93 results on '"Svetlana A. Konnova"'
Search Results
2. Elucidation of a masked repeating structure of the O-specific polysaccharide of the halotolerant soil bacteria Azospirillum halopraeferens Au4
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Elena N. Sigida, Yuliya P. Fedonenko, Alexander S. Shashkov, Nikolay P. Arbatsky, Evelina L. Zdorovenko, Svetlana A. Konnova, Vladimir V. Ignatov, and Yuriy A. Knirel
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Azospirillum halopraeferens ,bacterial polysaccharide structure ,lipopolysaccharide ,O-specific polysaccharide ,Smith degradation ,triflic acid solvolysis ,Science ,Organic chemistry ,QD241-441 - Abstract
An O-specific polysaccharide was obtained by mild acid hydrolysis of the lipopolysaccharide isolated by the phenol–water extraction from the halotolerant soil bacteria Azospirillum halopraeferens type strain Au4. The polysaccharide was studied by sugar and methylation analyses, selective cleavages by Smith degradation and solvolysis with trifluoroacetic acid, one- and two-dimensional 1H and 13C NMR spectroscopy. The following masked repeating structure of the O-specific polysaccharide was established: →3)-α-L-Rhap2Me-(1→3)-[β-D-Glcp-(1→4)]-α-D-Fucp-(1→2)-β-D-Xylp-(1→, where non-stoichiometric substituents, an O-methyl group (~45%) and a side-chain glucose residue (~65%), are shown in italics.
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- 2016
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3. Structural characterization and physicochemical properties of the exopolysaccharide produced by the moderately halophilic bacterium Chromohalobacter salexigens, strain 3EQS1
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Ibrahim M. Ibrahim, Yuliya P. Fedonenko, Elena N. Sigida, Maxim S. Kokoulin, Vyacheslav S. Grinev, Ivan G. Mokrushin, Gennady L. Burygin, Andrey M. Zakharevich, Alexander A. Shirokov, and Svetlana A. Konnova
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Molecular Medicine ,General Medicine ,Microbiology - Published
- 2023
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4. Evaluation of the secondary structure of poly-γ-glutamic acid produced by Bacillus subtilis EGP5QL12 by circular dichroism spectroscopy method
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Yulia P. Fedonenko, Marina V. Chernykh, Svetlana A. Konnova, Elena N. Sigida, I. M. Ibrahim, and Vyacheslav S. Grinev
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Circular dichroism ,Crystallography ,biology ,Chemistry ,Bacillus subtilis ,Glutamic acid ,biology.organism_classification ,Protein secondary structure - Abstract
An extracellular polymer was isolated from the culture liquid of Bacillus subtilis EGP5QL12 with the yield of 5,6 g/L. On the basis of the data of thin layer chromatography, colorimetric analyses and FTIR spectroscopy, it was established that the polymer is poly-γ- glutamic acid (PGA). PGA is widely used in medicine, cosmetology and the food industry due to its ability to bind water and metal ions. To assess the biotechnological potential of the isolated polymer and predict the possibilities of its application in various fields of the national economy, it is necessary to analyze the characteristic spectral features that make it possible to establish its secondary structure. The isolated PGA preparation was analyzed by circular dichroism spectroscopy at various pH values. According to the results of this study, it was found that the polymer forms predominantly β-structures with a low proportion of irregular structures and α-helices, which gives it a high potential for creating hydrogels and composite materials.
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- 2021
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5. Obtaining viable Azospirillum brasilense SR80 cells encapsulated in alginate hydrogel
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M. A. Kupryashina, Timofey Pylaev, Andrey M. Zaharevich, Aleksandr V. Kovrizhnikov, and Svetlana A. Konnova
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biology ,Chemistry ,Alginate hydrogel ,Azospirillum brasilense ,biology.organism_classification ,Microbiology - Abstract
Significant researches aimed at the greening of agro-industrial production are focused on obtaining immobilized bacterial preparations with preserved proliferative function and metabolic activity. Herein, we investigated the possibility of bacteria of the genus Azospirillum to be immobilized in Ca-alginate beads. A. brasilense SR80 cells, encapsulated in an alginate hydrogel, were obtained using the “soft” immobilization method based on physical binding. We demonstrated the retained respiratory activity and growth ability of the bacteria during immobilization, thus confirming the advantageous prospects of alginate templates for azospirilla encapsulation.
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- 2021
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6. Urogenital Chlamydia trachomatis multilocus sequence types and genovar distribution in chlamydia infected patients in a multi-ethnic region of Saratov, Russia.
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Valentina A Feodorova, Svetlana S Konnova, Yury V Saltykov, Sergey S Zaitsev, Irina A Subbotina, Tatiana I Polyanina, Sergey S Ulyanov, Susanna L Lamers, Charlotte A Gaydos, Thomas C Quinn, and Vladimir L Motin
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Medicine ,Science - Abstract
BACKGROUND:This is the first report to characterize the prevalence and genovar distribution of genital chlamydial infections among random heterosexual patients in the multi-ethnic Saratov Region, located in Southeast Russia. METHODS:Sixty-one clinical samples (cervical or urethral swabs) collected from a random cohort of 856 patients (7.1%) were C. trachomatis (CT) positive in commercial nucleic acid amplification tests (NAATs) and duplex TaqMan PCRs. RESULTS:Sequence analysis of the VDII region of the ompA gene revealed seven genovars of C. trachomatis in PCR-positive patients. The overall genovars were distributed as E (41.9%), G (21.6%), F (13.5%), K (9.5%), D (6.8%), J (4.1%), and H (2.7%). CT-positive samples were from males (n = 12, 19.7%), females (n = 42, 68.8%), and anonymous (n = 7, 11.5%) patients, with an age range of 19 to 45 years (average 26.4), including 12 different ethnic groups representative of this region. Most patients were infected with a single genovar (82%), while 18% were co-infected with either two or three genovars. The 1156 bp-fragment of the ompA gene was sequenced in 46 samples to determine single nucleotide polymorphisms (SNP) among isolates. SNP-based subtyping and phylogenetic reconstruction revealed the presence of 13 variants of the ompA gene, such as E (E1, E2, E6), G (G1, G2, G3, G5), F1, K, D (D1, Da2), J1, and H2. Differing genovar distribution was identified among urban (E>G>F) and rural (E>K) populations, and in Slavic (E>G>D) and non-Slavic (E>G>K) ethnic groups. Multilocus sequence typing (MLST) determined five sequences types (STs), such as ST4 (56%, 95% confidence interval, CI, 70.0 to 41.3), ST6 (10%, 95% CI 21.8 to 3.3), ST9 (22%, 95% CI 35.9 to 11.5), ST10 (2%, 95% CI 10.7 to 0.05) and ST38 (10%, 95% CI 21.8 to 3.3). Thus, the most common STs were ST4 and ST9. CONCLUSION:C. trachomatis is a significant cause of morbidity among random heterosexual patients with genital chlamydial infections in the Saratov Region. Further studies should extend this investigation by describing trends in a larger population, both inside and outside of the Saratov Region to clarify some aspects for the actual application of C. trachomatis genotype analysis for disease control.
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- 2018
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7. Structure and antiproliferative activity of the polysaccharide from Halomonas aquamarina related to Cobetia pacifica
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Maxim S. Kokoulin, Elena N. Sigida, Alexandra S. Kuzmich, Ibrahim M. Ibrahim, Yulia P. Fedonenko, and Svetlana A. Konnova
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Halomonadaceae ,Polymers and Plastics ,Polysaccharides ,Sulfates ,Organic Chemistry ,Materials Chemistry ,Humans ,Halomonas ,Galactans - Abstract
Here, the results of the structure and the activity of capsular polysaccharides isolated from the Halomonas aquamarina EG27S8QL and Cobetia pacifica KMM3878 have been described. Both polysaccharides were studied by spectroscopic and chemical methods and were found to be structurally related sulfated galactans differing in the position of the sulfate group: →6)-β-D-Galp3S-(1 → 4)-β-D-Galp3S-(1 → 6)-β-D-Galp3,4(S-Pyr)-(1 → [H. aquamarina EG27S8QL] →6)-β-D-Gal-(1 → 4)-β-D-Gal2,3S-(1 → 6)-β-D-Gal3,4(S-Pyr)-(1 → [C. pacifica KMM3878] Structure of the CPS from H. aquamarina EG27S8QL has not been hitherto reported, whereas the CPS from C. pacifica KMM3878 was identical to the previously studied O-polysaccharide. The CPSs exhibited an antiproliferative effect and suppressed the colony formation of DLD-1 and MCF-7 cells in a different manner.
