20 results on '"Szabóová, Dana"'
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2. Environmental DNA captured on the fish skin mucus – a potential bias to molecular diet analyses
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Števove Barbora, Arendt Darina, Slovák Švolíková Kristína, Szabóová Dana, Žitňanová Kristína, and Gruľa Daniel
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edna contamination ,experiment ,feeding ecology ,fish ,molecular approach ,Aquaculture. Fisheries. Angling ,SH1-691 - Abstract
Molecular diet analyses from faeces appear to be an ideal alternative to traditional feeding ecology studies. Nevertheless, this method can carry a risk of contamination from the environment or from body surface of the fish itself. To tackle the contamination problem, an experiment was performed with the main aim to identify whether foreign DNA is present or absent on the fish skin mucus, and if so, the second aim was to find out if this environmental DNA (eDNA) can be removed by repeated wiping of the skin mucus. Specimens of fish were exposed to eDNA and then their fish skin mucus was wiped with two consecutive smears (using a forensic swab) that were subjected to molecular analysis. The results demonstrate that eDNA from other organisms can be captured and persist on the fish skin mucus, posing a potential risk of contamination of faeces samples. Repeated wiping of mucus reduces or eliminates foreign DNA. This study provides new insights that can contribute to the development of the molecular methods, reducing the bias and increasing the accuracy of the diet spectrum analyses.
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- 2023
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3. Pluteus flammans, a new brightly coloured species in Pluteus sect. Celluloderma (Pluteaceae) from Central Europe
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Polhorský, Adam, Justo, Alfredo, Szabóová, Dana, Konyariková, Zuzana, Dima, Bálint, and Ševčíková, Hana
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Agaricomycetes ,Basidiomycota ,Fungi ,Biodiversity ,Plant Science ,Agaricales ,Pluteaceae ,Ecology, Evolution, Behavior and Systematics ,Taxonomy - Abstract
In this article we describe a new species, Pluteus flammans, that is characterised by bright orange-red colours, a villose and translucently striate pileus, and a trichodermal pileipellis. The species is described based on material from Slovakia and Hungary, where it grows on well-decayed angiosperm wood (Quercus spp., Fagus sylvatica, and Tilia sp.). In the phylogenetic analyses (LSU, ITS and TEF1-α) P. flammans appears as sister to the North American Pluteus aurantipes, which also has brightly coloured basidiomes, however this species differs in the bright red stipe, darker colours of the pileus, slightly larger basidiospores, and shorter caulocystidia. Molecular data supports the recognition of both taxa as separate species, and confirms their placement in Pluteus sect. Celluloderma, despite the fact that P. aurantipes was originally considered to belong to Pluteus sect. Hispidoderma.
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- 2023
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4. Malacological news from the Czech and Slovak Republics in 2021
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Čejka, Tomáš, Beran, Luboš, Coufal, Radovan, Dvořák, Libor, Horáčková, Jitka, Horsáková, Veronika, Juřičková, Lucie, Korábek, Ondřej, Adamcová, Tereza, Szabóová, Dana, Škodová, Jana, and Horsák, Michal
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faunistic survey ,mollusc fauna ,species list - Abstract
This paper presents important faunistic records conducted in the Czech and Slovak Republics during 2021. In the Šumava Mts, South Bohemia, a hydrobiid snail of the genus Alzoniella was found. Monacha cantiana s. lato was genetically confirmed for the first time in the city of Bratislava, Slovakia. New sites of Cornu aspersum (Prague) and Tandonia kusceri (southern and central Slovakia) were confirmed. A new colony of the slug Limacus maculatus was found in SE Moravia. New records of several endangered species, e.g. Vertigo angustior, V. moulinsiana, Anisus septemgyratus, Gyraulus acronicus, G. rossmaessleri, Planorbis carinatus, Pisidium amnicum, P. globulare, P. moitessierianum, P. pseudosphaerium and P. tenuilineatum, are also presented. Location data are published with all details in a supplementary table.
