Search

Your search keyword '"Swedlow, Jason R."' showing total 430 results
Start Over Author "Swedlow, Jason R."
430 results on '"Swedlow, Jason R."'

1. MITI Minimum Information guidelines for highly multiplexed tissue images

Author

Schapiro, Denis, Yapp, Clarence, Sokolov, Artem, Reynolds, Sheila M., Chen, Yu-An, Sudar, Damir, Xie, Yubin, Muhlich, Jeremy L., Arias-Camison, Raquel, Arena, Sarah, Taylor, Adam J., Nikolov, Milen, Tyler, Madison, Lin, Jia-Ren, Burlingame, Erik A., Network, Human Tumor Atlas, Chang, Young H., Farhi, Samouil L, Thorsson, Vésteinn, Venkatamohan, Nithya, Drewes, Julia L., Pe'er, Dana, Gutman, David A., Herrmann, Markus D., Gehlenborg, Nils, Bankhead, Peter, Roland, Joseph T., Herndon, John M., Snyder, Michael P., Angelo, Michael, Nolan, Garry, Swedlow, Jason R., Schultz, Nikolaus, Merrick, Daniel T., Mazzilli, Sarah A., Cerami, Ethan, Rodig, Scott J., Santagata, Sandro, and Sorger, Peter K.

Subjects
Quantitative Biology - Other Quantitative Biology, Electrical Engineering and Systems Science - Image and Video Processing
Abstract

The imminent release of tissue atlases combining multi-channel microscopy with single cell sequencing and other omics data from normal and diseased specimens creates an urgent need for data and metadata standards that guide data deposition, curation and release. We describe a Minimum Information about highly multiplexed Tissue Imaging (MITI) standard that applies best practices developed for genomics and other microscopy data to highly multiplexed tissue images and traditional histology.

Published
2021

2. OME-Zarr: a cloud-optimized bioimaging file format with international community support

Author

Moore, Josh, Basurto-Lozada, Daniela, Besson, Sébastien, Bogovic, John, Bragantini, Jordão, Brown, Eva M., Burel, Jean-Marie, Casas Moreno, Xavier, de Medeiros, Gustavo, Diel, Erin E., Gault, David, Ghosh, Satrajit S., Gold, Ilan, Halchenko, Yaroslav O., Hartley, Matthew, Horsfall, Dave, Keller, Mark S., Kittisopikul, Mark, Kovacs, Gabor, Küpcü Yoldaş, Aybüke, Kyoda, Koji, le Tournoulx de la Villegeorges, Albane, Li, Tong, Liberali, Prisca, Lindner, Dominik, Linkert, Melissa, Lüthi, Joel, Maitin-Shepard, Jeremy, Manz, Trevor, Marconato, Luca, McCormick, Matthew, Lange, Merlin, Mohamed, Khaled, Moore, William, Norlin, Nils, Ouyang, Wei, Özdemir, Bugra, Palla, Giovanni, Pape, Constantin, Pelkmans, Lucas, Pietzsch, Tobias, Preibisch, Stephan, Prete, Martin, Rzepka, Norman, Samee, Sameeul, Schaub, Nicholas, Sidky, Hythem, Solak, Ahmet Can, Stirling, David R., Striebel, Jonathan, Tischer, Christian, Toloudis, Daniel, Virshup, Isaac, Walczysko, Petr, Watson, Alan M., Weisbart, Erin, Wong, Frances, Yamauchi, Kevin A., Bayraktar, Omer, Cimini, Beth A., Gehlenborg, Nils, Haniffa, Muzlifah, Hotaling, Nathan, Onami, Shuichi, Royer, Loic A., Saalfeld, Stephan, Stegle, Oliver, Theis, Fabian J., and Swedlow, Jason R.

