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Clove oil, cinnamon oil, and five essential oil components (citral, eugenol, geraniol, limonene, and linalool) were tested for growth inhibition of 14 phytopathogenic fungi. Citral completely inhibited the growth of Alternaria alternata, Aspergillus flavus, Curvularia lunata, Fusarium moniliforme, F. pallidoroseum, and Phoma sorghina in paper disc agar diffusion assays. Cinnamon oil, citral, and clove oil as low as 0.01% (vol/vol) inhibited the spore germination of Cercospora arachidicola, Phaeoisariopsis personata, and Puccinia arachidis by >90% in vitro. Limonene and linalool were observed to be the least antifungal against the test fungi and were not used in further studies. Clove oil (1% vol/vol) applied as a foliar spray 10 min before Phaeoisariopsis personata inoculation reduced the severity of late leaf spot of peanut up to 58% when challenge inoculated with 104 conidia ml-1. This treatment was more effective (P = 0.01) than 0.5% (vol/vol) citral, cinnamon oil, or clove oil and 1% (vol/vol) eugenol or geraniol. Seed treatment with the test compounds had no effect on the incidence of crown rot in peanut in Aspergillus niger-infested soil. However, soil amendment with 0.25% (vol/wt) clove oil and cinnamon oil reduced the preemergence rotting by 71 and 67% and postemergence wilting by 58 and 55%, respectively, compared with the nontreated control. These two treatments were more effective (P < 0.01) than geraniol on preemergence rotting, and more effective than citral, eugenol, and geraniol on postemergence wilting. All treatments significantly outperformed the nontreated control but none were as effective as thiram treatment.

Climate change has a number of observed, anticipated, or possible consequences on crop health worldwide. Global change, on the other hand, incorporates a number of drivers of change, including global population increase, natural resource evolution, and supply–demand shifts in markets, from local to global. Global and climate changes interact in their effects on global ecosystems. Identifying and quantifying the impacts of global and climate changes on plant diseases is complex. A number of nonlinear relationships, such as the injury (epidemic)–damage (crop loss) relationship, are superimposed on the interplay among the three summits of the disease triangle (host, pathogen, environment). Work on a range of pathosystems involving rice, peanut, wheat, and coffee has shown the direct linkage and feedback between production situations and crop health. Global and climate changes influence the effects of system components on crop health. The combined effects of global and climate changes on diseases vary from one pathosystem to another within the tetrahedron framework (humans, pathogens, crops, environment) where human beings, from individual farmers to consumers to entire societies, interact with hosts, pathogens, and the environment. This article highlights international phytopathological research addressing the effects of global and climate changes on plant diseases in a range of crops and pathosystems.

Sterility mosaic disease (SMD) caused by Pigeonpea sterility mosaic virus and vectored by the eriophyid mite is a serious disease of pigeonpea in almost all pigeonpea-growing areas. Managing the disease with chemicals such as acaricides is very difficult, non-eco-friendly and costly; hence, host plant resistance is the best strategy implemented to manage this disease. In this context, 28 pigeonpea genotypes identified as resistant from preliminary screening of 976 pigeonpea accessions were evaluated in field at eight different agro-ecological locations in India for the stability of their resistance against SMD during 2007/2008 and 2008/2009. Genotype plus genotype × environment (GGE) analysis partitioned main effects into genotype, environments and G × E interactions and showed significant effects (P < 0.001) for SMD percentage incidence. Environment variance had the greatest effect (76.68 %), indicating the maximum variation in the disease due to the environment. At Bangalore, Dholi and Rahuri locations, all genotypes were susceptible to SMD with mean disease incidence of 71.1, 50.4 and 32.6 % respectively. However, most of the genotypes were resistant at four locations, Akola, Badnapur, Patancheru, and Vamban, and moderately resistant at Coimbatore. The GGE biplot analysis explained about 67.26 % of total variation and identified four genotypes (ICPLs 20094, 20106, 20098, 20115) as the most stable and resistant to SMD. Three genotypes (ICPLs 20096, 20107, 20110) showed moderately stable performance against SMD. These genotypes should be included in pigeonpea breeding programs as additional sources of resistance to SMD.

Botrytis grey mould (BGM), caused by Botrytis cinerea Pers. Ex. Fr., is a destructive foliar disease of chickpea (Cicer arietinum L.) worldwide. Disease management through host-plant resistance is the most effective and economic option to manage this disease. The objective of this study was to identify new sources of resistance to BGM, validate their stability across environments and determine the magnitude of G × E interaction. One hundred and nine chickpea genotypes with moderate levels of resistance (BGM severity ≤5.0 on a 1–9 scale) were selected from the preliminary evaluation of 412 genotypes including germplasm and breeding lines under controlled environmental conditions in 2004–2005 at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India. In order to validate resistance stability, an ‘International Botrytis Grey Mould Nursery’ (IBGMN) was constituted with 25 genotypes and tested in multi-environments for BGM resistance at two locations (Gurdaspur and Pantnagar) in India for 4 years and two locations (Tarahara and Rampur) in Nepal for 3 years. Additive main effects and multiplicative interaction (AMMI) analysis showed significant genotype (G), environment (E) and G × E interaction (p < 0.0001) with largest contribution by environment (47.36%). The first two principal component axes were significant, and contributed 48.21% to the total G × E interaction. The AMMI biplot analysis allowed the selection of five genotypes ICCV 96859, ICCV 96853, ICCV 05604, ICCV 96852 and ICCV 05605 with low BGM severity (between 3.7 and 4.7 on 1–9 scale) and moderate stability. Genotype ICCV 96859 having least disease severity and moderate stability could be highlighted and exploited in chickpea resistance breeding programmes

In chickpea, bottlenecks associated with its domestication and low use of germplasm in improvement programs have resulted in a narrow genetic base and its vulnerability to abiotic and biotic stresses. The core and mini core collections, representing diversity in the entire collection, have been advocated for enhanced utilization of germplasm in crop improvement. A chickpea mini core (211 accessions) was evaluated for agronomic traits from 2000 and 2001 to 2003 and 2004 in post-rainy seasons under irrigated and non-irrigated conditions. The published information on the response of chickpea mini core accessions to stress revealed that 40 accessions had resistance to abiotic stress, 31 to biotic stress, and 24 had no resistance to either of the stresses. The abiotic and biotic stress resistant groups had six accessions in common. The mini core collection accessions were also a part of composite collection accessions in chickpea, which was genotyped using 48 simple sequence repeats (SSRs; BMC Plant Biol. 8:106, 2008). The agronomic evaluation, stress response, and molecular profiling data on 93 accessions, including four controls, were used to identify genetically diverse germplasm with agronomically beneficial traits. A number of genetically diverse accessions possessing agronomically beneficial traits, such as ICC 440, 637, 1098, 3325, 3362, 4872, 7441, 8621, 9586, 10399, 12307, 14402, 15680, and 15686, which meet breeders’ needs, have been identified for use in breeding and genetics to map genomic regions associated with beneficial traits and as source materials for developing high yielding and widely adapted chickpea cultivars with multiple resistance to abiotic and biotic stress.