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- 2022
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5. Pluteus flammans Polhorsky, Sevcikova, Justo, Fedor & Dima 2023, sp. nov
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Polhorský, Adam, Justo, Alfredo, Szabóová, Dana, Konyariková, Zuzana, Dima, Bálint, and Ševčíková, Hana
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Agaricomycetes ,Basidiomycota ,Fungi ,Pluteus ,Biodiversity ,Agaricales ,Pluteaceae ,Pluteus flammans ,Taxonomy - Abstract
Pluteus flammans Polhorský, Ševčíková, Justo, Fedor & Dima sp. nov., Figs. 2, 3 MycoBank:—MB 847337 Etymology:— flammans (Latin) = flaming, burning. Refers to the bright reddish, yellow-orange colour of the basidiomata. Diagnosis:—A brightly coloured species with a trichodermal pileipellis in Pluteus sect. Celluloderma. Similar to P. aurantipes, but differing in the colours of the pileus and stipe, basidiospores (smaller), caulocystidia (shorter), geographic distribution, and ITS and TEF1-α sequences. Description:— Basidiomata scattered to subgregarious, growing individually or in small groups of up to 5 basidiomata. Pileus 8–26 mm diam, convex, campanulate, becoming plano-convex to applanate, with distinct umbo; translucently striate at the margin and up to half the pileus diam.; surface villose with abundant scales at the centre, becoming less frequent towards the edge; margin only finely pubescent; yellowish orange, orange-red to orangebrown, darker at the centre. Lamellae free, moderately crowded, broad, light yellow-orange; edge whitish, slightly pubescent. Lamellulae present. Stipe 10–20 × 2–3 mm, cylindrical, slightly broadened at the base or not, fibrillose, entirely pubescent when young, later mainly at lower half, remaining tomentose at base, yellow-orange, concolorous with pileus, paler towards top. Context yellowish. Odor indistinct, taste not observed. Basidiospores [245, 7, 7] (4.0–)5.2–6.3(–7.5) × (3.5–)4–4.7(–5.3) μm, Lav × Wav = 5.4–5.9 × 4.1–4.4 µm, Q = (1.08–)1.23–1.41(–1.56), avQ = 1.3–1.33, subglobose to ellipsoid, rarely subovoid, ± thick-walled; lipid content granular in living basidiospores, coalescing into larger guttule(s) in more mature or dead basidiospores. Basidia 17–29 × 6.0–10.0 μm, 4-spored, narrowly clavate to clavate, sometimes with median constriction. Basidioles 14–25 × 4.8– 10.5 μm, narrowly to broadly clavate. Pleurocystidia absent. Cheilocystidia (18.0–)26–43(–55) × (6.5–)9.5–14.5(–21) μm, abundant, forming sterile layer at lamella edge, narrowly to broadly clavate, narrowly lageniform to lageniform or subfusiform, rarely subutriform, with rounded apex, hyaline, rarely containing large yellow to yellowish brown vacuole(s), thin-walled. Pileipellis a trichoderm, composed of cylindrical or narrowly fusiform elements, with yellow to yellow-orange to brown intracellular pigment, 29–160 × 6.4–31 μm. Stipitipellis a cutis, made up of long cylindrical hyphae, 24–200 × (1.8–)5.0–20 μm, containing yellow, yellow-orange vacuole(s). Caulocystidia abundant, 19–115 × 5.9–14 μm, cylindrical to narrowly clavate or narrowly subfusiform, appearing in clusters or solitary, thin-walled, with or without yellow to orange intracellular pigment. Crystal druses sometimes present in pileipellis, stipitipellis and among cheilocystidia. Clamp connections absent in all tissues. Ecology and distribution:—Known from Slovakia and Hungary on fallen, strongly rotten Quercus spp., e.g., Q. cerris L. (1753: 997), trunks and logs in lowland and hilly xerothermophilous Pannonian oak groves; in beech or hornbeam forests on Fagus sylvatica L. (1753: 998) and Tilia sp. rotting trunks and branches near streams. Holotype:— SLOVAKIA. Bratislava,. Senec, Martinský les, very rotten Quercus sp. trunk, N48.25634° E17.38136°, elev. 155 m, 20 August 2020, A. Polhorský (holotype BRNM 829078, ITS sequence GenBank OQ331563; TEF1-α OQ332374, MycoBank MB 847337). Additional material examined:— SLOVAKIA. Bratislava, Senec, Martinský les, very rotten Quercus sp. trunk., N48.2467°, E17.3649°, elev. 172 m, 21 May 2022, A . Polhorský, BRA