Published
2023
Full Text
View/download PDF

3. Essential Metadata for 3D BRAIN Microscopy

Author

Ropelewski, Alexander J., Rizzo, Megan A., Swedlow, Jason R., Huisken, Jan, Osten, Pavel, Khanjani, Neda, Weiss, Kurt, Bakalov, Vesselina, Engle, Michelle, Gridley, Lauren, Krzyzanowski, Michelle, Madden, Tom, Maiese, Deborah, Waterfield, Justin, Williams, David, Hamilton, Carol, and Huggins, Wayne

Subjects
Quantitative Biology - Other Quantitative Biology
Abstract

Recent advances in fluorescence microscopy techniques and tissue clearing, labeling, and staining provide unprecedented opportunities to investigate brain structure and function. These experiments' images make it possible to catalog brain cell types and define their location, morphology, and connectivity in a native context, leading to a better understanding of normal development and disease etiology. Consistent annotation of metadata is needed to provide the context necessary to understand, reuse, and integrate these data. This report describes an effort to establish metadata standards for 3D microscopy datasets for use by the Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative and the neuroscience research community. These standards were built on existing efforts and developed with input from the brain microscopy community to promote adoption. The resulting Essential Metadata for 3D BRAIN Microscopy includes 91 fields organized into seven categories: Contributors, Funders, Publication, Instrument, Dataset, Specimen, and Image. Adoption of these metadata standards will ensure that investigators receive credit for their work, promote data reuse, facilitate downstream analysis of shared data, and encourage collaboration., Comment: 10 pages, 1 table

Published
2021

4. QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Author

Nelson, Glyn, Boehm, Ulrike, Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Brown, Claire M, Dauphin, Aurelien, Dobbie, Ian M, Eriksson, John E, Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J, Rasse, Tobias M, Resch-Genger, Ute, Schuetz, Lucas C, Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R, Alexopoulos, Ioannis, Aumayr, Karin, Avilov, Sergiy, Bakker, Gert-Jan, Bammann, Rodrigo R, Bassi, Andrea, Beckert, Hannes, Beer, Sebastian, Belyaev, Yury, Bierwagen, Jakob, Birngruber, Konstantin A, Bosch, Manel, Breitlow, Juergen, Cameron, Lisa A, Chalfoun, Joe, Chambers, James J, Chen, Chieh-Li, Conde-Sousa, Eduardo, Corbett, Alexander D, Cordelieres, Fabrice P, Del Nery, Elaine, Dietzel, Ralf, Eismann, Frank, Fazeli, Elnaz, Felscher, Andreas, Fried, Hans, Gaudreault, Nathalie, Goh, Wah Ing, Guilbert, Thomas, Hadleigh, Roland, Hemmerich, Peter, Holst, Gerhard A, Itano, Michelle S, Jaffe, Claudia B, Jambor, Helena K, Jarvis, Stuart C, Keppler, Antje, Kirchenbuechler, David, Kirchner, Marcel, Kobayashi, Norio, Krens, Gabriel, Kunis, Susanne, Lacoste, Judith, Marcello, Marco, Martins, Gabriel G, Metcalf, Daniel J, Mitchell, Claire A, Moore, Joshua, Mueller, Tobias, Nelson, Michael S, Ogg, Stephen, Onami, Shuichi, Palmer, Alexandra L, Paul-Gilloteaux, Perrine, Pimentel, Jaime A, Plantard, Laure, Podder, Santosh, Rexhepaj, Elton, Royon, Arnaud, Saari, Markku A, Schapman, Damien, Schoonderwoert, Vincent, Schroth-Diez, Britta, Schwartz, Stanley, Shaw, Michael, Spitaler, Martin, Stoeckl, Martin T, Sudar, Damir, Teillon, Jeremie, Terjung, Stefan, Thuenauer, Roland, Wilms, Christian D, Wright, Graham D, and Nitschke, Roland

Subjects
Quantitative Biology - Other Quantitative Biology, Physics - Instrumentation and Detectors
Abstract

