36 results on '"Surme S"'
Search Results
2. Comparison of standard prophylactic and preemptive therapeutic low molecular weight heparin treatments in hospitalized patients with COVID-19
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Copur, B., primary, Surme, S., additional, Sayili, U., additional, Tuncer, G., additional, Zerdali, E., additional, Yazla, M., additional, Nakir, I. Y., additional, Buyukyazgan, A., additional, Kurt-Cinar, A. R., additional, Balli, H., additional, Kurekci, Y., additional, Pehlivanoglu, F., additional, and Sengoz, G., additional
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- 2021
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3. Mechanical properties of polymer-matrix cellulose-based composite materials
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Duşunceli, N., primary and Surme, S., additional
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- 2020
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4. Association between biofilm and multi/extensive drug resistance in diabetic foot infection
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Vatan A, Saltoglu N, Yemisen M, Balkan II, Surme S, Demiray T, Mete B, Tabak F, Study Group, and Cerrahpasa Diabetic Foot.
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,medicine.medical_treatment ,030106 microbiology ,Drug resistance ,03 medical and health sciences ,Antibiotic resistance ,Internal medicine ,Diabetes mellitus ,Drug Resistance, Multiple, Bacterial ,medicine ,Humans ,Prospective Studies ,Prospective cohort study ,Aged ,Univariate analysis ,business.industry ,Biofilm ,General Medicine ,Middle Aged ,medicine.disease ,Diabetic foot ,Diabetic Foot ,Anti-Bacterial Agents ,Amputation ,Biofilms ,Female ,business - Abstract
PURPOSE We aimed to determine significant risk factors for biofilm production and to investigate the association between antimicrobial resistance profile and biofilm formation in the bacterial isolates obtained from patients with diabetic foot infection (DFI). METHODS Demographic, clinical, laboratory and outcome data of 165 patients, prospectively recorded and followed between January 2008 and December 2015 by a multidisciplinary committee, were analysed. Standard microbiological methods were adopted. Risk factors associated with biofilm were determined by univariate and multivariate analyses. RESULTS The overall rate of biofilm production among 339 wound isolates was 34%. The biofilm production rate was significantly higher in Gram-negative micro-organisms (39%) in comparison with Gram positives (21%) (P = .01). A. baumannii presented the highest biofilm production (62%), followed by P. aeruginosa (52%) and Klebsiella spp. (40%). On univariate analysis, significant factors associated with biofilm were antibiotic use within last 3 months (OR:2.94, CI: 1.5-5.75, P = .002), recurrent DFI within last 6 months (OR:2.35, CI: 1.23-4.53, P = .01), hospitalisation within last 3 months due to ipsilateral recurrent DFI (OR:2.44, CI: 1.06-5.58, P = .03), presence of amputation history (OR: 2.20, CI: 1.14-4.24, P = .01), multidrug-resistant (MDR) micro-organism (OR: 7.76, CI: 4.53-13.35, P
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- 2018
5. Spotlight on nurses' smoking prevalence and addiction in Istanbul, Türkiye, the leading country in the implementation of WHO MPOWER policies.
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Bayramlar OF, Uysal GS, Kocak EN, Surme S, and Karabey S
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Objective: Türkiye is the leading country that has been applying the MPOWER criteria of the World Health Organization for years. However, the prevalence of smoking among nurses appears to be high, according to the literature. Therefore, we aimed to determine the prevalence, addiction levels, and dynamics of tobacco smoking among nurses in Türkiye., Method: In this descriptive cross-sectional study, a questionnaire (prepared in cooperation with the "World Health Organization") and the Fagerström Test for Nicotine Dependence were administered to 529 nurses working at a tertiary-care university hospital in 2020. Logistic regression was performed to determine factors predicting smoking., Results: The prevalence of smoking among nurses was 32.7% (n = 173). The mean Fagerström test score indicated a "low dependence" level (score: 3 ± 2.6). Both results were higher for males. A relationship was found between trying smoking cigarette and hookah. Of the "current smokers" group, 102 (60.4%) stated that they wanted to quit smoking. Only 21 (27.6%) of the nurses who have tried to quit smoking thus far have received professional help., Conclusion: The prevalence of smoking among nurses working at a tertiary-care university hospital was relatively low compared to that among nurses in Türkiye. While females are normally expected to smoke less, the high prevalence of smoking among nurses (most of them female) raises the question of the professional basis of this situation. However, the low rate of receiving professional help reveals the lack of promotion and accessibility of smoking cessation outpatient clinics in the faculty environment. Finally, the perception that hookah is an alternative tobacco product leads to cigarette smoking. The good news was that nurses had a low dependency rate., (© 2024. The Author(s).)
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- 2024
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6. The role of the circadian timing system on drug metabolism and detoxification: an update.
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Okyar A, Ozturk Civelek D, Akyel YK, Surme S, Pala Kara Z, and Kavakli IH
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- Humans, Animals, Pharmaceutical Preparations metabolism, Pharmaceutical Preparations administration & dosage, Circadian Clocks physiology, Blood-Brain Barrier metabolism, Female, Cytochrome P-450 Enzyme System metabolism, Liver metabolism, Drug Chronotherapy, Male, Sex Factors, Circadian Rhythm physiology, Inactivation, Metabolic
- Abstract
Introduction: The 24-hour variations in drug absorption, distribution, metabolism, and elimination, collectively known as pharmacokinetics, are fundamentally influenced by rhythmic physiological processes regulated by the molecular clock. Recent advances have elucidated the intricacies of the circadian timing system and the molecular interplay between biological clocks, enzymes and transporters in preclinical level., Area Covered: Circadian rhythm of the drug metabolizing enzymes and carrier efflux functions possess a major role for drug metabolism and detoxification. The efflux and metabolism function of intestines and liver seems important. The investigations revealed that the ABC and SLC transporter families, along with cytochrome p -450 systems in the intestine, liver, and kidney, play a dominant role in the circadian detoxification of drugs. Additionally, the circadian control of efflux by the blood-brain barrier is also discussed., Expert Opinion: The influence of the circadian timing system on drug pharmacokinetics significantly impacts the efficacy, adverse effects, and toxicity profiles of various drugs. Moreover, the emergence of sex-related circadian changes in the metabolism and detoxification processes has underscored the importance of considering gender-specific differences in drug tolerability and pharmacology. A better understanding of coupling between central clock and circadian metabolism/transport contributes to the development of more rational drug utilization and the implementation of chronotherapy applications.
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- 2024
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7. Urinary tract infections in older adults: associated factors for extended-spectrum beta-lactamase production.
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Alkan S, Balkan II, Surme S, Bayramlar OF, Kaya SY, Karaali R, Mete B, Aygun G, Tabak F, and Saltoglu N
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Objective: Urinary tract infections (UTIs) due to extended-spectrum beta-lactamase (ESBL) producing Escherichia coli and Klebsiella pneumoniae are among the leading causes of morbidity and mortality in older adults. Identifying associated factors for ESBL production may contribute to more appropriate empirical treatment., Materials and Methods: This was a prospective observational study. Hospitalized patients of age > 65 with community-onset or hospital-acquired upper UTI due to E. coli or Klebsiella pneumoniae were included. A multivariate analysis was performed., Results: A total of 97 patients were included. ESBL prevalence among UTIs with E. coli or Klebsiella pneumoniae was 69.1% ( n = 67). CRP values at the time of UTI diagnosis were found to be significantly higher in the ESBL-producing group ( p = 0.004). The multivariate analysis revealed that male gender (OR: 2.72, CI: 1.02-7.25), prior recurrent UTI (OR: 3.14, CI: 1.21-8.14), and the development of secondary bacteremia (OR: 4.95, CI: 1.03-23.89) were major associated factors for UTI in older adults due to ESBL-producing E. coli and Klebsiella pneumoniae., Conclusion: Severe UTI in older men with a history of recurrent UTI may be a warning to the clinician for ESBL production in the setting of high ESBL prevalence. Carbapenems may be prioritized in the empirical treatment of patients with known risk factors for ESBL., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Alkan, Balkan, Surme, Bayramlar, Kaya, Karaali, Mete, Aygun, Tabak and Saltoglu.)
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- 2024
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8. TW68, cryptochromes stabilizer, regulates fasting blood glucose levels in diabetic ob/ob and high fat-diet-induced obese mice.
