1. Whole-Transcriptome Analysis Reveals Potential CeRNA Regulatory Mechanism in Takifugu rubripes against Cryptocaryon irritans Infection.
- Author
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Xia, Yuqing, Yu, Xiaoqing, Yuan, Zhen, Yang, Yi, and Liu, Ying
- Subjects
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COMPETITIVE endogenous RNA , *CRYPTOCARYON irritans , *NON-coding RNA , *MARINE fishes , *IMMUNOREGULATION - Abstract
Simple Summary: Cryptocaryon irritans is a primitive ciliate that parasitizes the skin of marine fish and can cause illness or even death in Fugu. In this study, we revealed an immune regulatory network of genes and non-coding RNAs co-modulating competing endogenous RNAs. Potential biomarkers of Fugu infection with Cryptocaryon irritans were analyzed by bioinformatics. Of these, the regulatory network showed that the LOC105418663-circ_0000361-fre-miR-204a-fzd3a ceRNA axis was potentially involved in modulating the immune response of Fugu against Cryptocaryon irritans infection. Our research results have laid a theoretical foundation for a deeper understanding of the immune mechanism of Fugu and proposed new treatment and prevention measures for resisting Cryptocaryon irritans infection. Cryptocaryon irritans (C. irritans) is a proto-ciliate parasite that infects marine fishes, including the cultured species Takifugu rubripes (T. rubripes), causing disease and potential mortality. In host organisms, infection by parasites triggers an immune response that is modulated by regulatory elements including proteins and non-coding RNAs. In this study, the whole transcriptome RNA sequencing of T. rubripes gill tissue before and after infection with C. irritans was performed to reveal the competitive endogenous RNA (ceRNA) regulatory network. Histomorphology revealed gill segment swelling and parasitic invasion in the infected group. The analysis identified 18 differentially expressed miRNAs (DEMs), 214 lncRNAs (DELs), 2501 genes (DEGs), and 7 circRNAs (DECs) in the infected group. Gene Ontology (GO) enrichment analysis revealed that these genes were notably enriched in the Wnt signaling pathway and mTOR signaling pathway. The co-expression networks (lncRNA/circRNA-miRNA-mRNA) were constructed based on correlation analysis of the differentially expressed RNAs. Further analysis suggested that the LOC105418663-circ_0000361-fru-miR-204a-fzd3a ceRNA axis was potentially involved in the regulation of immune responses against C. irritans infection. Finally, the expression levels of DEG, DEL, and DEM were validated. This study reveals the regulatory mechanism of a candidate ceRNA network, providing insights into the potential mechanism of T. rubripes' infection with C. irritans. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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