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common interest in achieving a better understanding of the performance and limitations of microscopes and improved quality control (QC) in light microscopy. The ultimate goal of the QUAREP-LiMi initiative is to establish a set of common QC standards, guidelines, metadata models, and tools, including detailed protocols, with the ultimate aim of improving reproducible advances in scientific research. This White Paper 1) summarizes the major obstacles identified in the field that motivated the launch of the QUAREP-LiMi initiative; 2) identifies the urgent need to address these obstacles in a grassroots manner, through a community of stakeholders including, researchers, imaging scientists, bioimage analysts, bioimage informatics developers, corporate partners, funding agencies, standards organizations, scientific publishers, and observers of such; 3) outlines the current actions of the QUAREP-LiMi initiative, and 4) proposes future steps that can be taken to improve the dissemination and acceptance of the proposed guidelines to manage QC. To summarize, the principal goal of the QUAREP-LiMi initiative is to improve the overall quality and reproducibility of light microscope image data by introducing broadly accepted standard practices and accurately captured image data metrics., Comment: 17 pages, 3 figures, shortened abstract, Co-Lead Authors: Glyn Nelson and Ulrike Boehm, Corresponding author: Roland Nitschke

Published
2021
Full Text
View/download PDF

5. A Global View of Standards for Open Image Data Formats and Repositories

Author

Swedlow, Jason R., Kankaanpää, Pasi, Sarkans, Ugis, Goscinski, Wojtek, Galloway, Graham, Sullivan, Ryan P., Brown, Claire M., Wood, Chris, Keppler, Antje, Loos, Ben, Zullino, Sara, Longo, Dario Livio, Aime, Silvio, and Onami, Shuichi

Subjects
Quantitative Biology - Other Quantitative Biology
Abstract

Biological and biomedical imaging datasets record the constitution, architecture and dynamics of living organisms across several orders of magnitude of space and time. Imaging technologies are now used throughout the life and biomedical sciences to achieve discovery and understanding of biological mechanisms in the basic sciences as well as assessment, diagnosis and therapeutic intervention in clinical trials and animal and human medicine. The universal application and use of imaging raises an important question and opportunity: what is the value and ultimate destination of biological and medical imaging data? In the last few years, several informatics and data science technologies have matured sufficiently so that routine publication of these datasets is now possible. Participants in Global BioImaging from 15 countries and all populated continents have agreed on the need for recommendations and guidelines for the establishment of image data repositories and the formats they use for delivering data to the global scientific community. This white paper presents a shared, global view of criteria for these common, globally applicable guidelines and provisional proposals for open tools and resources that are available now and can provide a foundation for future development.

Published
2020

6. Public archives for biological image data

Author

Ellenberg, Jan, Swedlow, Jason R, Barlow, Mary, Cook, Charles E, Patwardhan, Ardan, Brazma, Alvis, and Birney, Ewan

Subjects
Quantitative Biology - Quantitative Methods
Abstract

Public data archives are the backbone of modern biological and biomedical research. While archives for biological molecules and structures are well-established, resources for imaging data do not yet cover the full range of spatial and temporal scales or application domains used by the scientific community. In the last few years, the technical barriers to building such resources have been solved and the first examples of scientific outputs from public image data resources, often through linkage to existing molecular resources, have been published. Using the successes of existing biomolecular resources as a guide, we present the rationale and principles for the construction of image data archives and databases that will be the foundation of the next revolution in biological and biomedical informatics and discovery., Comment: 13 pages, 1 figure

Published
2018
Full Text
View/download PDF

10. ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data

Author

Wittner, Rudolf, Holub, Petr, Müller, Heimo, Geiger, Joerg, Goble, Carole, Soiland-Reyes, Stian, Pireddu, Luca, Frexia, Francesca, Mascia, Cecilia, Fairweather, Elliot, Swedlow, Jason R., Moore, Josh, Strambio, Caterina, Grunwald, David, Nakae, Hiroki, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Glavic, Boris, editor, Braganholo, Vanessa, editor, and Koop, David, editor

