17 results on '"Sudevan S"'
Search Results
2. Study on hourly temperature features over Mumbai, Thiruvananthapuram and Minicoy during 1969-2012
- Author
-
SUDEVAN, S., primary, NIYAS, N. T., additional, SANTHOSH, K., additional, and CHAND, RAMESH, additional
- Published
- 2021
- Full Text
- View/download PDF
3. OBJECTIVE CRITERIA FOR WITHDRAWAL OF SOUTHWEST MONSOON BASED ON OLR DATA
- Author
-
SHYAMALA, B., primary and SUDEVAN, S., additional
- Published
- 1999
- Full Text
- View/download PDF
4. Study on hourly temperature features over Mumbai, Thiruvananthapuram and Minicoy during 1969-2012
- Author
-
Sudevan, S., Niyas, N. T., Santhosh, K., and Ramesh Chand
- Subjects
Atmospheric Science ,Geophysics - Abstract
Amongst all the climatic elements, temperature plays a major role in detecting and analyzing climatic change and its impact. The variability in resident time of the surface temperature is studied to investigate whether any change in temperature has taken place. Analysis of the results is presented for Mumbai, a mega city with large change in land-use pattern, Thiruvananthapuram, a semi-urban city with moderate changes in land-use pattern and Minicoy, an Island city without much change in land-use pattern. These three places representing varying geographical locations and climatic conditions are unique in nature, however having uniform maritime influence. It is revealed that the change is large in Mumbai in comparison with others as expected. The study proposes a new methodology based on the resident time of temperatures and its trend and could be used as a tool for relative ranking of cities and to gauge the source and sink regions of climate change forcing. The resident time of temperatures shows increasing trend above the mean temperature and decreasing trend below the mean temperature of the initial decade. Decadal linear increasing trends in mean temperatures are 0.256 °C, 0.159 °C and 0.146 °C per decade for Mumbai, Thiruvananthapuram and Minicoy respectively. This confirms the effect of global warming unequivocally irrespective of urban effect. Decadal linear increasing trends in mean temperature during non-monsoon season for Mumbai, Thiruvananthapuram and Minicoy are 0.315 °C, 0.155 °C and 0.181 °C per decade respectively. The rate of increase of mean temperature for Mumbai and Minicoy during monsoon season is 0.143 °C and 0.081 °C per decade respectively, are significantly less than the decadal trend in annual mean, which suggests that rainfall activity seems to be the correction factor for the increasing trend in the annual mean temperature which otherwise would have been a higher value. However, the rate of increase of mean temperature for Thiruvananthapuram during monsoon season for the study period is 0.172 °C per decade, which is slightly higher than the decadal trend in annual mean. Noticeable changes in resident time during monsoon season are in conformity with change in rainfall patterns.
5. Discerning of isatin-based monoamine oxidase (MAO) inhibitors for neurodegenerative disorders by exploiting 2D, 3D-QSAR modelling and molecular dynamics simulation.
- Author
-
Kumar S, Jayan J, Manoharan A, Benny F, Abdelgawad MA, Ghoneim MM, El-Sherbiny M, Thazhathuveedu Sudevan S, Aneesh TP, and Mathew B
- Subjects
- Humans, Monoamine Oxidase Inhibitors pharmacology, Monoamine Oxidase Inhibitors chemistry, Monoamine Oxidase Inhibitors metabolism, Quantitative Structure-Activity Relationship, Molecular Dynamics Simulation, Molecular Docking Simulation, Monoamine Oxidase chemistry, Structure-Activity Relationship, Isatin, Neurodegenerative Diseases drug therapy
- Abstract
Almost a billion people worldwide suffer from neurological disorders, which pose public health challenges. An important enzyme that is well-known for many neurodegenerative illnesses is monoamine oxidase (MAO). Although several promising drugs for the treatment of MAO inhibition have recently been examined, it is still necessary to identify the precise structural requirements for robust efficacy. Atom-based, field-based, and GA-MLR (genetic algorithm multiple linear regression) models were created for this investigation. All of the models have strong statistical ( R
2 ) foundations because of both internal and external validation. Our dataset's molecule has a higher docking score than safinamide, a well-known and co-crystallized MAO-B inhibitor, as we also noticed. Using the SwissSimilarity platform, we further inquired which of our docked molecules would be the best for screening. We chose ZINC000016952895 as the screen molecule with the best binding docking score (XP score = -13.3613). Finally, the 100 ns for the ZINC000016952895-MAO-B complex in our MD investigations is stable. For compounds that we hit, also anticipate ADME properties. Our research revealed that the successful compound ZINC000016952895 might pave the way for the future development of MAO inhibitors for the treatment of neurological disease.Communicated by Ramaswamy H. Sarma.Q2 ) foundations because of both internal and external validation. Our dataset's molecule has a higher docking score than safinamide, a well-known and co-crystallized MAO-B inhibitor, as we also noticed. Using the SwissSimilarity platform, we further inquired which of our docked molecules would be the best for screening. We chose ZINC000016952895 as the screen molecule with the best binding docking score (XP score = -13.3613). Finally, the 100 ns for the ZINC000016952895-MAO-B complex in our MD investigations is stable. For compounds that we hit, also anticipate ADME properties. Our research revealed that the successful compound ZINC000016952895 might pave the way for the future development of MAO inhibitors for the treatment of neurological disease.Communicated by Ramaswamy H. Sarma.- Published
