarkable conclusion is that an aptamer that has no or a limited efficacy in vitro may nevertheless be functional in vivo probably owing to an impact on the biodistribution or pharmacokinetics of the toxin in vivo. Overall, the results highlight that a blind selection of aptamers against toxins leads to efficient neutralizing compounds in vivo regardless of the mode of action. This opens the door to the use of aptamer mixtures as substitutes to horse sera for the neutralization of life-threatening animal venoms, an important WHO concern in tropical areas.
- Published
- 2019
- Full Text
- View/download PDF
24. Implications derived from S-protein variants of SARS-CoV-2 from six continents
- Author
-
Murtaza M. Tambuwala, Nima Rezaei, Raner Jośe Santana Silva, Amos Lal, Tarek Mohamed Abd El-Aziz, Alaa A. A. Aljabali, Pabitra Pal Choudhury, Vasco Azevedo, Adam Brufsky, Parise Adadi, Ángel Serrano-Aroca, Bruno Silva Andrade, Debmalya Barh, Bruce D. Uhal, Murat Seyran, Kenneth Lundstrom, Giorgio Palù, Gajendra Kumar Azad, Kazuo Takayama, Vladimir N. Uversky, Sk. Sarif Hassan, Ramesh Kandimalla, Samendra P. Sherchan, and Elrashdy M. Redwan
- Subjects
2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Entropy ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,COVID-19 ,Spike Protein ,General Medicine ,Biology ,Biochemistry ,law.invention ,Vaccination ,Transmission (mechanics) ,Amino Acid Substitution ,Structural Biology ,law ,Evolutionary biology ,Mutation ,Spike Glycoprotein, Coronavirus ,Pandemic ,Humans ,Isoelectric Point ,Pandemics ,Molecular Biology ,Phylogeny ,Phylogenetic relationship - Abstract
The spike (S) protein is a critical determinant of the infectivity and antigenicity of SARS-CoV-2. Several mutations in the S protein of SARS-CoV-2 have already been detected, and their effect in immune system evasion and enhanced transmission as a cause of increased morbidity and mortality are being investigated. From pathogenic and epidemiological perspectives, S proteins are of prime interest to researchers. This study focused on the unique variants of S proteins from six continents: Asia, Africa, Europe, Oceania, South America, and North America. In comparison to the other five continents, Africa had the highest percentage of unique S proteins (29.1%). The phylogenetic relationship implies that unique S proteins from North America are significantly different from those of the other five continents. They are most likely to spread to the other geographic locations through international travel or naturally by emerging mutations. It is suggested that restriction of international travel should be considered, and massive vaccination as an utmost measure to combat the spread of the COVID-19 pandemic. It is also further suggested that the efficacy of existing vaccines and future vaccine development must be reviewed with careful scrutiny, and if needed, further re-engineered based on requirements dictated by new emerging S protein variants.
- Published
- 2021
25. NOXA1-dependent NADPH oxidase 1 signaling mediates angiotensin II activation of the epithelial sodium channel
- Author
-
Elena Mironova, Crystal R. Archer, Aleksandr E. Vendrov, Marschall S. Runge, Nageswara R. Madamanchi, William J. Arendshorst, James D. Stockand, and Tarek Mohamed Abd El-Aziz
- Subjects
Mice, Knockout ,Mice ,Physiology ,Angiotensin II ,Sodium ,NADPH Oxidase 1 ,Animals ,NADPH Oxidases ,Epithelial Sodium Channels ,Adaptor Proteins, Signal Transducing - Abstract
Activity of the epithelial Na+ channel (ENaC) in the distal nephron fine-tunes renal Na+ excretion. Angiotensin II (ANG II) has been reported to enhance ENaC activity. Emerging evidence suggests that NADPH oxidase (NOX) signaling plays an important role in the stimulation of ENaC by ANG II in principal cells. The present findings indicate that NOX activator 1/NOX1 signaling mediates ANG II stimulation of ENaC in renal principal cells.
- Published
- 2022
26. Scutellarein attenuates atopic dermatitis by selectively inhibiting transient receptor potential vanilloid 3 channels
- Author
-
Yujing Wang, Liaoxi Tan, Kejun Jiao, Chu Xue, Qinglian Tang, Shan Jiang, Younan Ren, Hao Chen, Tarek Mohamed Abd El‐Aziz, Khalid N. M. Abdelazeem, Ye Yu, Fang Zhao, Michael X. Zhu, and Zhengyu Cao
- Subjects
Pharmacology ,Inflammation ,Mice, Knockout ,Anti-Inflammatory Agents ,TRPV Cation Channels ,Immunoglobulin E ,Dermatitis, Atopic ,Molecular Docking Simulation ,Mice ,Transient Receptor Potential Channels ,Animals ,Cymenes ,Cytokines ,Humans ,Dinitrofluorobenzene ,Cysteine ,RNA, Messenger ,Apigenin - Abstract
Atopic dermatitis (AD) is one of the most common chronic inflammatory cutaneous diseases with unmet clinical needs. As a common ingredient found in several medicinal herbs with efficacy on cutaneous inflammatory diseases, Scutellarein (Scu) has been shown to possess anti-inflammatory and anti-proliferative activities. We aimed to evaluate the therapeutic efficacy of Scu against AD and its underlying molecular mechanism.Efficacy of Scu on AD was evaluated in 2,4-dinitrofluorobenzene (DNFB) and carvacrol-induced dermatitis mouse models. Cytokine mRNA and serum IgE levels were examined using qPCR and ELISA, respectively. Voltage clamp recordings were used to measure currents mediated by transient receptor potential (TRP) channels. In silico docking, site-direct mutagenesis, and covalent modification were used to explore the binding pocket of Scu on TRPV3.Subcutaneous administration of Scu efficaciously suppresses DNFB and carvacrol-induced pruritus, epidermal hyperplasia and skin inflammation in wild type mice but has no additional benefit in Trpv3 knockout mice in the carvacrol model. Scu is a potent and selective TRPV3 channel allosteric negative modulator with an apparent affinity of 1.18 μM. Molecular docking coupled with site-direct mutagenesis and covalent modification of incorporated cysteine residues demonstrate that Scu targets the cavity formed between the pore helix and transmembrane helix S6. Moreover, Scu attenuates endogenous TRPV3 activity in human keratinocytes and inhibits carvacrol-induced proliferative and proinflammatory responses.Collectively, these data demonstrate that Scu ameliorates carvacrol-induced skin inflammation by directly inhibiting TRPV3, and TRPV3 represents a viable therapeutic target for AD treatment.