Fusarium wilt (FW) and Ascochyta blight (AB) are two important diseases of chickpea which cause 100 % yield losses under favorable conditions. With an objective to validate and/or to identify novel quantitative trait loci (QTLs) for resistance to race 1 of FW caused by Fusarium oxysporum f. sp. ciceris and AB caused by Ascochyta rabiei in chickpea, two new mapping populations (F2:3) namely ‘C 214’ (FW susceptible) × ‘WR 315’ (FW resistant) and ‘C 214’ (AB susceptible) × ‘ILC 3279’ (AB resistant) were developed. After screening 371 SSR markers on parental lines and genotyping the mapping populations with polymorphic markers, two new genetic maps comprising 57 (C 214 × WR 315) and 58 (C 214 × ILC 3279) loci were developed. Analysis of genotyping data together with phenotyping data collected on mapping population for resistance to FW in field conditions identified two novel QTLs which explained 10.4–18.8 % of phenotypic variation. Similarly, analysis of phenotyping data for resistance to seedling resistance and adult plant resistance for AB under controlled and field conditions together with genotyping data identified a total of 6 QTLs explaining up to 31.9 % of phenotypic variation. One major QTL, explaining 31.9 % phenotypic variation for AB resistance was identified in both field and controlled conditions and was also reported from different resistant lines in many earlier studies. This major QTL for AB resistance and two novel QTLs identified for FW resistance are the most promising QTLs for molecular breeding separately or pyramiding for resistance to FW and AB for chickpea improvement.

Ascochyta blight (AB) caused by Ascochyta rabei (Pass.) Labr. is one of the most important constraints that limits the productivity of chickpea (Cicer arietinum L.). The absence of high levels of stable resistant sources to the pathogen has necessitated the continued search and identification of new sources of resistance. The main aim of this work was to identify new sources of resistance to AB and validate their stability across multi-environments. A collection of 424 elite chickpea genotypes were evaluated for AB resistance under controlled environmental conditions in 2005–2006 at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India. Fifty-one genotypes with AB severity ≤3.0 (based on the 1–9 scale) were selected for a second round of evaluation in 2006–2007 at ICRISAT. Based on the results obtained during both years, an Ascochyta Blight Nursery (ABN) was established to evaluate the selected 29 chickpea genotypes, including 4 germplasm lines, 24 breeding lines and a highly susceptible line. The nursery was evaluated at 3 locations (Almora, Dhaulakuan and Ludhiana) in India over three crop seasons (2007–2008, 2008–2009 and 2009–2010) and under controlled environment conditions at ICRISAT to further confirm the stable performance of these genotypes. Analysis of variance revealed highly significant effects of year, location (year), genotype and genotype × location (year) interaction. The genotype and genotype × environment (GGE) biplot analyses of multi-environment data showed that resistance of five genotypes (EC 516934, ICCV 04537, ICCV 98818, EC 516850 and EC 516971) had mean disease severity ≤3.0 on the 1–9 scale and the reactions were consistent across the environments. Genotype EC 516934 was found resistant to AB at the seedling stage in the controlled environment at ICRISAT. The remaining genotypes showed moderately resistant reaction (3.0–5.0) to AB under controlled environment conditions. A significant positive correlation was found between the performance of the genotypes under controlled environment and field screening conditions (r = 0.70; P

Botrytis grey mould (BGM), caused by the fungus Botrytis cinerea Pers. ex Fr., is an important disease of chickpea causing economic losses across the world in chickpea-growing regions. There are no available resistance sources in cultivated chickpea against this disease. Cicer echinospermum and C. reticulatum, the only two compatible annual wild species, have been reported to have resistance to BGM. Hence, interspecific populations were developed with susceptible cultivars as female parents and C. echinospermum accession IG 73 074 and C. reticulatum accession IG 72 937 as the pollen donors to transfer and assess the nature of genetic control for BGM. Screening the progeny indicated that resistance to BGM was controlled by a single additive gene/allele (bgmr1cr and bgmr1ce), which can be introgressed through a backcross breeding programme.

A survey was conducted in 2010-2011 rabi cropping season to obtain information on the distribution and incidence of chickpea diseases in respect to soil type, cultivar used, seed treatment in central and southern parts of India. Local cultivars predominated in most farmers’ fields (25% - 48%). 63% of the farmers were practices seed treatment with fungicide. Dry root rot and collar rot diseases were found at all of the sites and incidence ranged from 8.9% - 10.3% and 7.1% - 10.5% respectively irrespective of cultivar type and locations. Incidence of wilt and black root rot disease ranged from 9.7% - 13.8% and 6.6% - 7.4% respectively. Black root rot disease was found in Andhra Pradesh and Karnataka states only. The result indicated that dry root rot and collar rot is currently highly distributed in all surveyed chickpea growing areas of central and southern parts of India. Therefore, possible management options are vital to alleviate the problem.

Erratic rainfalls and rise in temperature have become more frequent under the changing scenario of climate particularly in semiarid tropics. As a consequence of it, a drastic shift of chickpea diseases have been recorded throughout the major chickpea growing regions in India and elsewhere. Dry root rot (DRR) caused by Rhizoctonia bataticola (Taub.) Butler [Pycnidial stage: Macrophomina phaseolina (Tassi) Goid] was found as a potentially emerging constraint to chickpea production than wilt (Fusarium oxysporum f. sp. ciceris). Increasing incidence of DRR indicate strong influence of climate change variables such as temperature and moisture on the development of disease. The present study therefore was conducted to quantify the role of temperature and soil moisture associated with infection, colonization and development of DRR under controlled environment. The DRR incidence was significantly affected by high temperature and soil moisture deficit. Out of five temperature regimes (15?C, 20?C, 25?C, 30?C and 35?C) and four moisture levels (40%, 60%, 80% and 100%), a combination of high temperature (35?C) and soil moisture content (60%) predisposes chickpea to DRR. The study clearly demonstrates that high temperature coupled with soil moisture deficit is the climate change variables predisposing chickpea to R. bataticola infection, colonization and development.

Blight symptoms on pigeonpea were observed in alarming proportion since 2009 onwards in Andhra Pradesh state of India. Alternaria blight infected pigeonpea plants were collected from Andhra Pradesh state of India to isolate and characterize the pathogen. The isolate proved pathogenic on pigeonpea cultivar ICPL 87119. Genetic characteristics were analyzed based on the sequence of the rDNA-internal transcribed spacer (ITS) region. The phylogenetic tree based on rDNA-ITS analysis showed that the Alternaria alternata causing Alternaria blight in pigeonpea is very distinct from the other Alternaria isolate reported from different host. This is the first report of molecular identification of Alternaria alternata causing Alternaria blight in pigeonpea.

Vascular wilt caused by Fusarium oxysporum f. sp. ciceris (Foc) is a serious disease of chickpea (Cicer arietinum L.) accounting for approximately 10–15% annual crop loss. The fungus invades the plant via roots, colonizes the xylem vessels and prevents the upward translocation of water and nutrients. Infection is initiated by conidia that invade the host tissue often by penetration of intact epidermal cells. Here, we report the characterization of the transcriptome of Foc sequenced using Illumina Hiseq technology during its conidial germination at different time points. Genome-wide expression profiling revealed that genes linked to fungal development are transcribed in successive ways. Analysis showed that Foc have large sets of germination-related genes and families of genes encoding secreted effectors, cell wall/pectin-degrading enzymes, metabolism related enzymes, transporters and peptidases. We found that metabolism related enzymes are up-regulated at early time point whereas most transporters and secondary metabolites important for tissue colonization and pathogenicity are up-regulated later as evident from the qRT-PCR. The study demonstrated that early conidial germination in Foc is accompanied by rapid shifts in gene expression that prepare the fungus for germ tube outgrowth, host cell invasion and pathogenesis. This work lays the foundation for facilitating further research towards understanding this host-pathogen interaction.

