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Deep learning has shown tremendous progress in a wide range of digital pathology and medical image classification tasks. Its integration into safe clinical decision-making support requires robust and reliable models. However, real-world data comes with diversities that often lie outside the intended source distribution. Moreover, when test samples are dramatically different, clinical decision-making is greatly affected. Quantifying predictive uncertainty in models is crucial for well-calibrated predictions and determining when (or not) to trust a model. Unfortunately, many works have overlooked the importance of predictive uncertainty estimation. This paper evaluates whether predictive uncertainty estimation adds robustness to deep learning-based diagnostic decision-making systems. We investigate the effect of various carcinoma distribution shift scenarios on predictive performance and calibration. We first systematically investigate three popular methods for improving predictive uncertainty: Monte Carlo dropout, deep ensemble, and few-shot learning on lung adenocarcinoma classification as a primary disease in whole slide images. Secondly, we compare the effectiveness of the methods in terms of performance and calibration under clinically relevant distribution shifts such as in-distribution shifts comprising primary disease sub-types and other characterization analysis data; out-of-distribution shifts comprising well-differentiated cases, different organ origin, and imaging modality shifts. While studies on uncertainty estimation exist, to our best knowledge, no rigorous large-scale benchmark compares predictive uncertainty estimation including these dataset shifts for lung carcinoma classification., Comment: 17 pages, 2 figures, 5 tables

Learning with a limited number of labeled data is a central problem in real-world applications of machine learning, as it is often expensive to obtain annotations. To deal with the scarcity of labeled data, transfer learning is a conventional approach; it suggests to learn a transferable knowledge by training a neural network from multiple other sources. In this paper, we investigate transfer learning of tabular tasks, which has been less studied and successful in the literature, compared to other domains, e.g., vision and language. This is because tables are inherently heterogeneous, i.e., they contain different columns and feature spaces, making transfer learning difficult. On the other hand, recent advances in natural language processing suggest that the label scarcity issue can be mitigated by utilizing in-context learning capability of large language models (LLMs). Inspired by this and the fact that LLMs can also process tables within a unified language space, we ask whether LLMs can be effective for tabular transfer learning, in particular, under the scenarios where the source and target datasets are of different format. As a positive answer, we propose a novel tabular transfer learning framework, coined Prompt to Transfer (P2T), that utilizes unlabeled (or heterogeneous) source data with LLMs. Specifically, P2T identifies a column feature in a source dataset that is strongly correlated with a target task feature to create examples relevant to the target task, thus creating pseudo-demonstrations for prompts. Experimental results demonstrate that P2T outperforms previous methods on various tabular learning benchmarks, showing good promise for the important, yet underexplored tabular transfer learning problem. Code is available at https://github.com/jaehyun513/P2T., Comment: COLM 2024

Learning effective representations from raw data is crucial for the success of deep learning methods. However, in the tabular domain, practitioners often prefer augmenting raw column features over using learned representations, as conventional tree-based algorithms frequently outperform competing approaches. As a result, feature engineering methods that automatically generate candidate features have been widely used. While these approaches are often effective, there remains ambiguity in defining the space over which to search for candidate features. Moreover, they often rely solely on validation scores to select good features, neglecting valuable feedback from past experiments that could inform the planning of future experiments. To address the shortcomings, we propose a new tabular learning framework based on large language models (LLMs), coined Optimizing Column feature generator with decision Tree reasoning (OCTree). Our key idea is to leverage LLMs' reasoning capabilities to find good feature generation rules without manually specifying the search space and provide language-based reasoning information highlighting past experiments as feedback for iterative rule improvements. Here, we choose a decision tree as reasoning as it can be interpreted in natural language, effectively conveying knowledge of past experiments (i.e., the prediction models trained with the generated features) to the LLM. Our empirical results demonstrate that this simple framework consistently enhances the performance of various prediction models across diverse tabular benchmarks, outperforming competing automatic feature engineering methods., Comment: 18 pages