- Published
- 2022
27. MITOCHONDRIA: The dual function of the transient receptor potential melastatin 2 channels from cytomembrane to mitochondria
- Author
-
Xiao-Min Zhang, Ying Song, Xin-Yi Zhu, Wen-Jun Wang, Xu-Li Fan, and Tarek Mohamed Abd El-Aziz
- Subjects
Cell Biology ,Biochemistry - Published
- 2023
28. Investigating the structure-activity relationship of marine polycyclic batzelladine alkaloids as promising inhibitors for SARS-CoV-2 main protease (M
- Author
-
Alaa M. Elgohary, Abdo A. Elfiky, Florbela Pereira, Tarek Mohamed Abd El-Aziz, Mansour Sobeh, Reem K. Arafa, and Amr El-Demerdash
- Subjects
SARS-CoV-2 ,Health Informatics ,Molecular Dynamics Simulation ,Viral Nonstructural Proteins ,Ligands ,Antiviral Agents ,Computer Science Applications ,COVID-19 Drug Treatment ,Molecular Docking Simulation ,Structure-Activity Relationship ,Alkaloids ,Humans ,Protease Inhibitors ,Coronavirus 3C Proteases - Abstract
Over a span of two years ago, since the emergence of the first case of the novel coronavirus (SARS-CoV-2) in China, the pandemic has crossed borders causing serious health emergencies, immense economic crisis and impacting the daily life worldwide. Despite the discovery of numerous forms of precautionary vaccines along with other recently approved orally available drugs, yet effective antiviral therapeutics are necessarily needed to hunt this virus and its variants. Historically, naturally occurring chemicals have always been considered the primary source of beneficial medications. Considering the SARS-CoV-2 main protease (M
- Published
- 2022
29. Biology of Coronaviruses and Predicted Origin of SARS-CoV-2
- Author
-
Giorgio Palù, Alberto Reale, Nicolas G. Bazan, Pritam Kumar Panda, Vladimir N. Uversky, Murat Seyran, Alaa A. A. Aljabali, Samendra P. Sherchan, Gajendra Kumar Azad, Wagner Baetas-da-Cruz, Parise Adadi, Murtaza M. Tambuwala, Bruce D. Uhal, Kazuo Takayama, Ángel Serrano-Aroca, Tarek Mohamed Abd El-Aziz, Adam M. Brufsky, and Kenneth Lundstrom
- Published
- 2022
30. Non-uniform aspects of the SARS-CoV-2 intraspecies evolution reopen question of its origin
- Author
-
Sk. Sarif Hassan, Vaishnavi Kodakandla, Elrashdy M. Redwan, Kenneth Lundstrom, Pabitra Pal Choudhury, Ángel Serrano-Aroca, Gajendra Kumar Azad, Alaa A.A. Aljabali, Giorgio Palu, Tarek Mohamed Abd El-Aziz, Debmalya Barh, Bruce D. Uhal, Parise Adadi, Kazuo Takayama, Nicolas G. Bazan, Murtaza Tambuwala, Samendra P. Sherchan, Amos Lal, Gaurav Chauhan, Wagner Baetas-da-Cruz, and Vladimir N. Uversky
- Subjects
Structural Biology ,SARS-CoV-2 ,Spike Glycoprotein, Coronavirus ,Mutation ,Humans ,COVID-19 ,General Medicine ,Molecular Biology ,Biochemistry ,Pandemics - Abstract
Several hypotheses have been presented on the origin of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) from its identification as the agent causing the current coronavirus disease 19 (COVID-19) pandemic. So far, no solid evidence has been found to support any hypothesis on the origin of this virus, and the issue continue to resurface over and over again. Here we have unfolded a pattern of distribution of several mutations in the SARS-CoV-2 proteins in 24 geo-locations across different continents. The results showed an evenly uneven distribution of the unique protein variants, distinct mutations, unique frequency of common conserved residues, and mutational residues across these 24 geo-locations. Furthermore, ample mutations were identified in the evolutionarily conserved invariant regions in the SARS-CoV-2 proteins across almost all geo-locations studied. This pattern of mutations potentially breaches the law of evolutionary conserved functional units of the beta-coronavirus genus. These mutations may lead to several novel SARS-CoV-2 variants with a high degree of transmissibility and virulence. A thorough investigation on the origin and characteristics of SARS-CoV-2 needs to be conducted in the interest of science and for the preparation of meeting the challenges of potential future pandemics.
- Published
- 2022
31. Structural and Functional Characterization of a Novel Scorpion Toxin that Inhibits Na
- Author
-
Kiran, George, Diego, Lopez-Mateos, Tarek Mohamed, Abd El-Aziz, Yucheng, Xiao, Jake, Kline, Hong, Bao, Syed, Raza, James D, Stockand, Theodore R, Cummins, Luca, Fornelli, Matthew P, Rowe, Vladimir, Yarov-Yarovoy, and Ashlee H, Rowe
- Abstract
Voltage-gated sodium channel Na
- Published
- 2021
32. Marine Brominated Tyrosine Alkaloids as Promising Inhibitors of SARS-CoV-2
- Author
-
Tarek Mohamed Abd El-Aziz, Amr El-Demerdash, James D. Stockand, Afnan Hassan, and Reem K. Arafa
- Subjects
Halogenation ,medicine.medical_treatment ,Protein Data Bank (RCSB PDB) ,Pharmaceutical Science ,Organic chemistry ,Biology ,Antiviral Agents ,Article ,Virus ,Analytical Chemistry ,Structure-Activity Relationship ,Alkaloids ,QD241-441 ,Drug Discovery ,medicine ,Humans ,Structure–activity relationship ,Physical and Theoretical Chemistry ,Tyrosine ,Coronavirus 3C Proteases ,chemistry.chemical_classification ,Binding Sites ,Protease ,SARS-CoV-2 ,COVID-19 ,Isoxazoles ,molecular docking ,virtual screening ,Virology ,COVID-19 Drug Treatment ,Molecular Docking Simulation ,molecular dynamics simulation ,chemistry ,brominated tyrosine alkaloids ,Chemistry (miscellaneous) ,Docking (molecular) ,Phosphoprotein ,Spike Glycoprotein, Coronavirus ,Molecular Medicine ,Glycoprotein ,ADME/Tox - Abstract
There have been more than 150 million confirmed cases of SARS-CoV-2 since the beginning of the pandemic in 2019. By June 2021, the mortality from such infections approached 3.9 million people. Despite the availability of a number of vaccines which provide protection against this virus, the evolution of new viral variants, inconsistent availability of the vaccine around the world, and vaccine hesitancy, in some countries, makes it unreasonable to rely on mass vaccination alone to combat this pandemic. Consequently, much effort is directed to identifying potential antiviral treatments. Marine brominated tyrosine alkaloids are recognized to have antiviral potential. We test here the antiviral capacity of fourteen marine brominated tyrosine alkaloids against five different target proteins from SARS-CoV-2, including main protease (Mpro) (PDB ID: 6lu7), spike glycoprotein (PDB ID: 6VYB), nucleocapsid phosphoprotein (PDB ID: 6VYO), membrane glycoprotein (PDB ID: 6M17), and non-structural protein 10 (nsp10) (PDB ID: 6W4H). These marine alkaloids, particularly the hexabrominated compound, fistularin-3, shows promising docking interactions with predicted binding affinities (S-score = −7.78, −7.65, −6.39, −6.28, −8.84 Kcal/mol) for the main protease (Mpro) (PDB ID: 6lu7), spike glycoprotein (PDB ID: 6VYB), nucleocapsid phosphoprotein (PDB ID: 6VYO), membrane glycoprotein (PDB ID: 6M17), and non-structural protein 10 (nsp10) (PDB ID: 6W4H), respectively, where it forms better interactions with the protein pockets than the native interaction. It also shows promising molecular dynamics, pharmacokinetics, and toxicity profiles. As such, further exploration of the antiviral properties of fistularin-3 against SARS-CoV-2 is merited.