Molecular markers are the most powerful genomic tools to increase the efficiency and precision of breeding practices for crop improvement. Progress in the development of genomic resources in the leading legume crops of the semi-arid tropics (SAT), namely, chickpea (Cicer arietinum), pigeonpea (Cajanus cajan) and groundnut (Arachis hypogaea), as compared to other crop species like cereals, has been very slow. With the advances in next-generation sequencing (NGS) and high-throughput (HTP) genotyping methods, there is a shift in development of genomic resources including molecular markers in these crops. For instance, 2,000 to 3,000 novel simple sequence repeats (SSR) markers have been developed each for chickpea, pigeonpea and groundnut. Based on Sanger, 454/FLX and Illumina transcript reads, transcriptome assemblies have been developed for chickpea (44,845 transcript assembly contigs, or TACs) and pigeonpea (21,434 TACs). Illumina sequencing of some parental genotypes of mapping populations has resulted in the development of 120 million reads for chickpea and 128.9 million reads for pigeonpea. Alignment of these Illumina reads with respective transcriptome assemblies have provided more than 10,000 SNPs each in chickpea and pigeonpea. A variety of SNP genotyping platforms including GoldenGate, VeraCode and Competitive Allele Specific PCR (KASPar) assays have been developed in chickpea and pigeonpea. By using above resources, the first-generation or comprehensive genetic maps have been developed in the three legume speciesmentioned above. Analysis of phenotyping data together with genotyping data has provided candidate markers for drought-tolerance-related root traits in chickpea, resistance to foliar diseases in groundnut and sterility mosaic disease (SMD) and fertility restoration in pigeonpea. Together with these traitassociated markers along with those already available, molecular breeding programmes have been initiated for enhancing drought tolerance, resistance to fusarium wilt and ascochyta blight in chickpea and resistance to foliar diseases in groundnut. These trait-associated robust markers along with other genomic resources including genetic maps and genomic resources will certainly accelerate crop improvement programmes in the SAT legumes.

Chickpea wilt incited by Fusarium oxysporum f. sp. ciceris is one of the most important constraints to chickpea production worldwide and best managed through host plant resistance. The aim of this work was to find new sources of resistance to wilt disease and validate their stability across different environments. One-hundred and twenty three lines with wilt incidence

Fusarium wilt is an important disease of pigeonpea [Cajanus cajan (L.) Millsp.] and it can cause severe yield losses. Chemical control of this disease is difficult and expensive; therefore, cultivation of resistant varieties/hybrids is the most efficient strategy for enhancing the production. In the present study, by using a wilt susceptible cytoplasmic-nuclear male-sterile line and four wilt resistant fertility restorers, one dominant and one recessive gene with dominant suppressive epistatic effects were found responsible for controlling resistance to Fusarium wilt. Considering the annual losses and wide spread nature of wilt diseases in pigeonpea, it is imperative that all the inbred and hybrid cultivars have high level of resistance to this disease. The presence of dominant gene for resistance will increase the efficiency of breeding wilt resistant cultivars because it will yield greater proportion of resistant genotypes in segregating generations. In hybrid breeding also, the presence of dominant gene for wilt resistance will be an advantage. The transfer of this gene in female hybrid parents will ease the breeding of wilt resistant hybrids because this will allow the use of both wilt resistant as well as susceptible restorers in generating wilt resistant hybrid combinations.

Fusarium wilt (FW) and Sterility mosaic disease (SMD) are important biotic constraints to pigeonpea production worldwide. Host plant resistance is the most durable and economical way to manage these diseases. A pigeonpea mini-core collection consisting of 146 germplasm accessions developed from a core collection of 1290 accessions from 53 countries was evaluated to identify sources of resistance to FW and SMD under artificial field epiphytotic conditions during 2007–08 and 2008–09 crop seasons. Resistant sources identified in the field were confirmed in the greenhouse using a root dip screening technique for FW and a leaf stapling technique for SMD. Six accessions (originated from India and Italy were found resistant to FW (

Phytophthora blight (PB), caused by Phytophthora drechsleri f. sp. cajani, is reoccurring as an economically important disease of pigeonpea (Cajanus cajan), especially when excessive rains fall within a short span of time and hot and humid weather persists during the crop season. A few years after the initial reviews of Kannaiyan et al. (1984), the disease was coming to halt. Despite earlier investigations on pathological and physiological characteristics of P. drechsleri f. sp. cajani, the nature of infection process and genetic basis of pathogen variability have not been clearly established. Therefore, information on the biology and survival of the pathogen is needed to devise effective management strategies. Attempts have been made to develop green-house and field screening techniques since three decades ago for identification of host plant resistance. However, only few pigeonpea germplasm and breeding lines belonging to cultivated and wild Cajanus spp. were found tolerant to PB. The recent frequent recurrence of PB epidemics in the major pigeonpea growing areas prioritized the search for higher levels of disease resistance. There is a need to study the biology of the pathogen, epidemiology of the disease and refinement of the resistance screening techniques and develop integrated disease management technology for the disease. In this review, the symptomatology of the disease, biology of pathogen including its variability, epidemiology, sources of resistance, other management options and available information on biochemical and genetic basis of disease resistance have been updated and discussed with the identification of future research priorities.

Sterility mosaic disease (SMD), considered as the “green plague of pigeonpea” and caused by pigeonpea sterility mosaic virus (PPSMV) is one of the major biotic factors, which leads to heavy yield losses and hence poses a big challenge for pigeonpea production in the Indian subcontinent. Variability in the sterility mosaic pathogen revealed the occurrence of five different isolates in India. Among them, three distinct SMD isolates have been characterized, viz., Patancheru, Bangalore and Coimbatore. Molecular tools offer a viable option to tackle these biotic stresses via identification of the genomic regions associated with the trait such as SMD resistance. With an aim of identifying the gene(s)/QTLs linked with SMD resistance, two F 2 populations, i.e. ICP 8863 × ICPL 20097 (segregating for Patancheru SMD isolate) and TTB 7 × ICP 7035 (segregating for both Patancheru and Bangalore SMD isolates) were developed and F 2:3 families were phenotyped for resistance to respective isolate(s) of SMD. After screening over 3000 SSR markers on parental genotypes of each mapping population, intra-specific genetic maps comprising of 11 linkage groups and 120 and 78 SSR loci were developed for ICP 8863 × ICPL 20097 and TTB 7 × ICP 7035 populations, respectively. Composite interval mapping (CIM) based QTL analysis by using genetic mapping and phenotyping data provided four QTLs for Patancheru SMD isolate and two QTLs for Bangalore SMD isolate. Identification of different QTLs for resistance to Patancheru and Bangalore SMD isolates is an indication of involvement of different genes conferring the resistance to these two SMD isolates. One QTL namely qSMD4 identified within an interval of 2.8 cM on LG 7 explaining 24.72% of phenotypic variance, once it is validated in other genetic background, seems to be a promising QTL for use in marker assisted selection. In summary, this is the first study on development of intra-specific genetic maps and identification of QTLs for SMD resistance in pigeonpea.