CR36322; N48.2468° E17.36715°, elev. 170 m, 11 June 2022, A . Polhorský, BRA CR36323; Prešov, Snina, Trstená, mossy, rotten Tilia sp. branch, elev. 280 m, 16 July 2013, J . Pavlík, BRA CR25862; ibid., 30 July 2013, J . Pavlík, BRA CR25868; Zemplínske hámre, Čierny potok, mossy, very rotten, possibly a Fagus sylvatica trunk, elev. 490 m, 5 August 2013, J . Pavlík, BRA CR25908; Košice, Brezina, Izra, very rotten Fagus sylvatica trunk, elev. 450 m, 7 August 2020, M. Lazor, BRA CR35417; Trnava, Hubina, Salaška, rotting remains of Quercus sp. trunk, elev. 220 m, 13 June 2016, M. Villaris, BRA CR35418; HUNGARY. Pest, Budakeszi, Szarvas-árok, on old, decaying Quercus sp. trunk, N47.3181°, E18.5346°, elev. 320 m, 19 June 2018, I . Fedor & B. Dima , DB- 2018-06-19 (ELTE); Borsod-Abaúj-Zemplén, Miskolc, Köpüs-völgy, on old, decaying Quercus cerris log, 16 August 2021, G . Pelles, DB- 2021-08-16 (ELTE)., Published as part of Polhorský, Adam, Justo, Alfredo, Szabóová, Dana, Konyariková, Zuzana, Dima, Bálint & Ševčíková, Hana, 2023, Pluteus flammans, a new brightly coloured species in Pluteus sect. Celluloderma (Pluteaceae) from Central Europe, pp. 69-79 in Phytotaxa 598 (1) on pages 72-76, DOI: 10.11646/phytotaxa.598.1.5, http://zenodo.org/record/7958816
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- 2023
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6. Coprinopsis alnivora Voto, Boll. AMER 2019
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Bednár, Radovan, Červenka, Ján, Arendt, Darina, Szabóová, Dana, Greilhuber, Irmgard Krisai, Pošta, Ana, Mešić, Armin, and Tkalčec, Zdenko
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Agaricomycetes ,Coprinopsis ,Basidiomycota ,Fungi ,Biodiversity ,Coprinopsis alnivora ,Agaricales ,Psathyrellaceae ,Taxonomy - Abstract
Coprinopsis alnivora (Bogart) Voto, Boll. AMER 107(2): 94 (2019) (Figs 2–5) Basionym: Coprinus alnivorus Van de Bogart, Mycotaxon 4 (1): 241 (1976). Pileus up to 55 mm high when unexpanded, 15–55 mm wide at maturity; subglobose, ellipsoid or ovoid when young, then paraboloid, campanulate or obtusely conical, finally expanded to plano-convex or applanate, sometimes slightly depressed at centre; margin sometimes radially splitting in places, mostly revolute in mature basidiomata; surface densely plicate-sulcate except in the smooth central zone, often slimy, whitish, cream or (pale) brownish at first, then starts to darken from the edge towards the centre, becoming light brown, grey-brown, often with pinkish to purplish hue, and finally brown-grey, grey or grey-black; (partially) deliquescent; when very young completely covered with a dense, usually abundant universal veil (thickest at the centre, up to 3 mm), with brownish to dark grey-brown (only rarely whitish) thin upper layer (remains scattered after veil development) and thicker white layer underneath, soon veil starting to break up into patches of different size and shape, sooner or later partially showing the pileal surface, rarely the veil poor, thin and soon disappearing. Lamellae free, very crowded and thin, L> 80, up to 14 mm broad, lamellulae present; at first white, soon becoming pinkish to purplish, brown or grey-brown with purplish tone, brown-grey, dark grey and finally black; edge whitish from prominent and very abundant cheilocystidia, deliquescent with age. Stipe 25–110 mm × 3–10 mm, (sub)cylindrical or widened towards the base (up to 20 mm), sometimes widened at the apex, dry, hollow, white to whitish, finely tomentose-squamulose (more pronounced towards the base) to silky fibrillose, sometimes with small dark olive-brown scales or fibrils in the lower part, often with adpressed ring-like veil remnants in the middle or in the lower half of the stipe or with ± projected membranaceous ring-like veil remnants near the base, without rhizomorphs. Flesh white, relatively compact when young, fragile at maturity. Smell weak, reminiscent of raw potatoes or slightly unpleasant like in Coprinopsis picacea. Taste mild. Spore print black. Basidiospores [540/9/6] (6.8–)7.5– 8.8 –10.0(–10.5) × (5.9–)6.2– 