29 results on '"Sutkeviciute I"'
Search Results
2. Glycomimetic ligands of DC-SIGN: detailed characterization of their binding modes and structural requirements for selectivity: P10-14
- Author
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Guzzi, C., Thépaut, M., Sutkeviciute, I., Sattin, S., Ribeiro-Viana, R., Varga, N., Chabrol, E., Fieschi, F., Bernardi, A., Angulo, J., Rojo, J., and Nieto, P. M.
- Published
- 2012
3. Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
- Author
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Zhao, L.-H., primary, Ma, S., additional, Sutkeviciute, I., additional, Shen, D.-D., additional, Zhou, X.E., additional, de Waal, P.P., additional, Li, C.-Y., additional, Kang, Y., additional, Clark, L.J., additional, Jean-Alphonse, F.G., additional, White, A.D., additional, Xiao, K., additional, Yang, D., additional, Jiang, Y., additional, Watanabe, T., additional, Gardella, T.J., additional, Melcher, K., additional, Wang, M.-W., additional, Vilardaga, J.-P., additional, Xu, H.E., additional, and Zhang, Y., additional
- Published
- 2019
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4. Crystal structure of langerin carbohydrate recognition domain with GlcNS6S
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Porkolab, V., primary, Chabrol, E., additional, Varga, N., additional, Ordanini, S., additional, Sutkeviciute, I., additional, Thepaut, M., additional, Bernardi, A., additional, and Fieschi, F., additional
- Published
- 2018
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5. Detection and quantitative analysis of two independent binding modes of a small ligand responsible for DC-SIGN clustering
- Author
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Guzzi, C., primary, Alfarano, P., additional, Sutkeviciute, I., additional, Sattin, S., additional, Ribeiro-Viana, R., additional, Fieschi, F., additional, Bernardi, A., additional, Weiser, J., additional, Rojo, J., additional, Angulo, J., additional, and Nieto, P. M., additional
- Published
- 2016
- Full Text
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6. Domain-Selective BET Ligands Yield Next-Generation Synthetic Genome Readers/Regulators with Nonidentical Cellular Functions.
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Mohammed A, Waddell MB, Sutkeviciute I, Danda A, Philips SJ, Lang W, Slavish PJ, Kietlinska SJ, Kaulage M, Sourav D, and Ansari AZ
- Abstract
SynTEF1, a prototype synthetic genome reader/regulator (SynGR), was designed to target GAA triplet repeats and restore the expression of frataxin ( FXN ) in Friedreich's ataxia patients. It achieves this complex task by recruiting BRD4, via a pan-BET ligand (JQ1), to the GAA repeats by using a sequence-selective DNA-binding polyamide. When bound to specific genomic loci in this way, JQ1 functions as a chemical prosthetic for acetyl-lysine residues that are natural targets of the two tandem bromodomains (BD1 and BD2) in bromo- and extra-terminal domain (BET) proteins. As next-generation BET ligands were disclosed, we tested a select set with improved physicochemical, pharmacological, and bromodomain-selective properties as substitutes for JQ1 in the SynGR design. Here, we report two unexpected findings: (1) SynGRs bearing pan-BET or BD2-selective ligands license transcription at the FXN locus, whereas those bearing BD1-selective ligands do not, and (2) rather than being neutral or inhibitory, an untethered BD1-selective ligand (GSK778) substantively enhances the activity of all active SynGRs. The failure of BD1-selective SynGRs to recruit BRD4/BET proteins suggests that rather than functioning as "epigenetic/chromatin mimics," active SynGRs mimic the functions of natural transcription factors in engaging BET proteins through BD2 binding. Moreover, the enhanced activity of SynGRs upon cotreatment with the BD1-selective ligand suggests that natural transcription factors compete for a limited pool of nonchromatin-bound BET proteins, and blocking BD1 directs pan-BET ligands to more effectively engage BD2. Taken together, SynGRs as chemical probes provide unique insights into the molecular recognition principles utilized by natural factors to precisely regulate gene expression, and they guide the design of more sophisticated synthetic gene regulators with greater therapeutic potential.
- Published
- 2023
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7. Molecular Mechanisms of PTH/PTHrP Class B GPCR Signaling and Pharmacological Implications.
- Author
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Vilardaga JP, Clark LJ, White AD, Sutkeviciute I, Lee JY, and Bahar I
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- Humans, Receptor, Parathyroid Hormone, Type 1 metabolism, Signal Transduction physiology, Receptors, G-Protein-Coupled, Cyclic AMP metabolism, Parathyroid Hormone-Related Protein, Parathyroid Hormone pharmacology
- Abstract
The classical paradigm of G protein-coupled receptor (GPCR) signaling via G proteins is grounded in a view that downstream responses are relatively transient and confined to the cell surface, but this notion has been revised in recent years following the identification of several receptors that engage in sustained signaling responses from subcellular compartments following internalization of the ligand-receptor complex. This phenomenon was initially discovered for the parathyroid hormone (PTH) type 1 receptor (PTH1R), a vital GPCR for maintaining normal calcium and phosphate levels in the body with the paradoxical ability to build or break down bone in response to PTH binding. The diverse biological processes regulated by this receptor are thought to depend on its capacity to mediate diverse modes of cyclic adenosine monophosphate (cAMP) signaling. These include transient signaling at the plasma membrane and sustained signaling from internalized PTH1R within early endosomes mediated by PTH. Here we discuss recent structural, cell signaling, and in vivo studies that unveil potential pharmacological outputs of the spatial versus temporal dimension of PTH1R signaling via cAMP. Notably, the combination of molecular dynamics simulations and elastic network model-based methods revealed how precise modulation of PTH signaling responses is achieved through structure-encoded allosteric coupling within the receptor and between the peptide hormone binding site and the G protein coupling interface. The implications of recent findings are now being explored for addressing key questions on how location bias in receptor signaling contributes to pharmacological functions, and how to drug a difficult target such as the PTH1R toward discovering nonpeptidic small molecule candidates for the treatment of metabolic bone and mineral diseases., (© The Author(s) 2022. Published by Oxford University Press on behalf of the Endocrine Society. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2023
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8. Biased GPCR signaling by the native parathyroid hormone-related protein 1 to 141 relative to its N-terminal fragment 1 to 36.