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Surme S, Ergun C, Gul S, Akyel YK, Gul ZM, Ozcan O, Ipek OS, Akarlar BA, Ozlu N, Taskin AC, Turkay M, Gören AC, Baris I, Ozturk N, Guzel M, Aydin C, Okyar A, and Kavakli IH
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- Animals, Mice, Cryptochromes genetics, Blood Glucose, Mice, Obese, Glucagon, Circadian Rhythm physiology, Mammals, Fasting, Diabetes Mellitus, Type 2 drug therapy, Circadian Clocks
- Abstract
Cryptochromes (CRYs), transcriptional repressors of the circadian clock in mammals, inhibit cAMP production when glucagon activates G-protein coupled receptors. Therefore, molecules that modulate CRYs have the potential to regulate gluconeogenesis. In this study, we discovered a new molecule called TW68 that interacts with the primary pockets of mammalian CRY1/2, leading to reduced ubiquitination levels and increased stability. In cell-based circadian rhythm assays using U2OS Bmal1-dLuc cells, TW68 extended the period length of the circadian rhythm. Additionally, TW68 decreased the transcriptional levels of two genes, Phosphoenolpyruvate carboxykinase 1 (PCK1) and Glucose-6-phosphatase (G6PC), which play crucial roles in glucose biosynthesis during glucagon-induced gluconeogenesis in HepG2 cells. Oral administration of TW68 in mice showed good tolerance, a good pharmacokinetic profile, and remarkable bioavailability. Finally, when administered to fasting diabetic animals from ob/ob and HFD-fed obese mice, TW68 reduced blood glucose levels by enhancing CRY stabilization and subsequently decreasing the transcriptional levels of Pck1 and G6pc. These findings collectively demonstrate the antidiabetic efficacy of TW68 in vivo, suggesting its therapeutic potential for controlling fasting glucose levels in the treatment of type 2 diabetes mellitus., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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9. Rapid determination of colistin resistance in Klebsiella pneumoniae by MALDI-TOF peak based machine learning algorithm with MATLAB.
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Iskender S, Heydarov S, Yalcin M, Faydaci C, Kurt O, Surme S, and Kucukbasmaci O
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- Humans, Klebsiella pneumoniae, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Machine Learning, Algorithms, Microbial Sensitivity Tests, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Colistin pharmacology, Klebsiella Infections diagnosis, Klebsiella Infections drug therapy
- Abstract
Introduction: To date, limited data exist on demonstrating the usefulness of machine learning (ML) algorithms applied to MALDI-TOF in determining colistin resistance among Klebsiella pneumoniae. We aimed to detect colistin resistance in K. pneumoniae using MATLAB on MALDI-TOF database., Materials and Methods: A total of 260 K. pneumoniae isolates were collected. Three ML models, namely, linear discriminant analysis (LDA), support vector machine, and Ensemble were used as ML algorithms and applied to training data set., Results: The accuracies for the training phase with 200 isolates were found to be 99.3%, 93.1%, and 88.3% for LDA, support vector machine, and Ensemble models, respectively. Accuracy, sensitivity, specificity, and precision values for LDA in the application test set with 60 K. pneumoniae isolates were 81.6%, 66.7%, 91.7%, and 84.2%, respectively., Conclusion: This study provides a rapid and accurate MALDI-TOF MS screening assay for clinical practice in identifying colistin resistance in K. pneumoniae., Competing Interests: Declaration of Competing Interest This study was financially supported by Scientific Research Projects Coordination Unit of Istanbul University-Cerrahpasa (project number: 33529). No writing assistance was utilized in the production of this manuscript., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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10. Determination of associated factors with death in Staphylococcus aureus bacteremia in hospitalized patients during the COVID-19 pandemic: A single-center, retrospective study.
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Tuncer G, Geyiktepe-Guclu C, Surme S, Faruk Bayramlar O, Copur B, Emre Ozdemir Y, Gorkem Guclu K, Pehlivanoglu F, Sengoz G, and Yildirim M
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- Humans, Male, Retrospective Studies, Female, Middle Aged, Aged, Risk Factors, SARS-CoV-2, Pandemics, COVID-19 mortality, Bacteremia mortality, Bacteremia microbiology, Staphylococcal Infections mortality, Hospital Mortality, Staphylococcus aureus isolation & purification
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The effect of COVID-19 on the outcomes of patients with Staphylococcus aureus bacteremia is still unknown., Aim: In this study, we aimed to determine associated factors for mortality in patients with S. aureus bacteremia and to explore the impact of prior COVID-19., Design and Setting: In this retrospective and single-center study, all adult patients (≥ 18 years old) with S. aureus bacteremia between March 2020 and February 2022 were included., Methods: The outcomes of our study were 14-day and 28-day hospital mortality after the first positive blood culture was obtained. Univariate and Cox regression analyses were performed., Results: A total of 140 patients with S. aureus bacteremia were included in the study. The median age was 64.5 (48.5-76) and 82 (58.5%) of the patients were male. 14-day and 28-day mortality rates were 28.6% and 37.1% respectively. Among patients with S. aureus bacteremia and previous COVID-19 history, 14-day and 28-day mortality rates were 33.9% (n = 21) and 41.9% (n = 26), respectively. Cox regression analysis revealed that Pitt bacteremia score, AST, urea, and previous antibiotic use were associated factors for 14-day mortality and 28-day mortality due to S. aureus bacteremia., Conclusions: This study justified the remarkable fatality of S. aureus bacteremia during the COVID-19 pandemic period and revealed that a high Pitt bacteremia score, increased levels of AST and urea, and previous antibiotic exposure were associated factors for mortality in patients with S. aureus bacteremia.
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- 2023
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11. Clinicopathological profile of peritoneal tuberculosis and a new scoring model for predicting mortality: an international ID-IRI study.
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Tanoglu A, Erdem H, Friedland JS, Ankaralı H, Garcia-Goez JF, Albayrak A, El-Kholy A, Ceviker SA, Amer F, Erol S, Darazam IA, Rabiei MM, Sarwar MZ, Zeb M, Nawaz H, Ceylan MR, Cernat R, Tasbakan M, Ayoade F, Ruch Y, Tigen ET, Angioni G, Rajani DP, Akhtar N, Surme S, Sengoz G, Karlıdag GE, Marino A, Ripon RK, Çağ Y, Aydın Ö, Akkoyunlu Y, Seyman D, Angamuthu K, Cascio A, Popescu CP, Sirmatel F, Eren E, Dar RE, Munu FU, Tanoglu EG, Echeverry E, Velez JD, Artuk C, Balin SO, Pandya N, Erdem A, Demiray EKD, and Aypak A
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- Female, Humans, Young Adult, Adult, Middle Aged, Male, Retrospective Studies, Isoniazid, Liver Cirrhosis, Antitubercular Agents therapeutic use, HIV Infections complications, HIV Infections drug therapy, Mycobacterium tuberculosis, Tuberculosis
- Abstract
Existing literature about peritoneal tuberculosis (TBP) is relatively insufficient. The majority of reports are from a single center and do not assess predictive factors for mortality. In this international study, we investigated the clinicopathological characteristics of a large series of patients with TBP and determined the key features associated with mortality. TBP patients detected between 2010 and 2022 in 38 medical centers in 13 countries were included in this retrospective cohort. Participating physicians filled out an online questionnaire to report study data. In this study, 208 patients with TBP were included. Mean age of TBP cases was 41.4 ± 17.5 years. One hundred six patients (50.9%) were females. Nineteen patients (9.1%) had HIV infection, 45 (21.6%) had diabetes mellitus, 30 (14.4%) had chronic renal failure, 12 (5.7%) had cirrhosis, 7 (3.3%) had malignancy, and 21 (10.1%) had a history of immunosuppressive medication use. A total of 34 (16.3%) patients died and death was attributable to TBP in all cases. A pioneer mortality predicting model was established and HIV positivity, cirrhosis, abdominal pain, weakness, nausea and vomiting, ascites, isolation of Mycobacterium tuberculosis in peritoneal biopsy samples, TB relapse, advanced age, high serum creatinine and ALT levels, and decreased duration of isoniazid use were significantly related with mortality (p < 0.05). This is the first international study on TBP and is the largest case series to date. We suggest that using the mortality predicting model will allow early identification of high-risk patients likely to die of TBP., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2023
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12. The Effects of Antimicrobial Resistance and the Compatibility of Initial Antibiotic Treatment on Clinical Outcomes in Patients With Diabetic Foot Infection.