- Published
- 2021
33. An issue of concern: unique truncated ORF8 protein variants of SARS-CoV-2
- Author
-
Sk. Sarif Hassan, Vaishnavi Kodakandla, Elrashdy M. Redwan, Kenneth Lundstrom, Pabitra Pal Choudhury, Tarek Mohamed Abd El-Aziz, Kazuo Takayama, Ramesh Kandimalla, Amos Lal, Ángel Serrano-Aroca, Gajendra Kumar Azad, Alaa A.A. Aljabali, Giorgio Palù, Gaurav Chauhan, Parise Adadi, Murtaza Tambuwala, Adam M. Brufsky, Wagner Baetas-da-Cruz, Debmalya Barh, Vasco Azevedo, Nikolas G. Bazan, Bruno Silva Andrade, Raner José Santana Silva, and Vladimir N. Uversky
- Subjects
General Neuroscience ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Abstract
Open reading frame 8 (ORF8) shows one of the highest levels of variability among accessory proteins in Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the causative agent of Coronavirus Disease 2019 (COVID-19). It was previously reported that the ORF8 protein inhibits the presentation of viral antigens by the major histocompatibility complex class I (MHC-I), which interacts with host factors involved in pulmonary inflammation. The ORF8 protein assists SARS-CoV-2 in evading immunity and plays a role in SARS-CoV-2 replication. Among many contributing mutations, Q27STOP, a mutation in the ORF8 protein, defines the B.1.1.7 lineage of SARS-CoV-2, engendering the second wave of COVID-19. In the present study, 47 unique truncated ORF8 proteins (T-ORF8) with the Q27STOP mutations were identified among 49,055 available B.1.1.7 SARS-CoV-2 sequences. The results show that only one of the 47 T-ORF8 variants spread to over 57 geo-locations in North America, and other continents, which include Africa, Asia, Europe and South America. Based on various quantitative features, such as amino acid homology, polar/non-polar sequence homology, Shannon entropy conservation, and other physicochemical properties of all specific 47 T-ORF8 protein variants, nine possible T-ORF8 unique variants were defined. The question as to whether T-ORF8 variants function similarly to the wild type ORF8 is yet to be investigated. A positive response to the question could exacerbate future COVID-19 waves, necessitating severe containment measures.
- Published
- 2021
34. Autoimmunity roots of the thrombotic events after COVID-19 vaccination
- Author
-
Murtaza M. Tambuwala, Gajendra Kumar Azad, Parise Adadi, Sk. Sarif Hassan, Gaurav Chauhan, Damiano Pizzol, Amos Lal, Tarek Mohamed Abd El-Aziz, Ramesh Kandimalla, Elrashdy M. Redwan, Samendra P. Sherchan, Pabitra Pal Choudhury, Alaa A. A. Aljabali, Kenneth Lundstrom, Pritam Kumar Panda, Kazuo Takayama, Debmalya Barh, Nicolas G. Bazan, Yogendra Kumar Mishra, Nima Rezaei, Murat Seyran, Fatma Elrashdy, Vladimir N. Uversky, Ángel Serrano-Aroca, and Giorgio Palù
- Subjects
Vaccine-induced immune thrombotic thrombocytopenia ,COVID-19 Vaccines ,Deep vein ,Immunology ,Autoimmunity ,Review ,Autoimmune reaction ,medicine.disease_cause ,Viral vector ,Pathogenesis ,Immune system ,Pandemic ,medicine ,Adenoviral vector-based vaccine ,Immunology and Allergy ,Humans ,Lipid nanoparticle-mRNA-based vaccine ,business.industry ,SARS-CoV-2 ,Viral Vaccine ,Vaccination ,Vaccination/adverse effects ,COVID-19 ,Viral Vaccines ,SARS Virus ,medicine.anatomical_structure ,Severe acute respiratory syndrome-related coronavirus ,business - Abstract
Although vaccination represents the most promising way to stop or contain the coronavirus disease 2019 (COVID-19) pandemic and safety and effectiveness of available vaccines were proven, a small number of individuals who received anti-SARS-CoV-2 vaccines developed a prothrombotic syndrome. Vaccine-induced immune thrombotic thrombocytopenia (VITT) can be triggered by the adenoviral vector-based vaccine, whereas lipid nanoparticle-mRNA-based vaccines can induce rare cases of deep vein thrombosis (DVT). Although the main pathogenic mechanisms behind this rare phenomenon have not yet been identified, both host and vaccine factors might be involved, with pathology at least in part being related to the vaccine-triggered autoimmune reaction. In this review, we are considering some aspects related to pathogenesis, major risk factors, as well as peculiarities of diagnosis and treatment of this rare condition.