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- 2022
8. Structural characterization and physicochemical properties of exopolysaccharide from moderate halophile Chromohalobacter salexigens, strain 3EQS1
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Ibrahim M. Ibrahim, Yuliya P. Fedonenko, Elena N. Sigida, Maxim S. Kokoulin, Vyacheslav S. Grinev, Ivan G. Mokrushin, Gennady L. Burygin, Andrey M. Zakharevich, Alexander A. Shirokov, and Svetlana A. Konnova
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A strain, 3EQS1, was isolated from a salt sample taken from Lake Qarun (Fayoum Province, Egypt). On the basis of physiological, biochemical, and phylogenetic analyses, the strain was classified as Chromohalobacter salexigens. By 72 h of growth at 25 °С, strain 3EQS1 produced large amounts (15.1 g L− 1) of exopolysaccharide (EPS) in a liquid mineral medium (initial рН 8.0) containing 10% sucrose and 10% NaCl. The EPS was precipitated from the cell-free culture medium with chilled ethanol and was purified by gel-permeation and anion-exchange chromatography. The molecular mass of the EPS was 0.9×106 Da. Chemical analyses, Fourier transform infrared spectroscopy, and nuclear magnetic resonance spectroscopy showed that the EPS was a linear β-d-(2→6)-linked fructan (levan). In aqueous solution, the EPS tended to form supramolecular aggregates with a critical aggregation concentration of 240 µg mL-1. The EPS had high emulsifying activity (E24, %) against kerosene (31.2 ± 0.4%), sunflower oil (76.9 ± 1.3%), and crude oil (98.9 ± 0.8%), and it also had surfactant properties. A 0.1% (w/v) aqueous EPS solution reduced the surface tension of water by 11.9%. The levan of C. salexigens 3EQS1 may be useful in various biotechnological processes.
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- 2022
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9. Halloysite/Keratin Nanocomposite for Human Hair Photoprotection Coating
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Gölnur Fakhrullina, Stefana Milioto, Svetlana A. Konnova, Rawil Fakhrullin, Giuseppe Cavallaro, Farida Akhatova, Giuseppe Lazzara, Yuri Lvov, Cavallaro G., Milioto S., Konnova S., Fakhrullina G., Akhatova F., Lazzara G., Fakhrullin R., and Lvov Y.
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Adult ,Nanotube ,Materials science ,Ultraviolet Rays ,Radiation-Protective Agents ,halloysite nanotubes ,02 engineering and technology ,engineering.material ,010402 general chemistry ,01 natural sciences ,Halloysite ,Nanocomposites ,Colloid ,Coating ,Keratin ,Humans ,General Materials Science ,composite ,keratin ,Settore CHIM/02 - Chimica Fisica ,chemistry.chemical_classification ,Nanotubes ,Nanocomposite ,integumentary system ,021001 nanoscience & nanotechnology ,hair treatment ,0104 chemical sciences ,Isoelectric point ,chemistry ,Chemical engineering ,UV-protective coating ,engineering ,Clay ,Keratins ,Female ,0210 nano-technology ,Research Article ,Hair ,Protein adsorption - Abstract
We propose a novel keratin treatment of human hair by its aqueous mixtures with natural halloysite clay nanotubes. The loaded clay nanotubes together with free keratin produce micrometer-thick protective coating on hair. First, colloidal and structural properties of halloysite/keratin dispersions and the nanotube loaded with this protein were investigated. Above the keratin isoelectric point (pH = 4), the protein adsorption into the positive halloysite lumen is favored because of the electrostatic attractions. The ζ-potential magnitude of these core-shell particles increased from -35 (in pristine form) to -43 mV allowing for an enhanced colloidal stability (15 h at pH = 6). This keratin-clay tubule nanocomposite was used for the immersion treatment of hair. Three-dimensional-measuring laser scanning microscopy demonstrated that 50-60% of the hair surface coverage can be achieved with 1 wt % suspension application. Hair samples have been exposed to UV irradiation for times up to 72 h to explore the protection capacity of this coating by monitoring the cysteine oxidation products. The nanocomposites of halloysite and keratin prevent the deterioration of human hair as evident by significant inhibition of cysteic acid. The successful hair structure protection was also visually confirmed by atomic force microscopy and dark-field hyperspectral microscopy. The proposed formulation represents a promising strategy for a sustainable medical coating on the hair, which remediates UV irradiation stress.
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- 2020
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10. The Structure of the O-Specific Polysaccharide and Lipid A of the Type Strain Azospirillum rugosum DSM-19657
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Vyacheslav S. Grinev, Pavel S. Dmitrenok, Maxim S. Kokoulin, Svetlana A. Konnova, Elena N. Sigida, and Yuliya P. Fedonenko
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0301 basic medicine ,chemistry.chemical_classification ,biology ,Lipopolysaccharide ,Strain (chemistry) ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,Nuclear magnetic resonance spectroscopy ,Azospirillum brasilense ,Polysaccharide ,biology.organism_classification ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Lipid A ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Bioorganic chemistry ,Bacteria - Abstract
The paper reports the structural study of the lipopolysaccharide from the type strain of the soil nitrogen-fixing bacterium Azospirillum rugosum isolated from oil-polluted soils. Based on the chemical analysis and 1D- and 2D 1H and 13С NMR spectroscopy data it has been demonstrated that the O-specific polysaccharide consists of the two types of repeating units identical to those previously described for the O-specific polysaccharide of the Azospirillum brasilense strain Jm125A2. Structural analysis of the lipid A using gas-liquid chromatography (GLC) and MALDI mass spectrometry revealed the presence of penta-, tetra-, and triacylated species. The primary fatty acids in the lipid A are the N-linked 16:0(3-OH) and О-linked 14:0(3-OH). Microheterogeneity within each species arises from the presence of different secondary fatty acids (16:0, 18:1, or 19:0) acylating the 16:0(3-OH) acid of the distal GlcN ring.
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- 2020
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11. Clay Nanotube Liquid Marbles Enhanced with Inner Biofilm Formation for the Encapsulation and Storage of Bacteria at Room Temperature
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Vijay T. John, Naureen Rahman, Donghui Zhang, Svetlana A. Konnova, Abhishek Panchal, Rawil Fakhrullin, Evgenii Ivanov, Diane A. Blake, and Yuri Lvov
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Nanotube ,Materials science ,biology ,Chemical engineering ,engineering ,Biofilm ,General Materials Science ,engineering.material ,biology.organism_classification ,Halloysite ,Bacteria ,Pickering emulsion - Abstract
Reversing the organization of oil-in-water Pickering emulsion formed with halloysite nanoclay, liquid marbles were created with water droplets encapsulated by a layer of clay nanotubes. After incor...
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- 2019
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12. Bioremediation potential of a halophilic Halobacillus sp. strain, EG1HP4QL: exopolysaccharide production, crude oil degradation, and heavy metal tolerance
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Кhaled Elbanna, Elena N. Sigida, Yulia P. Fedonenko, Anna Muratova, Svetlana A. Konnova, Elena Valentinovna Lyubun, and I. M. Ibrahim
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Sucrose ,food.ingredient ,Mannose ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Bioremediation ,food ,Metals, Heavy ,Monosaccharide ,Halobacillus ,Food science ,Phylogeny ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Strain (chemistry) ,030306 microbiology ,Sunflower oil ,General Medicine ,Halophile ,Biodegradation, Environmental ,Petroleum ,chemistry ,Molecular Medicine ,Egypt ,Composition (visual arts) - Abstract
A halophilic bacterial strain, EG1HP4QL, was isolated from a salt sample from Lake Qarun, Fayoum Province, Egypt. Morphological, physiological, biochemical, and phylogenetic analyses indicated that the strain belonged to the genus Halobacillus. Strain EG1HP4QL produced an extracellular polysaccharide (EPS), with production peaking (5.9 g L−1) during growth on medium S-G containing 2% (w/v) sucrose at 35 °C (pH 8.0). The EPS had significant emulsifying activity (E24 %) against kerosene (65.7 ± 0.8%), o-xylene (64.0 ± 1%), and sunflower oil (44.7 ± 0.5%). The composition of the EPS included two polymers—a negatively charged and a neutral one (~ 3:1)—in which mannose and glucose were the main neutral monosaccharide constituents. Strain EG1HP4QL was able to utilize crude oil (35.3%) as the sole carbon source within 12 days. The minimum inhibitory concentrations of heavy metals [Zn(II), Cd(II), Pb(II), Ni(II), and Cu(II)] for strain EG1HP4QL were 1.0, 2.0, 2.0, 2.5, and 5 mM, respectively.