7.1 –8.1(–8.4) × (5.1–)5.5– 6.2 –6.9(–7.4) µm, averages of different basidiomata 8.0–9.5 × 6.4–7.5 × 5.8–6.6 µm, Q f = (1.04–)1.07– 1.24 –1.42(–1.50), Q s = (1.20–) 1.25– 1.42 –1.57(–1.67), Q f av. = 1.14–1.31, Q s av. = 1.32–1.49, slightly to strongly flattened, in frontal view mostly ellipsoid to ovoid, less frequently subglobose, subangular, submitriform or sublimoniform, sometimes to rather often ± irregular (asymmetrical), with obtuse to somewhat acute base and rounded to truncate apex (especially in KOH), in side view mostly ellipsoid, much less often ± amygdaliform or ovoid, smooth, thick-walled (up to 1.4 µm), (redbrown) dark red-brown to almost black in H 2 O and NH 4 OH, (yellow-brown) dark yellowish-brown to black in KOH, germ pore central, distinct. Basidia 17–33 × 7–11 μm, clavate, 4-spored, thin-walled, hyaline, surrounded by 4–7 hymenophysalides (pseudoparaphyses); sterigmata up to 5 μm long. Cheilocystidia 25–130 × 12–38 μm, ellipsoid, elongate-ellipsoid, ovoid, fusiform, conical, with obtuse to acute apex, thin-walled, hyaline to subhyaline, abundant. Pleurocystidia 41–173 × 15–55 μm, ellipsoid, oblong, fusiform, conical, with obtuse, acute, acuminate, mucronate or somewhat irregular apex (e.g. curved or with two apical protuberances), often with one or a few short excrescences near the base, thin-walled, hyaline to pale brownish, mostly abundant. Pileipellis a cutis, composed of repent, densely arranged, thin-walled, smooth, hyaline hyphae, 3–13 µm wide. Veil hyphae 2–15(–22) μm wide, occasionally to rather frequently branched, sparsely diverticulate, thin-walled (up to 0.5 µm) or rarely moderately thick-walled (up to 0.8 µm), sometimes finely encrusted, mostly hyaline, sometimes brownish; cells occasionally constricted at the septa or somewhat inflated. Clamp-connections present, conspicuous, abundant. Distribution and ecology:— Coprinopsis alnivora is known from 12 collections in four countries of North America and Europe: the USA, Washington State (1); Croatia (1); Slovakia (7); and Austria (3). It grows on the wood of living deciduous trees, mostly in decayed cavities or from wounds, or (less often) on dead trees, in forests and parks. Six host tree species are known so far: (a) Fagus sylvatica (on three living trees, on one dead tree— Slovakia), (b) Fraxinus excelsior (on one living tree— Slovakia), (c) Acer campestre (on one living tree— Slovakia), (d) Populus nigra (on two living trees— Croatia), (e) Alnus sp. (on a dead (?) tree— USA), (f) Magnolia salicifolia (on one living tree— Austria). It was also found in Austria on one living and one dead unidentified tree. In Slovakia, it has been observed that C. alnivora is able to fruit regularly from the same living tree over a long period of time (nine years and more). Specimens examined: — SLOVAKIA. Bratislava region: Pezinok, Malá Homoľa, 550 m a.s.l., 48.36293° N, 17.27086° E, on living Fagus sylvatica, 11 May 2013, leg. J. Kuriplach, Ľ. Pešková, BRA CR33777, GenBank Number: MT 887854; Limbach, Konské hlavy, 490 m a.s.l., 48.331944° N, 17.193250° E, in the cavity of living Fraxinus excelsior, 30 October 2018, leg. R. Bednár, BRA CR33775, GenBank Number: MT 887857; Limbach, Konské hlavy, 490 m a.s.l., 48.331944° N, 17.193250° E, in the cavity of living Fraxinus excelsior, 23 October 2019, leg. R. Bednár, BRA CR33776, GenBank Number: MT 887856; Kuchyňa, Vysoký Rajd, 400 m a.s.l., 48.401556° N, 17.209667° E, in the cavity of living Fagus sylvatica, 14 June 2020, leg. R. Bednár, BRA CR33778, GenBank Number: MT 887852; Kuchyňa, Tri stodôlky, 520 m a.s.l., 48.422033° N, 17.208150° E, on fallen decayed log of Fagus sylvatica, 27 June 2020, leg. J. Červenka, T. Sobocký, BRA CR33779, GenBank Number: MT 887853; Borinka, Úboč, 270 m a.s.l., 48.259001° N, 17.100003° E, on living Acer campestre, 7 October 2020, leg. A. Bystrická, BRA CR33781, GenBank Number: MZ 364343; Trnava region: Lošonec, Zabité, 370 m a.s.l., 48.480933° N, 17.358967° E, on living Fagus sylvatica, 2 November 2019, leg. D. Solár, BRA CR33780, GenBank Number: MT 887855. — AUSTRIA. Vienna: Vienna