- Published
- 2021
35. Abstract 06: Mechanisms And Consequences Of Casein Kinase II And Ankyrin 3 Regulation Of The Epithelial Sodium Channel
- Author
-
James D. Stockand, Antonio Soares, and Tarek Mohamed Abd El-Aziz
- Subjects
inorganic chemicals ,chemistry.chemical_classification ,Epithelial sodium channel ,chemistry ,urogenital system ,Internal Medicine ,Ankyrin ,respiratory system ,Casein kinase 2 ,hormones, hormone substitutes, and hormone antagonists ,Cell biology - Abstract
Activity of the Epithelial Na+ Channel (ENaC) in the distal nephron fine-tunes renal sodium excretion. Appropriate sodium excretion is a key factor in the regulation of blood pressure. Consequently, abnormalities in ENaC function can cause hypertension. Casein Kinase II (CKII) phosphorylates ENaC. The CKII phosphorylation site in ENaC resides within a canonical “anchor” ankyrin binding motif. CKII-dependent phosphorylation of ENaC is necessary and sufficient to increase channel activity and is thought to influence channel trafficking in a manner that increases activity. We test here the hypothesis that phosphorylation of ENaC by CKII within an anchor motif is necessary for ankyrin-3 (Ank-3) regulation of the channel, which is required for normal channel locale and function, and the proper regulation of renal sodium excretion. This was addressed using a fluorescence imaging strategy combining total internal reflection fluorescence (TIRF) microscopy with fluorescence recovery after photobleaching (FRAP) to quantify ENaC expression in the plasma membrane in living cells; and electrophysiology to quantify ENaC activity in split-open collecting ducts from principal cell-specific Ank-3 knockout mice. Sodium excretion studies also were performed in parallel in this knockout mouse. In addition, we substituted a key serine residue in the consensus CKII site in β-ENaC with alanine to abrogate phosphorylation and disrupt the anchor motif. Findings show that disrupting CKII signaling decreases ENaC activity by decreasing expression in the plasma membrane. In the principal cell-specific Ank-3 KO mouse, ENaC activity and sodium excretion were significantly decreased and increased, respectively. These results are consistent with CKII phosphorylation of ENaC functioning as a “switch” that favors Ank-3 binding to increase channel activity.
- Published
- 2021
36. Questions concerning the proximal origin of SARS‐CoV‐2
- Author
-
Gajendra Kumar Azad, Murtaza M. Tambuwala, Amos Lal, Tarek Mohamed Abd El-Aziz, Damiano Pizzol, Ramesh Kandimalla, Samendra P. Sherchan, Alaa A. A. Aljabali, Nima Rezaei, Kenneth Lundstrom, Murat Seyran, Vladimir N. Uversky, Sk. Sarif Hassan, Bruce D. Uhal, Parise Adadi, Adam Brufsky, Pabitra Pal Choudhury, and Antonio G. Soares
- Subjects
2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,coronavirus ,Host tropism ,Biology ,Host Adaptation ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,Virology ,genetic variability ,fusion protein ,medicine ,Animals ,Humans ,030212 general & internal medicine ,Letters to the Editor ,Letter to the Editor ,Coronavirus ,Recombination, Genetic ,SARS-CoV-2 ,COVID-19 ,virus diseases ,respiratory system ,biochemical phenomena, metabolism, and nutrition ,respiratory tract diseases ,Viral Tropism ,Infectious Diseases ,Mutation ,Spike Glycoprotein, Coronavirus ,Tissue tropism ,RNA, Viral ,030211 gastroenterology & hepatology ,Host adaptation ,Protein Binding - Abstract
There is a consensus that Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) originated naturally from Bat coronaviruses (CoVs), in particular RaTG13. However, the SARS-CoV-2 host tropism/adaptation pattern has significant discrepancies compared to other CoVs, raising questions concerning the proximal origin of SARS-CoV-2. This article is protected by copyright. All rights reserved.
- Published
- 2020
37. Emergence of Unique SARS-CoV-2 ORF10 Variants and Their Impact on Protein Structure and Function
- Author
-
Amos Lal, Tarek Mohamed Abd El-Aziz, Kazuo Takayama, Gaurav Chauhan, Elrashdy M. Redwan, Vladimir N. Uversky, Pallab Basu, Ángel Serrano-Aroca, Pabitra Pal Choudhury, Kenneth Lundstrom, Ramesh Kandimalla, Parise Adadi, Giorgio Palù, Sk. Sarif Hassan, Gajendra Kumar Azad, Murtaza M. Tambuwala, Debmalya Barh, Samendra P. Sherchan, and Alaa A. A. Aljabali
- Subjects
Protein structure and function ,RBX1 ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Virulence ,biology_other ,Biology ,Biochemistry ,Virus ,Article ,Open Reading Frames ,Viral Proteins ,Structural Biology ,ORF10 ,Pandemic ,Co-occurring mutations ,Humans ,Molecular Biology ,Genetics ,Host Microbial Interactions ,SARS-CoV-2 ,virus diseases ,PPT1 ,COVID-19 ,General Medicine ,Open reading frame ,And ubiquitin ligase complex ,Ubiquitin ligase complex ,Mutation ,Intrinsic protein disorder - Abstract
The devastating impact of the ongoing coronavirus disease 2019 (COVID-19) on public health, caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has made targeting the COVID-19 pandemic a top priority in medical research and pharmaceutical development. Surveillance of SARS-CoV-2 mutations is essential for the comprehension of SARS-CoV-2 variant diversity and their impact on virulence and pathogenicity. The SARS-CoV-2 open reading frame 10 (ORF10) protein interacts with multiple human proteins CUL2, ELOB, ELOC, MAP7D1, PPT1, RBX1, THTPA, TIMM8B, and ZYG11B expressed in lung tissue. Mutations and co-occurring mutations in the emerging SARS-CoV-2 ORF10 variants are expected to impact the severity of the virus and its associated consequences. In this article, we highlight 128 single mutations and 35 co-occurring mutations in the unique SARS-CoV-2 ORF10 variants. The possible predicted effects of these mutations and co-occurring mutations on the secondary structure of ORF10 variants and host protein interactomes are presented. The findings highlight the possible effects of mutations and co-occurring mutations on the emerging 140 ORF10 unique variants from secondary structure and intrinsic protein disorder perspectives.