- Author
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Peña KA, White AD, Savransky S, Castillo IP, Jean-Alphonse FG, Gardella TJ, Sutkeviciute I, and Vilardaga JP
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- Cyclic AMP metabolism, Heparin metabolism, Humans, Ligands, Protein Conformation, Signal Transduction, beta-Arrestins metabolism, Receptor, Parathyroid Hormone, Type 1 chemistry, Receptor, Parathyroid Hormone, Type 1 metabolism
- Abstract
The parathyroid hormone (PTH)-related protein (PTHrP) is indispensable for the development of mammary glands, placental calcium ion transport, tooth eruption, bone formation and bone remodeling, and causes hypercalcemia in patients with malignancy. Although mature forms of PTHrP in the body consist of splice variants of 139, 141, and 173 amino acids, our current understanding on how endogenous PTHrP transduces signals through its cognate G-protein coupled receptor (GPCR), the PTH type 1 receptor (PTHR), is largely derived from studies done with its N-terminal fragment, PTHrP
1-36 . Here, we demonstrate using various fluorescence imaging approaches at the single cell level to measure kinetics of (i) receptor activation, (ii) receptor signaling via Gs and Gq, and (iii) receptor internalization and recycling that the native PTHrP1-141 displays biased agonist signaling properties that are not mimicked by PTHrP1-36 . Although PTHrP1-36 induces transient cAMP production, acute intracellular Ca2+ (iCa2+ ) release and β-arrestin recruitment mediated by ligand-PTHR interactions at the plasma membrane, PTHrP1-141 triggers sustained cAMP signaling from the plasma membrane and fails to stimulate iCa2+ release and recruit β-arrestin. Furthermore, we show that the molecular basis for biased signaling differences between PTHrP1-36 and properties of native PTHrP1-141 are caused by the stabilization of a singular PTHR conformation and PTHrP1-141 sensitivity to heparin, a sulfated glycosaminoglycan. Taken together, our results contribute to a better understanding of the biased signaling process of a native protein hormone acting in conjunction with a GPCR., Competing Interests: Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2022
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9. Precise druggability of the PTH type 1 receptor.
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Sutkeviciute I, Lee JY, White AD, Maria CS, Peña KA, Savransky S, Doruker P, Li H, Lei S, Kaynak B, Tu C, Clark LJ, Sanker S, Gardella TJ, Chang W, Bahar I, and Vilardaga JP
- Subjects
- Ligands, Molecular Dynamics Simulation, Signal Transduction, Receptor, Parathyroid Hormone, Type 1, Receptors, G-Protein-Coupled
- Abstract
Class B G protein-coupled receptors (GPCRs) are notoriously difficult to target by small molecules because their large orthosteric peptide-binding pocket embedded deep within the transmembrane domain limits the identification and development of nonpeptide small molecule ligands. Using the parathyroid hormone type 1 receptor (PTHR) as a prototypic class B GPCR target, and a combination of molecular dynamics simulations and elastic network model-based methods, we demonstrate that PTHR druggability can be effectively addressed. Here we found a key mechanical site that modulates the collective dynamics of the receptor and used this ensemble of PTHR conformers to identify selective small molecules with strong negative allosteric and biased properties for PTHR signaling in cell and PTH actions in vivo. This study provides a computational pipeline to detect precise druggable sites and identify allosteric modulators of PTHR signaling that could be extended to GPCRs to expedite discoveries of small molecules as novel therapeutic candidates., (© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2022
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10. Spatial bias in cAMP generation determines biological responses to PTH type 1 receptor activation.
- Author
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White AD, Peña KA, Clark LJ, Maria CS, Liu S, Jean-Alphonse FG, Lee JY, Lei S, Cheng Z, Tu CL, Fang F, Szeto N, Gardella TJ, Xiao K, Gellman SH, Bahar I, Sutkeviciute I, Chang W, and Vilardaga JP
- Subjects
- Cyclic AMP, Parathyroid Hormone, Receptors, Parathyroid Hormone
- Abstract
The parathyroid hormone (PTH) type 1 receptor (PTHR) is a class B G protein–coupled receptor (GPCR) that regulates mineral ion, vitamin D, and bone homeostasis. Activation of the PTHR by PTH induces both transient cell surface and sustained endosomal cAMP production. To address whether the spatial (location) or temporal (duration) dimension of PTHR-induced cAMP encodes distinct biological outcomes, we engineered a biased PTHR ligand (PTH
7d ) that elicits cAMP production at the plasma membrane but not at endosomes. PTH7d stabilized a unique active PTHR conformation that mediated sustained cAMP signaling at the plasma membrane due to impaired β-arrestin coupling to the receptor. Experiments in cells and mice revealed that sustained cAMP production by cell surface PTHR failed to mimic the pharmacological effects of sustained endosomal cAMP production on the abundance of the rate-limiting hydroxylase catalyzing the formation of active vitamin D, as well as increases in circulating active vitamin D and Ca2+ and in bone formation in mice. Thus, similar amounts of cAMP generated by PTHR for similar lengths of time in different cellular locations, plasma membrane and endosomes, mediate distinct physiological responses. These results unveil subcellular signaling location as a means to achieve specificity in PTHR-mediated biological outcomes and raise the prospect of rational drug design based upon spatiotemporal manipulation of GPCR signaling.- Published
- 2021
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11. Shining light on location-biased cAMP signaling.