- 2024
- Full Text
- View/download PDF
6. Increased mitochondrial Ca 2+ contributes to health decline with age and Duchene muscular dystrophy in C. elegans.
- Author
-
Higashitani A, Teranishi M, Nakagawa Y, Itoh Y, Sudevan S, Szewczyk NJ, Kubota Y, Abe T, and Kobayashi T
- Subjects
- Animals, Caenorhabditis elegans, Mitochondria pathology, Muscle, Skeletal metabolism, Calcium metabolism, Sarcopenia pathology, Muscular Dystrophies metabolism
- Abstract
Sarcopenia is a geriatric syndrome characterized by an age-related decline in skeletal muscle mass and strength. Here, we show that suppression of mitochondrial calcium uniporter (MCU)-mediated Ca
2+ influx into mitochondria in the body wall muscles of the nematode Caenorhabditis elegans improved the sarcopenic phenotypes, blunting movement and mitochondrial structural and functional decline with age. We found that normally aged muscle cells exhibited elevated resting mitochondrial Ca2+ levels and increased mitophagy to eliminate damaged mitochondria. Similar to aging muscle, we found that suppressing MCU function in muscular dystrophy improved movement via reducing elevated resting mitochondrial Ca2+ levels. Taken together, our results reveal that elevated resting mitochondrial Ca2+ levels contribute to muscle decline with age and muscular dystrophy. Further, modulation of MCU activity may act as a potential pharmacological target in various conditions involving muscle loss., (© 2023 The Authors. The FASEB Journal published by Wiley Periodicals LLC on behalf of Federation of American Societies for Experimental Biology.)- Published
- 2023
- Full Text
- View/download PDF
7. Sulfur amino acid supplementation displays therapeutic potential in a C. elegans model of Duchenne muscular dystrophy.
- Author
-
Ellwood RA, Slade L, Lewis J, Torregrossa R, Sudevan S, Piasecki M, Whiteman M, Etheridge T, and Szewczyk NJ
- Subjects
- Animals, Caenorhabditis elegans genetics, Sulfur, Cysteine, Dietary Supplements, Muscular Dystrophy, Duchenne drug therapy, Muscular Dystrophy, Duchenne genetics
- Abstract
Mutations in the dystrophin gene cause Duchenne muscular dystrophy (DMD), a common muscle disease that manifests with muscle weakness, wasting, and degeneration. An emerging theme in DMD pathophysiology is an intramuscular deficit in the gasotransmitter hydrogen sulfide (H
2 S). Here we show that the C. elegans DMD model displays reduced levels of H2 S and expression of genes required for sulfur metabolism. These reductions can be offset by increasing bioavailability of sulfur containing amino acids (L-methionine, L-homocysteine, L-cysteine, L-glutathione, and L-taurine), augmenting healthspan primarily via improved calcium regulation, mitochondrial structure and delayed muscle cell death. Additionally, we show distinct differences in preservation mechanisms between sulfur amino acid vs H2 S administration, despite similarities in required health-preserving pathways. Our results suggest that the H2 S deficit in DMD is likely caused by altered sulfur metabolism and that modulation of this pathway may improve DMD muscle health via multiple evolutionarily conserved mechanisms., (© 2022. The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