- Published
- 2021
38. Mechanisms and consequences of casein kinase II and ankyrin-3 regulation of the epithelial Na+ channel
- Author
-
Nina Boiko, Tarek Mohamed Abd El-Aziz, Antonio G. Soares, Amanpreet Kaur, Jonathan M. Berman, James D. Stockand, Crystal R. Archer, and Elena Mironova
- Subjects
Male ,0301 basic medicine ,Epithelial sodium channel ,Physiology ,Membrane trafficking ,030204 cardiovascular system & hematology ,Kidney ,Mice ,0302 clinical medicine ,Chlorocebus aethiops ,Ankyrin ,Phosphorylation ,Casein Kinase II ,Mice, Knockout ,chemistry.chemical_classification ,Multidisciplinary ,Chemistry ,respiratory system ,Cell biology ,Ion channels ,COS Cells ,Hypertension ,Knockout mouse ,Medicine ,Female ,Casein kinase 2 ,hormones, hormone substitutes, and hormone antagonists ,Signal Transduction ,Ankyrins ,inorganic chemicals ,Science ,Neurophysiology ,Sodium channels ,Kinases ,CHO Cells ,Ankyrin binding ,Article ,03 medical and health sciences ,Cricetulus ,Animals ,Protein Interaction Domains and Motifs ,Epithelial Sodium Channels ,urogenital system ,Sodium ,Membrane Transport Proteins ,Fluorescence recovery after photobleaching ,Biological Transport ,Nephrons ,Cardiovascular biology ,Cellular neuroscience ,030104 developmental biology ,Amino Acid Substitution ,Renal sodium excretion - Abstract
Activity of the Epithelial Na+ Channel (ENaC) in the distal nephron fine-tunes renal sodium excretion. Appropriate sodium excretion is a key factor in the regulation of blood pressure. Consequently, abnormalities in ENaC function can cause hypertension. Casein Kinase II (CKII) phosphorylates ENaC. The CKII phosphorylation site in ENaC resides within a canonical “anchor” ankyrin binding motif. CKII-dependent phosphorylation of ENaC is necessary and sufficient to increase channel activity and is thought to influence channel trafficking in a manner that increases activity. We test here the hypothesis that phosphorylation of ENaC by CKII within an anchor motif is necessary for ankyrin-3 (Ank-3) regulation of the channel, which is required for normal channel locale and function, and the proper regulation of renal sodium excretion. This was addressed using a fluorescence imaging strategy combining total internal reflection fluorescence (TIRF) microscopy with fluorescence recovery after photobleaching (FRAP) to quantify ENaC expression in the plasma membrane in living cells; and electrophysiology to quantify ENaC activity in split-open collecting ducts from principal cell-specific Ank-3 knockout mice. Sodium excretion studies also were performed in parallel in this knockout mouse. In addition, we substituted a key serine residue in the consensus CKII site in β-ENaC with alanine to abrogate phosphorylation and disrupt the anchor motif. Findings show that disrupting CKII signaling decreases ENaC activity by decreasing expression in the plasma membrane. In the principal cell-specific Ank-3 KO mouse, ENaC activity and sodium excretion were significantly decreased and increased, respectively. These results are consistent with CKII phosphorylation of ENaC functioning as a “switch” that favors Ank-3 binding to increase channel activity.
- Published
- 2021
39. Identification and Characterization of Novel Proteins from Arizona Bark Scorpion Venom That Inhibit Nav1.8, a Voltage-Gated Sodium Channel Regulator of Pain Signaling
- Author
-
Jake T. Kline, Klaus D. Linse, Tarek Mohamed Abd El-Aziz, Theodore R. Cummins, Harold Gridley, Darin R. Rokyta, Alyse V. Heaston, Luca Fornelli, Ashlee H. Rowe, James D. Stockand, Yucheng Xiao, and Micaiah J. Ward
- Subjects
Proteomics ,0301 basic medicine ,Health, Toxicology and Mutagenesis ,Onychomys torridus ,Pain ,Scorpion Venoms ,Venom ,Voltage-Gated Sodium Channels ,Gating ,Toxicology ,complex mixtures ,Article ,Centruroides sculpturatus ,drug discovery ,NAV1.8 Voltage-Gated Sodium Channel ,Scorpions ,Mice ,03 medical and health sciences ,0302 clinical medicine ,voltage-gated sodium channel ,Animals ,Tyrosine ,hyperpolarization ,Nav1.8 ,chemistry.chemical_classification ,biology ,Sodium channel ,NAV1.7 Voltage-Gated Sodium Channel ,Arizona ,neurotoxin ,biology.organism_classification ,Arizona bark scorpion ,Parabuthus ,Amino acid ,pain signaling ,bioactive proteins ,030104 developmental biology ,Biochemistry ,chemistry ,Plant Bark ,scorpion venom ,Medicine ,Peptides ,030217 neurology & neurosurgery ,Sodium Channel Blockers - Abstract
The voltage-gated sodium channel Nav1.8 is linked to neuropathic and inflammatory pain, highlighting the potential to serve as a drug target. However, the biophysical mechanisms that regulate Nav1.8 activation and inactivation gating are not completely understood. Progress has been hindered by a lack of biochemical tools for examining Nav1.8 gating mechanisms. Arizona bark scorpion (Centruroides sculpturatus) venom proteins inhibit Nav1.8 and block pain in grasshopper mice (Onychomys torridus). These proteins provide tools for examining Nav1.8 structure–activity relationships. To identify proteins that inhibit Nav1.8 activity, venom samples were fractioned using liquid chromatography (reversed-phase and ion exchange). A recombinant Nav1.8 clone expressed in ND7/23 cells was used to identify subfractions that inhibited Nav1.8 Na+ current. Mass-spectrometry-based bottom-up proteomic analyses identified unique peptides from inhibitory subfractions. A search of the peptides against the AZ bark scorpion venom gland transcriptome revealed four novel proteins between 40 and 60% conserved with venom proteins from scorpions in four genera (Centruroides, Parabuthus, Androctonus, and Tityus). Ranging from 63 to 82 amino acids, each primary structure includes eight cysteines and a “CXCE” motif, where X = an aromatic residue (tryptophan, tyrosine, or phenylalanine). Electrophysiology data demonstrated that the inhibitory effects of bioactive subfractions can be removed by hyperpolarizing the channels, suggesting that proteins may function as gating modifiers as opposed to pore blockers.