Published
2021
Full Text
View/download PDF

11. MITI minimum information guidelines for highly multiplexed tissue images

Author

Schapiro, Denis, Yapp, Clarence, Sokolov, Artem, Reynolds, Sheila M., Chen, Yu-An, Sudar, Damir, Xie, Yubin, Muhlich, Jeremy, Arias-Camison, Raquel, Arena, Sarah, Taylor, Adam J., Nikolov, Milen, Tyler, Madison, Lin, Jia-Ren, Burlingame, Erik A., Chang, Young H., Farhi, Samouil L., Thorsson, Vésteinn, Venkatamohan, Nithya, Drewes, Julia L., Pe’er, Dana, Gutman, David A., Herrmann, Markus D., Gehlenborg, Nils, Bankhead, Peter, Roland, Joseph T., Herndon, John M., Snyder, Michael P., Angelo, Michael, Nolan, Garry, Swedlow, Jason R., Schultz, Nikolaus, Merrick, Daniel T., Mazzili, Sarah A., Cerami, Ethan, Rodig, Scott J., Santagata, Sandro, and Sorger, Peter K.

Published
2022
Full Text
View/download PDF

12. Standard metadata for 3D microscopy

Author

Ropelewski, Alexander J., Rizzo, Megan A., Swedlow, Jason R., Huisken, Jan, Osten, Pavel, Khanjani, Neda, Weiss, Kurt, Bakalov, Vesselina, Engle, Michelle, Gridley, Lauren, Krzyzanowski, Michelle, Madden, Tom, Maiese, Deborah, Mandal, Meisha, Waterfield, Justin, Williams, David, Hamilton, Carol M., and Huggins, Wayne

Published
2022
Full Text
View/download PDF

14. QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Author

Boehm, Ulrike, Nelson, Glyn, Brown, Claire M., Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Dauphin, Aurelien, Dobbie, Ian M., Eriksson, John E., Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J., Rasse, Tobias M., Resch-Genger, Ute, Schuetz, Lucas C., Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R., and Nitschke, Roland

Published
2021
Full Text
View/download PDF

15. REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology

Author

Sarkans, Ugis, Chiu, Wah, Collinson, Lucy, Darrow, Michele C., Ellenberg, Jan, Grunwald, David, Hériché, Jean-Karim, Iudin, Andrii, Martins, Gabriel G., Meehan, Terry, Narayan, Kedar, Patwardhan, Ardan, Russell, Matthew Robert Geoffrey, Saibil, Helen R., Strambio-De-Castillia, Caterina, Swedlow, Jason R., Tischer, Christian, Uhlmann, Virginie, Verkade, Paul, Barlow, Mary, Bayraktar, Omer, Birney, Ewan, Catavitello, Cesare, Cawthorne, Christopher, Wagner-Conrad, Stephan, Duke, Elizabeth, Paul-Gilloteaux, Perrine, Gustin, Emmanuel, Harkiolaki, Maria, Kankaanpää, Pasi, Lemberger, Thomas, McEntyre, Jo, Moore, Josh, Nicholls, Andrew W., Onami, Shuichi, Parkinson, Helen, Parsons, Maddy, Romanchikova, Marina, Sofroniew, Nicholas, Swoger, Jim, Utz, Nadine, Voortman, Lenard M., Wong, Frances, Zhang, Peijun, Kleywegt, Gerard J., and Brazma, Alvis

Published
2021
Full Text
View/download PDF

16. Bringing Open Data to Whole Slide Imaging

Author

Besson, Sébastien, Leigh, Roger, Linkert, Melissa, Allan, Chris, Burel, Jean-Marie, Carroll, Mark, Gault, David, Gozim, Riad, Li, Simon, Lindner, Dominik, Moore, Josh, Moore, Will, Walczysko, Petr, Wong, Frances, Swedlow, Jason R., Hutchison, David, Editorial Board Member, Kanade, Takeo, Editorial Board Member, Kittler, Josef, Editorial Board Member, Kleinberg, Jon M., Editorial Board Member, Mattern, Friedemann, Editorial Board Member, Mitchell, John C., Editorial Board Member, Naor, Moni, Editorial Board Member, Pandu Rangan, C., Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Terzopoulos, Demetri, Editorial Board Member, Tygar, Doug, Editorial Board Member, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Reyes-Aldasoro, Constantino Carlos, editor, Janowczyk, Andrew, editor, Veta, Mitko, editor, Bankhead, Peter, editor, and Sirinukunwattana, Korsuk, editor