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- 2019
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13. Structure of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71T
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Elena N. Sigida, Yuliya P. Fedonenko, Evelina L. Zdorovenko, Alexander S. Shashkov, Svetlana A. Konnova, and Yuriy A. Knirel
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Magnetic Resonance Spectroscopy ,Stereochemistry ,010402 general chemistry ,Rhizobacteria ,Polysaccharide ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,Polysaccharides ,Carbohydrate Conformation ,Tetrasaccharide ,Sugar ,chemistry.chemical_classification ,biology ,Strain (chemistry) ,010405 organic chemistry ,Chemistry ,Hydrolysis ,Organic Chemistry ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,Acid hydrolysis ,Azospirillum doebereinerae ,Azospirillum ,Heteronuclear single quantum coherence spectroscopy - Abstract
O-specific polysaccharide was obtained by mild acid hydrolysis of the lipopolysaccharide of plant-growth-promoting rhizobacteria Azospirillum doebereinerae GSF71T and studied by sugar analysis along with 1H and 13C NMR spectroscopy, including 2D 1H,1H COSY, TOCSY, ROESY, 1H,13C HSQC, and HMBC experiments. It was established that the polysaccharide is linear and consists of tetrasaccharide repeating units with the following structure.
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- 2019
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14. Structural studies of O-specific polysaccharide(s) and biological activity toward plants of the lipopolysaccharide from Azospirillum brasilense SR8
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Evelina L. Zdorovenko, Y. A. Knirel, A. V. Shelud’ko, Elena N. Sigida, Svetlana A. Konnova, Philip V. Toukach, Yuliya P. Fedonenko, and A. S. Shashkov
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Lipopolysaccharides ,Lipopolysaccharide ,Proton Magnetic Resonance Spectroscopy ,Azospirillum brasilense ,02 engineering and technology ,Root hair ,Polysaccharide ,Plant Roots ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,Carbon-13 Magnetic Resonance Spectroscopy ,Molecular Biology ,Microbial inoculant ,Triticum ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Chemistry ,Chemotaxis ,O Antigens ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Seedlings ,Acid hydrolysis ,Adsorption ,0210 nano-technology ,Heteronuclear single quantum coherence spectroscopy ,Bacteria - Abstract
Lipopolysaccharide (LPS) was extracted from dry bacterial cells of plant-growth-promoting bacterium Azospirillum brasilense SR8 (IBPPM 5). The O-specific polysaccharide (OPS) was obtained by mild acid hydrolysis of the lipopolysaccharide and studied by sugar analysis, 1H and 13C NMR spectroscopy, including 1H,1H COSY, TOCSY, ROESY, and 1H,13C HSQC and HMBC experiments, computational NMR-based structure analysis, and Smith degradation. The OPS was shown to contain two types of repeating units of the following structure: Both OPS structures are present in A. brasilense 54, from which structure 1 has been reported earlier (Fedonenko et al., 2011), whereas to our knowledge structure 2 has not been hitherto found in bacterial saccharides. Treatment of wheat seedling roots with LPS of A. brasilense SR8 increased the number of root hair deformations as compared to seedlings grown without LPS, but had no effect on adsorption of the bacteria to the root surface. A. brasilense SR8 was able to utilize LPS of several structurally related Azospirillum strains.
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- 2019
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15. OPTIMIZATION OF CONDITIONS FOR OBTAINING FLOCCULATING CULTURES OF BACTERIA AZOSPIRILLUM BRASILENSE Sp7 AND Sp245 AND MONOSACCHARIDE COMPOSITION OF THEIR GLYCOPOLYMERS
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Elena N. Sigida, S. S. Yevstigneyeva, Svetlana A. Konnova, D. A. Rybal’chenko, and Yu. P. Fedonenko
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Flocculation ,biology ,Chemistry ,Food science ,Azospirillum brasilense ,biology.organism_classification ,Bacteria ,Monosaccharide composition - Published
- 2019
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16. Structure of the O-specific polysaccharide from a halophilic bacterium Halomonas ventosae RU5S2EL
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Elena N. Sigida, Maxim S. Kokoulin, I. M. Ibrahim, Svetlana A. Konnova, and Yulia P. Fedonenko
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chemistry.chemical_classification ,biology ,010405 organic chemistry ,Chemistry ,Stereochemistry ,Organic Chemistry ,O Antigens ,Salt (chemistry) ,General Medicine ,010402 general chemistry ,Polysaccharide ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Halophile ,0104 chemical sciences ,Analytical Chemistry ,Halomonas ventosae ,Carbohydrate Sequence ,Acid hydrolysis ,Halomonas ,Sugar ,Heteronuclear single quantum coherence spectroscopy ,Bacteria - Abstract
Halomonas ventosae RU5S2EL, a halophilic Gram-negative bacterium isolated from salt sediments of lake Elton (Russia), was cultivated and the lipopolysaccharide was extracted by the Westphal procedure. The O-specific polysaccharide (OPS) was obtained by mild acid hydrolysis of the lipopolysaccharide and was studied by sugar analysis along with 1H and 13C NMR spectroscopy, including 1H,1H COSY, TOCSY, ROESY, 1H,13C HSQC, and HMBC experiments as well as Smith degradation. The OPS was found to consist of branched pentasaccharide repeating units of the following structure.
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- 2019
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17. Clay Nanotube Immobilization on Animal Hair for Sustained Anti-Lice Protection
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Naureen Rahman, Svetlana A. Konnova, Anna Stavitskaya, Faith Hannah Scott, Yuri Lvov, Gӧlnur Fakhrullina, Rawil Fakhrullin, and Farida Akhatova
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Nanotube ,Pharmaceutical Science ,hair surface engineering ,Close relatives ,engineering.material ,Halloysite ,Article ,Guinea pig ,Pharmacy and materia medica ,parasitic diseases ,medicine ,Food science ,halloysite ,Animal hair ,Wax ,integumentary system ,Chemistry ,fungi ,capybara ,self-assembly ,RS1-441 ,antiparasitic formulations ,visual_art ,visual_art.visual_art_medium ,engineering ,topical drug administration ,Drug carrier ,guinea pig ,Permethrin ,medicine.drug - Abstract
Topical administration of drugs is required for the treatment of parasitic diseases and insect infestations, therefore, fabrication of nanoscale drug carriers for effective insecticide topical delivery is needed. Here we report the enhanced immobilization of halloysite tubule nanoclay onto semiaquatic capybaras which have hydrophobic hair surfaces as compared to their close relatives, land-dwelling guinea pigs, and other agricultural livestock. The hair surface of mammals varies in hydrophobicity having a cortex surrounded by cuticles. Spontaneous 1–2 µm thick halloysite hair coverages on the semi-aquatic rodent capybara, non-aquatic rodent guinea pig, and farm goats were compared. The best coating was found for capybara due to the elevated 5 wt% wax content. As a result, we suggest hair pretreatment with diluted wax for enhanced nanoclay adsorption. The formation of a stable goat hair coverage with a 2–3 µm halloysite layer loaded with permethrin insecticide allowed for long-lasting anti-parasitic protection, enduring multiple rain wettings and washings. We expect that our technology will find applications in animal parasitosis protection and may be extended to prolonged human anti-lice treatment.
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- 2021
18. In vitro evaluation of some halophilic bacterial isolates as biofertilizers
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I. M. Ibrahim, Svetlana A. Konnova, Yu. P. Fedonenko, and E. A. Samsonova
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Biofertilizer ,Biology ,Halophile ,In vitro ,Microbiology - Abstract
For six strains of halophilic bacteria, nitrogen fixation ability, production of phytohormones and siderophores, the solubilization of phosphates, and heavy metal resistance were revealed.
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- 2020
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19. Characteristics of the polysaccharide-producing culture Haloterrigena saccharevitans EG3QL57 isolated from the saltworks at lake Karun (Egypt)
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I. M. Ibrahim, Yu. P. Fedonenko, Svetlana A. Konnova, and Elena N. Sigida
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chemistry.chemical_classification ,Haloterrigena saccharevitans ,chemistry ,Botany ,Biology ,Polysaccharide - Abstract
According to the physiological-morphological and molecular-biological characteristics, the halophilic representative of archaea strain-isolate from the saltworks of lake Karun (Egypt) was identified as Haloterrigena saccharevitans EG3QL57. The ability of H. saccharevitans EG3QL57 to utilize oil with an efficiency of 27.4%, resistance to the presence of concentrations of up to 5 mm of heavy metals in the growth medium is shown. It is shown that when the growth conditions of microorganisms are optimized, they produce up to 2.3 g/l of exopolysaccharides (EPS).