city, district Landstrasse, Botanical Garden of the University of Vienna, 180 m a.s.l., 48.19350° N, 16.38392° E, in small decayed cavity of the living deciduous tree, 31 October 2018, leg. I. Krisai-Greilhuber, WU 41009, GenBank Number: MT 828909; Vienna: Vienna city, district Leopoldstadt, Prater Heustadlwasser, 170 m a.s.l., 48.20064° N, 16.26667° E, in knothole of fallen deciduous tree, 25 September 2019, leg. R. Brandstätter, WU 42007, GenBank Number: MT 828910; Vienna: Vienna city, district Landstrasse, Botanical Garden of the University of Vienna, 190 m a.s.l., 48.19000° N, 16.38306° E, in decayed cavity of living Magnolia salicifolia, 24 September 2020, leg. I. Krisai-Greilhuber, WU 43426, GenBank Number: MZ 407758. — CROATIA. Zagreb County: city of Zagreb, Mirogoj cemetery, 183 m a.s.l., 45.83272° N, 15.99375° E, public park, on two planted Populus nigra trees (cut down in the meantime), in decayed tree cavities, up to 1.4 m above the ground, 12 basidiomata in total, mostly a few together, in different stages of maturity, 4 October 2008, leg. M. Čerkez, CNF 1 / 5429, GenBank Number: MT 796099., Published as part of Bednár, Radovan, Červenka, Ján, Arendt, Darina, Szabóová, Dana, Greilhuber, Irmgard Krisai-, Pošta, Ana, Mešić, Armin & Tkalčec, Zdenko, 2022, Coprinopsis alnivora (Psathyrellaceae), a rare species from North America is discovered in Europe, pp. 136-152 in Phytotaxa 542 (2) on pages 142-147, DOI: 10.11646/phytotaxa.542.2.2, http://zenodo.org/record/6415574
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- 2022
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7. Hydrous ferric oxides (HFO's) precipitated from contaminated waters at several abandoned Sb deposits – Interdisciplinary assessment
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Lalinská-Voleková, Bronislava, primary, Majerová, Hana, additional, Kautmanová, Ivona, additional, Brachtýr, Ondrej, additional, Szabóová, Dana, additional, Arendt, Darina, additional, Brčeková, Jana, additional, and Šottník, Peter, additional
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- 2022
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8. Coprinopsis alnivora (Psathyrellaceae), a rare species from North America is discovered in Europe
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BEDNÁR, RADOVAN, primary, ČERVENKA, JÁN, additional, ARENDT, DARINA, additional, SZABÓOVÁ, DANA, additional, KRISAI-GREILHUBER, IRMGARD, additional, POŠTA, ANA, additional, MEŠIĆ, ARMIN, additional, and TKALČEC, ZDENKO, additional
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- 2022
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9. Coprinopsis alnivora (Psathyrellaceae), a rare species from North America is discovered in Europe
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Bednár, Radovan, Červenka, Ján, Arendt, Darina, Szabóová, Dana, Greilhuber, Irmgard Krisai, Pošta, Ana, Mešić, Armin, and Tkalčec, Zdenko
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Agaricales ,Basidiomycota ,biogeography ,cultivation study ,morphology ,phylogeny ,taxonomy ,Agaricomycetes ,Fungi ,Biodiversity ,Plant Science ,Psathyrellaceae ,Ecology, Evolution, Behavior and Systematics ,Taxonomy - Abstract
A rare species, Coprinopsis alnivora, was previously known from the type collection in Washington State, USA. Afterward, 11 additional samples were collected from five new host trees at nine localities in Europe (Austria, Croatia, and Slovakia). The species indicated a preference for growth in cavities or wounds of living deciduous trees. Its mycelium and basidiomata were successfully cultivated under laboratory conditions. A detailed morphological description of the basidiomata supplemented with colour photographs and line drawings is provided. Delimitation characters from similar species are discussed. Molecular phylogenetic relationships within the genus Coprinopsis were inferred from ITS rDNA sequences and are presented by a phylogram. Molecular genetic analyses revealed that C. alnivora represents a genetically well-delimited species with six known haplotypes.