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Saltoglu N, Surme S, Ezirmik E, Kadanali A, Kurt AF, Sahin Ozdemir M, Ak O, Altay FA, Acar A, Cakar ZS, Tulek N, and Kinikli S
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- Humans, Male, Middle Aged, Aged, Female, Anti-Bacterial Agents therapeutic use, Anti-Bacterial Agents pharmacology, Escherichia coli, Reinfection drug therapy, Drug Resistance, Bacterial, Bacteria, Staphylococcus aureus, Microbial Sensitivity Tests, Diabetic Foot diagnosis, Diabetic Foot drug therapy, Diabetic Foot microbiology, Diabetes Mellitus
- Abstract
We aimed to determine pathogen microorganisms, their antimicrobial resistance patterns, and the effect of initial treatment on clinical outcomes in patients with diabetic foot infection (DFI). Patients with DFI from 5 centers were included in this multicenter observational prospective study between June 2018 and June 2019. Multivariate analysis was performed for the predictors of reinfection/death and major amputation. A total of 284 patients were recorded. Of whom, 193 (68%) were male and the median age was 59.9 ± 11.3 years. One hundred nineteen (41.9%) patients had amputations, as the minor (n = 83, 29.2%) or major (n = 36, 12.7%). The mortality rate was 1.7% with 4 deaths. A total of 247 microorganisms were isolated from 200 patients. The most common microorganisms were Staphylococcus aureus (n = 36, 14.6%) and Escherichia coli (n = 32, 13.0%). Methicillin resistance rates were 19.4% and 69.6% in S aureus and coagulase-negative Staphylococcus spp., respectively. Multidrug-resistant Pseudomonas aeruginosa was detected in 4 of 22 (18.2%) isolates. Extended-spectrum beta-lactamase-producing Gram-negative bacteria were detected in 20 (38.5%) isolates of E coli (14 of 32) and Klebsiella spp. (6 of 20). When the initial treatment was inappropriate, Klebsiella spp. related reinfection within 1 to 3 months was observed more frequently. Polymicrobial infection ( p = .043) and vancomycin treatment ( p = .007) were independent predictors of reinfection/death. Multivariate analysis revealed vascular insufficiency ( p = .004), hospital readmission ( p = .009), C-reactive protein > 130 mg/dL ( p = .007), and receiving carbapenems ( p = .005) as independent predictors of major amputation. Our results justify the importance of using appropriate narrow-spectrum empirical antimicrobials because higher rates of reinfection and major amputation were found even in the use of broad-spectrum antimicrobials.
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- 2023
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13. Long-term follow-up of treatment-naïve HBeAg-negative patients with chronic hepatitis B.
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Ozdemir YE, Sahin Ozdemir M, Bayramlar OF, Surme S, Yildiz Kaya S, Karaali R, Balkan II, Mete B, Saltoglu N, and Tabak F
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- Humans, Hepatitis B e Antigens pharmacology, Hepatitis B e Antigens therapeutic use, Hepatitis B Surface Antigens pharmacology, Hepatitis B Surface Antigens therapeutic use, Retrospective Studies, Follow-Up Studies, Treatment Outcome, Tenofovir therapeutic use, Tenofovir pharmacology, Antiviral Agents therapeutic use, Antiviral Agents adverse effects, Hepatitis B virus genetics, DNA, Viral pharmacology, DNA, Viral therapeutic use, Viral Load, Hepatitis B, Chronic drug therapy
- Abstract
Background/aims: We aimed to explore long-term results of oral antiviral agents in treatment-naïve "HBeAg negative chronic hepatitis B (CHB)" and determine the factors affecting the complete virological response., Method: Patients with HBeAg-negative CHB who used oral antiviral agents for at least 3 years were evaluated retrospectively., Results: A total of 173 patients were recorded. The mean duration of treatment was 62.2 ± 28.9 months. Complete virological responses (CVR) were 82.8% (n = 53/64) in tenofovir disoproxil fumarate (TDF), 84.4% (n = 49/58) in lamivudine (LAM), 83.9% (n = 26/31) in entecavir (ETV), 95% in telbivudine (LdT) (n = 19/20) (p = 0.290). Multivariate analysis revealed age ≤ 40 (p = 0.012, 95%CI = 1.38-13.76, OR = 4.36) and baseline HBV DNA value (p = 0.003, 95%CI = 1.23-2.63, OR = 1.78) as independent factors for CVR. Virological breakthrough was detected in 29 (50%) patients on LAM therapy, two (6.4%) patients on ETV therapy, and two (10%) patients on LdT therapy. Treatment was switched to another antiviral agent due to osteoporosis in four patients in the TDF group, muscle pain in nine patients in the LDT group, and headache in one patient in the ETV group. Hepatocelluler cancer was detected in five patients. HBsAg seroclearance developed in two patients. Anti-HBs seroconversion was not detected., Conclusion: CVR was achieved at similar rates with all four antiviral agents, while younger age (≤ 40) and low baseline viral load were the main factors for virological response. However, drug resistance and virological breakthrough in the LAM group and side effects in the LdT group were detected during the long-term follow-up. Moreover, HBsAg seroclearance was achieved at very low rates with oral antiviral agents., (© 2022. The Author(s), under exclusive licence to Royal Academy of Medicine in Ireland.)
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- 2023
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14. Real-life evaluation of incidence and clinical outcomes of COVID-19 among healthcare workers during pre-vaccination and post-vaccination periods: A cross-sectional impact study.
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Ozdemir YE, Sezen AI, Surme S, Senoglu S, Yesilbag Z, Sahin Ozdemir M, Bayramlar OF, Duman EI, Bold N, Gedik H, and Kart Yasar K
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- Humans, Male, Young Adult, Adult, Female, Incidence, Cross-Sectional Studies, SARS-CoV-2, Health Personnel, Vaccination, COVID-19 epidemiology, COVID-19 prevention & control
- Abstract
Introduction: We aimed to evaluate the prevalence and clinical outcomes of COVID-19 in healthcare workers (HCWs) in the pre-vaccination and post-vaccination periods. In addition, we determined factors associated with the development of COVID-19 after vaccination., Methodology: In this analytical cross-sectional epidemiological study, HCWs who were vaccinated between January 14, 2021, and March 21, 2021, were included. HCWs were followed up for 105 days after the 2 doses of CoronaVac. Pre-vaccination and post-vaccination periods were compared., Results: A total of 1,000 HCWs were included, 576 patients (57.6%) were male, and the mean age was 33.2 ± 9.6 years. In the last 3 months during the pre-vaccination period, 187 patients had COVID-19, and the cumulative incidence of COVID-19 was 18.7%. Six of these patients were hospitalized. Severe disease was observed in three patients. In the first 3 months post-vaccination period, COVID-19 was detected in 50 patients, and the cumulative incidence of the disease was determined to be 6.1%. Hospitalization and severe disease were not detected. Age (p = 0.29), sex (OR = 1.5, p = 0.16), smoking (OR = 1.29, p = 0.43), and underlying diseases (OR = 1.6, p = 0.26) were not associated with post-vaccination COVID-19. A history of COVID-19 significantly reduced the likelihood of the development of post-vaccination COVID-19 in multivariate analysis (p = 0.002, OR = 0.16, 95% CI = 0.05-0.51)., Conclusions: CoronaVac significantly reduces the risk of SARS-CoV-2 infection and alleviates the severity of COVID-19 in the early period. Additionally, HCWs who have been infected and vaccinated with CoronaVac are less likely to be reinfected with COVID-19., Competing Interests: No Conflict of Interest is declared, (Copyright (c) 2023 Yusuf Emre Ozdemir, Aysegul Inci Sezen, Serkan Surme, Sevtap Senoglu, Zuhal Yesilbag, Meryem Sahin Ozdemir, Osman Faruk Bayramlar, Emine Ilay Duman, Nomin Bold, Habip Gedik, Kadriye Kart Yasar.)
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- 2023
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15. Long-term effects of COVID-19 on lungs and the clinical relevance: a 6-month prospective cohort study.
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Tuncer G, Geyiktepe-Guclu C, Surme S, Canel-Karakus E, Erdogan H, Bayramlar OF, Belge C, Karahasanoglu R, Copur B, Yazla M, Zerdali E, Nakir IY, Yildirim N, Kar B, Bozkurt M, Karanalbant K, Atasoy B, Takak H, Simsek-Yavuz S, Turkay R, M Sonmez M, Sengoz G, and Pehlivanoglu F
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- Humans, Prospective Studies, Disease Progression, Laboratories, Lung diagnostic imaging, COVID-19
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Background: We aimed to explore the prevalence of prolonged symptoms, pulmonary impairments and residual disease on chest tomography (CT) in COVID-19 patients at 6 months after acute illness. Methods: In this prospective, single-center study, hospitalized patients with radiologically and laboratory-confirmed COVID-19 were included. Results: A high proportion of the 116 patients reported persistent symptoms (n = 54; 46.6%). On follow-up CT, 33 patients (28.4%) demonstrated residual disease. Multivariate analyses revealed that only neutrophil-to-lymphocyte ratio was an independent predictor for residual disease. Conclusion: Hospitalized patients with mild/moderate COVID-19 still had persistent symptoms and were prone to develop long-term pulmonary sequelae on chest CT. However, it did not have a significant effect on long-term pulmonary functions.
