1. Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL
- Author
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Shigeyuki Inoue, Ayumi Yamashita, Tetsunari Kimura, Yuki Kato, Minoru Kubo, Takashi Kameshima, Hisashi Naitow, Takumi Noguchi, Takaki Hatsui, Tomohiro Sakamoto, Kensuke Tono, Yoshiki Nakajima, Osamu Nureki, Makina Yabashi, Taiki Motomura, Yasufumi Umena, Takamitsu Nakano, Michihiro Sugahara, Takashi Nomura, Jian Ren Shen, Tetsuya Ishikawa, Michihiro Suga, Shinichiro Yonekura, Rie Tanaka, J. Chen, Yasumasa Joti, Keitaro Yamashita, Eriko Nango, Yoshinori Matsuura, Mamoru Suzuki, Tetsuya Masuda, Takanori Nakane, Fusamichi Akita, Long Jiang Yu, Makoto Nakabayashi, Masaki Yamamoto, Takahiro Yamane, and So Iwata
- Subjects
Models, Molecular ,Time Factors ,Light ,Proton ,Photosystem II ,Synchrotron radiation ,Electrons ,02 engineering and technology ,Electron ,Cyanobacteria ,010402 general chemistry ,01 natural sciences ,Nonheme Iron Proteins ,Electron Transport ,Cluster (physics) ,Molecule ,Manganese ,Crystallography ,Multidisciplinary ,Fourier Analysis ,Chemistry ,Lasers ,Resolution (electron density) ,Temperature ,Photosystem II Protein Complex ,Water ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Oxygen ,Femtosecond ,Biocatalysis ,Protons ,0210 nano-technology - Abstract
Photosystem II (PSII) is a huge membrane-protein complex consisting of 20 different subunits with a total molecular mass of 350 kDa for a monomer. It catalyses light-driven water oxidation at its catalytic centre, the oxygen-evolving complex (OEC). The structure of PSII has been analysed at 1.9 Å resolution by synchrotron radiation X-rays, which revealed that the OEC is a Mn4CaO5 cluster organized in an asymmetric, 'distorted-chair' form. This structure was further analysed with femtosecond X-ray free electron lasers (XFEL), providing the 'radiation damage-free' structure. The mechanism of O=O bond formation, however, remains obscure owing to the lack of intermediate-state structures. Here we describe the structural changes in PSII induced by two-flash illumination at room temperature at a resolution of 2.35 Å using time-resolved serial femtosecond crystallography with an XFEL provided by the SPring-8 ångström compact free-electron laser. An isomorphous difference Fourier map between the two-flash and dark-adapted states revealed two areas of apparent changes: around the QB/non-haem iron and the Mn4CaO5 cluster. The changes around the QB/non-haem iron region reflected the electron and proton transfers induced by the two-flash illumination. In the region around the OEC, a water molecule located 3.5 Å from the Mn4CaO5 cluster disappeared from the map upon two-flash illumination. This reduced the distance between another water molecule and the oxygen atom O4, suggesting that proton transfer also occurred. Importantly, the two-flash-minus-dark isomorphous difference Fourier map showed an apparent positive peak around O5, a unique μ4-oxo-bridge located in the quasi-centre of Mn1 and Mn4 (refs 4,5). This suggests the insertion of a new oxygen atom (O6) close to O5, providing an O=O distance of 1.5 Å between these two oxygen atoms. This provides a mechanism for the O=O bond formation consistent with that proposed previously
- Published
- 2017
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