8. Histone Chaperone Nucleophosmin Regulates Transcription of Key Genes Involved in Oral Tumorigenesis.
- Author
-
Senapati P, Bhattacharya A, Das S, Dey S, Sudarshan D, G S, Vishwakarma J, Sudevan S, Ramachandran R, Maliekal TT, and Kundu TK
- Subjects
- Animals, Carcinogenesis metabolism, Carcinoma, Squamous Cell genetics, Chromatin Assembly and Disassembly genetics, Chromatin Assembly and Disassembly physiology, Gene Expression Regulation genetics, Histones metabolism, Humans, Nuclear Proteins metabolism, Promoter Regions, Genetic genetics, Carcinoma, Squamous Cell metabolism, Gene Expression Regulation physiology, Histone Chaperones metabolism, Mouth Neoplasms genetics, Nucleophosmin metabolism
- Abstract
Nucleophosmin (NPM1) is a multifunctional histone chaperone that can activate acetylation-dependent transcription from chromatin templates in vitro . p300-mediated acetylation of NPM1 has been shown to further enhance its transcription activation potential. Acetylated and total NPM1 pools are increased in oral squamous cell carcinoma. However, the role of NPM1 or its acetylated form (AcNPM1) in transcriptional regulation in cells and oral tumorigenesis is not fully elucidated. Using ChIP-seq analyses, we provide the first genome-wide profile of AcNPM1 and show that AcNPM1 is enriched at transcriptional regulatory elements. AcNPM1 co-occupies marks of active transcription at promoters and DNase I hypersensitive sites at enhancers. In addition, using a high-throughput protein interaction profiling approach, we show that NPM1 interacts with RNA Pol II, general transcription factors, mediator subunits, histone acetyltransferase complexes, and chromatin remodelers. NPM1 histone chaperone activity also contributes to its transcription activation potential. Further, NPM1 depletion leads to decreased AcNPM1 occupancy and reduced expression of genes required for proliferative, migratory and invasive potential of oral cancer cells. NPM1 depletion also abrogates the growth of orthotopic tumors in mice. Collectively, these results establish that AcNPM1 functions as a coactivator during during RNA polymerase II-driven transcription and regulates the expression of genes that promote oral tumorigenesis.
- Published
- 2022
- Full Text
- View/download PDF
9. The Impacts of Psychological Distress on Life Satisfaction and Wellbeing of the Indian General Population During the First and Second Waves of COVID-19: A Comparative Study.
- Author
-
Lathabhavan R and Sudevan S
- Abstract
The current study aims to understand the impact of psychological distress caused by the COVID-19 pandemic on life satisfaction and wellbeing, in the Indian context. The study also analyses the differences in these effects between the first and second waves of the pandemic. For this purpose, a survey was conducted during the two waves of the pandemic. Eight hundred eighty-four and 925 respondents participated in the first and second waves, respectively. The study showed that depression, anxiety, and stress negatively related to life satisfaction and wellbeing during both waves. The study also showed that the effects were stronger during the second wave compared to the first. Life satisfaction and wellbeing of women were found to be affected to a higher level than those of men, due to psychological distress. The study showed that a combined approach involving coping mechanisms and health care can help manage the psychological issues that arise with crisis situations such as the COVID-19 pandemic., (© The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2021.)
- Published
- 2022
- Full Text
- View/download PDF
10. Loss of physical contact in space alters the dopamine system in C. elegans .
- Author
-
Sudevan S, Muto K, Higashitani N, Hashizume T, Higashibata A, Ellwood RA, Deane CS, Rahman M, Vanapalli SA, Etheridge T, Szewczyk NJ, and Higashitani A
- Abstract
Progressive neuromuscular decline in microgravity is a prominent health concern preventing interplanetary human habitation. We establish functional dopamine-mediated impairments as a consistent feature across multiple spaceflight exposures and during simulated microgravity in C. elegans . Animals grown continuously in these conditions display reduced movement and body length. Loss of mechanical contact stimuli in microgravity elicits decreased endogenous dopamine and comt-4 (catechol-O-methyl transferase) expression levels. The application of exogenous dopamine reverses the movement and body length defects caused by simulated microgravity. In addition, increased physical contact made comt-4 and dopamine levels rise. It also increased muscular cytoplasmic Ca
2+ firing. In dop-3 (D2-like receptor) mutants, neither decrease in movement nor in body length were observed during simulated microgravity growth. These results strongly suggest that targeting the dopamine system through manipulation of the external environment (contact stimuli) prevents muscular changes and is a realistic and viable treatment strategy to promote safe human deep-space travel., Competing Interests: Authors declare that they have no competing interests., (© 2022 The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