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Vilardaga JP, Sutkeviciute I, and Peña KA
- Subjects
- Receptors, G-Protein-Coupled, Second Messenger Systems, Signal Transduction, Cyclic AMP, Proteomics
- Abstract
cAMP is the indispensable second messenger regulating cell metabolism and function in response to extracellular hormones and neurotransmitters. cAMP is produced via the activation of G protein-coupled receptors located at both the cell surface and inside the cell. Recently, Tsvetanova et al. explored cAMP generation in distinct locations and the impact on respective cell functions. Using a phospho-proteomic analysis, they provide insight into the unique role of localized cAMP production in cellular phospho-responses., Competing Interests: Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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12. Allosteric interactions in the parathyroid hormone GPCR-arrestin complex formation.
- Author
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Clark LJ, Krieger J, White AD, Bondarenko V, Lei S, Fang F, Lee JY, Doruker P, Böttke T, Jean-Alphonse F, Tang P, Gardella TJ, Xiao K, Sutkeviciute I, Coin I, Bahar I, and Vilardaga JP
- Subjects
- Arrestin chemistry, Calcium Phosphates, Cryoelectron Microscopy, Cyclic AMP, Escherichia coli, HEK293 Cells, Humans, Molecular Dynamics Simulation, Parathyroid Hormone chemistry, Receptors, G-Protein-Coupled, Arrestin metabolism, Parathyroid Hormone metabolism
- Abstract
Peptide ligands of class B G-protein-coupled receptors act via a two-step binding process, but the essential mechanisms that link their extracellular binding to intracellular receptor-arrestin interactions are not fully understood. Using NMR, crosslinking coupled to mass spectrometry, signaling experiments and computational approaches on the parathyroid hormone (PTH) type 1 receptor (PTHR), we show that initial binding of the PTH C-terminal part constrains the conformation of the flexible PTH N-terminal signaling epitope before a second binding event occurs. A 'hot-spot' PTH residue, His9, that inserts into the PTHR transmembrane domain at this second step allosterically engages receptor-arrestin coupling. A conformational change in PTHR intracellular loop 3 permits favorable interactions with β-arrestin's finger loop. These results unveil structural determinants for PTHR-arrestin complex formation and reveal that the two-step binding mechanism proceeds via cooperative fluctuations between ligand and receptor, which extend to other class B G-protein-coupled receptors.
- Published
- 2020
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13. Structural insights into emergent signaling modes of G protein-coupled receptors.
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Sutkeviciute I and Vilardaga JP
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- Animals, Cyclic AMP metabolism, Endosomes metabolism, Endosomes pathology, Humans, Membrane Lipids metabolism, Models, Molecular, Protein Conformation, Receptors, G-Protein-Coupled chemistry, beta-Arrestins metabolism, Receptors, G-Protein-Coupled metabolism, Signal Transduction
- Abstract
G protein-coupled receptors (GPCRs) represent the largest family of cell membrane proteins, with >800 GPCRs in humans alone, and recognize highly diverse ligands, ranging from photons to large protein molecules. Very important to human medicine, GPCRs are targeted by about 35% of prescription drugs. GPCRs are characterized by a seven-transmembrane α-helical structure, transmitting extracellular signals into cells to regulate major physiological processes via heterotrimeric G proteins and β-arrestins. Initially viewed as receptors whose signaling via G proteins is delimited to the plasma membrane, it is now recognized that GPCRs signal also at various intracellular locations, and the mechanisms and (patho)physiological relevance of such signaling modes are actively investigated. The propensity of GPCRs to adopt different signaling modes is largely encoded in the structural plasticity of the receptors themselves and of their signaling complexes. Here, we review emerging modes of GPCR signaling via endosomal membranes and the physiological implications of such signaling modes. We further summarize recent structural insights into mechanisms of GPCR activation and signaling. We particularly emphasize the structural mechanisms governing the continued GPCR signaling from endosomes and the structural aspects of the GPCR resensitization mechanism and discuss the recently uncovered and important roles of lipids in these processes., Competing Interests: Conflict of interest—The authors declare that they have no conflicts of interest with the content of this article., (© 2020 Sutkeviciute and Vilardaga.)
- Published
- 2020
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14. Development of C-type lectin-oriented surfaces for high avidity glycoconjugates: towards mimicking multivalent interactions on the cell surface.
- Author
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Porkolab V, Pifferi C, Sutkeviciute I, Ordanini S, Taouai M, Thépaut M, Vivès C, Benazza M, Bernardi A, Renaudet O, and Fieschi F
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- Humans, Molecular Conformation, Surface Plasmon Resonance, Surface Properties, Cell Adhesion Molecules chemistry, Glycoconjugates chemistry, Lectins, C-Type chemistry, Receptors, Cell Surface chemistry
- Abstract
Multivalent interactions between complex carbohydrates and oligomeric C-type lectins govern a wide range of immune responses. Up to date, standard SPR (surface plasmon resonance) competitive assays have largely been to evaluate binding properties from monosaccharide units (low affinity, mM) to multivalent elemental antagonists (moderate affinity, μM). Herein, we report typical case-studies of SPR competitive assays showing that they underestimate the potency of glycoclusters to inhibit the interaction between DC-SIGN and immobilized glycoconjugates. This paper describes the design and implementation of a SPR direct interaction over DC-SIGN oriented surfaces, extendable to other C-type lectin surfaces as such Langerin. This setup provides an overview of intrinsic avidity generation emanating simultaneously from multivalent glycoclusters and from DC-SIGN tetramers organized in nanoclusters at the cell membrane. To do so, covalent biospecific capture of DC-SIGN via StreptagII/StrepTactin interaction preserves tetrameric DC-SIGN, accessibility and topology of its active sites, that would have been dissociated using standard EDC-NHS procedure under acidic conditions. From the tested glycoclusters libraries, we demonstrated that the scaffold architecture, the valency and the glycomimetic-based ligand are crucial to reach nanomolar affinities for DC-SIGN. The glycocluster 3·D illustrates the tightest binding partner in this set for a DC-SIGN surface (KD = 18 nM). Moreover, the selectivity at monovalent scale of glycomimetic D can be easily analyzed at multivalent scale comparing its binding over different C-type lectin immobilized surfaces. This approach may give rise to novel insights into the multivalent binding mechanisms responsible for avidity and make a major contribution to the full characterization of the binding potency of promising specific and multivalent immodulators.