- Published
- 2021
40. The Search for Natural and Synthetic Inhibitors That Would Complement Antivenoms as Therapeutics for Snakebite Envenoming
- Author
-
Rachel H. Clare, Teresa Escalante, Alexandra Rucavado, Tarek Mohamed Abd El-Aziz, Laura-Oana Albulescu, José María Gutiérrez, and Nicholas R. Casewell
- Subjects
0301 basic medicine ,Health, Toxicology and Mutagenesis ,Antivenom ,Snake Bites ,Review ,varespladib ,Pharmacology ,Toxicology ,metalloproteinases ,World health ,qw_805 ,phospholipases A2 ,03 medical and health sciences ,Recombinant antibodies ,three finger toxins ,inhibitors ,Animals ,Humans ,Medicine ,Low-Level Light Therapy ,snake venom ,qw_630 ,Clinical Trials as Topic ,antivenom ,030102 biochemistry & molecular biology ,Antivenins ,business.industry ,peptidomimetic hydroxamates ,030104 developmental biology ,Research Design ,Snake venom ,business ,Snake Venoms ,wd_410 - Abstract
A global strategy, under the coordination of the World Health Organization, is being unfolded to reduce the impact of snakebite envenoming. One of the pillars of this strategy is to ensure safe and effective treatments. The mainstay in the therapy of snakebite envenoming is the administration of animal-derived antivenoms. In addition, new therapeutic options are being explored, including recombinant antibodies and natural and synthetic toxin inhibitors. In this review, snake venom toxins are classified in terms of their abundance and toxicity, and priority actions are being proposed in the search for snake venom metalloproteinase (SVMP), phospholipase A2 (PLA2), three-finger toxin (3FTx), and serine proteinase (SVSP) inhibitors. Natural inhibitors include compounds isolated from plants, animal sera, and mast cells, whereas synthetic inhibitors comprise a wide range of molecules of a variable chemical nature. Some of the most promising inhibitors, especially SVMP and PLA2 inhibitors, have been developed for other diseases and are being repurposed for snakebite envenoming. In addition, the search for drugs aimed at controlling endogenous processes generated in the course of envenoming is being pursued. The present review summarizes some of the most promising developments in this field and discusses issues that need to be considered for the effective translation of this knowledge to improve therapies for tackling snakebite envenoming.
- Published
- 2021
41. Non-Uniform Aspects of SARS-CoV-2 Intraspecies Evolution Reopen Questions on Its Origin
- Author
-
Nicolas G. Bazan, Gajendra Kumar Azad, Debmalya Barh, Alaa A. A. Aljabali, Vladimir N. Uversky, Wagner Baetas-da-Cruz, Kazuo Takayama, Bruce D. Uhal, Giorgio Palù, Parise Adadi, Kenneth Lundstrom, Amos Lal, Tarek Mohamed Abd El-Aziz, Murtaza M. Tambuwala, Ángel Serrano-Aroca Aroca, Pabitra Pal Choudhury, Gaurav Chauhan, Vaishnavi Kodakandla, Samendra P. Sherchan, Sk. Sarif Hassan, and Elrashdy M. Redwan
- Subjects
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,viruses ,biochemistry ,Biology ,Virology - Abstract
Several hypotheses have been presented on the origin of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from its identification as the agent causing the current coronavirus disease 19 (COVID-19) pandemic. So far, no hypothesis has managed to identify the origin, and the issue has resurfaced. Here we have unfolded a pattern of distribution of several mutations in the SARS-CoV-2 proteins across different continents comprising 24 geo-locations. The results showed an evenly uneven distribution of unique protein variants, distinct mutations, unique frequency of common conserved residues, and mutational residues across the 24 geo-locations. Furthermore, ample mutations were identified in the evolutionarily conserved invariant regions in the SARS-CoV-2 proteins across almost all geo-locations we have considered. This pattern of mutations potentially breaches the law of evolutionary conserved functional units of the beta-coronavirus genus. These mutations may lead to several novel SARS-CoV-2 variants with a high degree of transmissibility and virulence. A thorough investigation on the origin and characteristics of SARS-CoV-2 needs to be conducted in the interest of science and to be prepared to meet the challenges of potential future pandemics.
- Published
- 2021
42. Carbon-based nanomaterials:promising antiviral agents to combat COVID-19 in the microbial-resistant era
- Author
-
Alberto Tuñón-Molina, Parise Adadi, Vladimir N. Uversky, Debmalya Barh, Kenneth Lundstrom, Kazuo Takayama, Murtaza M. Tambuwala, Alaa A. A. Aljabali, Gaurav Chauhan, Ramesh Kandimalla, Amos Lal, Tarek Mohamed Abd El-Aziz, Samendra P. Sherchan, Adam Brufsky, Sk. Sarif Hassan, Bruce D. Uhal, Pabitra Pal Choudhury, Nicolas G. Bazan, Elrashdy M. Redwan, Yogendra Kumar Mishra, Murat Seyran, Ángel Serrano-Aroca, and Giorgio Palù
- Subjects
Pneumonia, Viral ,General Physics and Astronomy ,02 engineering and technology ,Disease ,Review ,tissue regeneration ,Antiviral Agents/pharmacology ,010402 general chemistry ,medicine.disease_cause ,01 natural sciences ,Antiviral Agents ,Microbiology ,antiviral properties ,Antibiotic resistance ,carbon dots ,medicine ,pneumonia ,Humans ,General Materials Science ,Mode of action ,Coronavirus ,biology ,business.industry ,SARS-CoV-2 ,fullerene ,graphene ,General Engineering ,COVID-19 ,Pneumonia, Viral/drug therapy ,021001 nanoscience & nanotechnology ,medicine.disease ,Antimicrobial ,biology.organism_classification ,Carbon ,0104 chemical sciences ,Viral pneumonia ,carbon-based nanomaterials ,0210 nano-technology ,business ,Pneumonia (non-human) ,Bacteria - Abstract
Therapeutic options for the highly pathogenic human severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causing the current pandemic coronavirus disease (COVID-19) are urgently needed. COVID-19 is associated with viral pneumonia and acute respiratory distress syndrome causing significant morbidity and mortality. The proposed treatments for COVID-19 have shown little or no effect in the clinic so far. Additionally, bacterial and fungal pathogens contribute to the SARS-CoV-2-mediated pneumonia disease complex. The antibiotic resistance in pneumonia treatment is increasing at an alarming rate. Therefore, carbon-based nanomaterials (CBNs), such as fullerene, carbon dots, graphene, and their derivatives constitute a promising alternative due to their wide-spectrum antimicrobial activity, biocompatibility, biodegradability, and capacity to induce tissue regeneration. Furthermore, the antimicrobial mode of action is mainly physical (e.g., membrane distortion), characterized by a low risk of antimicrobial resistance. In this Review, we evaluated the literature on the antiviral activity and broad-spectrum antimicrobial properties of CBNs. CBNs had antiviral activity against 13 enveloped positive-sense single-stranded RNA viruses, including SARS-CoV-2. CBNs with low or no toxicity to humans are promising therapeutics against the COVID-19 pneumonia complex with other viruses, bacteria, and fungi, including those that are multidrug-resistant.