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- 2020
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20. Bioremediation potential of a halophilic bacterium Chromohalobacter salexigens EG1QL3: exopolysaccharide production, crude oil degradation, and heavy metal tolerance
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V. I. Safronova, Yu. P. Fedonenko, Maxim S. Kokoulin, Svetlana A. Konnova, Elena N. Sigida, A. Yu. Muratova, and I. M. Ibrahim
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Metal ,Chromohalobacter salexigens ,Bioremediation ,biology ,Chemistry ,visual_art ,visual_art.visual_art_medium ,Degradation (geology) ,Food science ,Crude oil ,biology.organism_classification ,Bacteria ,Halophile - Abstract
Based on biochemical and phylogenetic analyses, isolated from a salt sample from Lake Qarun (Egypt) a halophilic strain EG1QL3 was identified as Chromohalobacter salexigens. The abilities of EG1QL3 to produce an extracellular polysaccharide, degrade oil, and resist to heavy metals were revealed.
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- 2020
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21. Organic-nanoclay composite materials as removal agents for environmental decontamination
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N. N. Khaertdinov, Giuseppe Cavallaro, Giuseppe Lazzara, Svetlana A. Konnova, Marina Kryuchkova, Rawil Fakhrullin, Elvira Rozhina, Cavallaro G., Lazzara G., Rozhina E., Konnova S., Kryuchkova M., Khaertdinov N., and Fakhrullin R.
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Materials science ,General Chemical Engineering ,Composite number ,Remediation ,Nanoparticle ,Clay nanoparticle ,02 engineering and technology ,General Chemistry ,engineering.material ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Halloysite ,Pickering emulsion ,0104 chemical sciences ,Nanomaterials ,Surface modification ,Adsorption ,Specific surface area ,engineering ,Composite material ,0210 nano-technology - Abstract
Here we overview the recent advances in the fabrication of sustainable composite nanomaterials with decontamination capacity towards inorganic and organic pollutants. In this regards, we present the development of hybrid systems based on clay nanoparticles with different shapes (such as kaolinite nanosheets and halloysite nanotubes) and organic molecules (biopolymers, surfactants, cucurbituril) as efficient removal agents for both aliphatic and aromatic hydrocarbons. Due to their high specific surface area, clay nanoparticles have been successfully employed as fillers for composite membranes with excellent filtration capacity. The preparation of composite gel beads based on biopolymers (alginate and pectin) and halloysite nanotubes has been discussed and their adsorption capacities towards both heavy metals and organic dyes have been highlighted. We describe the successful preparation of kaolinite/graphene composites as well as tubular inorganic micelles obtained by the select functionalization of the halloysite cavity with anionic surfactants. Finally, recent research on Pickering emulsions (for oil spill remediation) and bioremediation technologies has been discussed.
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- 2019
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22. Structure of the O-specific polysaccharide from Azospirillum formosense CC-Nfb-7(T)
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Yulia P. Fedonenko, Svetlana A. Konnova, Alexander S. Shashkov, Evelina L. Zdorovenko, and Elena N. Sigida
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chemistry.chemical_classification ,Azospirillum formosense ,biology ,Lipopolysaccharide ,010405 organic chemistry ,Stereochemistry ,Hydrolysis ,Organic Chemistry ,General Medicine ,010402 general chemistry ,Polysaccharide ,biology.organism_classification ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Analytical Chemistry ,chemistry.chemical_compound ,chemistry ,Polysaccharides ,Acid hydrolysis ,Trisaccharide ,Azospirillum ,Sugar ,Heteronuclear single quantum coherence spectroscopy ,Bacteria - Abstract
The lipopolysaccharide was obtained from the cells of Azospirillum formosense CC-Nfb-7(T), a diazotrophic bacterium isolated from agricultural soil. The O-specific polysaccharide (OPS) was released by mild acid hydrolysis of the lipopolysaccharide and was studied by sugar analysis along with 1H and 13C NMR spectroscopy, including 1H,1H COSY, TOCSY, ROESY, 1H,13C HSQC, and HMBC experiments, and Smith degradation. The following structure of partially methylated OPS composed of trisaccharide repeating units was established.
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- 2020
23. 5-ALA/PpIX photodiagnosis of stress-induced gastrointestinal metastatic tumours in laboratorial animals
- Author
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Latchezar Avramov, Matvey Kanevskiy, Oxana Semyachkina-Glushkovskaya, Svetlana A. Konnova, Nikita A. Navolokin, Tsanislava Genova, Alexander Khorovodov, Ilana Agranovich, and Ekaterina Borisova
- Subjects
Gastrointestinal tract ,Pathology ,medicine.medical_specialty ,business.industry ,Stress induced ,Cancer ,medicine.disease ,Metastatic tumours ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Gastric mucosa ,Medicine ,Adenocarcinoma ,Chronic stress ,business ,Sodium nitrite - Abstract
Combined spectroscopic and biochemical measurements were used to improve diagnostic accuracy and to evaluate gastrointestinal tract (GIT) neoplasia development parameters noninvasively. Experiments were performed in mongrel male rats divided into 2 groups – control and experimental. To induce gastric cancer, the rats underwent to chronic stress (overpopulation during 9 months) and diet including the daily using of mtoluidine (25 μg/kg weight) in food and water with a solution of sodium nitrite (0.2%) for 9 months. We studied effectiveness of 5-ALA/PpIX fluorescent analysis of gastric carcinoma and biochemical stress-corresponding indices detection for early diagnosis of primary gastric tumours and their metastatic spreading in liver. Affected by precancerous and cancerous alterations mucosa reveal red fluorescence, related to the accumulation of 5- ALA/PpIX. Liver tissues investigated also presented increase of the red fluorescence, which was used as an indicator for possible pathologic process detection there. The histological examination revealed liver metastases in 67.8 % of the rats with gastric cancer. Biochemical indicators detected malignant alterations presence in GIT, and fluorescent observation addressed the exact area and borders of neoplastic lesions. 5-ALA/PpIX fluorescence detection allow to find and precisely map premalignant and malignant areas of gastric mucosa and liver metastases of stress-induced gastric heterogeneous adenocarcinoma and biochemical evaluation of stressrelated compounds increased the efficiency of such diagnosis and reveal information about the dynamics of lesions development. Diagnostic accuracy achieved using fluorescent detection reaches 93% for gastric carcinoma, and 87% for pre-cancerous mucosa alterations observed.
- Published
- 2020
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24. Structural Peculiarities and Biological Properties of the Lipopolysaccharide from Herbaspirillum seropedicae Z78
- Author
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Svetlana A. Konnova, Evelina L. Zdorovenko, Yuliya P. Fedonenko, N. S. Velichko, and Alina K. Surkina
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,biology ,Strain (chemistry) ,Lipopolysaccharide ,030106 microbiology ,Phenol extraction ,biology.organism_classification ,Herbaspirillum seropedicae ,Polysaccharide ,Applied Microbiology and Biotechnology ,Microbiology ,Lipid A ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Glycerol ,Bacteria - Abstract
Lipopolysaccharide was isolated by phenol extraction from the surface membrane of the nitrogen-fixing endophytic rhizobacterium Herbaspirillum seropedicae, strain Z78. The lipopolysaccharide’s lipid A contained 3-hydroxydecanoic, 3-hydroxydodecanoic, dodecanoic, tetradecanoic, and hexadecanoic acids. The 3-hydroxydodecanoic acid was amide-linked to the sugar backbone of the lipid A. The structure of the O-polysaccharide from H. seropedicae Z78 was established for the first time. It is characterized by heterogeneity and by the presence of glycerol, a component rarely found in gram-negative bacteria. The O polysaccharide of H. seropedicae Z78 was found to consist of two types of repeating units: one represented by glycerol-1-phosphate and the other by the glycerol-1-phosphate of the backbone, which is substituted at the 2-position by N-acetyl-D-glucosamine. The lipopolysaccharide of the H. seropedicae Z78 was weakly toxic to warm-blooded animals and moderately and dose-dependently induced interleukin synthesis by human whole blood cells and NO synthesis by mouse splenocytes. This may indicate that the H. seropedicae lipopolysaccharide is a promising antagonist of classical endotoxins.