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- 2022
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10. Malacological news from the Czech and Slovak Republics in 2020
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Čejka, Tomáš, primary, Beran, Luboš, additional, Coufal, Radovan, additional, Dvořák, Libor, additional, Hlaváč, Jaroslav Č., additional, Horáčková, Jitka, additional, Horsáková, Veronika, additional, Juřičková, Lucie, additional, Kosová, Tereza, additional, Čačaný, Juraj, additional, Szabóová, Dana, additional, Říhová, Dagmar, additional, Tej, Branislav, additional, and Horsák, Michal, additional
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- 2021
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11. CHALLENGES ASSOCIATED WITH BARCODING METHOD.
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Szabóová, Dana, Štubňová, Eliška Gbúrová, and Kautmanová, Ivona
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GENETIC barcoding , *ANIMAL diversity , *NATURAL history museums , *PLANT identification , *DNA primers , *VEGETATION mapping - Abstract
The DNA barcoding project provides a very quick and easy way to identify different types of organisms based on their DNA. The main objective of this study is to obtain the sequences of different species of fungi, plants and animals to map the biodiversity of Slovakia. This project also represents a new use for collections stored in natural history museums around the world. This paper shows in particular a laboratory view of the DNA barcoding project, such as the practical application of the methodology for different groups of organisms, the possibilities of using different genes and emphasizes the importance of professional taxonomists. In the museum, we deal with a wide range of samples and we encounter various difficulties. For example, some genera of fungi contain unreadable sections in the middle of the sequence, in insect groups it is a problem with samples killed with ethyl acetate or too old samples, where the DNA is mostly degraded. For the amplification of bird samples, we have found no consistent method for the whole group and we work with several different primer sets and conditions to be able to amplify most of the samples. The identification of various plant species according to their barcodes has also proven quite difficult, as plants are a very specific and fast-evolving group of organisms, and their distinction according to the short barcode regions is nearly impossible. Therefore, we would like to emphasize the necessity of cooperation with specialized taxonomists. Our data are continuously uploaded to the international BOLD database, where there are already more than 500 different species of a wide range of groups of fungi, plants and animals from Slovakia. [ABSTRACT FROM AUTHOR]
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- 2022
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12. MICROBIAL COMPOSITION OF NATURAL Fe OXYHYDROXIDES AND ITS INFLUENCE ON ARSENIC AND ANTIMONY SORPTION.
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Lalinská-Voleková, Bronislava, Majerová, Hana, Kautmanová, Ivona, Faragó, Tomáš, Szabóová, Dana, Brčeková, Jana, and Šottník, Peter
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ARSENIC ,NUCLEOTIDE sequencing ,BACTERIAL communities ,COMMUNITIES ,SORPTION ,MICROBIAL communities ,ANTIMONY ,PROTEOBACTERIA - Abstract
The presented paper represents a comprehensive analysis of hydrous ferric oxides (HFOs) precipitated from Fe rich drainage waters contaminated by arsenic and antimony. Ochre samples from three abandoned Sb deposits were collected in three different seasons and were characterized from the mineralogical, geochemical, and microbiological point of view. They were formed mainly by poorly crystallized 2-line ferrihydrite, with the content of arsenic in samples ranging from 0.7 wt.% to 13 wt.% and content of antimony ranging from 0.025 wt.% up to 1.2 wt.%. Next-generation sequencing approach with 16S RNA, 18S RNA and ITS markers was used to characterize bacterial, fungal, algal, metazoal and protozoal communities occurring in the HFOs. In the 16S RNA, the analysis dominated bacteria (96.2 %) were mainly Proteobacteria (68.8 %) and Bacteroidetes (10.2 %) and to less extent also Acidobacteria, Actinobacteria, Cyanobacteria, Firmicutes, Nitrosprae and Chloroflexi. Alpha and beta diversity analysis revealed that the bacterial communities of individual sites do not differ significantly, and only subtle seasonal changes were observed. This study provides evidence of diverse microbial communities that exist in drainage waters and are highly important in the process of mobilization or immobilization of the potentially toxic elements. [ABSTRACT FROM AUTHOR]
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- 2022
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13. ZAUMZEUG MIT ZÜGELKETTEN AUS BORINKA, KREIS MALACKY (SW SLOWAKEI).
