1. Dataset on phenotypic characterization, on protein and genome analysis of three fluorescent Pseudomonas strains from mid-mountain water
- Author
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Dussert, Elodie, Tourret, Mélissa, Deracinois, Barbara, Duban, Matthieu, Leclère, Valérie, Cudennec, Benoit, Ravallec, Rozenn, Behra-Miellet, Josette, Institut Charles Viollette (ICV) - ULR 7394 (ICV), Université d'Artois (UA)-Université du Littoral Côte d'Opale (ULCO)-Institut Supérieur d'Agriculture-Université de Lille-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), European Union, through the ERDF funding, Centrale Lille, Centre National de la Recherche Scientifique (CNRS), Lille University, Region Hauts-de-France, Centrale Initiative Foundation, and ANR-11-EQPX-0037,REALCAT,Plateforme intégREe AppLiquée au criblage haut débit de CATalyseurs pour les bioraffineries(2011)
- Subjects
TOF/TOF, time-of-flight/time-of-flight ,Proteomics ,MS/MS, tandem mass spectrometry ,PFF, peptide fragment fingerprinting ,Spot no., spot number ,NCBI, National Center for Biotechnology Information ,R, reviewed ,Genome sequencing ,lcsh:Computer applications to medicine. Medical informatics ,MW, molecular weight ,Nb, number of experimental peptides recognized ,ANI, average nucleotide identity ,MALDI, matrix assisted laser desorption ionization ,Bacterial identification ,lcsh:Science (General) ,Immunology and Microbiology ,[QFIN]Quantitative Finance [q-fin] ,[SDE.IE]Environmental Sciences/Environmental Engineering ,P., Pseudomonas ,Fluorescent Pseudomonas ,MS, mass spectrometry ,NR, not reviewed ,PMF, peptide mass fingerprinting ,lcsh:R858-859.7 ,ppm, parts per million ,TCS, tetra correlation search ,lcsh:Q1-390 - Abstract
International audience; The identification of non-fermentative Gram negative bacilli from run-off and spring water, including fluorescent Pseudomonas is very complex and investigations are needed to contribute to the systematic of these bacteria. In this dataset, the phenotypical profiles of three strains isolated from Vosges mountains first identified as Pseudomonas fluorescens were determined using APIⓇ 50 CH galleries. Then, the identification of their proteins released directly into water was carried out using tandem/mass spectrometry after separating proteins on native two-dimensional polyacrylamide gels. Finally, genotypic analysis data is presented, that illustrates biodiversity in this fluorescent bacterial group. This data is referred by a research article entitled "Fluorescent Pseudomonas strains from mid-mountain water able to release antioxidant proteins directly into water".
- Published
- 2020
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