- Published
- 2021
43. Implications Derived from S-Protein Variants of SARS-CoV-2 from Six Continents
- Author
-
Parise Adadi, Elrashdy M. Redwan, Alaa A. A. Aljabali, Bruce D. Uhal, Murat Seyran, Vladimir N. Uversky, Adam Brufsky, Samendra P. Sherchan, Gajendra Kumar Azad, Sk. Sarif Hassan, Ramesh Kandimalla, Giorgio Palù, Pabitra Pal Choudhury, Ángel Serrano-Aroca, Amos Lal, Debmalya Barh, Tarek Mohamed Abd El-Aziz, Murtaza M. Tambuwala, Kenneth Lundstrom, Nima Rezaei, and Kazuo Takayama
- Subjects
Infectivity ,Genetics ,Vaccination ,Transmission (mechanics) ,Coronavirus disease 2019 (COVID-19) ,law ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pandemic ,Biology ,Phylogenetic relationship ,Virus ,law.invention - Abstract
Spike (S) proteins of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are critical determinants of the infectivity and antigenicity of the virus. Several mutations in the spike protein of SARS-CoV-2 have already been detected, and their effect in immune system evasion and enhanced transmission as a cause of increased morbidity and mortality are being investigated. From pathogenic and epidemiological perspectives, spike proteins are of prime interest to researchers. This study focused on the unique variants of S proteins from six continents Asia, Africa, Europe, Oceania, South America, and North America. In comparison to the other five continents, Africa (29.065%) had the highest percentage of unique S proteins. Notably, only North America had 87% (14046) of the total (16143) specific S proteins available in the NCBI database(across all continents). Based on the amino acid frequency distributions in the S protein variants from all the continents, the phylogenetic relationship implies that unique S proteins from North America were significantly different from those of the other five continents. Overtime, the unique variants originating from North America are most likely to spread to the other geographic locations through international travel or naturally by emerging mutations. Hence it is suggested that restriction of international travel should be considered, and massive vaccination as an utmost measure to combat the spread of COVID-19 pandemic. It is also further suggested that the efficacy of existing vaccines and future vaccine development must be reviewed with careful scrutiny, and if needed, further re-engineered based on requirements dictated by new emerging S protein variants.
- Published
- 2021
44. Mechanisms and Consequences of Casein Kinase II regulation of the Epithelial Sodium Channel
- Author
-
Elena Mironova, Antonio G. Soares, James D. Stockand, and Tarek Mohamed Abd El-Aziz
- Subjects
Epithelial sodium channel ,Chemistry ,Genetics ,Casein kinase 2 ,Molecular Biology ,Biochemistry ,Biotechnology ,Cell biology - Published
- 2021
45. Gs‐DREADD Regulation of ENaC
- Author
-
Elena Mironova, Tarek Mohamed Abd El-Aziz, Antonio G. Soares, and James D. Stockand
- Subjects
Epithelial sodium channel ,Chemistry ,Genetics ,Molecular Biology ,Biochemistry ,Biotechnology ,Cell biology - Published
- 2021
46. The mechanism behind flaring/triggering of autoimmunity disorders associated with COVID-19
- Author
-
Vladimir N. Uversky, Wagner Baetas-da-Cruz, Murtaza M. Tambuwala, Elrashdy M. Redwan, Ramesh Kandimalla, Nima Rezaei, Gaurav Chauhan, Alaa A. A. Aljabali, Mohammed F. Alghamdi, S K Sarif Hassan, Gajendra Kumar Azad, Pritam Kumar Panda, Kazuo Takayama, Kenneth Lundstrom, Parise Adadi, Damiano Pizzol, Samendra P. Sherchan, Amos Lal, Tarek Mohamed Abd El-Aziz, Diksha Attrish, Bruce D. Uhal, Debmalya Barh, Yogendra Kumar Mishra, Adam Brufsky, Murat Seyran, Nicolas G. Bazan, Ángel Serrano-Aroca, Giorgio Palù, and Pabitra Pal Choudhury
- Subjects
2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Immunology ,Autoimmunity ,medicine.disease_cause ,Article ,Autoimmune Diseases ,Autoimmunity disorders ,Autoimmune response ,Autoimmune disease ,medicine ,Immunology and Allergy ,Humans ,Rheumatoid arthritis ,business.industry ,Mechanism (biology) ,SARS-CoV-2 ,Comment ,COVID-19 ,medicine.disease ,business - Published
- 2021
47. Case Report: Recent Case Reports of Levant Blunt-Nosed Viper Macrovipera lebetina obtusa Snakebites in Iran
- Author
-
Mahmoud I. Shoulkamy, Seyed Mahdi Kazemi, Tarek Mohamed Abd El-Aziz, Chengbo Long, and Ahmed Al-Sabi
- Subjects
medicine.medical_specialty ,VIPeR ,biology ,business.industry ,medicine.medical_treatment ,Articles ,biology.organism_classification ,Dermatology ,Fasciotomy ,Infectious Diseases ,medicine.anatomical_structure ,Blunt ,Forearm ,Virology ,Edema ,medicine ,Itching ,Parasitology ,medicine.symptom ,Envenomation ,business ,Macrovipera lebetina - Abstract
Envenomation and death resulting from snakebites represent a significant public health problem worldwide, particularly in tropical and subtropical regions. The WHO has defined snakebite as a neglected tropical health concern. Bites from Macrovipera lebetina obtusa usually cause life-threatening systemic hemodynamic disturbances, reduced functionality of the kidneys, and other serious symptoms, including hypotension shock, edema, and tissue necrosis, at the bite site. Herein, we highlight five cases of M. l. obtusa envenomation that presented with wide-ranging manifestations. Many recovered cases were left with long-term musculoskeletal disabilities. In a particular case, a 15-year-old male patient was envenomed in his palm by an 80-cm M. l. obtusa. Within 12 hours, swelling extended to near the shoulder. Fasciotomy was performed on the forearm and part of the upper arm of this patient. Symptoms of severe localized pain and swelling, dizziness, weakness, low blood pressure, and itching around the bite area were documented. The patient remained in the hospital for 13 days.