The remarkable capabilities and easy accessibility of large language models (LLMs) have significantly increased societal risks (e.g., fake news generation), necessitating the development of LLM-generated text (LGT) detection methods for safe usage. However, detecting LGTs is challenging due to the vast number of LLMs, making it impractical to account for each LLM individually; hence, it is crucial to identify the common characteristics shared by these models. In this paper, we draw attention to a common feature of recent powerful LLMs, namely the alignment training, i.e., training LLMs to generate human-preferable texts. Our key finding is that as these aligned LLMs are trained to maximize the human preferences, they generate texts with higher estimated preferences even than human-written texts; thus, such texts are easily detected by using the reward model (i.e., an LLM trained to model human preference distribution). Based on this finding, we propose two training schemes to further improve the detection ability of the reward model, namely (i) continual preference fine-tuning to make the reward model prefer aligned LGTs even further and (ii) reward modeling of Human/LLM mixed texts (a rephrased texts from human-written texts using aligned LLMs), which serves as a median preference text corpus between LGTs and human-written texts to learn the decision boundary better. We provide an extensive evaluation by considering six text domains across twelve aligned LLMs, where our method demonstrates state-of-the-art results. Code is available at https://github.com/hyunseoklee-ai/ReMoDetect., Comment: Published as a conference proceeding for NeurIPS 2024

Copepods participate in large-scale diel vertical migrations (DVM) as primary consumers in marine ecosystems. Given that they are negatively buoyant, gravity facilitates their downward cruising but impedes their upward relocation. In principle, overcoming this retarding force using drag-based propulsion during upward swimming incurs extra energy costs that neutrally buoyant or gravity-assisted downward swimmers fundamentally avoid. This added power requirement seemingly renders upward swimming disproportionally less efficient than downward swimming. However, we found a compensatory mechanism enhancing thrust in upward-swimming copepods. Using experimentally derived velocity and pressure fields, we observed that copepods pull water to the anterior, generating sub-ambient pressure gradients when cruising upwards, thereby inducing an upstream suction force to complement the thrust produced by the legs. Contrary to expectations that drag forces always dominate the leg recovery phase, the results show that the upstream suction generates net thrust for about a third of the recovery stroke. Such a suction-thrust mechanism promotes cost-effective swimming in larger animals like fish and jellyfish. However, it has never been reported at small scales. We compare these results with downward-swimming copepods that push rather than pull on water and demonstrate they do not benefit from thrust-enhancing suction effects during the recovery stroke. Instead, downward cruisers leverage gravitational effects to swim faster. `Puller' and `pusher' behaviors are driven by alterations of the leg kinematics, indicating a response to the body orientation rather than a fixed organism trait. These results offer insights into an essential swimming mechanism that can inform us about the role of mesozooplankton in driving biogenic hydrodynamic transport and its effects on marine biogeochemistry.

Recent successes suggest that parameter-efficient fine-tuning of foundation models as the state-of-the-art method for transfer learning in vision, replacing the rich literature of alternatives such as meta-learning. In trying to harness the best of both worlds, meta-tuning introduces a subsequent optimization stage of foundation models but has so far only shown limited success and crucially tends to underperform on out-of-distribution (OOD) tasks. In this paper, we introduce Sparse MetA-Tuning (SMAT), a method inspired by sparse mixture-of-experts approaches and trained to isolate subsets of pre-trained parameters automatically for meta-tuning on each task. SMAT successfully overcomes OOD sensitivity and delivers on the promise of enhancing the transfer abilities of vision foundation models beyond parameter-efficient fine-tuning. We establish new state-of-the-art results on a challenging combination of Meta-Dataset augmented with additional OOD tasks in both zero-shot and gradient-based adaptation settings. In addition, we provide a thorough analysis of the superiority of learned over hand-designed sparsity patterns for sparse expert methods and the pivotal importance of the sparsity level in balancing between in-distribution and out-of-distribution generalization. Our code is publicly available., Comment: The Forty-first International Conference on Machine Learning, 2024

Due to the rapid generation and dissemination of information, large language models (LLMs) quickly run out of date despite enormous development costs. To address the crucial need to keep models updated, online learning has emerged as a critical tool when utilizing LLMs for real-world applications. However, given the ever-expanding corpus of unseen documents and the large parameter space of modern LLMs, efficient adaptation is essential. To address these challenges, we propose Memory of Amortized Contexts (MAC), an efficient and effective online adaptation framework for LLMs with strong knowledge retention. We propose a feature extraction and memory-augmentation approach to compress and extract information from new documents into compact modulations stored in a memory bank. When answering questions, our model attends to and extracts relevant knowledge from this memory bank. To learn informative modulations in an efficient manner, we utilize amortization-based meta-learning, which substitutes an otherwise required optimization process with a single forward pass of the encoder. Subsequently, we learn to choose from and aggregate selected documents into a single modulation by conditioning on the question, allowing us to adapt a frozen language model during test time without requiring further gradient updates. Our experiment demonstrates the superiority of MAC in multiple aspects, including online adaptation performance, time, and memory efficiency. In addition, we show how MAC can be combined with and improve the performance of popular alternatives such as retrieval augmented generations (RAGs). Code is available at: https://github.com/jihoontack/MAC., Comment: Published as a conference proceeding for NeurIPS 2024