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- 2023
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16. Water-borne oculoglandular tularemia: Two complicated cases and a review of the literature.
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Copur B and Surme S
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- Humans, Water, Francisella tularensis, Tularemia diagnosis, Tularemia drug therapy, Tularemia epidemiology
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Background: In this study, we presented two cases of late diagnosed complicated oculoglandular tularemia and reviewed the clinical features of oculoglandular tularemia in cases reported in the last ten years., Method: Tularemia was diagnosed when serum microagglutination test (MAT) was ≥ 1/160 titer or when there was at least a four-fold increase in MAT titers measured over a two-week interval. We searched the oculoglandular tularemia cases reported in the last 10 years in the PubMed and Google Academic engines., Results: Case 1 (19 M) and case 2 (15 M) had complaints of fever and burning in the eye. In both cases, the diagnosis of tularemia was delayed. Lymph node suppuration developed in both cases. A total of 19 cases of tularemia were found within the search. In the cases of oculoglandular tularemia reported in the last 10 years, submandibular and preauricular lymphadenopathy were most common after ocular findings and fever. The mean time to diagnosis was 41 ± 94 days, and the complication rate was 31.5%., Conclusion: Tularemia should definitely be considered in cases of fever and ocular findings, especially in endemic areas. In non-endemic areas, a good anamnesis and clinical suspicion can help diagnose the disease early and reduce the complication rate., Competing Interests: Declaration of competing interest The authors declare no competing interests., (Copyright © 2022 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2023
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17. Does Intra-operative Fluoroscopy Significantly Improve Component Position in a Primary Total Hip Arthroplasty? Our Experience in a Tertiary Care Hospital.
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Shah M, Vieira A, Mahajan A, Agrawal L, Shah D, Surme S, and Velankar A
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Background: Optimal component placement, equalization of leg lengths, and recreation of offset are important surgical objectives during total hip arthroplasty (THA). Historically, many surgeons have aimed for the Lewinnek's " safe zone," which is defined as 30°-50° of abduction and 5°-25° of anteversion. Methods for optimizing cup position include anatomic landmarks, room landmarks, acetabular cup coverage, and ischial or pubis palpation. Malposition of the acetabular component after total hip arthroplasty (THA) is related to dislocation of the prosthetic femoral head, increased polyethylene liner wear, and limited range of motion. The orientation of the acetabular component comprises inclination and anteversion. Although the inclination of the acetabular component can be easily measured on plain radiographs, the calculation of the anteversion is difficult. This study evaluates the effect of intra-operative fluoroscopy on component position, mainly anteversion and inclination of the acetabular cup, during a total hip arthroplasty., Methods: 106 hips undergoing total hip arthroplasty were assessed, and the decision to use fluoroscopy assistance was randomized based on a simple randomization technique. A total of 48 patients were operated on with fluoroscopy assistance and 58 patients without fluoroscopy assistance. All patients were evaluated postoperatively for version of component on anteroposterior radiographs of the hip using the method of Liaw et al. and for inclination of component on anteroposterior radiographs using the method of Woo and Morrey., Results: The mean version for the non-fluoroscopy (NF) group was 15.62° and the mean inclination was 44.22°, with 15.5% (9 out of 58) of the patients who did not fit into Lewinnek's safe zone for version and 25.9% (15 out of 58) of the patients who were outliers for inclination of the acetabular cup position. The mean version for the fluoroscopy group (F) was 11.80° and the mean inclination was 47.05°, with 0% (0 out of 48) of the patients who did not fit into Lewinnek's safe zone for version and 12.5% (6 out of 48) of the patients who were outliers for inclination of the acetabular cup position., Conclusion: While the mean version and inclination of the acetabular component were comparable for both groups, outliers for version and inclination were far more common in the group of patients who underwent surgery without intra-operative fluoroscopic assistance. Therefore, intra-operative fluoroscopy imaging confirms appropriate inclination (abduction) and version of acetabular cup position according to Lewinnek's safe zone and prevents undesirable component position during a total hip arthroplasty while adding a maximum of 5 min to the operative time., Competing Interests: Conflict of InterestThe authors declare that there is no conflict of interest relevant to this article., (© Indian Orthopaedics Association 2022, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2022
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18. Effectiveness of CoronaVac vaccination against COVID-19 development in healthcare workers: real-life data.
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Copur B, Surme S, Sayili U, Tuncer G, Pehlivanoglu F, and Sengoz G
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- Humans, SARS-CoV-2, COVID-19 Vaccines, Health Personnel, Vaccination, COVID-19 prevention & control
- Abstract
Background: This study was designed to investigate the effectiveness of CoronaVac in preventing COVID-19 in healthcare workers (HCWs) during the Alpha variant-dominant period. Materials & methods: Follow-up was initiated 14 days after the second dose for double-dose vaccinated HCWs and on 25 February 2021, for the unvaccinated group. The incidence rate ratio was calculated to estimate the unadjusted effectiveness. Cox regression was used to adjust the effectiveness of CoronaVac. Results & Conclusion: The adjusted effectiveness of CoronaVac against COVID-19 was 65% (95% CI: 50-75%). Compared with the results of the phase III trial conducted in Turkey, a lower effectiveness of CoronaVac against COVID-19 was detected in this real-life study. This finding suggests that mass vaccination and booster doses are needed.
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- 2022
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19. Blood types (ABO/Rhesus) and SARS-CoV-2 infection: a retrospective, cross-sectional study in 2828 healthcare workers.
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Copur B, Surme S, Sayili U, Tuncer G, Ozcelik MN, Yilmaz-Ak H, Topal M, Ustun-Al S, Pehlivanoglu F, and Sengoz G
- Abstract
Background: The authors aimed to investigate the relationship between ABO/Rhesus blood types and the risk of SARS-CoV-2 infection and hospitalization in healthcare workers (HCWs). Materials & methods: This study compared HCWs with (n = 510) and without (n = 2318) SARS-CoV-2 infection. Risk factors for SARS-CoV-2 infection and hospitalization in HCWs were shown as odds ratios with 95% CI. Results: Blood group O was found to be protective by 20% from the risk of developing SARS-CoV-2 infection in HCWs (29.2 vs 33.8%; odds ratio: 0.808; 95% CI: 0.655-0.996; p = 0.045). The prevalence of group O was lower in hospitalized patients than in outpatients (25 vs 29.5%; p = 0.614). Conclusion: These findings suggest that blood groups are associated with the development of SARS-CoV-2 infection., (© 2022 Future Medicine Ltd.)
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- 2022
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20. Changing Bacterial Etiology and Antimicrobial Resistance Profiles as Prognostic Determinants of Diabetic Foot Infections: A Ten-Year Retrospective Cohort Study.
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Surme S, Saltoglu N, Kurt AF, Karaali R, Balkan II, Baghaki S, Caglar B, Ozdemir M, Vatan A, Togluk-Yigitoglu E, Budak B, Arapi B, Seker A, Can G, Gonen MS, and Cetinkale O
- Subjects
- Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Bacteria, Carbapenems, Cohort Studies, Drug Resistance, Bacterial, Drug Resistance, Multiple, Bacterial, Humans, Microbial Sensitivity Tests, Prognosis, Pseudomonas aeruginosa, Reinfection, Retrospective Studies, Acinetobacter baumannii, Diabetes Mellitus, Diabetic Foot epidemiology
- Abstract
Background: In this single-center study, we analyzed a retrospective cohort of patients with diabetic foot infections (DFIs) between 2011 and 2020. Patients and Methods: The first and second five-year periods were compared. A poor prognosis was defined as a primary composite end point including re-infection, major amputation, or mortality at six months. Results: A total of 484 patients were enrolled. Overall, 269 patients had the primary composite end point. A substantial decrease was detected in the second five-year period in terms of re-infection (n = 132, 66.0% vs. n = 68, 23.9%; p < 0.001) and mortality (n = 22, 11.0% vs. n = 7, 2.5%; p < 0.001). A total of 798 micro-organisms were isolated from 484 patients. A substantial increase was detected in polymicrobial infections (48.5% vs. 65.1%; p = 0.001) as well as Streptococcus spp. (2.5% vs. 9.2%; p = 0.003), Corynebacterium spp. (9.5% vs. 22.9%; p < 0.001), and extended-spectrum β-lactamase (ESBL) producing Escherichia coli (3.0% vs. 12.7%; p < 0.001) in the second five-year period, whereas the prevalence of multi-drug-resistanct (MDR) Pseudomonas aeruginosa (17.0% vs. 10.2%; p = 0.029) and carbapenem-resistant Acinetobacter baumannii (7.5% vs. 2.8%; p = 0.017) decreased. Multivariable regression analysis revealed that MDR Pseudomonas aeruginosa (odds ratio [OR], 1.917; 95% confidence interval [CI], 1.074-3.420; p = 0.028) and carbapenem-resistant Acinetobacter baumannii (OR, 3.069; 95% CI, 1.114-8.453; p = 0.030) were independent predictors for poor prognosis. Conclusions: This 10-year cohort study provides reassuring information about the changing epidemiology of DFIs and the prognostic determinants in patients with DFIs.