Published
2019
Full Text
View/download PDF

18. IMI European Lead Factory — democratizing access to high-throughput screening

Author

Jones, Philip S., Boucharens, Sylviane, McElroy, Stuart P., Morrison, Angus, Honarnejad, Saman, van Boeckel, Stan, van den Hurk, Helma, Basting, Daniel, Hüser, Jörg, Jaroch, Stefan, Ottow, Eckhard, Benningshof, Jorg, Folmer, Rutger H. A., Leemhuis, Frank, Kramer-Verhulst, Patricia M., Nies, Vera J. M., Orrling, Kristina M., Rijnders, Ton, Pfander, Claudia, Engkvist, Ola, Pairaudeau, Garry, Simpson, Peter B., Ortholand, Jean-Yves, Roche, Didier, Dömling, Alexander, Kühnert, Sven M., Roevens, Peter W. M., van Vlijmen, Herman, van Wanrooij, Eva J. A., Verbruggen, Christophe, Nussbaumer, Peter, Ovaa, Huib, van der Stelt, Mario, Simonsen, Klaus Baek, Tagmose, Lena, Waldmann, Herbert, Duffy, James, Finsinger, Dirk, Jurzak, Mirek, Burgess-Brown, Nicola A., Lee, Wen H., Rutjes, Floris P. J. T., Haag, Hubert, Kallus, Christopher, Mors, Hartmut, Dorval, Thierry, Lesur, Brigitte, Ramon Olayo, Fernando, Hamza, Daniel, Jones, Geraint, Pearce, Christopher, Piechot, Alexander, Tzalis, Dimitrios, Clausen, Mads H., Davis, Jeremy, Derouane, Daphné, Vermeiren, Céline, Kaiser, Markus, Stockman, Robert A., Barrault, Denise V., Pannifer, Andrew D., Swedlow, Jason R., Nelson, Adam S., Orru, Romano V. A., Ruijter, Eelco, van Helden, Steven P., Li, Volkhart M., Vries, Ton, and de Vlieger, Jon S. B.

Published
2022
Full Text
View/download PDF

19. Correction to: ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data

Author

Wittner, Rudolf, primary, Holub, Petr, additional, Müller, Heimo, additional, Geiger, Joerg, additional, Goble, Carole, additional, Soiland-Reyes, Stian, additional, Pireddu, Luca, additional, Frexia, Francesca, additional, Mascia, Cecilia, additional, Fairweather, Elliot, additional, Swedlow, Jason R., additional, Moore, Josh, additional, Strambio, Caterina, additional, Grunwald, David, additional, and Nakae, Hiroki, additional

Published
2021
Full Text
View/download PDF

20. A 3D cellular context for the macromolecular world

Author

Patwardhan, Ardan, Ashton, Alun, Brandt, Robert, Butcher, Sarah, Carzaniga, Raffaella, Chiu, Wah, Collinson, Lucy, Doux, Pascal, Duke, Elizabeth, Ellisman, Mark H, Franken, Erik, Grünewald, Kay, Heriche, Jean-Karim, Koster, Abraham, Kühlbrandt, Werner, Lagerstedt, Ingvar, Larabell, Carolyn, Lawson, Catherine L, Saibil, Helen R, Sanz-García, Eduardo, Subramaniam, Sriram, Verkade, Paul, Swedlow, Jason R, and Kleywegt, Gerard J

Subjects
Biochemistry and Cell Biology, Biological Sciences, Bioengineering, Biomedical Imaging, Generic health relevance, Cells, Data Curation, Electron Microscope Tomography, Humans, Imaging, Three-Dimensional, Macromolecular Substances, Microscopy, Electron, Scanning, Molecular Conformation, Tomography, X-Ray, Chemical Sciences, Medical and Health Sciences, Biophysics, Developmental Biology, Biological sciences, Biomedical and clinical sciences, Chemical sciences
Abstract

We report the outcomes of the discussion initiated at the workshop entitled A 3D Cellular Context for the Macromolecular World and propose how data from emerging three-dimensional (3D) cellular imaging techniques—such as electron tomography, 3D scanning electron microscopy and soft X-ray tomography—should be archived, curated, validated and disseminated, to enable their interpretation and reuse by the biomedical community.