Despite its practical importance across a wide range of modalities, recent advances in self-supervised learning (SSL) have been primarily focused on a few well-curated domains, e.g., vision and language, often relying on their domain-specific knowledge. For example, Masked Auto-Encoder (MAE) has become one of the popular architectures in these domains, but less has explored its potential in other modalities. In this paper, we develop MAE as a unified, modality-agnostic SSL framework. In turn, we argue meta-learning as a key to interpreting MAE as a modality-agnostic learner, and propose enhancements to MAE from the motivation to jointly improve its SSL across diverse modalities, coined MetaMAE as a result. Our key idea is to view the mask reconstruction of MAE as a meta-learning task: masked tokens are predicted by adapting the Transformer meta-learner through the amortization of unmasked tokens. Based on this novel interpretation, we propose to integrate two advanced meta-learning techniques. First, we adapt the amortized latent of the Transformer encoder using gradient-based meta-learning to enhance the reconstruction. Then, we maximize the alignment between amortized and adapted latents through task contrastive learning which guides the Transformer encoder to better encode the task-specific knowledge. Our experiment demonstrates the superiority of MetaMAE in the modality-agnostic SSL benchmark (called DABS), significantly outperforming prior baselines. Code is available at https://github.com/alinlab/MetaMAE., Comment: Accepted to NeurIPS 2023. The first two authors contributed equally

This paper describes the results of the first shared task on the generation of teacher responses in educational dialogues. The goal of the task was to benchmark the ability of generative language models to act as AI teachers, replying to a student in a teacher-student dialogue. Eight teams participated in the competition hosted on CodaLab. They experimented with a wide variety of state-of-the-art models, including Alpaca, Bloom, DialoGPT, DistilGPT-2, Flan-T5, GPT-2, GPT-3, GPT- 4, LLaMA, OPT-2.7B, and T5-base. Their submissions were automatically scored using BERTScore and DialogRPT metrics, and the top three among them were further manually evaluated in terms of pedagogical ability based on Tack and Piech (2022). The NAISTeacher system, which ranked first in both automated and human evaluation, generated responses with GPT-3.5 using an ensemble of prompts and a DialogRPT-based ranking of responses for given dialogue contexts. Despite the promising achievements of the participating teams, the results also highlight the need for evaluation metrics better suited to educational contexts., Comment: to appear in the Proceedings of the 18th Workshop on Innovative Use of NLP for Building Educational Applications, ACL 2023, Toronto, Canada

Learning with few labeled tabular samples is often an essential requirement for industrial machine learning applications as varieties of tabular data suffer from high annotation costs or have difficulties in collecting new samples for novel tasks. Despite the utter importance, such a problem is quite under-explored in the field of tabular learning, and existing few-shot learning schemes from other domains are not straightforward to apply, mainly due to the heterogeneous characteristics of tabular data. In this paper, we propose a simple yet effective framework for few-shot semi-supervised tabular learning, coined Self-generated Tasks from UNlabeled Tables (STUNT). Our key idea is to self-generate diverse few-shot tasks by treating randomly chosen columns as a target label. We then employ a meta-learning scheme to learn generalizable knowledge with the constructed tasks. Moreover, we introduce an unsupervised validation scheme for hyperparameter search (and early stopping) by generating a pseudo-validation set using STUNT from unlabeled data. Our experimental results demonstrate that our simple framework brings significant performance gain under various tabular few-shot learning benchmarks, compared to prior semi- and self-supervised baselines. Code is available at https://github.com/jaehyun513/STUNT., Comment: ICLR 2023 (Spotlight)

Metachronal locomotion is a widespread swimming mode used by aquatic swarming organisms to achieve performance and maneuverability in the intermediate Reynolds number regime. Our understanding of the mechanisms driving these abilities is limited due to the challenges of studying live organisms. Designs inspired by nature present an approach for developing small and maneuverable underwater self-propelled robots. Here, we present the design, manufacture, and validation of the \emph{Pleobot} --a unique krill-inspired robotic swimming appendage constituting the first platform to study metachronal propulsion comprehensively. Our methods combine a multi-link 3D printed mechanism with active and passive actuation of the joints to generate natural kinematics. Using force and fluid flow measurements in parallel with biological data, we show the link between the flow produced by the appendage and thrust. Further, we provide the first account of a leading-edge suction effect that contributes to lift during the power stroke. The repeatability and modularity of the \emph{Pleobot} enable the independent manipulation of particular motions and traits to test hypotheses central to understanding the relationship between form and function. Lastly, we outline future directions for the \emph{Pleobot}, including adapting morphological features. We foresee a broad appeal to a wide array of scientific disciplines, from fundamental studies in ecology, biology, and engineering, to developing new platforms for studying oceans across the solar system., Comment: 13 pages, 5 figures