- Published
- 2020
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15. PTH/PTHrP Receptor Signaling, Allostery, and Structures.
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Sutkeviciute I, Clark LJ, White AD, Gardella TJ, and Vilardaga JP
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- Animals, Endosomes metabolism, Humans, Receptor, Parathyroid Hormone, Type 1 chemistry, Receptors, G-Protein-Coupled chemistry, Receptors, G-Protein-Coupled metabolism, Signal Transduction physiology, Parathyroid Hormone metabolism, Receptor, Parathyroid Hormone, Type 1 metabolism
- Abstract
The parathyroid hormone (PTH) type 1 receptor (PTHR) is the canonical G protein-coupled receptor (GPCR) for PTH and PTH-related protein (PTHrP) and the key regulator of calcium homeostasis and bone turnover. PTHR function is critical for human health to maintain homeostatic control of ionized serum Ca
2+ levels and has several unusual signaling features, such as endosomal cAMP signaling, that are well-studied but not structurally understood. In this review, we discuss how recently solved high resolution near-atomic structures of hormone-bound PTHR in its inactive and active signaling states and discovery of extracellular Ca2+ allosterism shed light on the structural basis for PTHR signaling and function., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2019
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16. Structure and dynamics of the active human parathyroid hormone receptor-1.
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Zhao LH, Ma S, Sutkeviciute I, Shen DD, Zhou XE, de Waal PW, Li CY, Kang Y, Clark LJ, Jean-Alphonse FG, White AD, Yang D, Dai A, Cai X, Chen J, Li C, Jiang Y, Watanabe T, Gardella TJ, Melcher K, Wang MW, Vilardaga JP, Xu HE, and Zhang Y
- Subjects
- Amino Acid Motifs, Cryoelectron Microscopy, Humans, Parathyroid Hormone pharmacology, Parathyroid Hormone physiology, Protein Binding, Protein Domains, Receptor, Parathyroid Hormone, Type 1 ultrastructure, Parathyroid Hormone chemistry, Receptor, Parathyroid Hormone, Type 1 agonists, Receptor, Parathyroid Hormone, Type 1 chemistry
- Abstract
The parathyroid hormone receptor-1 (PTH1R) is a class B G protein-coupled receptor central to calcium homeostasis and a therapeutic target for osteoporosis and hypoparathyroidism. Here we report the cryo-electron microscopy structure of human PTH1R bound to a long-acting PTH analog and the stimulatory G protein. The bound peptide adopts an extended helix with its amino terminus inserted deeply into the receptor transmembrane domain (TMD), which leads to partial unwinding of the carboxyl terminus of transmembrane helix 6 and induces a sharp kink at the middle of this helix to allow the receptor to couple with G protein. In contrast to a single TMD structure state, the extracellular domain adopts multiple conformations. These results provide insights into the structural basis and dynamics of PTH binding and receptor activation., (Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2019
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17. Ca 2+ allostery in PTH-receptor signaling.
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White AD, Fang F, Jean-Alphonse FG, Clark LJ, An HJ, Liu H, Zhao Y, Reynolds SL, Lee S, Xiao K, Sutkeviciute I, and Vilardaga JP
- Subjects
- Allosteric Regulation genetics, Animals, COS Cells, Calcium Signaling genetics, Chlorocebus aethiops, Cyclic AMP metabolism, Humans, Hypocalcemia metabolism, Hypocalcemia pathology, Kinetics, Ligands, Parathyroid Hormone metabolism, Parathyroid Hormone-Related Protein genetics, Point Mutation genetics, Protein Binding genetics, Receptor, Parathyroid Hormone, Type 1 metabolism, Cyclic AMP genetics, Hypocalcemia genetics, Parathyroid Hormone genetics, Receptor, Parathyroid Hormone, Type 1 genetics
- Abstract
The parathyroid hormone (PTH) and its related peptide (PTHrP) activate PTH receptor (PTHR) signaling, but only the PTH sustains G
S -mediated adenosine 3',5'-cyclic monophosphate (cAMP) production after PTHR internalization into early endosomes. The mechanism of this unexpected behavior for a G-protein-coupled receptor is not fully understood. Here, we show that extracellular Ca2+ acts as a positive allosteric modulator of PTHR signaling that regulates sustained cAMP production. Equilibrium and kinetic studies of ligand-binding and receptor activation reveal that Ca2+ prolongs the residence time of ligands on the receptor, thus, increasing both the duration of the receptor activation and the cAMP signaling. We further find that Ca2+ allostery in the PTHR is strongly affected by the point mutation recently identified in the PTH (PTHR25C ) as a new cause of hypocalcemia in humans. Using high-resolution and mass accuracy mass spectrometry approaches, we identified acidic clusters in the receptor's first extracellular loop as key determinants for Ca2+ allosterism and endosomal cAMP signaling. These findings coupled to defective Ca2+ allostery and cAMP signaling in the PTHR by hypocalcemia-causing PTHR25C suggest that Ca2+ allostery in PTHR signaling may be involved in primary signaling processes regulating calcium homeostasis., Competing Interests: The authors declare no conflict of interest.- Published
- 2019
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18. Polyvalent C-glycomimetics based on l-fucose or d-mannose as potent DC-SIGN antagonists.