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BAZOVSKÝ, IGOR, MAJEROVÁ, HANA, SZABÓOVÁ, DANA, and ARENDT, DARINA
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An accidental find of mainly bronze parts of a horse tackle from the Roman period discovered in 2017 in the Lesser Carpathians near the municipality of Borinka. The set includes, as well as a bit with chains, the end forgings of cheek pieces, end forgings of a strap with gold-plated silver metal plate, a frontal metal plate with silver applications, as well as other forgings and fragments. The bit is a Vimose I type, finds of which appear over an extensive area of Barbarian territory from southern Scandinavian to the central Danube region, and are dated to B2/C1 and C1a. The RFA-analysis of the metal items showed that with the exception of the iron part placed in the mouth of the horse, they are made of bronze with the addition of zinc. Some items are decorated with silver and gold. By the metal items, a preserved part of a strap was found, which was subjected to detailed DNA analysis. The analysis documented the use of cow's leather. [ABSTRACT FROM AUTHOR]
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- 2020
14. The complete mitochondrial DNA sequence from Kazachstania sinensis reveals a general +1C frameshift mechanism in CTGY codons
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Szabóová, Dana, primary, Hapala, Ivan, additional, and Sulo, Pavol, additional
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- 2018
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15. THE ROLE OF SECONDARY OXIDES IN POTENTIALLY TOXIC ELEMENTS MIGRATION.
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Lalinská-Voleková, Bronislava, Kautmanová, Ivona, Arendt, Darina, Szabóová, Dana, Radková, Anežka Borčinová, and Brachtýr, Ondrej
- Subjects
ANTIMONY ,ARSENIC ,WATER pollution ,WATER quality ,GROUNDWATER ,MICROBIAL diversity ,BACTERIAL diversity - Abstract
Potentially toxic elements such as arsenic and antimony represent dangerous contaminants for the ground and surface water around abandoned Sb deposits in Slovakia. Therefore, we are working on a complex study on the material from tailings, including mineralogy, water quality and microbial inhabitants of the contaminated waters. The aim of the work presented here, was to observe the chemical composition of iron ochres and the role of the microbial diversity in the mobilization or immobilization of As and Sb from a contaminated landfill. In 2018, arsenic rich (up to 28.3 wt%) and Sb rich (up to 2.7 wt%) samples of HFO were collected at four localities in Slovakia. All samples were analyzed, after appropriate dilution, for As and Sb. An Illumina MiSeq sequencing platform was applied to detect microbial species composition of the ochre samples. For all four sites (Pezinok, Medzibrod, Dúbrava and Čučma), we report a chemical composition and a detailed description of the species composition. The most common species of all sites were Rhodoferax spp. (dissimilatory iron reducing bacteria) and Methylobacter spp. (facultative methylotroph). The highest difference in frequency of the bacterial species composition were observed at the site Čučma, where one species (Methylobacter spp.) formed the majority of the sample. The abundance and high diversity of bacterial community have proven to be highly important in the process of mobilization or immobilization of the potentially toxic elements. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
