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1. Exploring Regulatory Properties of Genes Associated with Nonsyndromic Male Infertility.

2. Exploring Regulatory Properties of Genes Associated with Nonsyndromic Male Infertility

4. Analysis of the Drosophila and human DPR elements reveals a distinct human variant whose specificity can be enhanced by machine learning.

5. Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases

6. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

8. TATA box-binding protein-related factor 3 drives the mesendoderm specification of human embryonic stem cells by globally interacting with the TATA box of key mesendodermal genes

9. Investigating the sequence landscape in the Drosophila initiator core promoter element using an enhanced MARZ algorithm.

10. Identification of the human DPR core promoter element using machine learning

12. Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection.

13. Core Promoter Regions of Antisense and Long Intergenic Non-Coding RNAs.

14. Promoter generation for the chimeric sex-determining gene dm-W in Xenopus frogs.

15. On the Role of TATA Boxes and TATA-Binding Protein in Arabidopsis thaliana.

16. Investigating the sequence landscape in the Drosophila initiator core promoter element using an enhanced MARZ algorithm

17. AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.

18. Identification of evolutionarily conserved downstream core promoter elements required for the transcriptional regulation of Fushi tarazu target genes

19. Russian Science Foundation grant No. 20-14-00140 supported this study. The authors are thankful to the multi-access Center 'Bioinformatics' for the use of computational resources as supported by Russian government project FWNR-2022-0020 and the Russian Federal Science and Technology Program for the Development of Genetic Technologies.

20. Multiple, Independent T Cell Lymphomas Arising in an Experimentally FIV-Infected Cat during the Terminal Stage of Infection.

21. Genome-wide association study uncovers a novel QTL allele of AtS40-3 that affects the sex ratio of cyst nematodes in Arabidopsis

22. Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiation.

24. Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.

25. The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters.

26. The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters

27. A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting.

28. Core promoter-specific gene regulation: TATA box selectivity and Initiator-dependent bi-directionality of serum response factor-activated transcription

29. Structure of promoter-bound TFIID and model of human pre-initiation complex assembly

30. Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome

31. On the Role of TATA Boxes and TATA-Binding Protein in Arabidopsis thaliana

33. Disruptive Selection of Human Immunostimulatory and Immunosuppressive Genes Both Provokes and Prevents Rheumatoid Arthritis, Respectively, as a Self-Domestication Syndrome

34. Disruptive Selection of Human Immunostimulatory and Immunosuppressive Genes Both Provokes and Prevents Rheumatoid Arthritis, Respectively, as a Self-Domestication Syndrome.

35. TRF2, but not TBP, mediates the transcription of ribosomal protein genes

36. Unconventional Sequence Requirement for Viral Late Gene Core Promoters of Murine Gammaherpesvirus 68

37. Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression

39. Regulatory interplay between TFIID’s conformational transitions and its modular interaction with core promoter DNA

40. H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation

41. Genetic selection for context-dependent stochastic phenotypes: Sp1 and TATA mutations increase phenotypic noise in HIV-1 gene expression.

42. Gilbert's Syndrome in Children with Unconjugated Hyperbilirubinemia - An Analysis of 170 Cases.

43. Viral reprogramming of host transcription initiation.

44. Mechanisms establishing TLR4-responsive activation states of inflammatory response genes.

45. Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters

47. Simple and accurate transcriptional start site identification using Smar2C2 and examination of conserved promoter features

48. Hybrid Synthetic Promoters in Saccharomyces cerevisiae Built on Foreign Promoter Sequences.

49. promSEMBLE: Hard Pattern Mining and Ensemble Learning for Detecting DNA Promoter Sequences.

50. Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases.

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