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Bertolotti B, Sutkeviciute I, Ambrosini M, Ribeiro-Viana R, Rojo J, Fieschi F, Dvořáková H, Kašáková M, Parkan K, Hlaváčková M, Nováková K, and Moravcová J
- Subjects
- Inhibitory Concentration 50, Biomimetic Materials chemistry, Biomimetic Materials pharmacology, Cell Adhesion Molecules antagonists & inhibitors, Fucose chemistry, Lectins, C-Type antagonists & inhibitors, Mannose chemistry, Receptors, Cell Surface antagonists & inhibitors
- Abstract
The C-type lectin DC-SIGN expressed on immature dendritic cells is a promising target for antiviral drug development. Previously, we have demonstrated that mono- and divalent C-glycosides based on d-manno and l-fuco configurations are promising DC-SIGN ligands. Here, we described the convergent synthesis of C-glycoside dendrimers decorated with 4, 6, 9, and 12 α-l-fucopyranosyl units and with 9 and 12 α-d-mannopyranosyl units. Their affinity against DC-SIGN was assessed by surface plasmon resonance (SPR) assays. For comparison, parent O-glycosidic dendrimers were synthesized and tested, as well. A clear increase of both affinity and multivalency effect was observed for C-glycomimetics of both types (mannose and fucose). However, when dodecavalent C-glycosidic dendrimers were compared, there was no difference in affinity regarding the sugar unit (l-fuco, IC
50 17 μM; d-manno, IC50 12 μM). For the rest of glycodendrimers with l-fucose or d-mannose attached by the O- or C-glycosidic linkage, C-glycosidic dendrimers were significantly more active. These results show that in addition to the expected physiological stability, the biological activity of C-glycoside mimetics is higher in comparison to the corresponding O-glycosides and therefore these glycomimetic multivalent systems represent potentially promising candidates for targeting DC-SIGN.- Published
- 2017
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19. Nonhydrolyzable C-disaccharides, a new class of DC-SIGN ligands.
- Author
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Bertolotti B, Oroszová B, Sutkeviciute I, Kniežo L, Fieschi F, Parkan K, Lovyová Z, Kašáková M, and Moravcová J
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- Biomimetics, Cell Adhesion Molecules chemistry, Fucose chemistry, Glycosides chemistry, Humans, Lectins, C-Type chemistry, Mannose chemistry, Molecular Structure, Receptors, Cell Surface chemistry, Cell Adhesion Molecules metabolism, Glycosides chemical synthesis, Lectins, C-Type metabolism, Receptors, Cell Surface metabolism
- Abstract
The discovery of effective ligands for DC-SIGN receptor is one of the most challenging concepts of antiviral drug design due to the importance of this C-type lectin in infection processes. DC-SIGN recognizes mannosylated and fucosylated oligosaccharides but glycosidic linkages are accessible to both chemical and enzymatic degradations. To avoid this problem, the synthesis of stable glycoside mimetics has attracted increasing attention. In this work we establish for the first time mono- and divalent C-glycosides based on d-manno and l-fuco configurations as prospective DC-SIGN ligands. In particular, the l-fucose glycomimetics were more active than the respective d-mannose ones. The highest affinity was assessed for simple 1,4-bis(α-l-fucopyranosyl)butane (SPR: IC
50 0.43 mM) that displayed about twice higher activity than natural ligand Lex . Our results make C-glycosides attractive candidates for multivalent presentations., (Copyright © 2016 Elsevier Ltd. All rights reserved.)- Published
- 2016
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20. Transmission electron microscopy for the evaluation and optimization of crystal growth.
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Stevenson HP, Lin G, Barnes CO, Sutkeviciute I, Krzysiak T, Weiss SC, Reynolds S, Wu Y, Nagarajan V, Makhov AM, Lawrence R, Lamm E, Clark L, Gardella TJ, Hogue BG, Ogata CM, Ahn J, Gronenborn AM, Conway JF, Vilardaga JP, Cohen AE, and Calero G
- Subjects
- Electrons, Lasers, Nanoparticles chemistry, Nanoparticles ultrastructure, Proteins ultrastructure, Crystallization methods, Microscopy, Electron, Transmission methods, Proteins chemistry
- Abstract
The crystallization of protein samples remains the most significant challenge in structure determination by X-ray crystallography. Here, the effectiveness of transmission electron microscopy (TEM) analysis to aid in the crystallization of biological macromolecules is demonstrated. It was found that the presence of well ordered lattices with higher order Bragg spots, revealed by Fourier analysis of TEM images, is a good predictor of diffraction-quality crystals. Moreover, the use of TEM allowed (i) comparison of lattice quality among crystals from different conditions in crystallization screens; (ii) the detection of crystal pathologies that could contribute to poor X-ray diffraction, including crystal lattice defects, anisotropic diffraction and crystal contamination by heavy protein aggregates and nanocrystal nuclei; (iii) the qualitative estimation of crystal solvent content to explore the effect of lattice dehydration on diffraction and (iv) the selection of high-quality crystal fragments for microseeding experiments to generate reproducibly larger sized crystals. Applications to X-ray free-electron laser (XFEL) and micro-electron diffraction (microED) experiments are also discussed.
- Published
- 2016
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21. Unique DC-SIGN clustering activity of a small glycomimetic: A lesson for ligand design.