- Published
- 2018
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25. Immunomodulatory activity of exopolysaccharide from the rhizobacterium Paenibacillus polymyxa CCM 1465
- Author
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Alla A. Fomina, Irina V. Yegorenkova, Vladimir V. Ignatov, Svetlana A. Konnova, and Kristina V. Tregubova
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Male ,0301 basic medicine ,Phagocytosis ,Acid Phosphatase ,01 natural sciences ,Biochemistry ,Microbiology ,Proinflammatory cytokine ,Mice ,03 medical and health sciences ,Immune system ,Genetics ,Animals ,Humans ,Immunologic Factors ,Molecular Biology ,Cell Proliferation ,Peroxidase ,Innate immune system ,biology ,010405 organic chemistry ,Chemistry ,Macrophages ,Polysaccharides, Bacterial ,Acid phosphatase ,Bacterial polysaccharide ,Biological activity ,General Medicine ,biology.organism_classification ,0104 chemical sciences ,030104 developmental biology ,biology.protein ,Cytokines ,Paenibacillus polymyxa ,Reactive Oxygen Species - Abstract
Bacterial polysaccharides are promising stimulants of protective functions in humans and animals. We investigated the ability of exopolysaccharide from the rhizobacterium Paenibacillus polymyxa CCM 1465 to induce nonspecific resistance factors in the macroorganism. We examined in vitro the effect of the exopolysaccharide, produced with different carbon sources, on the phagocytic activity of murine macrophages, on the generation of reactive oxygen species and of enzymes (acid phosphatase and myeloperoxidase), on the proliferation of murine splenocytes, and on the synthesis of proinflammatory cytokines [interleukin-1 (IL-1) and tumor necrosis factor α (TNF-α)] by human mononuclear cells. The exopolysaccharide promoted the phagocytosis of bacterial cells, activated metabolic processes in human and animal leukocytes, and moderately affected the production of TNF-α and IL-1β. The exopolysaccharides produced on media with glucose and sucrose differed in their effect on the immune cells, possibly owing to their different compositions, structures, and properties. The results validly indicate that the exopolysaccharide of P. polymyxa CCM 1465 promotes nonspecific immunity. Therefore, it can find application as a biologically active immunomodulatory substance.
- Published
- 2018
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26. Characterization Surface Glycopolymers from Halophilic Gram-Negative Bacteria Chromohalobacter salexigens 1QL3 and Halomonas ventosae S5(2)
- Author
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D. A. Rybal’chenko, I. M. Ibrahim, Yu. P. Fedonenko, Svetlana A. Konnova, and Elena N. Sigida
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Halomonas ventosae ,Chromohalobacter salexigens ,Gram-negative bacteria ,biology ,Chemistry ,biology.organism_classification ,Halophile ,Microbiology - Published
- 2018
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27. Exopolysaccharide-Producing Halophilic and Halotolerant Microorganisms Isolated from the Saline Lakes Qarun (Egypt) and Elton (Russia)
- Author
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I. M. Ibrahim, Elena N. Sigida, Yu. P. Fedonenko, Svetlana A. Konnova, V. I. Safronova, and К. A. Elbanna
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Chemistry ,medicine.medical_treatment ,Microorganism ,Botany ,medicine ,Halotolerance ,Saline ,Halophile - Published
- 2018
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28. MONETARY INCOMES OF THE POPULATION AS AN INDICATOR OF QUALITY OF LIFE IN THE REGION (ON THE EXAMPLE OF ASTRAKHAN REGION)
- Author
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Ekaterina Olegovna Cheremnyh, Ekaterina Vladimirovna Kargapolova, Svetlana Nikolaevna Konnova, and Irina Ivanovna Potapova
- Subjects
education.field_of_study ,Quality of life (healthcare) ,Economic policy ,Population ,Economics ,education - Abstract
The article touches upon the income of the population as an indicator of welfare and living standard of the people in the Astrakhan region. According to such indicators as real cash incomes, real accrued wages and the actual size of pensions, there has been drawn a conclusion about welfare of residents of Astrakhan. The article has identified a trend towards decreasing income growth of the population. It has been stated in the article that about one third of the population of the Astrakhan region need additional income to satisfy long-term requirements, and only five percent of the population don't restrain their spending capacity.
- Published
- 2017
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29. ALA/PpIX photodiagnosis of stress-induced gastrointestinal primary tumors and metastases in experimental animals
- Author
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Vanya Mantareva, Oxana Semyachkina-Glushkovskaya, Ilana Agranovich, Ivan Angelov, Nikita A. Navolokin, Matvey Kanevskiy, Svetlana A. Konnova, Tsanislava Genova, Alexander Khorovodov, and Ekaterina Borisova
- Subjects
Gastrointestinal tract ,Pathology ,medicine.medical_specialty ,Fluorophore ,Protoporphyrin IX ,business.industry ,Stomach ,Histology ,5-ALA/PpIX ,Fluorescence ,liver metastasis ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Nitrosamine ,In vivo ,stomach adenocarcinoma ,medicine ,photodiagnostics ,business - Abstract
Gastrointestinal cancerous lesions were induced in laboratorial animals using prolonged exposure to social (overpopulation) and chemical stress (nitrosamine diet), mimicking typical stress factors for humans in the big cities. Twenty laboratorial rats with developed stress-induced neoplasia in gastrointestinal tract were used. Three of them formed control group - without application of exogenous contrast fluorescent marker. Exogenous fluorescent spectroscopic measurements were used to evaluate gastrointestinal tract (GIT) neoplasia development noninvasively using excitation at 405 nm and emission was detected in the region of 500-850 nm using microspectrometer. We used as exogenous fluorescent marker protoporphyrin IX applying its precursor delta aminolevulinic acid in a dose of 20mg/kg, in laboratorial rats with stress-induced neoplasia. Spectroscopic analysis of primary gastric tumours and their metastases spreading in rats’ liver was carried out on animals in vivo, as excitation and emission light were delivered by fiberoptic probe 6+1 to the organs investigated during open surgery procedure. Biochemical indicators detected malignant alterations presence in GIT were also evaluated and used as complementary indices for lesions’ growth. Fluorescent observation using exogenous fluorophore addressed the exact area and borders of neoplastic lesions in stomach and liver. In some cases in inflammatory areas significant accumulation of delta-ALA had place, which lead to false-positive fluorescent signal of protoporphyrin IX in these tissues. Photodiagnostics accuracy of 93% was reached for cancerous cases and 87% for gastric pre-cancer lesions evaluation. Very good correlation between fluorescence data and histology examination of the lesions investigated was achieved as well.
- Published
- 2019
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30. Photodynamic diagnostics for stomach cancer detection in stress modeled lesions in vivo
- Author
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Nikita A. Navolokin, Ekaterina Borisova, Alexander Khorovodov, Matvey Kanevsky, Oxana Semyachkina-Glushkovskaya, Anastasia A. Shnitenkova, Svetlana A. Konnova, Veronika E. Shimanova, Tatiana S. Vashenko, Anna A. Galitskaya, Aysel Mamedova, and Ilana Agranovich
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POL ,Gastrointestinal tract ,Pathology ,medicine.medical_specialty ,stomach cancer ,Protoporphyrin IX ,business.industry ,Atrophic gastritis ,Stomach ,Cancer ,photosensitizers ,medicine.disease ,5-ALA/PpIX ,adenocarcenoma ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,photodynamic diagnostics ,medicine ,Photosensitizer ,Protoporphyrin ,business ,Stomach cancer - Abstract
Gastric cancer is the main cause of death among oncological diseases of the gastrointestinal tract, which is associated with the difficulty of early diagnosis of this disease. This study aims to develop a new method for diagnosing gastric cancer using the delta-aminolevulinic acid / protoporphyrin IX photosensitizer (5-ALA / PpIX). The experiments were performed on white rats of average weight 250 grams. The animals were divided into 2 groups: control and experimental (stress + diet, including nitrites and carcinogenic amines) ones. The results of the studies, averaged for each type of tissue, clearly show significant differences between normal, precancerous and malignant changes in the stomach tissues of rats on the background of application of photodynamic diagnostics. The fluorescence from malignant neoplasms in the organ was maximal at 635 nm, which corresponds to the maximum emission of protoporphyrin due to the high accumulation of this photosensitizer in the affected tissues. The most important result of the study was the detection of precancerous changes (atrophic gastritis, confirmed by histological methods), using photodynamic diagnostics with photosensitizer 5-ALA / PpIX. Intensity of fluorescence in case of precancerous changes occupied an intermediate value between that in normal and in malignant mucosa of the stomach.