Published
2014

22. Author Correction: QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Author

Boehm, Ulrike, Nelson, Glyn, Brown, Claire M., Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Dauphin, Aurelien, Dobbie, Ian M., Eriksson, John E., Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J., Rasse, Tobias M., Resch-Genger, Ute, Schuetz, Lucas C., Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R., and Nitschke, Roland

Published
2022
Full Text
View/download PDF

23. Sperm Cell Painting: A Mechanism Driven Approach for Drug Discovery in Human Spermatozoa

Author

Johnston, Zoe C., primary, Gruber, Franz S., additional, Myles, Rachel, additional, Kane, Shruti V., additional, Richardson, Anthony, additional, Day, David P., additional, Wilson, Caroline, additional, Read, Kevin D., additional, Gilbert, Ian H., additional, Martins da Silva, Sarah, additional, Barratt, Christopher L. R., additional, and Swedlow, Jason R., additional

Published
2023
Full Text
View/download PDF

25. Sperm Toolbox—A selection of small molecules to study human spermatozoa.

Author

Gruber, Franz S., Richardson, Anthony, Johnston, Zoe C., Myles, Rachel, Norcross, Neil R., Day, David P., Georgiou, Irene, Sesma-Sanz, Laura, Wilson, Caroline, Read, Kevin D., Martins da Silva, Sarah, Barratt, Christopher L. R., Gilbert, Ian H., and Swedlow, Jason R.

Subjects
SMALL molecules, REPRODUCTIVE technology, ACROSOME reaction, MALE contraceptives, HUMAN experimentation, SPERMATOZOA, FROZEN semen
Abstract

Male contraceptive options and infertility treatments are limited, and almost all innovation has been limited to updates to medically assisted reproduction protocols and methods. To accelerate the development of drugs that can either improve or inhibit fertility, we established a small molecule library as a toolbox for assay development and screening campaigns using human spermatozoa. We have profiled all compounds in the Sperm Toolbox in several automated high-throughput assays that measure stimulation or inhibition of sperm motility or the acrosome reaction. We have assayed motility under non-capacitating and capacitating conditions to distinguish between pathways operating under these different physiological states. We also assayed cell viability to ensure any effects on sperm function are specific. A key advantage of our studies is that all compounds are assayed together in the same experimental conditions, which allows quantitative comparisons of their effects in complementary functional assays. We have combined the resulting datasets to generate fingerprints of the Sperm Toolbox compounds on sperm function. The data are included in an on-line R-based app for convenient querying. [ABSTRACT FROM AUTHOR]

Published
2024
Full Text
View/download PDF

27. Bringing Open Data to Whole Slide Imaging

Author

Besson, Sébastien, primary, Leigh, Roger, additional, Linkert, Melissa, additional, Allan, Chris, additional, Burel, Jean-Marie, additional, Carroll, Mark, additional, Gault, David, additional, Gozim, Riad, additional, Li, Simon, additional, Lindner, Dominik, additional, Moore, Josh, additional, Moore, Will, additional, Walczysko, Petr, additional, Wong, Frances, additional, and Swedlow, Jason R., additional

Published
2019
Full Text
View/download PDF

30. Sperm Toolbox - A selection of small molecules to study human spermatozoa

Author

Gruber, Franz Sebastian, primary, Richardson, Anthony, additional, Johnston, Zoe C, additional, Myles, Rachel, additional, Norcross, Neil, additional, Day, David, additional, Georgiou, Irene, additional, Sesma Sanz, Laura, additional, Wilson, Caroline, additional, Read, Kevin D, additional, Martins da Silva, Sarah, additional, Barratt, Christopher LR, additional, Gilbert, Ian H, additional, and Swedlow, Jason R, additional