A total of 137 actinomycetes cultures, isolated from 25 different herbal vermicomposts, were characterized for their antagonistic potential against Fusarium oxysporum f. sp. ciceri (FOC) by dual-culture assay. Of the isolates, five most promising FOC antagonistic isolates (CAI-24, CAI-121, CAI-127, KAI-32 and KAI-90) were characterized for the production of siderophore, cellulase, protease, hydrocyanic acid (HCN), indole acetic acid (IAA) and antagonistic potential against Rhizoctonia bataticola, which causes dry root rot in chickpea (three strains viz. RB-6, RB-24 and RB-115) and sorghum (one strain). All of the five FOC antagonistic isolates produced siderophore and HCN, four of them (except KAI-90) produced IAA, KAI-32 and KAI-90 produced cellulase and CAI-24 and CAI-127 produced protease. In the dual-culture assay, three of the isolates, CAI-24, KAI-32 and KAI-90, also inhibited all three strains of R. bataticola in chickpea, while two of them (KAI-32 and KAI-90) inhibited the tested strain in sorghum. When the FOC antagonistic isolates were evaluated further for their antagonistic potential in the greenhouse and wilt-sick field conditions on chickpea, 45–76% and 4–19% reduction of disease incidence were observed, respectively compared to the control. The sequences of 16S rDNA gene of the isolates CAI-24, CAI-121, CAI-127, KAI-32 and KAI-90 were matched with Streptomyces tsusimaensis, Streptomyces caviscabies, Streptomyces setonii, Streptomyces africanus and an identified species of Streptomyces, respectively using the BLAST searching. This study indicated that the selected actinomycete isolates have the potential for biological control of Fusarium wilt disease in chickpea.

Botrytis grey mould (BGM) caused by Botrytis cinerea Pers. ex. Fr. is the second most important foliar disease of chickpea (Cicer arietinum L.) after ascochyta blight. An intraspecific linkage map of chickpea consisting of 144 markers assigned on 11 linkage groups was constructed from recombinant inbred lines (RILs) of a cross that involved a moderately resistant kabuli cultivar ICCV 2 and a highly susceptible desi cultivar JG 62. The length of the map obtained was 442. 8 cM with an average interval length of 3. 3 cM. Three quantitative trait loci (QTL) which together accounted for 43.6% of the variation for BGM resistance were identified and mapped on two linkage groups. QTL1 explained about 12.8% of the phenotypic variation for BGM resistance and was mapped on LG 6A. It was found tightly linked to markers SA14 and TS71rts36r at a LOD score of 3.7. QTL2 and QTL3 accounted for 9.5 and 48% of the phenotypic variation for BGM resistance, respectively, and were mapped on LG 3. QTL 2 was identified at LOD 2.7 and flanked by markers TA25 and TA144, positioned at 1 cM away from marker TA25. QTL3 was a strong QTL detected at LOD 17. 7 and was flanked by TA159 at 12 cM distance on one side and TA118 at 4 cM distance on the other side. This is the first report on mapping of QTL for BGM resistance in chickpea. After proper validation, these QTL will be useful in marker-assisted pyramiding of BGM resistance in chickpea. © 2011 Springer Science+Business Media B.V.

Effective controlled-environment and field screening techniques were developed and refined to identify resistance to Ascochyta blight (AB), caused by Ascochyta rabiei (Pass.) Labr. in chickpea. A controlled environment plant growth room facility developed for AB evaluation at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India was modified to evaluate chickpea genotypes for resistance to AB. Controlled environment screening techniques, such as a seedling screening technique using 10-day-old seedlings and cut-twig screening techniques using excised twigs (10–15 cm long) were developed. Components of the screening techniques were optimized in the controlled environment-plant growth room. The controlled environment screening techniques were found to be rapid, reliable and reproducible and a positive correlation was found between the seedling and cut-twig screening techniques (r = 0.94). The cut-twig screening technique was quicker than the seedling screening technique and is particularly useful in screening segregating breeding lines derived from wild Cicer spp. Results of the controlled environment screening techniques were compared with results of field screening trials carried out at Dhaulakuan and Ludhiana in India, where the pathogen is endemic. A significant positive correlation was found between results from the controlled environment and field screening techniques (r = 0.88). Using these resistance screening techniques, 150 elite chickpea breeding lines were evaluated and 29 lines with high and stable resistance to AB were identified.

The impacts of climate change on ecosystem services are complex in the sense that effective prediction requires consideration of a wide range of factors. Useful analysis of climate-change impacts on crops and native plant systems will often require consideration of the wide array of other biota that interact with plants, including plant diseases, animal herbivores, and weeds. We present a framework for analysis of complexity in climate-change effects mediated by plant disease. This framework can support evaluation of the level of model complexity likely to be required for analysing climate-change impacts mediated by disease. Our analysis incorporates consideration of the following set of questions for a particular host, pathogen, host–pathogen combination, or geographic region. 1. Are multiple biological interactions important? 2. Are there environmental thresholds for population responses? 3. Are there indirect effects of global change factors on disease development? 4. Are spatial components of epidemic processes affected by climate? 5. Are there feedback loops for management? 6. Are networks for intervention technologies slower than epidemic networks? 7. Are there effects of plant disease on multiple ecosystem services? 8. Are there feedback loops from plant disease to climate change? Evaluation of these questions will help in gauging system complexity, as illustrated for fusarium head blight and potato late blight. In practice, it may be necessary to expand models to include more components, identify those components that are the most important, and synthesize such models to include the optimal level of complexity for planning and research prioritization.

Ascochyta blight (AB, Ascochyta rabiei (Pass.) Lab.) is one of the most important foliar disease of chickpea (Cicer arietinum L.), globally. Chickpea is attacked by AB at any growth stage in cool and humid weather depending on the inoculum availability. However, the disease epidemics are most prominent during the flowering and podding growth stages. The main objective of this study was to determine the effect of growth stages of chickpea on the genetic resistance of AB and use this information in a resistance breeding program. Two susceptible and two moderately resistant chickpea cultivars were spray inoculated at seedling (GS1), post-seedling (GS2), vegetative (GS3), flowering (GS4) and podding (GS5) growth stages with A. rabiei conidial suspension under controlled environment conditions. Irrespective of crop cultivars the incubation period (IP) was shorter in GS1, GS4 and GS5 and was significantly extended in GS2 and GS3. Symptom development was delayed significantly in moderately resistant cultivars. The AB severity 10 days after inoculation ranged between 7 and 9 on susceptible cultivars and 3 and 5 on moderately resistant cultivars. Further the correlation coefficient of disease severity between GS1, GS4 and GS5 was highly significant (r = 0.95) indicating that, evaluation for resistance to AB can be done at GS 1 (seedling stage), and or GS4 (flowering stage) to GS5 (podding stage) growth stages of chickpea. This supports the evaluation for AB resistance using 10-day-old-seedlings in controlled environment at ICRISAT and adult plant field screening at hot-spot locations in Dhaulakuan and Ludhiana in India.

Ascochyta blight (AB), caused by Ascochyta rabiei (Pass.) Labr. (anamorph), is the most damaging disease of chickpea (Cicer arietinum L.) and is a serious biotic stress constraint for chickpea production. To understand the molecular diversity in A. rabiei populations of India, a total of 64 isolates collected from AB-infected chickpea plants from different agroclimatic regions in the North Western Plain Zone (NWPZ) of India were analyzed with 11 AFLP (amplified fragment length polymorphism) and 20 SSR (simple sequence repeat) markers. A total of 9 polymorphic AFLP primer pairs provided a total of 317 fragments, of which 130 were polymorphic and showed an average PIC value 0.28. Of the SSR markers, 12 showed polymorphism and provided a total of 29 alleles with an average PIC value 0.35. To the best of our knowledge, this is the first report on a comparison of AFLP and SSR diversity estimates in A. rabiei populations. The dendrogram developed based on AFLP and SSR data separately, as well as on the combined marker dataset, grouped the majority of AB isolates as per geographic regions. Model based population structure analysis revealed four distinct populations with varying levels of ancestral admixtures among 64 isolates studied. Interestingly, several AFLP primer combinations and SSR markers showed the locus/allele specific to AB isolates of certain regions, e.g., Hisar, Sriganganagar, Gurdaspur, and Sundarnagar. Genetic variability present in AB isolates of the NWPZ of India suggests the continuous monitoring of changes in A. rabiei population to anticipate the breakdown of AB resistance in chickpea cultivars grown in India.