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Sutkeviciute I, Thépaut M, Sattin S, Berzi A, McGeagh J, Grudinin S, Weiser J, Le Roy A, Reina JJ, Rojo J, Clerici M, Bernardi A, Ebel C, and Fieschi F
- Subjects
- Binding Sites, Crystallography, X-Ray, HIV Infections virology, HIV-1 pathogenicity, Humans, Mannosides chemistry, Molecular Structure, Protein Structure, Tertiary, Thermodynamics, Ultracentrifugation, Biomimetics, Cell Adhesion Molecules antagonists & inhibitors, Cell Adhesion Molecules metabolism, Drug Design, HIV Infections drug therapy, HIV-1 drug effects, Lectins, C-Type antagonists & inhibitors, Lectins, C-Type metabolism, Mannosides pharmacology, Receptors, Cell Surface antagonists & inhibitors, Receptors, Cell Surface metabolism
- Abstract
DC-SIGN is a dendritic cell-specific C-type lectin receptor that recognizes highly glycosylated ligands expressed on the surface of various pathogens. This receptor plays an important role in the early stages of many viral infections, including HIV, which makes it an interesting therapeutic target. Glycomimetic compounds are good drug candidates for DC-SIGN inhibition due to their high solubility, resistance to glycosidases, and nontoxicity. We studied the structural properties of the interaction of the tetrameric DC-SIGN extracellular domain (ECD), with two glycomimetic antagonists, a pseudomannobioside (1) and a linear pseudomannotrioside (2). Though the inhibitory potency of 2, as measured by SPR competition experiments, was 1 order of magnitude higher than that of 1, crystal structures of the complexes within the DC-SIGN carbohydrate recognition domain showed the same binding mode for both compounds. Moreover, when conjugated to multivalent scaffolds, the inhibitory potencies of these compounds became uniform. Combining isothermal titration microcalorimetry, analytical ultracentrifugation, and dynamic light scattering techniques to study DC-SIGN ECD interaction with these glycomimetics revealed that 2 is able, without any multivalent presentation, to cluster DC-SIGN tetramers leading to an artificially overestimated inhibitory potency. The use of multivalent scaffolds presenting 1 or 2 in HIV trans-infection inhibition assay confirms the loss of potency of 2 upon conjugation and the equal efficacy of chemically simpler compound 1. This study documents a unique case where, among two active compounds chemically derived, the compound with the lower apparent activity is the optimal lead for further drug development.
- Published
- 2014
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22. A multivalent inhibitor of the DC-SIGN dependent uptake of HIV-1 and Dengue virus.
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Varga N, Sutkeviciute I, Ribeiro-Viana R, Berzi A, Ramdasi R, Daghetti A, Vettoretti G, Amara A, Clerici M, Rojo J, Fieschi F, and Bernardi A
- Subjects
- Cell Adhesion Molecules, Cell Line, Dendrimers chemistry, Dendrimers pharmacology, Glycosides chemistry, Glycosides pharmacology, Humans, Lectins, C-Type, Receptors, Cell Surface, Surface Plasmon Resonance, Antiviral Agents chemistry, Antiviral Agents pharmacology, Dengue Virus drug effects, Dengue Virus pathogenicity, HIV-1 drug effects, HIV-1 pathogenicity
- Abstract
DC-SIGN is a C-type lectin receptor on antigen presenting cells (dendritic cells) which has an important role in some viral infection, notably by HIV and Dengue virus (DV). Multivalent presentation of carbohydrates on dendrimeric scaffolds has been shown to inhibit DC-SIGN binding to HIV envelope glycoprotein gp120, thus blocking viral entry. This approach has interesting potential applications for infection prophylaxis. In an effort to develop high affinity inhibitors of DC-SIGN mediated viral entry, we have synthesized a group of glycodendrimers of different valency that bear different carbohydrates or glycomimetic DC-SIGN ligands and have studied their DC-SIGN binding activity and antiviral properties both in an HIV and a Dengue infection model. Surface Plasmon Resonance (SPR) competition studies have demonstrated that the materials obtained bind efficiently to DC-SIGN with IC50s in the μm range, which depend on the nature of the ligand and on the valency of the scaffold. In particular, a hexavalent presentation of the DC-SIGN selective antagonist 4 displayed high potency, as well as improved accessibility and chemical stability relative to previously reported dendrimers. At low μm concentration the material was shown to block both DC-SIGN mediated uptake of DV by Raji cells and HIV trans-infection of T cells., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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23. Synthesis of a selective inhibitor of a fucose binding bacterial lectin from Burkholderia ambifaria.
- Author
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Richichi B, Imberty A, Gillon E, Bosco R, Sutkeviciute I, Fieschi F, and Nativi C
- Subjects
- Animals, Dose-Response Relationship, Drug, Erythrocytes drug effects, Hemagglutination Inhibition Tests, Humans, Lectins chemistry, Lectins pharmacology, Ligands, Models, Molecular, Molecular Structure, Rabbits, Stereoisomerism, Structure-Activity Relationship, Thermodynamics, Burkholderia chemistry, Fucose metabolism, Lectins antagonists & inhibitors, Lectins metabolism
- Abstract
Burkholderia ambifaria is a bacterium member of the Burkholderia cepacia complex (BCC), a closely related group of Gram-negative bacteria responsible for "cepacia syndrome" in immunocompromised patients. B. ambifaria produces BambL, a fucose-binding lectin that displays fine specificity to human fucosylated epitopes. Here, we report the first example of a synthetic ligand able to selectively bind, in the micromolar range, the pathogen-lectin BambL. The synthetic routes for the preparation of the α conformationally constrained fucoside are described, focusing on a totally diastereoselective inverse electron demand [4 + 2] Diels-Alder reaction. Isothermal titration calorimetry (ITC) demonstrated that this compound binds to the pathogen-associated lectin BambL with an affinity comparable to that of natural fucose-containing oligosaccharides. No binding was observed by LecB, a fucose-binding lectin from Pseudomonas aeruginosa, and the differences in affinity between the two lectins could be rationalized by modeling. Furthermore, SPR analyses showed that this fucomimetic does not bind to the human fucose-binding lectin DC-SIGN, thus supporting the selective binding profile towards B. ambifaria lectin.
- Published
- 2013
- Full Text
- View/download PDF
24. Selective targeting of dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin (DC-SIGN) with mannose-based glycomimetics: synthesis and interaction studies of bis(benzylamide) derivatives of a pseudomannobioside.