- Published
- 2019
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31. Spatial manipulation of magnetically-responsive nanoparticle engineered human neuronal progenitor cells
- Author
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Ivan Guryanov, Ekaterina Naumenko, Rawil Fakhrullin, Maria A. Lagarkova, Svetlana A. Konnova, and Sergey L. Kiselev
- Subjects
Induced Pluripotent Stem Cells ,Biomedical Engineering ,Pharmaceutical Science ,Medicine (miscellaneous) ,Bioengineering ,02 engineering and technology ,03 medical and health sciences ,chemistry.chemical_compound ,Neural Stem Cells ,Cell Line, Tumor ,Polyamines ,Cytotoxic T cell ,Humans ,Nanotechnology ,General Materials Science ,Progenitor cell ,Induced pluripotent stem cell ,Magnetite Nanoparticles ,030304 developmental biology ,Progenitor ,0303 health sciences ,Cell Death ,Chemistry ,Cell Differentiation ,equipment and supplies ,021001 nanoscience & nanotechnology ,In vitro ,Cell biology ,nervous system ,Molecular Medicine ,Magnetic nanoparticles ,0210 nano-technology ,human activities ,Lamin ,Iron oxide nanoparticles - Abstract
Here we report a detailed investigation of the interaction of neuronal progenitor cells and neurons with polyelectrolyte-stabilized magnetic iron oxide nanoparticles. Human neuronal progenitor and neurons were differentiated in vitro from fibroblast-derived induced pluripotent stem cells. The cytotoxic effects of poly(allylamine hydrochloride) were determined on human skin fibroblasts and neuronal progenitor cells. Immunocytochemical staining of lamins A/C and B in cells treated separately with poly(allylamine hydrochloride) and magnetic nanoparticles allowed to exclude these nuclear components as targets of toxic effects. We demonstrate that magnetic nanoparticles accumulated in cytoplasm and on the surface of neuronal progenitor cells neither interacted with the nuclear envelope nor penetrated into the nuclei of neuronal cells. The possibility of guidance of magnetically functionalized neuronal progenitor cells under magnetic field was demonstrated. Magnetization of progenitor cells using poly(allylaminehydrochloride)-stabilized magnetic nanoparticles allows for successful managing their in vitro localization in a monolayer.
- Published
- 2019
32. The Influence of Growth Conditions of Bacteria Azospirillum lipoferum Sp59b on the Biological Activity of Their Glycopolymers
- Author
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Svetlana A. Konnova, Yu. P. Fedonenko, and Alina K. Surkina
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biology ,Chemistry ,Azospirillum lipoferum ,Biological activity ,biology.organism_classification ,Bacteria ,Microbiology - Published
- 2017
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33. Structural properties of capsular and O-specific polysaccharides of Azospirillum brasilense Sp245 under varying cultivation conditions
- Author
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Yu. P. Fedonenko, S. S. Yevstigneyeva, Svetlana A. Konnova, Vladimir V. Ignatov, and Elena N. Sigida
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,biology ,030106 microbiology ,Sodium malate ,Fructose ,Azospirillum brasilense ,biology.organism_classification ,Polysaccharide ,Applied Microbiology and Biotechnology ,Microbiology ,carbohydrates (lipids) ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Biochemistry ,chemistry ,Monosaccharide ,lipids (amino acids, peptides, and proteins) ,Malic acid ,Microbial inoculant ,Bacteria - Abstract
Effect of the carbon source in the culture medium and of the growth phase on the composition and structure of the capsular polysaccharides (CPSs) and lipopolysaccharides (LPSs) of the bacterium Azospirillum brasilense Sp245 was studied. Growth with fructose resulted in an increased carbohydrate content in the CPSs, while long-term cultivation resulted in an increased content of phosphorus in both CPSs and LPSs. The LPSs produced on the medium with fructose (regardless of the cultivation duration) and the LPSs of the bacteria grown with sodium malate until the stationary phase were characterized by higher levels of unsaturated fatty acids than the LPSs of the bacteria grown with sodium malate to the late exponential phase. The structures of the polysaccharides from the isolated glycopolymers were established using monosaccharide analysis, including determination of the absolute configurations and 1D and 2D NMR spectroscopy. This study is the first to report that the CPS of A. brasilense Sp245 grown with sodium malate to the end of the exponential phase is structurally identical to the O-polysaccharide from the LPS of this bacterium and that the LPS and CPS of A. brasilense Sp245 grown with fructose contain an additional homoglucan of the following structure: [→3)-α-D-Glcp-(1→] n .
- Published
- 2016
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34. Nanoshell Assembly for Magnet-Responsive Oil-Degrading Bacteria
- Author
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Yuri Lvov, Svetlana A. Konnova, and Rawil Fakhrullin
- Subjects
Anions ,Surface Properties ,Static Electricity ,Nanoparticle ,Nanotechnology ,02 engineering and technology ,Alcanivoraceae ,Microscopy, Atomic Force ,010402 general chemistry ,01 natural sciences ,Electrolytes ,Magnetics ,chemistry.chemical_compound ,Cell Wall ,Cations ,Polyamines ,Electrochemistry ,General Materials Science ,Spectroscopy ,Magnetite ,Coacervate ,biology ,Nanoshells ,Vesicle ,Cell Membrane ,Surfaces and Interfaces ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,biology.organism_classification ,Polyelectrolytes ,Ferrosoferric Oxide ,Nanoshell ,0104 chemical sciences ,Agar ,chemistry ,Chemical engineering ,Biofilms ,Hydrodynamics ,Adsorption ,Alcanivorax ,0210 nano-technology ,Iron oxide nanoparticles ,Bacteria - Abstract
The modified polyelectrolyte-magnetite nanocoating was applied to functionalize the cell walls of oil decomposing bacteria Alcanivorax borkumensis. Cationic coacervate of poly(allylamine) and 20 nm iron oxide nanoparticles allowed for a rapid single-step encapsulation process exploiting electrostatic interaction with bacteria surfaces. The bacteria were covered with rough 70-100-nm-thick shells of magnetite loosely bound to the surface through polycations. This encapsulation allowed for external manipulations of A. borkumensis with magnetic field, as demonstrated by magnetically facilitated cell displacement on the agar substrate. Magnetic coating was naturally removed after multiple cell proliferations providing next generations of the cell in the native nonmagnetic form. The discharged biosurfactant vesicles indicating the bacterial functionality (150 ± 50 nm lipid micelles) were visualized with atomic force microscopy in the bacterial biofilms.