Botrytis grey mould (BGM) is the major constraint to chickpea production in Bangladesh and is considered primarily responsible for that country's recent drastic decrease in chickpea production. There is no substantial host plant resistance to BGM in current chickpea cultivars, but component studies have developed various agronomic options to manage the disease. These include reduced seed rate, delayed sowing and thinning of plants to ensure an open canopy, and need-based foliar application of fungicide. These components were combined with other agronomic requirements for the target region, such as application of phosphate fertilizer, pest management measures against chickpea pod borer, and fungicidal seed treatment against collar rot. The resultant integrated crop management (ICM) package was compared with normal farmer practice (FP) for chickpea cultivation in farmer-managed, operational scale plots at 100 locations across five districts in western Bangladesh in the 2002–2003 and 2003–2004 seasons. Grain yields in ICM plots were generally 15–50% higher than in FP in both seasons. Conduct of these on-farm evaluations in two additional districts in 2004–2005 gave similar results. In 2004–2005, 505 farmer-managed demonstrations were conducted in the five original districts, giving a 5–104% yield advantage (district means) of ICM over FP. In 2005–2006, 642 demonstrations were conducted across the eight districts giving district-wise yield advantages of 27–70%. Effective implementation of BGM management practices by participating farmers demonstrated that remunerative and reliable chickpea yields could be obtained in this BGM-prone environment. The ICM strategy evolved has relevance to other chickpea growing regions prone to BGM in South Asia, Australia and the Americas. Studies are now required on the adoption of components of the ICM package, and the underlying reasons, to identify any adoption constraints and thus guide further promotion of chickpea cultivation.

Ascochyta blight (AB) caused by Ascochyta rabiei, is globally the most important foliar disease that limits the productivity of chickpea (Cicer arietinum L.). An intraspecific linkage map of cultivated chickpea was constructed using an F2 population derived from a cross between an AB susceptible parent ICC 4991 (Pb 7) and an AB resistant parent ICCV 04516. The resultant map consisted of 82 simple sequence repeat (SSR) markers and 2 expressed sequence tag (EST) markers covering 10 linkage groups, spanning a distance of 724.4 cM with an average marker density of 1 marker per 8.6 cM. Three quantitative trait loci (QTLs) were identified that contributed to resistance to an Indian isolate of AB, based on the seedling and adult plant reaction. QTL1 was mapped to LG3 linked to marker TR58 and explained 18.6% of the phenotypic variance (R2) for AB resistance at the adult plant stage. QTL2 and QTL3 were both mapped to LG4 close to four SSR markers and accounted for 7.7% and 9.3%, respectively, of the total phenotypic variance for AB resistance at seedling stage. The SSR markers which flanked the AB QTLs were validated in a half-sib population derived from the same resistant parent ICCV 04516. Markers TA146 and TR20, linked to QTL2 were shown to be significantly associated with AB resistance at the seedling stage in this half-sib population. The markers linked to these QTLs can be utilized in marker-assisted breeding for AB resistance in chickpea.

Ascochyta blight caused by Ascochyta rabiei, is the most destructive disease in many chickpea growing countries. Disease development varies with the growth stage and host resistance. Hence, disease development was studied in cvs ICCX 810800 (resistant), ICCV 90201 (moderately resistant), C 235 (moderately susceptible), ICCV 96029 and Pb 7 (susceptible) under controlled environment (ICRISAT, Patencheru) and field conditions (Dhaulakuan, Himachal Pradesh) at seedling, post-seedling, vegetative, flowering and podding stages. Under controlled environment, the incubation period and terminal disease reaction (TDR) did not vary significantly at different growth stages against virulent isolate AB 4. Cultivars ICCX 810800, ICCV 90201 and C 235 showed a significantly longer incubation period than the susceptible cv. Pb 7. Cultivar ICCX 810800 showed slow disease progress and the least TDR. Field experiments were conducted during the 2003–2004 and 2004–2005 growing seasons. During 2003–2004, TDR was higher in plants inoculated at podding and the flowering stage and the lowest disease reaction was recorded in ICCX 810800. A severe epidemic during 2004–2005 was attributed to the favourable temperature, humidity and well distributed high rainfall. TDR did not differ significantly at any of the growth stages in susceptible cvs ICCV 96029 and Pb 7. With respect to seeding date and cultivar, the highest yield was recorded in the early-sown crop (1,276.7 kg ha−1) and in ICCV 90201 (1,799.3 kg ha−1), respectively. The yields were greatly reduced in all the cultivars during 2004–2005 and the highest yield was recorded in ICCX 810800 (524.7 kg ha−1). Integrated disease management using resistant cultivars, optimum sowing period and foliar application of fungicides will improve chickpea production. The experiment under controlled environment and field conditions (during the epidemic year) showed a similar disease development.

Background Soil-borne fungi of the Fusarium oxysporum species complex cause devastating wilt disease on many crops including legumes that supply human dietary protein needs across many parts of the globe. We present and compare draft genome assemblies for three legume-infecting formae speciales (ff. spp.): F. oxysporum f. sp. ciceris (Foc-38-1) and f. sp. pisi (Fop-37622), significant pathogens of chickpea and pea respectively, the world’s second and third most important grain legumes, and lastly f. sp. medicaginis (Fom-5190a) for which we developed a model legume pathosystem utilising Medicago truncatula. Results Focusing on the identification of pathogenicity gene content, we leveraged the reference genomes of Fusarium pathogens F. oxysporum f. sp. lycopersici (tomato-infecting) and F. solani (pea-infecting) and their well-characterised core and dispensable chromosomes to predict genomic organisation in the newly sequenced legume-infecting isolates. Dispensable chromosomes are not essential for growth and in Fusarium species are known to be enriched in host-specificity and pathogenicity-associated genes. Comparative genomics of the publicly available Fusarium species revealed differential patterns of sequence conservation across F. oxysporum formae speciales, with legume-pathogenic formae speciales not exhibiting greater sequence conservation between them relative to non-legume-infecting formae speciales, possibly indicating the lack of a common ancestral source for legume pathogenicity. Combining predicted dispensable gene content with in planta expression in the model legume-infecting isolate, we identified small conserved regions and candidate effectors, four of which shared greatest similarity to proteins from another legume-infecting ff. spp. Conclusions We demonstrate that distinction of core and potential dispensable genomic regions of novel F. oxysporum genomes is an effective tool to facilitate effector discovery and the identification of gene content possibly linked to host specificity. While the legume-infecting isolates didn’t share large genomic regions of pathogenicity-related content, smaller regions and candidate effector proteins were highly conserved, suggesting that they may play specific roles in inducing disease on legume hosts. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2486-8) contains supplementary material, which is available to authorized users.