We introduce an efficient optimization-based meta-learning technique for large-scale neural field training by realizing significant memory savings through automated online context point selection. This is achieved by focusing each learning step on the subset of data with the highest expected immediate improvement in model quality, resulting in the almost instantaneous modeling of global structure and subsequent refinement of high-frequency details. We further improve the quality of our meta-learned initialization by introducing a bootstrap correction resulting in the minimization of any error introduced by reduced context sets while simultaneously mitigating the well-known myopia of optimization-based meta-learning. Finally, we show how gradient re-scaling at meta-test time allows the learning of extremely high-quality neural fields in significantly shortened optimization procedures. Our framework is model-agnostic, intuitive, straightforward to implement, and shows significant reconstruction improvements for a wide range of signals. We provide an extensive empirical evaluation on nine datasets across multiple multiple modalities, demonstrating state-of-the-art results while providing additional insight through careful analysis of the algorithmic components constituting our method. Code is available at https://github.com/jihoontack/GradNCP, Comment: Published as a conference proceeding for NeurIPS 2023

We introduce a modality-agnostic neural compression algorithm based on a functional view of data and parameterised as an Implicit Neural Representation (INR). Bridging the gap between latent coding and sparsity, we obtain compact latent representations non-linearly mapped to a soft gating mechanism. This allows the specialisation of a shared INR network to each data item through subnetwork selection. After obtaining a dataset of such latent representations, we directly optimise the rate/distortion trade-off in a modality-agnostic space using neural compression. Variational Compression of Implicit Neural Representations (VC-INR) shows improved performance given the same representational capacity pre quantisation while also outperforming previous quantisation schemes used for other INR techniques. Our experiments demonstrate strong results over a large set of diverse modalities using the same algorithm without any modality-specific inductive biases. We show results on images, climate data, 3D shapes and scenes as well as audio and video, introducing VC-INR as the first INR-based method to outperform codecs as well-known and diverse as JPEG 2000, MP3 and AVC/HEVC on their respective modalities.

Algorithms that involve both forecasting and optimization are at the core of solutions to many difficult real-world problems, such as in supply chains (inventory optimization), traffic, and in the transition towards carbon-free energy generation in battery/load/production scheduling in sustainable energy systems. Typically, in these scenarios we want to solve an optimization problem that depends on unknown future values, which therefore need to be forecast. As both forecasting and optimization are difficult problems in their own right, relatively few research has been done in this area. This paper presents the findings of the ``IEEE-CIS Technical Challenge on Predict+Optimize for Renewable Energy Scheduling," held in 2021. We present a comparison and evaluation of the seven highest-ranked solutions in the competition, to provide researchers with a benchmark problem and to establish the state of the art for this benchmark, with the aim to foster and facilitate research in this area. The competition used data from the Monash Microgrid, as well as weather data and energy market data. It then focused on two main challenges: forecasting renewable energy production and demand, and obtaining an optimal schedule for the activities (lectures) and on-site batteries that lead to the lowest cost of energy. The most accurate forecasts were obtained by gradient-boosted tree and random forest models, and optimization was mostly performed using mixed integer linear and quadratic programming. The winning method predicted different scenarios and optimized over all scenarios jointly using a sample average approximation method.

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

The idea of using a separately trained target model (or teacher) to improve the performance of the student model has been increasingly popular in various machine learning domains, and meta-learning is no exception; a recent discovery shows that utilizing task-wise target models can significantly boost the generalization performance. However, obtaining a target model for each task can be highly expensive, especially when the number of tasks for meta-learning is large. To tackle this issue, we propose a simple yet effective method, coined Self-improving Momentum Target (SiMT). SiMT generates the target model by adapting from the temporal ensemble of the meta-learner, i.e., the momentum network. This momentum network and its task-specific adaptations enjoy a favorable generalization performance, enabling self-improving of the meta-learner through knowledge distillation. Moreover, we found that perturbing parameters of the meta-learner, e.g., dropout, further stabilize this self-improving process by preventing fast convergence of the distillation loss during meta-training. Our experimental results demonstrate that SiMT brings a significant performance gain when combined with a wide range of meta-learning methods under various applications, including few-shot regression, few-shot classification, and meta-reinforcement learning. Code is available at https://github.com/jihoontack/SiMT., Comment: Published as a conference proceeding for NeurIPS 2022