- Published
- 2016
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35. The structure of lipopolysaccharides of bacteria of the genus Azospirillum and their participation in the activation of peroxidase activity in plants
- Author
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Yu.P. Fedonenko, E. A. Samsonova, Svetlana A. Konnova, and Elena N. Sigida
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biology ,Chemistry ,Genus Azospirillum ,Botany ,biology.protein ,biology.organism_classification ,Bacteria ,Peroxidase - Published
- 2019
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36. Structure of the O-specific polysaccharide from Azospirillum fermentarium CC-LY743
- Author
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Elena N. Sigida, Alexander S. Shashkov, Svetlana A. Konnova, Vladimir V. Ignatov, and Yuliya P. Fedonenko
- Subjects
0301 basic medicine ,Stereochemistry ,Mannose ,Polysaccharide ,01 natural sciences ,Biochemistry ,Fucose ,Analytical Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Carbohydrate Conformation ,Tetrasaccharide ,Sugar ,Nuclear Magnetic Resonance, Biomolecular ,chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Polysaccharides, Bacterial ,General Medicine ,Carbon-13 NMR ,0104 chemical sciences ,030104 developmental biology ,Acid hydrolysis ,Azospirillum ,Heteronuclear single quantum coherence spectroscopy - Abstract
O-specific polysaccharide was obtained by mild acid hydrolysis of the lipopolysaccharide of nitrogen-fixing bacterium Azospirillum fermentarium CC-LY743 T (IBPPM 578) and was studied by sugar analysis along with 1 H and 13 C NMR spectroscopy, including 1 H, 1 H COSY, TOCSY, ROESY, and 1 H, 13 C HSQC and HMBC experiments. The polysaccharide was found to be linear and to consist of alterating α- l -fucose and α- d -mannose residues in tetrasaccharide repeating units of the following structure: →2)-α-D-Man p -(1 → 3)-α-L-Fuc p -(1 → 3)-α-D-Man p -(1 → 3)-α-L-Fuc p -(1→
- Published
- 2018
37. Gold nanoparticle-assisted polymerase chain reaction: effects of surface ligands, nanoparticle shape and material
- Author
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Timofey Pylaev, Nikolai G. Khlebtsov, Vitaly A. Khanadeev, Valentina Fedorova, Svetlana A. Konnova, and Ekaterina Vanzha
- Subjects
chemistry.chemical_classification ,General Chemical Engineering ,Analytical chemistry ,Nanoparticle ,02 engineering and technology ,General Chemistry ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Colloidal gold ,Bromide ,PEG ratio ,Zeta potential ,Surface modification ,Nanorod ,0210 nano-technology ,Nuclear chemistry - Abstract
Recent reports have shown significant improvement of the polymerase chain reaction (PCR) efficiency and specificity with the addition of gold nanoparticles (AuNPs). However, the underlying mechanisms are still unclear and debatable. Here, we report effects of AuNP concentration, shape, material, and surface functionalization on PCR outcome under typical amplification conditions. All nanoparticles were tested with two PCR diagnostic models: (1) the nitrogen fixation (NifD) gene from Azospirillum brasilense Sp7 bacteria and (2) the polymorphic ompA gene encoding major outer membrane protein of Chlamydia trachomatis. The optimal concentration of 16 nm citrate-stabilized negatively charged spherical AuNPs (zeta potential −29.9 mV) was determined to be 0.4 nM, in agreement with previous data for quite different PCR systems. Functionalization with poly(vinylpyrrolidone) (PVP) and thiolated PEG (mPEG-SH) essentially did not change the zeta-potential (−30 mV and −21 mV, respectively), but completely suppressed the PCR enhancement. Positively charged AuNPs with poly(diallyldimethylammonium) (PDDA) and cetyltrimethylammonium bromide (CTAB) capping polymers exhibited no specific enhancing effect on PCR or even inhibited the reaction at 5 pM of AuNP–PDDA. Also, no specific PCR enhancement was obtained with CTAB-stabilized gold nanorods. To elucidate the role of the particle material, we performed PCR with gold and silica particles of comparable size and equal negative charges. In contrast to the great PCR enhancement with 16 nm AuNPs, 20 nm silica nanoparticles did not affect the PCR efficiency or inhibit the reaction at concentrations higher than 100 nM. These findings suggest that the nature of the PCR system components, surface stabilizing agents and the thermal conductivity of the nanoparticle material can play important roles in the nanoparticle-mediated PCR.
- Published
- 2016
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38. Structure of the polysaccharides from the lipopolysaccharide of Azospirillum brasilense Jm125A2
- Author
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Svetlana A. Konnova, Vladimir V. Ignatov, Yuliya P. Fedonenko, Alexander S. Shashkov, Yuriy A. Knirel, Elena N. Sigida, and Evelina L. Zdorovenko
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chemistry.chemical_classification ,Rhizosphere ,Lipopolysaccharide ,biology ,Chemistry ,Molecular Sequence Data ,Organic Chemistry ,Bacterial polysaccharide ,O Antigens ,Azospirillum brasilense ,General Medicine ,Carbon-13 NMR ,Polysaccharide ,biology.organism_classification ,Biochemistry ,Analytical Chemistry ,chemistry.chemical_compound ,Carbohydrate Sequence ,Sugar ,Bacteria - Abstract
Two polysaccharides were obtained by mild acid degradation of the lipopolysaccharide of associative nitrogen-fixing bacteria Azospirillum brasilense Jm125A2 isolated from the rhizosphere of a pearl millet. The following structures of the polysaccharides were established by sugar and methylation analyses, Smith degradation, and (1)H and (13)C NMR spectroscopy: [Formula: see text] Structure 1 has been reported earlier for a polysaccharide from A. brasilense S17 (Fedonenko YP, Konnova ON, Zdorovenko EL, Konnova SA, Zatonsky GV, Shaskov AS, Ignatov VV, Knirel YA. Carbohydr Res 2008;343:810-6), whereas to our knowledge structure 2 has not been hitherto found in bacterial polysaccharides.
- Published
- 2015
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39. Structure and serology of O-antigens of nitrogen-fixing rhizobacteria of the genus Azospirillum
- Author
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Elena N. Sigida, Svetlana A. Konnova, Yu. P. Fedonenko, and Vladimir V. Ignatov
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,Chemistry ,Genus Azospirillum ,General Chemistry ,Polysaccharide ,Rhizobacteria ,Microbiology ,Serology ,O-Antigens ,03 medical and health sciences ,030104 developmental biology ,Nitrogen fixation ,Diazotroph ,Microbial inoculant - Abstract
The review presents a discussion of the published data of 2002 to 2014 dealing with structural studies of O-specific polysaccharides, representatives of the Azospirillum diazotrophic rhizobacteria, summarizing the results of a series of authors´ studies. Some general structures incorporated in O-specific polysaccharides responsible for classification of bacterial cultures into serogroups on the basis of immunochemical studies were characterized. The structures of O-specific polysaccharides of seven azospirillum strains identical to those of previously studied strains are presented in this review for the first time.
- Published
- 2015
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40. Fabrication of Magnetically Responsive Agarose Microbeads Doped with Live Microbial Cells
- Author
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Rawil Fakhrullin and Svetlana A. Konnova
- Subjects
Materials science ,Fabrication ,010304 chemical physics ,Doping ,technology, industry, and agriculture ,Biomedical Engineering ,Bioengineering ,Nanotechnology ,02 engineering and technology ,equipment and supplies ,021001 nanoscience & nanotechnology ,01 natural sciences ,Cell wall ,chemistry.chemical_compound ,chemistry ,0103 physical sciences ,Magnetic nanoparticles ,Agarose ,0210 nano-technology ,human activities - Abstract
Here, we report a scalable and rapid method to fabricate magnetically responsive agarose microgels doped with microbial cells. Low-temperature melting agarose and food-grade sunflower oil were used to fabricate microbeads during emulsification and gel setting. Microscopic algae and fungi cells were doped into ∼100-μm-sized beads as single culture or mixed. Magnetic nanoparticles were deposited either on cell walls or on bead walls. We found that the cells encapsulated in magnetically responsive microbeads were viable and able for germination.
- Published
- 2016
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41. Silver nanoparticle-coated 'cyborg' microorganisms: rapid assembly of polymer-stabilised nanoparticles on microbial cells
- Author
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Gӧlnur Fakhrullina, A. R. Badrutdinov, Svetlana A. Konnova, Farida Akhatova, Rawil Fakhrullin, and Anna Danilushkina
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chemistry.chemical_classification ,Fabrication ,Materials science ,General Chemical Engineering ,Nanoparticle ,Nanotechnology ,General Chemistry ,Polymer ,Surface engineering ,Silver nanoparticle ,Nanomaterials ,Microelectrophoresis ,chemistry ,Monolayer - Abstract
Fabrication of “cyborg” cells (biological cells with surfaces functionalised using a variety of nanomaterials) has become a fascinating area in cell surface engineering. Here we report a simple procedure for fabrication of polycation-stabilised 50 nm silver nanoparticles and application of these nanoparticles for fabrication of viable “cyborg” microbial cells (yeast and bacteria). Cationic polymer-stabilised nanoparticles electrostatically adhere to microbial cells producing an even monolayer on the cell walls, as demonstrated using enhanced dark-field microscopy, atomic force microscopy and microelectrophoresis. Our procedure is exceptionally fast, being completed within 20 min after introduction of cells into nanoparticle aqueous suspensions. Polymer-stabilised silver nanoparticles are highly biocompatible, with viability rates reaching 97%. We utilised “cyborg” cells built using bacteria and silver nanoparticles to deliver nanoparticles into C. elegans microworms. We believe that the technique described here will find numerous applications in cell surface engineering.
- Published
- 2015
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42. Comparative characteristics of the information content of biochemical and electrical parameters of biotissues in the modeling of the induced development of precancerous abnormalities of the gastrointestinal tract in rats
- Author
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Ekaterina V. Pleshakova, Vladimir A. Velikov, Irina K. Mironova, Svetlana A. Konnova, Anna A. Galitskaya, Matvey Kanevskiy, and Oksana V. Semyachkina-Glushkovskaya
- Subjects
Pathology ,medicine.medical_specialty ,Gastrointestinal tract ,Stomach ,Sodium ,chemistry.chemical_element ,Physiology ,Biology ,Body weight ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,medicine ,Sodium nitrite - Abstract
We obtained impedance dispersion curves of stomach and liver tissues of rats in dynamics, while affecting with tumorigenic inductors: sodium nitrite (0.2%) and m-toluidine (25 mg per 1 kg body weight) in chronic experiment (over 10 months) in male outbred white rats aged 3 and 14 months at the beginning of the experiment. A substantial decrease in the impedance values for all test frequencies (50 Hz to 1 MHz) was shown.