Pande, S., Kishore, G. K., Upadhyaya, H. D., and Rao, J. N. 2006. Identification of sources of multiple disease resistance in mini-core collection of chickpea. Plant Dis. 90:1214-1218. Host plant resistance is the major component in the management of fungal diseases in chickpea (Cicer arietinum). We screened a chickpea mini-core collection composed of 211 germ plasm accessions representing the diversity of the global chickpea germ plasm collection of 16,991, maintained at the International Crops Research Institute for the Semi-Arid Tropics to identify sources of multiple disease resistance. The accessions were screened for resistance against Ascochyta blight (Ascochyta rabiei), Botrytis gray mold (Botrytis cinerea), Fusarium wilt (Fusarium oxysporum f. sp. ciceris), and dry root rot (Rhizoctonia bataticola) under a controlled environment. High levels of resistance were observed to Fusarium wilt (FW), where 21 accessions were asymptomatic and 25 resistant. In all, 3, 55, and 6 accessions were moderately resistant to Ascochyta blight (AB), Botrytis gray mold (BGM), and dry root rot (DRR) respectively. ICC 11284 was the only accession moderately resistant to both AB and BGM. Combined resistance also was identified for DRR and FW in 4 accessions, and for BGM and FW in 11 accessions. Through this study, chickpea germ plasm accessions were identified that possess high levels of resistance to more than one fungal disease and would be useful in chickpea multiple disease resistance breeding programs.

Three hundred and ninety-three groundnut-associated bacterial strains, applied both as seed treatment and soil amendment, were evaluated for control of stem rot disease (caused by Sclerotium rolfsii) of groundnut in a controlled environment. Twelve strains significantly (P=0.01) reduced the incidence of stem, rot of which groundnut seed endophytes Pseudomonas aeruginosa GSE 18 and GSE 19 reduced the seedling mortality by 54% and 58%, compared to the control. In dual cultures, the 12 biocontrol strains reduced the mycelial growth of S. rolfsii by 32%–74% as compared to the control. Cell- free culture filtrates of P. aeruginosa GSE 18 and GSE 19 inhibited the activity in vitro of the cell wall-degrading enzymes (CWDE) polygalacturonase and cellulase by S. rolfsii up to a maximum of 55% and 50%, respectively, when measured 6 days after inoculation. Pseudomonas aeruginosa GSE 18 and GSE 19 with a known tolerance to thiram, a commonly used seed dressing fungicide, suppressed the growth of S. rolfsii, inhibited the activity of CWDE, and reduced the incidence of stem rot, suggesting the usefulness of these biocontrol strains as components in the integrated management of groundnut stem rot.

Kishore, G. K., Pande, S., and Podile, A. R. 2005. Biological control of late leaf spot of peanut (Arachis hypogaea) with chitinolytic bacteria. Phytopathology 95:1157-1165. Late leaf spot (LLS), caused by Phaeoisariopsis personata, is a foliar disease of groundnut or peanut (Arachis hypogaea) with high economic and global importance. Antifungal and chitinolytic Bacillus circulans GRS 243 and Serratia marcescens GPS 5, selected among a collection of 393 peanut-associated bacteria, were applied as a prophylactic foliar spray and tested for control of LLS. Chitin-supplemented application of B. circulans GRS 243 and S. marcescens GPS 5 resulted in improved biological control of LLS disease. Supplementation of bacterial cells with 1% (wt/vol) colloidal chitin reduced lesion frequency by 60% compared with application of bacterial cells alone, in the greenhouse. Chitinsupplemented application of GRS 243 and GPS 5 also resulted in improved and stable control of LLS in a repeated field experiment and increased the pod yields by 62 and 75%, respectively, compared with the control. Chitin-supplemented application of GPS 5 was tested in six onfarm trials, and the increase in pod yields was up to 48% in kharif (rainy season). A 55-kDa chitinase was purified from the cell-free culture filtrate of GPS 5 by affinity chromatography and gel filtration. Purified chitinase of S. marcescens GPS 5 (specific activity 120 units) inhibited the in vitro germination of P. personata conidia, lysed the conidia, and effectively controlled LLS in greenhouse tests, indicating the importance of chitinolysis in biological control of LLS disease by GPS 5.

Late leaf spot (LLS, Phaeoisariopsis personata) and rust (Puccinia arachidis) are the two major biotic constraints of groundnut (Arachis hypogaea L.) of global importance. To identify economic and eco-friendly disease management options, we evaluated extracts of 38 plant spp. of 23 families, for their antifungal activity. Aqueous leaf extracts (20%, w/v) of Prosopis juliflora and Lycopersicon esculentum completely inhibited the in vitro germination of P. personata and P. arachidis, and extracts of Achras sapota, Cyamposis tetragonolobus, Piper betle and Tagetus patula were inhibitory by >95%. In the greenhouse, the severity of LLS and rust corresponded with the time interval between the foliar application of leaf extract and fungal inoculum. Extract of P. juliflora (2%, w/v) in simultaneous application reduced the lesion frequency of LLS and rust by ∼75%, and 35.7% and 50.7% in a prophylactic spray of 96 h before the pathogen inoculation. The extract had no effect on the phenolic content of groun...

Cultural, morphological and pathogenic variation in Indian isolates of Ascochyta rabiei, the causal agent of blight of chickpea, was investigated. Fungal isolates representative of seven agroclimatic regions in north western plain zones (NWPZ) of India showed variation in colony colour as mouse gray with green hue, light mouse gray with slate gray centre and gray with dark brown centre, when grown on chickpea dextrose agar (CDA). Conidiomatal color of the isolates varied from brown to slate gray and black. The number of conidiomata and conidia formed on CDA ranged from 49.7 to 90.7 and , respectively. The size of conidiomata and conidia of A. rabiei isolates varied from , and from , respectively. Fourteen A. rabiei isolates from the seven agroclimatic regions of NWPZ were evaluated for their virulence on 180 chickpea genotypes in controlled environment. Cluster analysis based on the disease rating on a 1-9 scale indicated higher similarity coefficient (> 0.65) between isolates from different agroecological regions, while few isolates from the same region had less similarity. The 14 isolates were grouped into eight pathotypes at > 0.5 similarity coefficient. Sixteen genotypes were identified as probable differentials to distinguish A. rabiei isolates.

Fifteen groundnut-associated bacterial isolates that inhibited by > 90% the in vitro conidial germination of Phaeoisariopsis personata, causal agent of late leaf spot disease of groundnut, were applied as a prophylactic spray (108 cfu mL−1) and tested for control of the disease in the glasshouse. Two groundnut seed-associated bacterial isolates, GSE 18 and GSE 19, identified as Pseudomonas aeruginosa, reduced the lesion frequency (LF) by up to 70%. A 90-day-old peat-based formulation of P. aeruginosa GSE 18 reduced LF measured 15 days postinoculation by up to 60%. Both P. aeruginosa GSE 18 and GSE 19 were tolerant to chlorothalonil (Kavach®) up to 2000 µg mL−1 in LB broth. In glasshouse trials, GSE 18 and GSE 19 tested in combination with reduced concentrations of chlorothalonil were highly efficient in management of the disease. The disease was completely controlled by chlorothalonil (> 250 µg mL−1), and in the presence of GSE 18 or GSE 19, 100 µg mL−1 chlorothalonil was equally effective. Application of rifamycin-resistant mutants of GSE 18 or GSE 19 together with chlorothalonil significantly increased the survival of these isolates in the groundnut phylloplane. In the field, a combination of GSE 18 and 500 µg mL−1 chlorothalonil reduced disease severity comparable to 2000 µg mL−1 chlorothalonil alone. Use of chlorothalonil-tolerant pseudomonads together with a quarter concentration of the recommended field dose of chlorothalonil doubled pod yield compared with the untreated unsprayed control.