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- 2022
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21. Vaccine hesitancy and refusal among parents: An international ID-IRI survey.
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Cag Y, Al Madadha ME, Ankarali H, Cag Y, Demir Onder K, Seremet-Keskin A, Kizilates F, Čivljak R, Shehata G, Alay H, Alkan-Ceviker S, Yilmaz-Karadag F, Cagla-Sonmezer M, Ezzelarab Ramadan M, Magdelena DI, Radic LB, Arapovic J, Kesmez-Can F, El-Sayed NM, Campbell OB, Eser-Karlidag G, Khedr R, Isik ME, Petrov MM, Cernat R, Erturk U, Uygun-Kizmaz Y, Huljev E, Amer F, Ceylan MR, Marino A, Kul G, Damar-Cakirca T, Khalaf YM, Isik AC, Ariyo OE, Hakyemez IN, Ripon RK, Afkhamzadeh A, Dindar-Demiray EK, Gideon OO, Belitova M, Altindis M, El-Sokkary R, Tekin R, Garout MA, Zajkowska J, Fazal F, Bekcibasi M, Hukic M, Nizamuddin S, Surme S, Fernandez R, El-Kholy A, Akhtar N, Ijaz S, Cortegiani A, Meric-Koc M, Hasman H, Maduka AV, ElKholy JA, Sari S, Khan MA, Akin Y, Kose S, and Erdem H
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- Child, Cross-Sectional Studies, Female, Health Knowledge, Attitudes, Practice, Humans, Male, Parents, Patient Acceptance of Health Care, Surveys and Questionnaires, Vaccination, Communicable Diseases, Vaccination Hesitancy
- Abstract
Introduction: Although vaccines are the safest and most effective means to prevent and control infectious diseases, the increasing rate of vaccine hesitancy and refusal (VHR) has become a worldwide concern. We aimed to find opinions of parents on vaccinating their children and contribute to available literature in order to support the fight against vaccine refusal by investigating the reasons for VHR on a global scale., Methodology: In this international cross-sectional multicenter study conducted by the Infectious Diseases International Research Initiative (ID-IRI), a questionnaire consisting of 20 questions was used to determine parents' attitudes towards vaccination of their children., Results: Four thousand and twenty-nine (4,029) parents were included in the study and 2,863 (78.1%) were females. The overall VHR rate of the parents was found to be 13.7%. Nineteen-point three percent (19.3%) of the parents did not fully comply with the vaccination programs. The VHR rate was higher in high-income (HI) countries. Our study has shown that parents with disabled children and immunocompromised children, with low education levels, and those who use social media networks as sources of information for childhood immunizations had higher VHR rates (p < 0.05 for all)., Conclusions: Seemingly all factors leading to VHR are related to training of the community and the sources of training. Thus, it is necessary to develop strategies at a global level and provide reliable knowledge to combat VHR., Competing Interests: No Conflict of Interest is declared, (Copyright (c) 2022 Yakup Cag, Mohammad Emad al Madadha, Handan Ankarali, Yasemin Cag, Kubra Demir Onder, Aysegul Seremet-Keskin, Filiz Kizilates, Rok Civljak, Ghaydaa Shehata, Handan Alay, Sevil Alkan-Ceviker, Fatma Yilmaz-Karadag, Meliha Cagla-Sonmezer, Manar Ezzelarab Ramadan, Dumitru Irina Magdelena, Ljiljana Betica Radic, Jurica Arapovic, Fatma Kesmez-Can, Nagwa Mostafa El-Sayed, Oladapo Babatunde Campbell, Gulden Eser-Karlidag, Reham Khedr, Mehmet Emirhan Isik, Michael Mihailov Petrov, Roxana Cernat, Umran Erturk, Yesim Uygun-Kizmaz, Eva Huljev, Fatma Amer, Mehmet Resat Ceylan, Andrea Marino, Gulnur Kul, Tuba Damar-Cakirca, Yara Mohsen Khalaf, Arzu Cennet Isik, Olumuyiwa Elijah Ariyo, Ismail Necati Hakyemez, Rezaul Karim Ripon, Abdorrahim Afkhamzadeh, Emine Kubra Dindar-Demiray, Osasona Oluwadamilola Gideon, Maya Belitova, Mustafa Altindis, Rehab El-Sokkary, Recep Tekin, Mohammed Ahmed Garout, Joanna Zajkowska, Farhan Fazal, Muhammed Bekcibasi, Mirsada Hukic, Summiya Nizamuddin, Serkan Surme, Ricardo Fernandez, Amani El-Kholy, Nasim Akhtar, Saadia Ijaz, Andrea Cortegiani, Meliha Meric-Koc, Hakan Hasman, Agah Victor Maduka, Jehan Ali ElKholy, Sema Sari, Mumtaz Ali Khan, Yasemin Akin, Sukran Kose, Hakan Erdem.)
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- 2022
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22. Novel biomarker-based score (SAD-60) for predicting mortality in patients with COVID-19 pneumonia: a multicenter retrospective cohort of 1013 patients.
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Surme S, Tuncer G, Bayramlar OF, Copur B, Zerdali E, Nakir IY, Yazla M, Buyukyazgan A, Cinar AR, Kurekci Y, Alkan M, Ozdemir YE, Sengoz G, and Pehlivanoglu F
- Subjects
- Aged, Albumins, Biomarkers, Female, Hospital Mortality, Humans, Male, Middle Aged, Prognosis, Retrospective Studies, SARS-CoV-2, Severity of Illness Index, COVID-19
- Abstract
Background: The aim was to explore a novel risk score to predict mortality in hospitalized patients with COVID-19 pneumonia. Methods: This was a retrospective, multicenter study. Results: A total of 1013 patients with COVID-19 were included. The mean age was 60.5 ± 14.4 years, and 581 (57.4%) patients were male. In-hospital death occurred in 124 (12.2%) patients. Multivariate analysis revealed peripheral capillary oxygen saturation (SpO2), albumin, D-dimer and age as independent predictors. The mortality score model was given the acronym SAD-60, representing S pO2, A lbumin, D -dimer, age ≥60 years. The SAD-60 score (0.776) had the highest area under the curve compared with CURB-65 (0.753), NEWS2 (0.686) and qSOFA (0.628) scores. Conclusion: The SAD-60 score has a promising predictive capacity for mortality in hospitalized patients with COVID-19.
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- 2022
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23. Surgical Repair of Traumatic Rupture of Tibialis Posterior Tendon in 32-Year-Old Male.
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Agrawal L, Ghodke A, Issrani M, Kotecha H, Shah D, and Surme S
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Introduction: This article reports a case of surgical repair of traumatic rupture of tibialis posterior (TP) tendon in a young healthy male after alleged history of grinder (heavy machine) injury over the foot, with the help of a suture anchor and running whip stitch followed by immobilization in a below knee slab postoperatively. The acute rupture of the TP tendon (TPT), compared to an acute rupture of the Achilles tendon, is a quite uncommon disease to be diagnosed in the emergency department setting. In most cases symptoms related to a TP dysfunction, like weakness, pain along the course of the tendon, swelling in the region of the medial malleolus, and the partial or complete loss of the medial arch with a flatfoot deformity precede the complete rupture of the tendon., Case Report: A 32-year-old healthy male presented to the outpatient clinic with a history of pain and swelling in the right foot for 10 months after alleged history of sustaining a grinder (heavy machine) injury to the medial aspect of the right foot 10 months ago. Anteroposterior and oblique radiographs of the right foot suggestive of no skeletal pathology and patient was managed conservatively with analgesic, anti-inflammatory, and compression bandaging. A magnetic resource imaging of the right foot was advised after no relief of symptoms and was suggestive of high-grade tear of the distal tibialis posterior tendon from the level of medial malleolus to its insertion. Surgical repair of the TPT was planned with a suture anchor placed in the navicular bone. The procedure was carried out under spinal anesthesia and there were no complications in the intraoperative or post-operative period. Patient was given a below knee slab with the foot in inversion postoperatively which was revised into a below knee cast with foot in inversion. Six-week post-operative follow-up, cast was removed and physiotherapy was started for the patient that included Active Ankle ROM and Gait Training, patient had a Modified Olerud and Molander Score of 45/100. Six-month post-operative follow-up, patient was relieved of chronic pain and was able walk and stand on his toes without pain and showed significant improvement in gait with Modified Olerud and Molander Score 90/100., Conclusion: The TPT is the main dynamic stabilizer of the medial longitudinal arch of the foot. With appropriate surgical technique, adequate post-operative immobilization followed by physiotherapy surgical repair of the TPT helped alleviate the chronic pain experienced by the patient during weight bearing activities., Competing Interests: Conflict of Interest: Nil, (Copyright: © Indian Orthopaedic Research Group.)