- Published
- 2017
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43. Characterization of the lipopolysaccharides of serogroup II Azospirillum strains
- Author
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Gennady L. Burygin, Elena N. Sigida, Vladimir V. Ignatov, Evelina L. Zdorovenko, Svetlana A. Konnova, and Yu. P. Fedonenko
- Subjects
chemistry.chemical_classification ,Rhizosphere ,Octadecenoic Acid ,Nuclear magnetic resonance spectroscopy ,Biology ,Azospirillum brasilense ,Polysaccharide ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Lipid A ,Biochemistry ,chemistry ,Monosaccharide ,Microbial inoculant - Abstract
Lipopolysaccharides of six Azospirillum brasilense strains (SR50, SR80, SR88, SR109, SR111, SR115) and A. lipoferum SR 42 isolated from the rhizosphere of cereal plants of Saratov oblast, Russia and referred to serogroup II by serological analysis were studied. In the lipid A fatty acid composition, the lipopolysaccharides under study were similar to those of other Azospirillum strains and were characterized by a predominance of 3-hydroxytetradecanoic, 3-hydroxyhexadecanoic, and octadecenoic acids. Monosaccharide analysis of the O-specific polysaccharides (including determination of the absolute configurations, methylation analysis, and one- and two-dimensional NMR spectroscopy) revealed the presence of two types of repeating units in varying ratios. A high degree of serological similarity between the strains under study was shown to result from the presence of repeating units with identical structure of their O antigens.
- Published
- 2014
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44. The Influence of Different Growth Conditions on the Structure of the Bacterial Surface Glycopolymers of Azospirillum brasilense Sp7
- Author
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Yana Vladimirovna Khalepa, Stella Sergeevna Evstigneeva, Yulia P. Fedonenko, Vladimir V. Ignatov, Svetlana A. Konnova, and Elena N. Sigida
- Subjects
biology ,Chemistry ,Biophysics ,Azospirillum brasilense ,biology.organism_classification - Published
- 2014
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45. Physicochemical and Antigenic Properties of Surface Glycopolymers of Azospirillum brasilense Sp7 and Sp245, Grown in the Presence of Flavonoids
- Author
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Yu. P. Fedonenko, M. V. Kanevskiy, A. A. Petrunina, Svetlana A. Konnova, and Olga I. Guliy
- Subjects
Biochemistry ,biology ,Antigen ,Chemistry ,Azospirillum brasilense ,biology.organism_classification - Published
- 2014
- Full Text
- View/download PDF
46. Characterization of the Composition of the Lipopolysaccharide from Halotolerant Bacteria Azospirillum halopraeferens Au4
- Author
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Vyacheslav S. Grinev, Yu. P. Fedonenko, Svetlana A. Konnova, Elena N. Sigida, M. P. Chernyshova, and Vladimir V. Ignatov
- Subjects
Halotolerant bacteria ,chemistry.chemical_compound ,Lipopolysaccharide ,Chemistry ,Composition (visual arts) ,Azospirillum halopraeferens ,Microbiology - Published
- 2014
- Full Text
- View/download PDF
47. Effect of Azospirillum Lipopolysaccharides on the Content of Various Peroxidase Isoforms in Wheat Seedling Roots
- Author
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Anna A. Galitskaya, Yulia P. Fedonenko, Elena Petrovna Shuvalova, Lubov’ Vasilievna Kositsyna, and Svetlana A. Konnova
- Subjects
Gene isoform ,biology ,Seedling ,Chemistry ,Botany ,biology.protein ,biology.organism_classification ,Microbial inoculant ,Peroxidase - Published
- 2014
- Full Text
- View/download PDF
48. Effect of flavonoids on the composition of surface glycopolymers of Azospirillum lipoferum Sp59b
- Author
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M. V. Kanevskiy, Yu. P. Fedonenko, A. S. Boyko, Vladimir V. Ignatov, Elena N. Sigida, and Svetlana A. Konnova
- Subjects
chemistry.chemical_classification ,Lipopolysaccharide ,Flavonoid ,Biology ,Polysaccharide ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Residue (chemistry) ,chemistry.chemical_compound ,Biochemistry ,chemistry ,Azospirillum lipoferum ,heterocyclic compounds ,Quercetin ,Bacterial outer membrane ,Bacteria - Abstract
Cultivation of the type strain Azospirillum lipoferum Sp59b in the presence of flavonoid quercetin induced modification of the structure of the bacterial lipopolysaccharide. Cultivation in the presence of the flavonoid was shown to result in altered serological characteristics of the bacteria, increased heterogeneity of the outer membrane lipopolysaccharide pool, as well as in modified composition and fatty acid ratio of lipid A. The flavonoid was shown to induce the synthesis of the O-specific polysaccharide with the repeating structure represented by a tetrasaccharide consisting of a linear trisaccharide fragment of α-L-Rhap residues in the main chain and the terminal β-D-Glcp residue. The structure of this O-specific polysaccharide was identical to the previously determined structure of the capsular polysaccharide of these bacteria grown without quercetin. Modifications in the structural composition of the capsular polysaccharide induced by cultivation in the presence of quercetin were revealed.
- Published
- 2014
- Full Text
- View/download PDF
49. Structural studies of the O-specific polysaccharide(s) from the lipopolysaccharide of Azospirillum brasilense type strain Sp7
- Author
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Yuliya P. Fedonenko, Svetlana A. Konnova, Alexander S. Shashkov, Elena N. Sigida, Yuriy A. Knirel, Vladimir V. Ignatov, and Evelina L. Zdorovenko
- Subjects
chemistry.chemical_classification ,biology ,Lipopolysaccharide ,Strain (chemistry) ,Chemistry ,Molecular Sequence Data ,Organic Chemistry ,Extraction (chemistry) ,O Antigens ,Azospirillum brasilense ,General Medicine ,Carbon-13 NMR ,biology.organism_classification ,Polysaccharide ,Biochemistry ,Analytical Chemistry ,chemistry.chemical_compound ,Carbohydrate Sequence ,Sephadex ,Acid hydrolysis - Abstract
Lipopolysaccharide was obtained by phenol-water extraction from dried bacterial cells of Azospirillum brasilense type strain Sp7. Mild acid hydrolysis of the lipopolysaccharide followed by GPC on Sephadex G-50 resulted in a polysaccharide mixture, which was studied by composition and methylation analyses, Smith degradation and (1)H and (13)C NMR spectroscopy. The following polysaccharide structures were established, where italics indicate a non-stoichiometric (∼40%) 2-O-methylation of l-rhamnose.
- Published
- 2013
- Full Text
- View/download PDF
50. Immunochemical Characterization of the Capsular Polysaccharide of Azospirillum irakense KBC1
- Author
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Irina A. Popova, Elena N. Sigida, Yulia P. Fedonenko, Gennady L. Burygin, Alina K. Surkina, Svetlana A. Konnova, and Evelina L. Zdorovenko
- Subjects
Male ,Lipopolysaccharide ,Heptose ,Biology ,Polysaccharide ,complex mixtures ,Applied Microbiology and Biotechnology ,Microbiology ,Mice ,chemistry.chemical_compound ,Azospirillum irakense ,stomatognathic system ,Antigen ,Animals, Outbred Strains ,Antigenic variation ,Animals ,Bacterial Capsules ,Unit structure ,chemistry.chemical_classification ,Polysaccharides, Bacterial ,O Antigens ,General Medicine ,Antigenic Variation ,carbohydrates (lipids) ,stomatognathic diseases ,chemistry ,Biochemistry ,Azospirillum - Abstract
The repeating unit structure of Azospirillum irakense KBC1 capsular polysaccharide (CPS) was established and was found to be identical to that of the O polysaccharide of A. irakense KBC1 lipopolysaccharide (LPS). The antigenic heterogeneity of the LPS and the CPS was shown to be related to differences in the macromolecular organization of these glycopolymers. After an immune response activation, R-form CPS molecules were found to be predominant.
- Published
- 2013
- Full Text
- View/download PDF
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