16. DIVERSITY OF PLANTS AND FUNGI IN THE AREAS CONTAMINATED BY Sb MINING IN SLOVAKIA.
- Author
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Lalinská-Voleková, Bronislava, Kautmanová, Ivona, Štubňová, Eliška Gbúrová, Arendt, Darina, Szabóová, Dana, and Faragó, Tomáš
- Subjects
PLANT diversity ,PHYTOPATHOGENIC fungi ,FUNGI diversity ,TAILINGS dams ,ABANDONED mines - Abstract
Weathering of open adits, dumps and non-isolated tailing impoundments at abandoned ore deposits cause many problems such as water, soil and stream sediments contamination by potentially toxic elements. Soil contamination often results in a local change in biodiversity. In the present study, we describe the diversity of plants and fungi in the areas contaminated mainly with arsenic and antimony. The highest contaminant contents (As, Sb, Pb, Zn, Cu) in soils were generally identified in alluvia of draining streams. In the soils, Sb and As are mainly bound in the structures of secondary Fe or Sb oxides and oxyhydroxides, which arise due to the oxidation of suldfidic minerals in soils in situ (precipitation from soil pore solutions). Phytosociologically, plant communities on anthropogenically significantly affected habitats - old mining dumps and ponds - differ significantly from those characteristic of the given type of vegetation zone on unpolluted substrates. Fungal diversity at the contaminated areas is realtively high and does not seem to differ from the surroundig habitats. However further research for the longer period is required to evaluate the whole mycobiota in its complexity. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
17. The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’
- Author
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Sulo, Pavol, primary, Szabóová, Dana, additional, Bielik, Peter, additional, Poláková, Silvia, additional, Šoltys, Katarína, additional, Jatzová, Katarína, additional, and Szemes, Tomáš, additional
- Published
- 2017
- Full Text
- View/download PDF
18. The complete mitochondrial DNA sequence from Kazachstania sinensis reveals a general +1C frameshift mechanism in CTGY codons.
- Author
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Szabóová, Dana, Hapala, Ivan, and Sulo, Pavol
- Subjects
- *
NUCLEOTIDE sequence , *MITOCHONDRIAL DNA , *YEAST fungi genetics , *TRANSFER RNA , *SACCHAROMYCES - Abstract
The complete mitochondrial DNA (mtDNA) sequence from Kazachstania sinensis was analysed and compared to mtDNA from related yeasts. It contained the same set of genes; however, it only contained 23 tRNAs, as the trnR2 gene was absent. Most of the 12 introns within cox1, cob and rnl genes were inserted in the same sites as in other yeasts; however, two introns in rnl were in unusual positions. Traits such as gene order and GC cluster number were more related to Saccharomyces than to the other Kazachstania or linked clades. The most exceptional feature was the +1 frameshift in cox3, atp6 and cob open reading frames that was also found in other Kazachstania, Nakaseomyces delphensis and Candida glabrata. Comparison of DNA and protein sequences revealed the universal sites of +1C frameshifts were either CTGT or CTGC sequences. Moreover, an A→G substitution was found at position 37 in the anticodon stem loop tRNA gene for cysteine in all species with frameshifts but not in other sibling yeasts. This substitution allowed strong Watson-Crick base-pairing between an unmodified G (ACG) and the skipped C in the CTGY, leading to this quadruplet being read as cysteine. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
19. The evolutionary history of Saccharomyces species inferred fromcompleted mitochondrial genomes and revision in the 'yeast mitochondrial genetic code'.
- Author
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Sulo, Pavol, Szabóová, Dana, Bielik, Peter, Poláková, Silvia, Šoltys, Katarína, Jatzová, Katarína, and Szemes, Tomáš
- Abstract
The yeast Saccharomyces are widely used to test ecological and evolutionary hypotheses. A large number of nuclear genomic DNA sequences are available, but mitochondrial genomic data are insufficient. We completed mitochondrial DNA (mtDNA) sequencing from Illumina MiSeq reads for all Saccharomyces species. All are circularly mapped molecules decreasing in size with phylogenetic distance from Saccharomyces cerevisiae but with similar gene content including regulatory and selfish elements like origins of replication, introns, free-standing open reading frames or GC clusters. Their most profound feature is species-specific alteration in gene order. The genetic code slightly differs from well-established yeast mitochondrial code as GUG is used rarely as the translation start and CGA and CGC code for arginine. The multilocus phylogeny, inferred from mtDNA, does not correlate with the trees derived from nuclear genes. mtDNA data demonstrate that Saccharomyces cariocanus should be assigned as a separate species and Saccharomyces bayanus CBS 380T should not be considered as a distinct species due to mtDNA nearly identical to Saccharomyces uvarum mtDNA. Apparently, comparison of mtDNAs should not be neglected in genomic studies as it is an important tool to understand the origin and evolutionary history of some yeast species. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
20. ZUBADLO S REŤAZAMI Z BORINKY (OKRES MALACKY, JZ SLOVENSKO).
- Author
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BAZOVSKÝ, IGOR, MAJEROVÁ, HANA, SZABÓOVÁ, DANA, and ARENDT, DARINA
- Published
- 2020
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