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- 2022
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24. Predictors of Long-term Outcomes in the Older Adults with Community-Acquired Pneumonia.
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Surme S, Balkan II, Bayramlar OF, Kara Ali R, Mete B, Tabak F, and Saltoğlu N
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- Aged, Aged, 80 and over, Comorbidity, Female, Hospitalization statistics & numerical data, Humans, Male, Middle Aged, Patient Readmission, Respiration, Artificial adverse effects, Retrospective Studies, Risk Factors, Turkey, Community-Acquired Infections mortality, Pneumonia mortality
- Abstract
Introduction: We aimed to determine the indicators for poor long-term outcome in older adults with community-acquired pneumonia (CAP)., Methodology: Patients with CAP requiring hospitalization were included in this retrospective study. The long-term mortality was defined as all-cause 1-year mortality following hospital admission., Results: A total of 145 patients with CAP were recorded. The median age was 70 (18-103), of whom 94 (65%) were ≥ 65 years old and 86 (59.5%) were male. Long-term mortality rates following CAP requiring hospitalization were substantially high in both the younger (n = 16, 31.4%) and older adults (n=43, 45.7%). In univariate analysis, the Pneumonia Severity Index (PSI) (p = 0.007), mechanical ventilation (p > 0.001), mental status changes (p = 0.018) as well as the modified Charlson Comorbidity Index (p=0.001), presence of malignancy (p < 0.001) and hospital readmission (p < 0.001) were associated with long-term mortality in the older group. Our results revealed that the need for mechanical ventilation (OR = 47.61 CI = 5.38-500.0, p = 0.001) and hospital readmission (OR = 15.87 CI = 5.26-47.61, p < 0.001) were major independent predictors of 1-year mortality., Conclusions: Clinicians should consider the lethal possibilities of CAP even after hospital discharge. The need for mechanical ventilation and hospital readmission may predict long-term mortality. Therefore, the patients who have these predictors should be closely monitored., Competing Interests: No Conflict of Interest is declared, (Copyright (c) 2021 Serkan Surme, Ilker Inanc Balkan, Osman Faruk Bayramlar, Ritvan Kara Ali, Bilgul Mete, Fehmi Tabak, Nese Saltoglu.)
- Published
- 2021
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25. Comparison of clinical, laboratory and radiological features in confirmed and unconfirmed COVID-19 patients.
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Surme S, Tuncer G, Copur B, Zerdali E, Nakir IY, Yazla M, Bayramlar OF, Buyukyazgan A, Cinar ARK, Balli H, Kurekci Y, Pehlivanoglu F, and Sengoz G
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Blood Cell Count, COVID-19 blood, COVID-19 diagnostic imaging, COVID-19 virology, Female, Humans, Male, Middle Aged, Radiography, Retrospective Studies, SARS-CoV-2 classification, SARS-CoV-2 genetics, SARS-CoV-2 isolation & purification, Thorax diagnostic imaging, Tomography, X-Ray Computed, Young Adult, COVID-19 diagnosis
- Abstract
Background: We aimed to compare the clinical, laboratory and radiological findings of confirmed COVID-19 and unconfirmed patients. Methods: This was a single-center, retrospective study. Results: Overall, 620 patients (338 confirmed COVID-19 and 282 unconfirmed) were included. Confirmed COVID-19 patients had higher percentages of close contact with a confirmed or probable case. In univariate analysis, the presence of myalgia and dyspnea, decreased leukocyte, neutrophil and platelet counts were best predictors for SARS-CoV-2 RT-PCR positivity. Multivariate analyses revealed that only platelet count was an independent predictor for SARS-CoV-2 RT-PCR positivity. Conclusion: Routine complete blood count may be helpful for distinguishing COVID-19 from other respiratory illnesses at an early stage, while PCR testing is unique for the diagnosis of COVID-19.
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- 2021
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26. Hepatitis B virus prevalence, immunization and immune response in people living with HIV/AIDS in Istanbul, Turkey: a 21-year data analysis.
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Zerdali E, Nakir IY, Surme S, and Yildirim M
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- Adult, Antibody Formation, Data Analysis, Hepatitis B Antibodies, Hepatitis B virus, Humans, Prevalence, Turkey epidemiology, HIV Infections complications, Hepatitis B complications, Hepatitis B epidemiology, Hepatitis B prevention & control, Hepatitis B Vaccines administration & dosage, Vaccination statistics & numerical data
- Abstract
Objective: We aimed to determine Hepatitis B virus (HBV) prevalence, immune status, and the prevalence of antibody response in people living with HIV/AIDS (PLWHA) in Istanbul, Turkey., Methods: The study includes PLWHA aged 18 years and older who were followed-up for at least 6 months from 1997 to 2018., Results: Of the 653 patients with PLWHA, 99 (15.2%) were both antiHBc-IgG and antiHBs positive, 120 (18.3%) were antiHBc-IgG positive/antiHBs negative. HBsAg was positive in 40 (6.1%) patients. HBsAg positive coinfection (≤40 years 4.6% vs. >40 years 21.7%, p<0.001) and antiHBc-IgG positivity/antiHBs negativity (≤40 years 14.0% vs. >40 years 26.5, p<0.001) were higher in PLWHA older than 40 years. The prevalence of HIV/HBV coinfection reached a peak level of 22.2% in 2004, and it decreased to 3.3% in 2018. The prevalence of immunization before HIV diagnosis was low (15.6%). The prevalence of antibody response (anti-HBs>10 IU/L) after immunization for HBV was 50%. A higher protective response was associated with CD4+≥350 cell/mm3 (59.3%, p=0.014)., Conclusion: HBV coexistence in PLWHA remains an imperatively important problem. The most conclusive methods in solving this problem are to prevent transmission by immunization and control measures. Also, HBV screening should in no manner be neglected in PLWHA., (© 2021 Zerdali E et al.)
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- 2021
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27. Predictors of Intensive Care Unit Admission or Mortality in Patients with Coronavirus Disease 2019 Pneumonia in Istanbul, Turkey.
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Surme S, Buyukyazgan A, Bayramlar OF, Cinar AK, Copur B, Zerdali E, Tuncer G, Balli H, Nakir IY, Yazla M, Kurekci Y, Pehlivanoglu F, and Sengoz G
- Subjects
- Adult, Aged, COVID-19 diagnosis, COVID-19 mortality, Female, Hospital Mortality, Humans, Male, Middle Aged, Prognosis, Retrospective Studies, Risk Factors, SARS-CoV-2, Turkey epidemiology, COVID-19 epidemiology, Hospitalization statistics & numerical data, Intensive Care Units statistics & numerical data
- Abstract
We aimed to determine the predictors of intensive care unit (ICU) admission or death in patients with coronavirus disease 2019 (COVID-19) pneumonia. This retrospective, single-center study included patients aged ≥18 years who were diagnosed with COVID-19 pneumonia (laboratory and radiologically confirmed) between March 9 and April 8, 2020. The composite endpoint was ICU admission or in-hospital mortality. Univariate and multivariate logistic regression analyses were performed to evaluate the factors associated with the composite endpoint. A total of 336 patients with COVID-19 pneumonia were evaluated. The median age was 54 years (interquartile range: 21), and 187 (55.7%) were men. Fifty-one (15.2%) patients were admitted to the ICU. In-hospital mortality occurred in 33 patients (9.8%). In the univariate analysis, 17 parameters were associated with the composite endpoint, and procalcitonin had the highest odds ratio (odds ratio [OR] = 36.568, confidence interval [CI] = 5.145-259.915). Our results revealed that body temperature (OR = 1.489, CI = 1.023-2.167, P = 0.037), peripheral capillary oxygen saturation (SpO2) (OR = 0.835, CI = 0.773-0.901, P < 0.001), and consolidation (> 25%) on chest computed tomography (OR = 3.170, CI = 1.218-8.252, P = 0.018) at admission were independent predictors. As a result, increased body temperature, decreased SpO2, a high level of procalcitonin, and degree of consolidation on chest computed tomography may predict a poor prognosis and have utility in the management of patients.