- Author
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Varga N, Sutkeviciute I, Guzzi C, McGeagh J, Petit-Haertlein I, Gugliotta S, Weiser J, Angulo J, Fieschi F, and Bernardi A
- Subjects
- Antigens, CD chemistry, Antigens, CD metabolism, Binding Sites immunology, Cell Adhesion Molecules chemistry, Combinatorial Chemistry Techniques, Dendritic Cells cytology, Dendritic Cells immunology, Glycopeptides chemistry, Glycopeptides metabolism, HIV Infections immunology, HIV Infections metabolism, Lectins, C-Type chemistry, Lectins, C-Type immunology, Ligands, Mannose immunology, Mannose metabolism, Mannose-Binding Lectins chemistry, Mannose-Binding Lectins metabolism, Models, Chemical, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Receptors, Cell Surface chemistry, Cell Adhesion Molecules metabolism, Dendritic Cells metabolism, Glycopeptides chemical synthesis, Lectins, C-Type metabolism, Mannose chemistry, Receptors, Cell Surface metabolism
- Abstract
Dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin (DC-SIGN) and Langerin are C-type lectins of dendritic cells (DCs) that share a specificity for mannose and are involved in pathogen recognition. HIV is known to use DC-SIGN on DCs to facilitate transinfection of T-cells. Langerin, on the contrary, contributes to virus elimination; therefore, the inhibition of this latter receptor is undesired. Glycomimetic molecules targeting DC-SIGN have been reported as promising agents for the inhibition of viral infections and for the modulation of immune responses mediated by DC-SIGN. We show here for the first time that glycomimetics based on a mannose anchor can be tuned to selectively inhibit DC-SIGN over Langerin. Based on structural and binding studies of a mannobioside mimic previously described by us (2), a focused library of derivatives was designed. The optimized synthesis gave fast and efficient access to a group of bis(amides), decorated with an azide-terminated tether allowing further conjugation. SPR inhibition tests showed improvements over the parent pseudomannobioside by a factor of 3-4. A dimeric, macrocyclic structure (11) was also serendipitously obtained, which afforded a 30-fold gain over the starting compound (2). The same ligands were tested against Langerin and found to exhibit high selectivity towards DC-SIGN. Structural studies using saturation transfer difference NMR spectroscopy (STD-NMR) were performed to analyze the binding mode of one representative library member with DC-SIGN. Despite the overlap of some signals, it was established that the new ligand interacts with the protein in the same fashion as the parent pseudodisaccharide. The two aromatic amide moieties showed relatively high saturation in the STD spectrum, which suggests that the improved potency of the bis(amides) over the parent dimethyl ester can be attributed to lipophilic interactions between the aromatic groups of the ligand and the binding site of DC-SIGN., (Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2013
- Full Text
- View/download PDF
25. Structure of a glycomimetic ligand in the carbohydrate recognition domain of C-type lectin DC-SIGN. Structural requirements for selectivity and ligand design.
- Author
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Thépaut M, Guzzi C, Sutkeviciute I, Sattin S, Ribeiro-Viana R, Varga N, Chabrol E, Rojo J, Bernardi A, Angulo J, Nieto PM, and Fieschi F
- Subjects
- Binding Sites, Carbohydrate Sequence, Crystallography, X-Ray, Ligands, Models, Molecular, Molecular Sequence Data, Molecular Structure, Protein Structure, Tertiary, Biomimetics, Cell Adhesion Molecules chemistry, Cyclohexanecarboxylic Acids chemistry, Drug Design, Lectins, C-Type chemistry, Mannosides chemistry, Receptors, Cell Surface chemistry
- Abstract
In genital mucosa, different fates are described for HIV according to the subtype of dendritic cells (DCs) involved in its recognition. This notably depends on the C-type lectin receptor, langerin or DC-SIGN, involved in gp120 interaction. Langerin blocks HIV transmission by its internalization in specific organelles of Langerhans cells. On the contrary, DC-SIGN enhances HIV trans-infection of T lymphocytes. Thus, approaches aiming to inhibit DC-SIGN, without blocking langerin, represent attractive anti-HIV strategies. We previously demonstrated that dendrons bearing multiple copies of glycomimetic compounds were able to block DC-SIGN-dependent HIV infection in cervical explant models. Optimization of such ligand requires detailed characterization of its binding mode. In the present work, we determined the first high-resolution structure of a glycomimetic/DC-SIGN complex by X-ray crystallography. This glycomimetic, pseudo-1,2-mannobioside, shares shape and conformational properties with Manα1-2Man, its natural counterpart. However, it uses the binding epitope previously described for Lewis X, a ligand specific for DC-SIGN among the C-type lectin family. Thus, selectivity gain for DC-SIGN versus langerin is observed with pseudo-1,2-mannobioside as shown by surface plasmon resonance analysis. In parallel, ligand binding was also analyzed by TR-NOESY and STD NMR experiments, combined with the CORCEMA-ST protocol. These studies demonstrate that the complex, defined by X-ray crystallography, represents the unique binding mode of this ligand as opposed to the several binding orientations described for the natural ligand. This exclusive binding mode and its selective interaction properties position this glycomimetic as a good lead compound for rational improvement based on a structurally driven approach.