Aim: To isolate and characterize groundnut-associated bacterial isolates for growth promotion of groundnut in field. Methods and Results: Three hundred and ninety-three groundnut-associated bacteria, representing the geocarposphere, phylloplane and rhizosphere, and endophytes were applied as seed treatment in greenhouse. Maximum increase in plant biomass (up to 26%) was observed following treatment with a rhizosphere isolate identified as Bacillus firmis GRS 123, and two phylloplane isolates Bacillus megaterium GPS 55 and Pseudomonas aeruginosa GPS 21. There was no correlation between the production of L-tryptophan-derived auxins and growth promotion by the test isolates. Actively growing cells and peat formulations of GRS 123 and GPS 55, and actively growing cells of GPS 21, significantly increased the plant growth and pod yield (up to 19%) in field. Rifampicin-resistant mutants of GRS 123 and GPS 21 colonized the ecto- and endorhizospheres of groundnut, respectively, up to 100 days after sowing (DAS), whereas GPS 55 was recovered from both the habitats at 100 DAS. Conclusion: Seed bacterization with phylloplane isolates promoted groundnut growth indicating the possibility of isolating rhizosphere beneficial bacteria from different habitats. Significance and Impact of the Study: Identification of phylloplane bacteria as effective plant growth-promoting rhizobacteria (PGPR) broadens the spectrum of PGPR available for field application

Chitinolytic Serratia marcescens GPS 5 and non-chitinolytic Pseudomonas aeruginosa GSE 18, with and without supplementation of chitin, were tested for their ability to activate defence-related enzymes in groundnut leaves. Thirty-day-old groundnut (cv. TMV 2) plants pretreated with GPS 5 and GSE 18 (with and without supplementation of 1% colloidal chitin) were challenge inoculated after 24 h with Phaeoisariopsis personata, the causal agent of late leaf spot (LLS) disease of groundnut. GPS 5 and GSE 18, applied as a prophylactic spray, reduced the lesion frequency by 23% and 67%, respectively, compared with control. Chitin supplementation had no effect on the control of LLS by GSE 18, unlike GPS 5, which upon chitin supplementation reduced the lesion frequency by 64%, compared with chitin alone. In a time course study the activities of chitinase, β-1,3- glucanase, peroxidase and phenylalanine ammonia lyase were determined for the different treatments. There was an enhanced activity of the four defence-related enzymes with all the bacterial treatments when compared with phosphate buffer and colloidal chitin-treated controls. In correlation to disease severity in bacterial treatments, chitin-supplemented GSE 18 was similar to GSE 18, whereas chitin-supplemented GPS 5 was much more effective than GPS 5, in activation of the defence-related enzymes. The high levels of enzyme activities following chitin-supplemented GPS 5 application continued up to the measured 13 days after pathogen inoculation

Bacteria associated with 6 habitats of groundnut were evaluated for their broad-spectrum antifungal activity and suppression of collar rot (Aspergillus niger) of groundnut. Three hundred and ninety-three strains were tested against 8 fungal pathogens of groundnut including 5 necrotrophic fungi, Aspergillus flavus, A. niger, Rhizoctonia bataticola, Rhizoctonia solani, and Sclerotium rolfsii, and 3 biotrophic fungi, Cercospora arachidicola, Phaeoisariopsis personata, and Puccinia arachidis. Pseudomonas sp. GRS 175, Pseudomonas aeruginosa GPS 21, GSE 18, GSE 19, and GSE 30, and their cell-free culture filtrates were highly antagonistic to all the test fungi. The cell-free culture filtrates of these bacteria were fungicidal and induced mycelial deformations including hyphal bulging and vacuolization in necrotrophic fungi. The cell-free culture filtrates at 10% (v/v) concentration significantly inhibited the spore germination of biotrophic fungi. In the greenhouse, P. aeruginosa GSE 18 emerged as an effective biocontrol agent of collar rot closely followed by P. aeruginosa GSE 19. The bacterium applied as a seed treatment reduced the pre-emergence rotting and postemergence wilting by >60%. Pseudomonas aeruginosa GSE 18 effectively colonized the groundnut rhizosphere, both in native and in A. niger infested potting mixtures. Ninety-day-old peat formulation of P. aeruginosa GSE 18 had biocontrol ability comparable with the midlog-phase cells. Pseudomonas aeruginosa GSE 18, tolerant to thiram, in combination with the fungicide had an improved collar rot control. The present study was a successful attempt in selection of broad-spectrum and fungicide tolerant biocontrol agents that can be a useful component of integrated management of collar rot.Key words: Arachis, biocontrol, crown rot, peanut.

A complete understanding of the epidemiological factors required for optimum for disease development facilitates the design of effective and reliable screening techniques and also disease prediction models. An attempt was made to study the effects of different temperatures (15- 35oC) and leaf wetness periods (4-24 h) on the development of late leaf spot (LLS) in three groundnut genotypes differing in their susceptibility to LLS infection. Irrespective of the genotype, the disease progress evaluated based on different components of resistance was maximum between 15-20oC and minimum between 20-25oC. At temperatures iA30oC, LLS development was insignificant. The overall severity of LLS increased with an increase in the leaf wetness period from 4 h to 12 h a day. Further increase of wetness period to 16 h resulted in a rapid increase in the severity. Thereafter, the disease severity gradually decreased with an increase in the wetness period. The effect of temperature and wetness periods on the individual component of disease quantification was not uniform compared between genotypes with different levels of susceptibility/resistance to LLS infection. The results of this study indicate that temperature and leaf wetness period are critical in late leaf spot screening programs since the expression of disease symptoms measured from disease initiation till defoliation, varied differently in the test genotypes with respect to change in these two parameters.

Andhra Pradesh is one of the major groundnut growing states in India. A total of 182 groundnut samples collected at harvesting from farmers fields in five districts, namely; Anantapur, Chittoor, Cuddapah, Kurnool, and Mahaboobnagar, during 1999 and 2000 rainy seasons were evaluated for the presence of mycotoxins (both aflatoxins and zearalenone) and toxigenic fungi. In samples collected from each district, average seed infection by Aspergillus flavus and Fusarium spp. was 11.9-18.3% and 5.6-12.8% in 1999, and 9.5-14.1% and 9.4-11.9% in 2000, respectively. Among the samples collected, 20.3% and 16.5% were contaminated with aflatoxin in 1999 and 2000, respectively, and in 11.4% and 8.7% of the seed samples collected in two seasons, the aflatoxin content was >30 mg/kg. An alarming aflatoxin content of 851.9 mg/kg was found in samples collected from Anantapur district during the rainy season in 1999. Zearalenone was not detected in any of the samples collected in 1999, while 2 out of 103 samples collected in 2000 were contaminated with 35.1 and 129.4 mg/kg. Under in vitro cultural conditions, 35.8% of the 173 A. flavus isolates collected from the groundnut samples produced aflatoxins at concentrations of 94.3- 1598.6 ng/ml and 3% of the 266 Fusarium spp. isolates produced 98.1-847.3 mg/g of zearalenone. The results emphasize the need for a more systematic and regular monitoring of pre-harvest aflatoxin contamination.