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- 2021
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28. National Early Warning Score 2 and laboratory predictors correlate with clinical deterioration in hospitalized patients with COVID-19.
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Tuncer G, Surme S, Bayramlar OF, Karanalbant HK, Copur B, Yazla M, Zerdali E, Nakir IY, Cinar AR, Buyukyazgan A, Balli H, Kurekci Y, Simsek-Yavuz S, Sonmez MM, Sengoz G, and Pehlivanoglu F
- Subjects
- Albumins metabolism, Hospital Mortality, Humans, Lymphocytes metabolism, Neutrophils metabolism, Odds Ratio, COVID-19 metabolism, Procalcitonin metabolism
- Abstract
Aim: We aimed to determine the prognostic values of the National Early Warning Score 2 (NEWS2) and laboratory parameters during the first week of COVID-19. Materials & methods: All adult patients who were hospitalized for confirmed COVID-19 between 11 March and 11 May 2020 were retrospectively included. Results: Overall, 611 patients were included. Our results showed that NEWS2, procalcitonin, neutrophil/lymphocyte ratio and albumin at D0, D3, D5 and D7 were the best predictors for clinical deterioration defined as a composite of ICU admission during hospitalization or in-hospital death. Procalcitonin had the highest odds ratio for clinical deterioration on all days. Conclusion: This study provides a list of several laboratory parameters correlated with NEWS2 and potential predictors for clinical deterioration in patients with COVID-19.
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- 2021
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29. Nanoengineering InP Quantum Dot-Based Photoactive Biointerfaces for Optical Control of Neurons.
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Karatum O, Aria MM, Eren GO, Yildiz E, Melikov R, Srivastava SB, Surme S, Dogru IB, Bahmani Jalali H, Ulgut B, Sahin A, Kavakli IH, and Nizamoglu S
- Abstract
Light-activated biointerfaces provide a non-genetic route for effective control of neural activity. InP quantum dots (QDs) have a high potential for such biomedical applications due to their uniquely tunable electronic properties, photostability, toxic-heavy-metal-free content, heterostructuring, and solution-processing ability. However, the effect of QD nanostructure and biointerface architecture on the photoelectrical cellular interfacing remained unexplored. Here, we unravel the control of the photoelectrical response of InP QD-based biointerfaces via nanoengineering from QD to device-level. At QD level, thin ZnS shell growth (∼0.65 nm) enhances the current level of biointerfaces over an order of magnitude with respect to only InP core QDs. At device-level, band alignment engineering allows for the bidirectional photoelectrochemical current generation, which enables light-induced temporally precise and rapidly reversible action potential generation and hyperpolarization on primary hippocampal neurons. Our findings show that nanoengineering QD-based biointerfaces hold great promise for next-generation neurostimulation devices., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Karatum, Aria, Eren, Yildiz, Melikov, Srivastava, Surme, Dogru, Bahmani Jalali, Ulgut, Sahin, Kavakli and Nizamoglu.)
- Published
- 2021
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30. Swab Samples in Diabetic Foot Infections: Easy to Obtain but Difficult to Interpret.
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Surme S, Ozdemir YE, and Ozdemir MS
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- Humans, Specimen Handling, Communicable Diseases, Diabetes Mellitus, Diabetic Foot diagnosis
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- 2021
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31. Comparison of standard prophylactic and preemptive therapeutic low molecular weight heparin treatments in hospitalized patients with COVID-19.
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Copur B, Surme S, Sayili U, Tuncer G, Zerdali E, Yazla M, Nakir IY, Buyukyazgan A, Kurt-Cinar AR, Balli H, Kurekci Y, Pehlivanoglu F, and Sengoz G
- Subjects
- Heparin, Hospitalization, Humans, Male, Middle Aged, Retrospective Studies, Anticoagulants administration & dosage, COVID-19 therapy, Heparin, Low-Molecular-Weight administration & dosage
- Abstract
Ntroduction: Anticoagulant treatment approach in patients with COVID-19 is not well studied and not standardized. We aimed to compare the effects of standard prophylactic and pre-emptive therapeutic Low-Molecular-weight Heparin (LMWH) treatment approaches on mortality in patients with COVID-19., Patients and Methods: This retrospective and single-centre study includes patients aged ≥ 18 years, who were diagnosed with COVID-19 and treated with LMWH during the hospital stay. Therapeutic dose of LMWH was defined as 1 mg/kg subcutaneously twice daily and prophylactic dose of LMWH was defined as 40 mg subcutaneously once daily., Results: Among the 336 patients diagnosed with COVID-19 pneumonia, 115 patients, who received LMWH were included in the study. The mean age was 58.6 ± 13.3 and 58 (50.4 %) of the patients were male. Sixty-nine (60 %) of the patients were treated with prophylactic and 46 (40 %) therapeutic LMWH.In-hospital mortality was not different between patients treated therapeutic LMWH and prophylactic LMWH by the multivariate regression analysis (OR=2.187, 95% CI 0.484-9.880, p=0.309) and the propensity score modelling (OR=1.586, 95% CI 0.400-6.289, p=0.512.)CONCLUSION: Clinicians should consider the potential risks and benefits of standard prophylactic and pre-emptive therapeutic LMWH. Therefore, anticoagulant therapy should be individualized in patients with COVID-19 (Tab. 3, Ref. 28).
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- 2021
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32. The Arg-293 of Cryptochrome1 is responsible for the allosteric regulation of CLOCK-CRY1 binding in circadian rhythm.
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Gul S, Aydin C, Ozcan O, Gurkan B, Surme S, Baris I, and Kavakli IH
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- ARNTL Transcription Factors chemistry, ARNTL Transcription Factors genetics, ARNTL Transcription Factors metabolism, Allosteric Regulation, Amino Acid Substitution, Animals, Arginine chemistry, Arginine genetics, Arginine metabolism, HEK293 Cells, Humans, Mice, Mice, Knockout, Mutation, Missense, Period Circadian Proteins chemistry, Period Circadian Proteins genetics, Period Circadian Proteins metabolism, Polymorphism, Single Nucleotide, Protein Binding, Protein Structure, Secondary, Transcription, Genetic, CLOCK Proteins chemistry, CLOCK Proteins genetics, CLOCK Proteins metabolism, Circadian Rhythm, Cryptochromes chemistry, Cryptochromes genetics, Cryptochromes metabolism, Molecular Dynamics Simulation
- Abstract
Mammalian circadian clocks are driven by transcription/translation feedback loops composed of positive transcriptional activators (BMAL1 and CLOCK) and negative repressors (CRYPTOCHROMEs (CRYs) and PERIODs (PERs)). CRYs, in complex with PERs, bind to the BMAL1/CLOCK complex and repress E-box-driven transcription of clock-associated genes. There are two individual CRYs, with CRY1 exhibiting higher affinity to the BMAL1/CLOCK complex than CRY2. It is known that this differential binding is regulated by a dynamic serine-rich loop adjacent to the secondary pocket of both CRYs, but the underlying features controlling loop dynamics are not known. Here we report that allosteric regulation of the serine-rich loop is mediated by Arg-293 of CRY1, identified as a rare CRY1 SNP in the Ensembl and 1000 Genomes databases. The p.Arg293His CRY1 variant caused a shortened circadian period in a Cry1
-/- Cry2-/- double knockout mouse embryonic fibroblast cell line. Moreover, the variant displayed reduced repressor activity on BMAL1/CLOCK driven transcription, which is explained by reduced affinity to BMAL1/CLOCK in the absence of PER2 compared with CRY1. Molecular dynamics simulations revealed that the p.Arg293His CRY1 variant altered a communication pathway between Arg-293 and the serine loop by reducing its dynamicity. Collectively, this study provides direct evidence that allosterism in CRY1 is critical for the regulation of circadian rhythm., Competing Interests: Conflict of interest—The authors declare that they have no conflicts of interest with the contents of this article., (© 2020 Gul et al.)- Published
- 2020
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33. Organic Photovoltaic Pseudocapacitors for Neurostimulation.