- Published
- 2013
- Full Text
- View/download PDF
26. A glycomimetic compound inhibits DC-SIGN-mediated HIV infection in cellular and cervical explant models.
- Author
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Berzi A, Reina JJ, Ottria R, Sutkeviciute I, Antonazzo P, Sanchez-Navarro M, Chabrol E, Biasin M, Trabattoni D, Cetin I, Rojo J, Fieschi F, Bernardi A, and Clerici M
- Subjects
- Adult, Antigens, CD metabolism, Cell Transformation, Viral, Cells, Cultured, Cervix Uteri immunology, Chemokines, CC biosynthesis, Chemokines, CC drug effects, Dendritic Cells cytology, Female, Glycosylation, HIV Infections drug therapy, HIV Infections genetics, Humans, Lectins, C-Type metabolism, Mannose-Binding Lectins metabolism, Receptors, HIV genetics, Anti-Infective Agents, Local pharmacology, CD4-Positive T-Lymphocytes immunology, Cell Adhesion Molecules drug effects, Cervix Uteri virology, Dendrimers pharmacology, Dendritic Cells immunology, HIV Infections immunology, HIV-1 drug effects, Lectins, C-Type drug effects, Receptors, Cell Surface drug effects, Receptors, HIV immunology
- Abstract
Objective: Dendritic cell-specific intercellular adhesion molecule (ICAM)-3 grabbing nonintegrin (DC-SIGN) participates in the initial stages of sexually transmitted HIV-1 infection by recognizing highly mannosylated structures presented in multiple copies on HIV-1 gp120 and promoting virus dissemination. Inhibition of HIV interaction with DC-SIGN thus represents a potential therapeutic approach for viral entry inhibition at the mucosal level., Design: Herein we evaluate the efficacy in inhibiting HIV-1 infection and the potential toxicity of a multimeric glycomimetic DC-SIGN ligand (Dendron 12)., Methods: The ability of Dendron 12 to block HIV-1 infection was assessed in cellular and human cervical explant models. Selectivity of Dendron 12 towards DC-SIGN and langerin was evaluated by surface plasmon resonance studies. β chemokine production following stimulation with Dendron 12 was also analyzed. Toxicity of the compound was evaluated in cellular and tissue models., Results: Dendron 12 averted HIV-1 trans infection of CD4(+) T lymphocytes in presence of elevated viral loads and prevented HIV-1 infection of human cervical tissues, under conditions mimicking compromised epithelial integrity, by multiple clades of R5 and X4 tropic viruses. Treatment with Dendron 12 did not interfere with the activity of langerin and also significantly elicited the production of the β chemokines MIP-1α, MIP-1β and RANTES., Conclusion: Dendron 12 thus inhibits HIV-1 infection by competition with binding of HIV to DC-SIGN and stimulation of β-chemokine production. Dendron 12 represents a promising lead compound for the development of anti-HIV topical microbicides.
- Published
- 2012
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27. Second generation of fucose-based DC-SIGN ligands: affinity improvement and specificity versus Langerin.
- Author
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Andreini M, Doknic D, Sutkeviciute I, Reina JJ, Duan J, Chabrol E, Thepaut M, Moroni E, Doro F, Belvisi L, Weiser J, Rojo J, Fieschi F, and Bernardi A
- Subjects
- Anti-HIV Agents chemistry, Anti-HIV Agents pharmacology, Antigens, CD metabolism, HIV Infections drug therapy, Humans, Mannose-Binding Lectins metabolism, Models, Molecular, Protein Binding, Cell Adhesion Molecules antagonists & inhibitors, Cell Adhesion Molecules metabolism, Fucose chemistry, Fucose pharmacology, Lectins, C-Type antagonists & inhibitors, Lectins, C-Type metabolism, Receptors, Cell Surface antagonists & inhibitors, Receptors, Cell Surface metabolism
- Abstract
DC-SIGN and Langerin are two C-type lectins involved in the initial steps of HIV infections: the former acts as a viral attachment factor and facilitates viral invasion of the immune system, the latter has a protective effect. Potential antiviral compounds targeted against DC-SIGN were synthesized using a common fucosylamide anchor. Their DC-SIGN affinity was tested by SPR and found to be similar to that of the natural ligand Lewis-X (Le(X)). The compounds were also found to be selective for DC-SIGN and to interact only weakly with Langerin. These molecules are potentially useful therapeutic tools against sexually transmitted HIV infection.
- Published
- 2011
- Full Text
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28. The influence of different glycosylation patterns on factor VII biological activity.
- Author
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Sutkeviciute I, Mistiniene E, Sereikaite J, and Bumelis VA
- Subjects
- Animals, CHO Cells, Cell Line, Chromatography, High Pressure Liquid, Cricetinae, Cricetulus, Factor VII genetics, Glycosylation, Humans, Kinetics, Protein Binding, Recombinant Proteins genetics, Surface Plasmon Resonance, Thromboplastin metabolism, Factor VII metabolism, Recombinant Proteins metabolism
- Abstract
In this study the bioactivity of three differently glycosylated blood coagulation factor VII (FVII) variants (human plasma FVII, recombinant human FVII produced in CHO and BHK cell cultures) were analyzed and compared. Surface plasmon resonance studies of FVII interaction with soluble and full length TF together with FVII autoactivation assays revealed that BHK-derived FVII has the highest bioactivity, while human plasma and CHO-derived FVII showed very similar bioactivity. The affinity of FVII variants to TF correlates with FVII autoactivation rates--the higher the affinity, the faster the autoactivation rate.
- Published
- 2009
- Full Text
- View/download PDF
29. Analysis of Cibacron blue F3G-A interaction with therapeutic proteins by MALDI-TOF mass spectrometry.
- Author
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Sutkeviciute I, Sereikaite J, and Bumelis VA
- Subjects
- Drug Interactions, Humans, Interferon alpha-2, Ligands, Recombinant Proteins, Coloring Agents chemistry, Human Growth Hormone chemistry, Interferon-alpha chemistry, Peptides chemistry, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Triazines chemistry
- Abstract
The formation of the complexes between Cibacron blue F3G-A and two therapeutic proteins, recombinant human interferon-alpha2b and recombinant human growth hormone, was investigated. The method of time-resolved limited proteolysis coupled with MALDI-TOF mass spectrometry was used. The analysis of peptide maps revealed that A(17)HR(19) and L(20)HQLAFDTYQEFEEAYIPK(38) of hGH, and R(14)TLMLLAQMR(23) and D(33)RHDFGFPQEEFGNQFQK(50) of hIFN-alpha2b, exhibit affinity to Cibacron blue F3G-A.
- Published
- 2008
- Full Text
- View/download PDF
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