- Published
- 2021
48. Urgent Need for Field Surveys of Coronaviruses in Southeast Asia to Understand the SARS-CoV-2 Phylogeny and Risk Assessment for Future Outbreaks
- Author
-
Parise Adadi, Sk. Sarif Hassan, Damiano Pizzol, Ramesh Kandimalla, Nima Rezaei, Alaa A. A. Aljabali, Pabitra Pal Choudhury, Kenneth Lundstrom, Giorgio Palù, Shinjini Ghosh, Adam Brufsky, Diksha Attrish, Amos Lal, Tarek Mohamed Abd El-Aziz, Murtaza M. Tambuwala, Samendra P. Sherchan, Bruce D. Uhal, Gajendra Kumar Azad, Vladimir N. Uversky, Wagner Baetas-da-Cruz, and Murat Seyran
- Subjects
0301 basic medicine ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,viruses ,030106 microbiology ,lcsh:QR1-502 ,Genome, Viral ,Biology ,medicine.disease_cause ,Risk Assessment ,Biochemistry ,lcsh:Microbiology ,Disease Outbreaks ,Southeast asia ,Betacoronavirus ,03 medical and health sciences ,Phylogenetics ,Chiroptera ,medicine ,Animals ,Humans ,Pangolins ,Amino Acid Sequence ,Molecular Biology ,Asia, Southeastern ,Phylogeny ,Coronavirus ,SARS-CoV-2 ,COVID-19 ,Outbreak ,virus diseases ,respiratory system ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Virology ,respiratory tract diseases ,Editorial ,030104 developmental biology ,n/a ,Spike Glycoprotein, Coronavirus ,Risk assessment - Abstract
Phylogenetic analysis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on a single isolate of bat coronaviruses (bat CoVs) which does not adequately represent genetically related coronaviruses (CoVs) [...]
- Published
- 2021
49. Notable sequence homology of the ORF10 protein introspects the architecture of SARS-CoV-2
- Author
-
Ramesh Kandimalla, Vladimir N. Uversky, Kazuo Takayama, Wagner Baetas-da-Cruz, Gajendra Kumar Azad, Antonio G. Soares, Diksha Attrish, Bruce D. Uhal, Damiano Pizzol, Giorgio Palù, Murat Seyran, Parise Adadi, Kenneth Lundstrom, Nima Rezaei, Amos Lal, Tarek Mohamed Abd El-Aziz, Shinjini Ghosh, Ángel Serrano-Aroca, Adam Brufsky, Alaa A. A. Aljabali, Murtaza M. Tambuwala, Debmalya Barh, Pabitra Pal Choudhury, Samendra P. Sherchan, and Sk. Sarif Hassan
- Subjects
Antigenicity ,Intrinsic disorder ,viruses ,Epitopes, T-Lymphocyte ,Sequence Homology ,02 engineering and technology ,Genome, Viral ,Biology ,Viral Nonstructural Proteins ,medicine.disease_cause ,Biochemistry ,Homology (biology) ,Epitope ,Article ,Pangolin-CoV-2020 ,03 medical and health sciences ,Open Reading Frames ,Viral Proteins ,Structural Biology ,ORF10 ,medicine ,Humans ,Tyrosine ,skin and connective tissue diseases ,Molecular Biology ,030304 developmental biology ,Coronavirus ,chemistry.chemical_classification ,0303 health sciences ,Mutation ,SARS-CoV-2 ,virus diseases ,COVID-19 ,General Medicine ,021001 nanoscience & nanotechnology ,Molecular biology ,Amino acid ,respiratory tract diseases ,Open reading frame ,chemistry ,Spike Glycoprotein, Coronavirus ,0210 nano-technology ,Mutations - Abstract
The current Coronavirus Disease 19 (COVID-19) pandemic, caused by Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) shows similar pathology to MERS and SARS-CoV, with a current estimated fatality rate of 1.4%. Open reading frame 10 (ORF10) is a unique SARS-CoV-2 accessory protein, which contains eleven cytotoxic T lymphocyte (CTL) epitopes each of nine amino acids in length. Twenty-two unique SARS-CoV-2 ORF10 variants have been identified based on missense mutations found in sequence databases. Some of these mutations are predicted to decrease the stability of ORF10 in silico physicochemical and structural comparative analyses were carried out on SARS-CoV-2 and Pangolin-CoV ORF10 proteins, which share 97.37% amino acid (aa) homology. Though there is a high degree of ORF10 protein similarity of SARS-CoV-2 and Pangolin-CoV, there are differences of these two ORF10 proteins related to their sub-structure (loop/coil region), solubility, antigenicity and shift from strand to coil at aa position 26 (tyrosine). SARS-CoV-2 ORF10, which is apparently expressed in vivo since reactive T cell clones are found in convalescent patients should be monitored for changes which could correlate with the pathogenesis of COVID-19.
- Published
- 2021
50. Deficiency of ROS-Activated TRPM2 Channel Protects Neurons from Cerebral Ischemia-Reperfusion Injury through Upregulating Autophagy
- Author
-
Fangfang Li, Tarek Mohamed Abd El-Aziz, Min Xu, Lin-Hua Jiang, Xingyu Liu, Xupang Hu, Lin Lu, Wei Yang, Jianguo Niu, Yi Zhang, Qiuyuan Fang, and Lijuan Wu
- Subjects
0301 basic medicine ,Aging ,Article Subject ,Ischemia ,TRPM Cation Channels ,Apoptosis ,AMP-Activated Protein Kinases ,Mitochondrion ,Biochemistry ,Brain Ischemia ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Autophagy ,medicine ,Animals ,TRPM2 ,PI3K/AKT/mTOR pathway ,Mice, Knockout ,Neurons ,chemistry.chemical_classification ,Reactive oxygen species ,QH573-671 ,TOR Serine-Threonine Kinases ,AMPK ,Cell Biology ,General Medicine ,medicine.disease ,Rats ,Cell biology ,Mice, Inbred C57BL ,Oxidative Stress ,Neuroprotective Agents ,030104 developmental biology ,chemistry ,Reperfusion Injury ,Reactive Oxygen Species ,Cytology ,Reperfusion injury ,030217 neurology & neurosurgery ,Signal Transduction ,Research Article - Abstract
Cerebral ischemia-reperfusion (I-R) transiently increased autophagy by producing excessively reactive oxygen species (ROS); on the other hand, activated autophagy would remove ROS-damaged mitochondria and proteins, which led to cell survival. However, the regulation mechanism of autophagy activity during cerebral I-R is still unclear. In this study, we found that deficiency of the TRPM2 channel which is a ROS sensor significantly decreased I-R-induced neuronal damage. I-R transiently increased autophagy activity both in vitro and in vivo. More importantly, TRPM2 deficiency decreased I-R-induced neurological deficit score and infarct volume. Interestingly, our results indicated that TRPM2 deficiency could further activate AMPK rather than Beclin1 activity, suggesting that TRPM2 inhibits autophagy by regulating the AMPK/mTOR pathway in I-R. In conclusion, our study reveals that ROS-activated TRPM2 inhibits autophagy by downregulating the AMPK/mTOR pathway, which results in neuronal death induced by cerebral I-R, further supporting that TRPM2 might be a potential drug target for cerebral ischemic injury therapy.
- Published
- 2021
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.