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Han M, Srivastava SB, Yildiz E, Melikov R, Surme S, Dogru-Yuksel IB, Kavakli IH, Sahin A, and Nizamoglu S
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- Animals, Electrodes, Electrolytes, Gold chemistry, Humans, Particle Size, Rats, Surface Properties, Tumor Cells, Cultured, Biocompatible Materials chemistry, Bridged Bicyclo Compounds, Heterocyclic chemistry, Neurons physiology, Photic Stimulation, Polymers chemistry, Polystyrenes chemistry
- Abstract
Neural interfaces are the fundamental tools to understand the brain and cure many nervous-system diseases. For proper interfacing, seamless integration, efficient and safe digital-to-biological signal transduction, and long operational lifetime are required. Here, we devised a wireless optoelectronic pseudocapacitor converting the optical energy to safe capacitive currents by dissociating the photogenerated excitons in the photovoltaic unit and effectively routing the holes to the supercapacitor electrode and the pseudocapacitive electrode-electrolyte interfacial layer of PEDOT:PSS for reversible faradic reactions. The biointerface showed high peak capacitive currents of ∼3 mA·cm
-2 with total charge injection of ∼1 μC·cm-2 at responsivity of 30 mA·W-1 , generating high photovoltages over 400 mV for the main eye photoreception colors of blue, green, and red. Moreover, modification of PEDOT:PSS controls the charging/discharging phases leading to rapid capacitive photoresponse of 50 μs and effective membrane depolarization at the single-cell level. The neural interface has a device lifetime of over 1.5 years in the aqueous environment and showed stability without significant performance decrease after sterilization steps. Our results demonstrate that adopting the pseudocapacitance phenomenon on organic photovoltaics paves an ultraefficient, safe, and robust way toward communicating with biological systems.- Published
- 2020
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34. An eleven-year cohort of bloodstream infections in 552 febrile neutropenic patients: resistance profiles of Gram-negative bacteria as a predictor of mortality.
- Author
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Kara Ali R, Surme S, Balkan II, Salihoglu A, Sahin Ozdemir M, Ozdemir Y, Mete B, Can G, Ar MC, Tabak F, and Saltoglu N
- Subjects
- Adult, Aged, Anti-Bacterial Agents administration & dosage, Disease-Free Survival, Female, Follow-Up Studies, Humans, Male, Middle Aged, Predictive Value of Tests, Retrospective Studies, Survival Rate, Drug Resistance, Bacterial, Febrile Neutropenia blood, Febrile Neutropenia drug therapy, Febrile Neutropenia microbiology, Febrile Neutropenia mortality, Gram-Negative Bacteria classification, Gram-Negative Bacteria isolation & purification, Gram-Negative Bacterial Infections blood, Gram-Negative Bacterial Infections drug therapy, Gram-Negative Bacterial Infections microbiology, Gram-Negative Bacterial Infections mortality, Leukemia, Myeloid, Acute blood, Leukemia, Myeloid, Acute drug therapy, Leukemia, Myeloid, Acute microbiology, Leukemia, Myeloid, Acute mortality
- Abstract
Antimicrobial stewardship is of major importance in patients with febrile neutropenia (FN). In this study, we aimed to investigate the trends in resistance and the relationship with mortality rates in patients with FN. The single-center surveillance data of inpatients with FN and diagnosed as microbiologically confirmed bloodstream infections (BSIs) between 2006 and 2016 were reviewed retrospectively. A total of 950 episodes in 552 patients with BSIs were analyzed. Of whom, 55.9% were male, the median age was 43 years, and 35.6% had acute myeloid leukemia. In total, 1016 microorganisms were isolated from blood cultures. Gram-negatives accounted for 42.4% (n = 403) of the episodes. Among Gram-negatives, Enterobacteriaceae accounted for 346 (86%) (E. coli, n = 197; 34% extended-spectrum β-lactamases (ESBL) producers, and Klebsiella spp., n = 120; 48.3% ESBL producers). Also, 24 (20.0%) of Klebsiella spp. had carbapenemase activity. There were 6 (5.0%) colistin-resistant Klebsiella spp. Thirteen (26.5%) of Pseudomonas spp. and 17 (60.7%) of Acinetobacter spp. had carbapenemase activity. There were 2 (5.6%) colistin-resistant Acinetobacter spp. The 30-day mortality rates were 12.0%, 21.5%, 34.6%, and 29.0% in BSIs due to Gram-positive, Gram-negative bacterial, fungal, and polymicrobial etiology respectively (p = 0.001). BSIs with ESBL-producing (p = 0.001) isolates, carbapenem (p < 0.001), and colistin-resistant isolates (p < 0.001) were associated with increased mortality risk. The tremendous rise in resistance rates among Gram-negatives is dreadfully related to increasing mortality and leads to sharp shifts toward extreme restrictions of unnecessary antibiotic uses. Antimicrobial stewardship in patients with FN requires vigilance and tailoring of treatment upon local surveillance data.
- Published
- 2020
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35. Reducing blood culture contaminations by use of hair nets and face masks.
- Author
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Surme S and Balkan II
- Subjects
- Antisepsis, Hair, Skin, Blood Culture, Masks
- Abstract
We have read the article by Sanders et al. with great interest. We appreciate the authors for their stewardship to decrease blood culture contamination rate. We would like to address the etiological distribution before and after the addition of hair nets and masks in the study. We would expect oral streptococci to decrease proportionally by using masks, but this rate did not decrease (4.7% versus 6.3%). We think that if a control group was formed in which face masks and hair nets were not used during the intervention 2 and 3 phase, similar low contamination rates would have been obtained. Strict hand hygiene, proper use of gloves, proper skin antisepsis, and nonpalpation of the disinfected area are crucial to prevent contamination. In conclusion, skin contamination constitutes a significant proportion of false culture positivity rates and is still a major problem., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2020
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36. Influence of multidrug resistant organisms on the outcome of diabetic foot infection.
- Author
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Saltoglu N, Ergonul O, Tulek N, Yemisen M, Kadanali A, Karagoz G, Batirel A, Ak O, Sonmezer C, Eraksoy H, Cagatay A, Surme S, Nemli SA, Demirdal T, Coskun O, Ozturk D, Ceran N, Pehlivanoglu F, Sengoz G, Aslan T, Akkoyunlu Y, Oncul O, Ay H, Mulazımoglu L, Erturk B, Yilmaz F, Yoruk G, Uzun N, Simsek F, Yildirmak T, Yaşar KK, Sonmezoglu M, Küçükardali Y, Tuna N, Karabay O, Ozgunes N, and Sargın F
- Subjects
- Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Diabetic Foot drug therapy, Diabetic Foot physiopathology, Drug Resistance, Multiple drug effects, Escherichia coli drug effects, Female, Humans, Klebsiella pneumoniae drug effects, Male, Middle Aged, Osteomyelitis drug therapy, Osteomyelitis physiopathology, Patient Outcome Assessment, Patient Readmission statistics & numerical data, Pseudomonas aeruginosa drug effects, Staphylococcus aureus drug effects, Amputation, Surgical statistics & numerical data, Diabetic Foot microbiology, Drug Resistance, Multiple physiology, Osteomyelitis microbiology
- Abstract
Objectives: We described the clinical outcomes of the diabetic patients who had foot infections with multidrug resistant organisms., Methods: We included the patients with diabetic foot infections (DFI) from 19 centers, between May 2011 and December 2015. Infection was defined according to IDSA DFI guidelines. Patients with severe infection, complicated moderate infection were hospitalized. The patients were followed-up for 6 months after discharge., Results: In total, 791 patients with DFI were included, 531(67%) were male, median age was 62 (19-90). Severe infection was diagnosed in 85 (11%) patients. Osteomyelitis was diagnosed in 291(36.8%) patients. 536 microorganisms were isolated, the most common microorganisms were S. aureus (20%), P. aeruginosa (19%) and E. coli (12%). Methicillin resistance (MR) rate among Staphylococcus aureus isolates was 31%. Multidrug resistant bacteria were detected in 21% of P. aeruginosa isolates. ESBL (+) Gram negative bacteria (GNB) was detected in 38% of E. coli and Klebsiella isolates. Sixty three patients (8%) were re-hospitalized. Of the 791 patiens, 127 (16%) had major amputation, and 24 (3%) patients died. In multivariate analysis, significant predictors for fatality were; dialysis (OR: 8.3, CI: 1.82-38.15, p=0.006), isolation of Klebsiella spp. (OR:7.7, CI: 1.24-47.96, p=0.028), and chronic heart failure (OR: 3, CI: 1.01-9.04, p=0.05). MR Staphylococcus was detected in 21% of the rehospitalized patients, as the most common microorganism (p<0.001)., Conclusion: Among rehospitalized patients, methicillin resistant Staphylococcus infections was detected as the most common agent, and Klebsiella spp. infections were found to be significantly associated with fatality., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
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