Late leaf spot (LLS) and rust cause substantial yield losses and reduce the fodder and seed quality in groundnut (Arachis hypogaea L.). Adoption of resistant cultivars by the semi-arid tropic farmers is the best option to overcome yield losses. Knowledge on components of resistance to these diseases should facilitate the development of groundnut cultivars with enhanced resistance to LLS and rust. The objectives of the experiments were to study the genetic variability and relationships among components of resistance to LLS and rust, and assess their significance in disease resistance breeding. Fifteen interspecific derivatives for LLS and 14 for rust and a susceptible control, TMV 2, were evaluated in a randomised complete block design with two or three replications under greenhouse conditions. The experiments were repeated twice. Genotypic differences were highly significant for all the traits studied. Resistance to LLS is due to longer incubation and latent periods, lesser lesions per leaf, smaller lesion diameter, lower sporulation index, and lesser leaf area damage and disease score. Selection based on components of resistance to LLS may not lead to plants with higher retained green leaf area. The remaining green leaf area on the plant should, therefore, be the major selection criteria for resistance to LLS in breeding programs. Resistance to rust is due to longer incubation and latent periods, fewer pustules per leaf, smaller pustule diameter, lower sporulation index, and lesser leaf area damage and disease score. Rust resistant components appear to work additively, therefore, selection based on resistance components together with green leaf area retained on the plant should be the basis of selecting for resistance to rust in breeding programs. ICGV 99005, 99003, 99012, and 99015 for rust and ICGV 99006, 99013, 99004, 99003, and 99001 for LLS are the better parents for use in resistance breeding programs.

Fusarium wilt (FW) and Ascochyta blight (AB) are two major constraints to chickpea (Cicer arietinum ) production,Fusarium wilt (FW) and Ascochyta blight (AB) are two major constraints to chickpea (Cicer arietinum L.) production. Therefore, two parallel marker-assisted backcrossing (MABC) programs by targeting foc1 locus and two quantitative trait loci (QTL) regions, ABQTL-I and ABQTL-II, were undertaken to introgress resistance to FW and AB, respectively, in C 214, an elite cultivar of chickpea. In the case of FW, foreground selection (FGS) was conducted with six markers (TR19, TA194, TAA60, GA16, TA110, and TS82) linked to foc1 in the cross C 214 × WR 315 (FW-resistant). On the other hand, eight markers (TA194, TR58, TS82, GA16, SCY17, TA130, TA2, and GAA47) linked with ABQTL-I and ABQTL-II were used in the case of AB by deploying C 214 × ILC 3279 (AB-resistant) cross. Background selection (BGS) in both crosses was employed with evenly distributed 40 (C 214 × WR 315) to 43 (C 214 × ILC 3279) SSR markers in the chickpea genome to select plant(s) with higher recurrent parent genome (RPG) recovery. By using three backcrosses and three rounds of selfing, 22 BC3F4 lines were generated for C 214 × WR 315 cross and 14 MABC lines for C 214 × ILC 3279 cross. Phenotyping of these lines has identified three resistant lines (with 92.7–95.2% RPG) to race 1 of FW, and seven resistant lines (with 81.7–85.40% RPG) to AB that may be tested for yield and other agronomic traits under multilocation trials for possible release and cultivation.

Late leaf spot (LLS) caused by Phaeoisariopsis personata [(Berk and Curt) v. Arx = Cercosporidium personatum (Berk. & Curt.) Deighton] and rust caused by Puccinia arachidis (Speg.) are the two most destructive fungal foliar diseases of groundnut worldwide. Together, these two diseases can cause more than 50% yield loss in groundnut in many countries. Foliar disease management in groundnut often involves indiscriminate use of chemicals or total reliance on host plant resistance (HPR). On-station experiments on integrated disease management (IDM) at ICRISAT-Patancheru, India, have clearly demonstrated that when moderate levels of HPR are combined with seed treatment and affordable levels of chemical control, expected yields and economic returns are higher than obtained with chemical control of susceptible genotypes. We evaluated the performance of this combination in on-farm farmer-participatory research. The groundnut genotypes were ICGV 89104, ICGV 91114, TMV 2 and a local cultivar. Thirty farmers from An...

Sorghum midge (Stenodiplosis (=Contarinia) sorghicola Coquillett) is an important pest of grain sorghum worldwide, and several sources of resistance have been identified in the world sorghum germplasm collection. DJ 6514 and the breading lines derived from it become susceptible to sorghum midge in Kenya. Therefore, we evaluated a diverse array of midge-resistant and -susceptible lines at Alupe, Kenya; and ICRISTAT Center, India, to identify lines with stable resistance across seasons and locations. The test material was also evaluated for resistance to leaf diseases at Alupe, Kenya; to identify lines with multiple resistance to sorghum midge and leaf diseases. Across seasons and locations; IS 3461, IS 8884, IS 8887, IS 8891, IS 19476, IS 22806, and AF 28 showed high to moderate levels of resistance to midge, and these lines will be useful for use in resistance breeding programs. Thirty-nine lines showed resistance to midge both under natural infestation and no-choice headcage screening at ICRISTAT Center, India, over four seasons, of which IS 18696, IS 22806, ICSV, 197, ICSV 745, ICSV 88032, PM 20710-2, DJ 6514, and AF 28 were highly resistant. Genotypes IS 3461, IS 8884, IS 8887, IS 8589, IS 19476, IS 22806, ICSV 736, ICSV 90003, and AF 28 showed moderate levels of resistance to both midge and leaf diseases at Alupe, Kenya; and these lines can be used as sources of multiple resistance to these pests. Lines IS 2766, IS 7148, IS 8733, and IS 8589, showed high levels of resistance to leaf diseases in Kenya. Resistance to midge breaks down in some lines at Alupe, Kenya; possibly because of the influence of environment on the expression of resistance or the possible differences in midge populations at different geographic locations.

Annual yield losses due to pests are estimated to be in billions of dollars worldwide. Plant protection is one of the most important components of crop production in most agricultural areas of the world, and the effectiveness of crop protection depends on accurate and timely diagnosis of phytosanitary problems. A great deal of knowledge in plant protection and technologies exists in the scientific domain. The dissemination of these technologies could be enhanced by using expert systems and other artificial intelligence technologies. Expert systems are simple, yet powerful enough to provide a considerable amount of written and visual information. They are good for solving complex problems and they are modular and modifiable. They are affordable, consistent in prediction, and have the advantages of expressiveness and intuitiveness. However, a rapid generation tool is necessary to reduce the time needed to build expert systems for different crops. A domain-specific generic software for the generation of expert systems was developed, and used to build a prototype barley protection expert system based on existing knowledge. Web knowledge acquisition forms were developed for barley, chickpea, and wheat, and encoded in XML format. The knowledge bases relating to plant protection for barley, wheat, and chickpea were captured using knowledge accumulated by scientists in the co-operating centers. The knowledge base for each crop was divided into four components: variety or host plant selection, cultural practices, pest identification, and pest control.

Studies were conducted to determine the influence of plant growth stage, inoculum density, temperature, and relative humidity (RH) on development of rust (Puccinia pupurea) in sorghum (Sorghum bicolor). Rust development was maximum (>80% severity), when plants of a susceptible sorghum genotype (IS 18420) were inoculated at the four‐ to five‐leaf stage with an inoculum concentration of 4 × 106 urediniospores per ml and incubated at 20–25°C under high RH (>90%) for 24 h. Disease severity (percentage leaf area covered with rust pustules) scores were taken 2 weeks after inoculation. Using this technique, 29 sorghum genotypes were screened for rust resistance in a greenhouse. This technique proved effective In discerning resistant and susceptible genotypes, and IS 3979, ICSH 110, ICSH 86647 and ICSH 871035 were identified resistant (

Fifty isolates of dry root rot pathogen Rhizoctonia bataticola collected from different agro-climatic zones in India were evaluated for the degree of subdivision in isolates level. The isolates showed variability in pathogenicity test. Genetic characteristics were analyzed based on the sequence of the rDNA-internal transcribed spacer (ITS) region. The phylogenetic tree based on rDNA-ITS analysis showed that the maximum number of R. bataticola isolates were very diverse and did not depend on geographical origin. Both pathological and molecular data correlated each other and supported that the R. bataticola present in India were very diverse and independent to their origin.