Published
2023
Full Text
View/download PDF

31. Toward a common standard for data and specimen provenance in life sciences

Author

Wittner, Rudolf, primary, Holub, Petr, additional, Mascia, Cecilia, additional, Frexia, Francesca, additional, Müller, Heimo, additional, Plass, Markus, additional, Allocca, Clare, additional, Betsou, Fay, additional, Burdett, Tony, additional, Cancio, Ibon, additional, Chapman, Adriane, additional, Chapman, Martin, additional, Courtot, Mélanie, additional, Curcin, Vasa, additional, Eder, Johann, additional, Elliot, Mark, additional, Exter, Katrina, additional, Goble, Carole, additional, Golebiewski, Martin, additional, Kisler, Bron, additional, Kremer, Andreas, additional, Leo, Simone, additional, Lin‐Gibson, Sheng, additional, Marsano, Anna, additional, Mattavelli, Marco, additional, Moore, Josh, additional, Nakae, Hiroki, additional, Perseil, Isabelle, additional, Salman, Ayat, additional, Sluka, James, additional, Soiland‐Reyes, Stian, additional, Strambio‐De‐Castillia, Caterina, additional, Sussman, Michael, additional, Swedlow, Jason R., additional, Zatloukal, Kurt, additional, and Geiger, Jörg, additional

Published
2023
Full Text
View/download PDF

32. OME-Zarr: a cloud-optimized bioimaging file format with international community support

Author

Moore, Josh, primary, Basurto-Lozada, Daniela, additional, Besson, Sébastien, additional, Bogovic, John, additional, Bragantini, Jordão, additional, Brown, Eva M., additional, Burel, Jean-Marie, additional, Casas Moreno, Xavier, additional, de Medeiros, Gustavo, additional, Diel, Erin E., additional, Gault, David, additional, Ghosh, Satrajit S., additional, Gold, Ilan, additional, Halchenko, Yaroslav O., additional, Hartley, Matthew, additional, Horsfall, Dave, additional, Keller, Mark S., additional, Kittisopikul, Mark, additional, Kovacs, Gabor, additional, Küpcü Yoldaş, Aybüke, additional, Kyoda, Koji, additional, le Tournoulx de la Villegeorges, Albane, additional, Li, Tong, additional, Liberali, Prisca, additional, Lindner, Dominik, additional, Linkert, Melissa, additional, Lüthi, Joel, additional, Maitin-Shepard, Jeremy, additional, Manz, Trevor, additional, Marconato, Luca, additional, McCormick, Matthew, additional, Lange, Merlin, additional, Mohamed, Khaled, additional, Moore, William, additional, Norlin, Nils, additional, Ouyang, Wei, additional, Özdemir, Bugra, additional, Palla, Giovanni, additional, Pape, Constantin, additional, Pelkmans, Lucas, additional, Pietzsch, Tobias, additional, Preibisch, Stephan, additional, Prete, Martin, additional, Rzepka, Norman, additional, Samee, Sameeul, additional, Schaub, Nicholas, additional, Sidky, Hythem, additional, Solak, Ahmet Can, additional, Stirling, David R., additional, Striebel, Jonathan, additional, Tischer, Christian, additional, Toloudis, Daniel, additional, Virshup, Isaac, additional, Walczysko, Petr, additional, Watson, Alan M., additional, Weisbart, Erin, additional, Wong, Frances, additional, Yamauchi, Kevin A., additional, Bayraktar, Omer, additional, Cimini, Beth A., additional, Gehlenborg, Nils, additional, Haniffa, Muzlifah, additional, Hotaling, Nathan, additional, Onami, Shuichi, additional, Royer, Loic A., additional, Saalfeld, Stephan, additional, Stegle, Oliver, additional, Theis, Fabian J., additional, and Swedlow, Jason R., additional

Published
2023
Full Text
View/download PDF

36. Publishing and sharing multi-dimensional image data with OMERO

Author

Burel, Jean-Marie, Besson, Sébastien, Blackburn, Colin, Carroll, Mark, Ferguson, Richard K., Flynn, Helen, Gillen, Kenneth, Leigh, Roger, Li, Simon, Lindner, Dominik, Linkert, Melissa, Moore, William J., Ramalingam, Balaji, Rozbicki, Emil, Tarkowska, Aleksandra, Walczysko, Petr, Allan, Chris, Moore, Josh, and Swedlow, Jason R.

Published
2015
Full Text
View/download PDF

41. Metadata matters: access to image data in the real world

Author

Linkert, Melissa, Rueden, Curtis T., Allan, Chris, Burel, Jean-Marie, Moore, Will, Patterson, Andrew, Loranger, Brian, Moore, Josh, Neves, Carlos, MacDonald, Donald, Tarkowska, Aleksandra, Sticco, Caitlin, Hill, Emma, Rossner, Mike, Eliceiri, Kevin W., and Swedlow, Jason R.

Published
2010

43. Building a Scientific Data Grid with DiGS

Author

Beckett, Mark G., Allton, Chris R., Davies, Christine T. H., Davis, Ilan, Flynn, Jonathan M., Grant, Eilidh J., Hamilton, Russell S., Irving, Alan C., Kenway, R. D., Ostrowski, Radoslaw H., Perry, James T., Swedlow, Jason R., and Trew, Arthur

Published
2009
Full Text
View/download PDF

49. IMI European Lead Factory — democratizing access to high-throughput screening

Author

Jones, Philip S., primary, Boucharens, Sylviane, additional, McElroy, Stuart P., additional, Morrison, Angus, additional, Honarnejad, Saman, additional, van Boeckel, Stan, additional, van den Hurk, Helma, additional, Basting, Daniel, additional, Hüser, Jörg, additional, Jaroch, Stefan, additional, Ottow, Eckhard, additional, Benningshof, Jorg, additional, Folmer, Rutger H. A., additional, Leemhuis, Frank, additional, Kramer-Verhulst, Patricia M., additional, Nies, Vera J. M., additional, Orrling, Kristina M., additional, Rijnders, Ton, additional, Pfander, Claudia, additional, Engkvist, Ola, additional, Pairaudeau, Garry, additional, Simpson, Peter B., additional, Ortholand, Jean-Yves, additional, Roche, Didier, additional, Dömling, Alexander, additional, Kühnert, Sven M., additional, Roevens, Peter W. M., additional, van Vlijmen, Herman, additional, van Wanrooij, Eva J. A., additional, Verbruggen, Christophe, additional, Nussbaumer, Peter, additional, Ovaa, Huib, additional, van der Stelt, Mario, additional, Simonsen, Klaus Baek, additional, Tagmose, Lena, additional, Waldmann, Herbert, additional, Duffy, James, additional, Finsinger, Dirk, additional, Jurzak, Mirek, additional, Burgess-Brown, Nicola A., additional, Lee, Wen H., additional, Rutjes, Floris P. J. T., additional, Haag, Hubert, additional, Kallus, Christopher, additional, Mors, Hartmut, additional, Dorval, Thierry, additional, Lesur, Brigitte, additional, Ramon Olayo, Fernando, additional, Hamza, Daniel, additional, Jones, Geraint, additional, Pearce, Christopher, additional, Piechot, Alexander, additional, Tzalis, Dimitrios, additional, Clausen, Mads H., additional, Davis, Jeremy, additional, Derouane, Daphné, additional, Vermeiren, Céline, additional, Kaiser, Markus, additional, Stockman, Robert A., additional, Barrault, Denise V., additional, Pannifer, Andrew D., additional, Swedlow, Jason R., additional, Nelson, Adam S., additional, Orru, Romano V. A., additional, Ruijter, Eelco, additional, van Helden, Steven P., additional, Li, Volkhart M., additional, Vries, Ton, additional, and de Vlieger, Jon S. B., additional

Published
2021
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results