11. Increased hydrostatic pressure induces nuclear translocation of DAF-16/FOXO in C. elegans.
- Author
-
Watanabe N, Morimatsu M, Fujita A, Teranishi M, Sudevan S, Watanabe M, Iwasa H, Hata Y, Kagi H, Nishiyama M, Naruse K, and Higashitani A
- Subjects
- Adaptor Proteins, Signal Transducing, Animals, Caenorhabditis elegans genetics, Gene Expression Regulation, Larva metabolism, Longevity, Motor Activity, Protein Transport, Transcription, Genetic, YAP-Signaling Proteins, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins metabolism, Cell Nucleus metabolism, Forkhead Transcription Factors metabolism, Hydrostatic Pressure
- Abstract
Mechanical stimulation is well known to be important for maintaining tissue and organ homeostasis. Here, we found that hydrostatic pressure induced nuclear translocation of a forkhead box O (FOXO) transcription factor DAF-16, in C. elegans within minutes, whereas the removal of this pressure resulted in immediate export of DAF-16 to the cytoplasm. We also monitored DAF-16-dependent transcriptional changes by exposure to 1 MPa pressure for 5 min, and found significant changes in collagen and other genes in a DAF-16 dependent manner. Lifespan was markedly prolonged with exposure to cyclic pressure treatment (1 MPa once a day for 5 min from L1 larvae until death). Furthermore, age-dependent decline in locomotor activity was suppressed by the treatment. In contrast, the nuclear translocation of the yes-associated protein YAP-1 was not induced under the same pressure conditions. Thus, moderate hydrostatic pressure improves ageing progression through activation of DAF-16/FOXO in C. elegans., Competing Interests: Declaration of competing interest The authors declare that they have no competing interests., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
12. Haploinsufficient tumor suppressor Tip60 negatively regulates oncogenic Aurora B kinase.
- Author
-
Bose A, Sudevan S, Rao VJ, Shima H, Trivedi AK, Igarashi K, and Kundu TK
- Subjects
- Acetylation, Carcinogenesis genetics, E1A-Associated p300 Protein genetics, Haploinsufficiency genetics, Humans, Lysine Acetyltransferases genetics, Neoplasms pathology, Phosphorylation genetics, Aurora Kinase B genetics, Lysine Acetyltransferase 5 genetics, Mitosis genetics, Neoplasms genetics
- Abstract
The Aurora kinases represent a group of serine/threonine kinases which are crucial regulators of mitosis. Dysregulated Aurora kinase B (AurkB) expression, stemming from genomic amplification, increased gene transcription or overexpression of its allosteric activators, is capable of initiating and sustaining malignant phenotypes. Although AurkB level in cells is well-orchestrated, studies that relate to its stability or activity, independent of mitosis, are lacking. We report that AurkB undergoes acetylation in vitro by lysine acetyltransferases (KATs) belonging to different families, namely by p300 and Tip60. The haploinsufficient tumor suppressor Tip60 acetylates two highly conserved lysine residues within the kinase domain of AurkB which not only impinges the protein stability but also its kinase activity. These results signify a probable outcome on the increase in "overall activity" of AurkB upon Tip60 downregulation, as observed under cancerous conditions. The present work, therefore, uncovers an important functional interplay between AurkB and Tip60, frailty of which may be an initial event in carcinogenesis.
- Published
- 2019
13. Mitochondrial dysfunction causes Ca 2+ overload and ECM degradation-mediated muscle damage in C. elegans .
- Author
-
Sudevan S, Takiura M, Kubota Y, Higashitani N, Cooke M, Ellwood RA, Etheridge T, Szewczyk NJ, and Higashitani A
- Subjects
- Animals, Antimycin A pharmacology, Blotting, Western, Caenorhabditis elegans, Caenorhabditis elegans Proteins metabolism, Disease Models, Animal, Extracellular Matrix drug effects, Extracellular Matrix metabolism, Extracellular Matrix pathology, Furin metabolism, Matrix Metalloproteinases metabolism, Mitochondria drug effects, Muscle, Skeletal drug effects, Muscle, Skeletal metabolism, Muscle, Skeletal pathology, Muscular Dystrophy, Animal, Muscular Dystrophy, Duchenne, Calcium metabolism, Mitochondria metabolism, Mitochondria pathology
- Abstract
Mitochondrial dysfunction impairs muscle health and causes subsequent muscle wasting. This study explores the role of mitochondrial dysfunction as an intramuscular signal for the extracellular matrix (ECM)-based proteolysis and, consequentially, muscle cell dystrophy. We found that inhibition of the mitochondrial electron transport chain causes paralysis as well as muscle structural damage in the nematode Caenorhabditis elegans . This was associated with a significant decline in collagen content. Both paralysis and muscle damage could be rescued with collagen IV overexpression, matrix metalloproteinase (MMP), and Furin inhibitors in Antimycin A-treated animal as well as in the C. elegans Duchenne muscular dystrophy model. Additionally, muscle cytosolic calcium increased in the Antimycin A-treated worms, and its down-regulation rescued the muscle damage, suggesting that calcium overload acts as one of the early triggers and activates Furin and MMPs for collagen degradation. In conclusion, we have established ECM degradation as an important pathway of muscle damage.-Sudevan, S., Takiura, M., Kubota, Y., Higashitani, N., Cooke, M., Ellwood, R. A., Etheridge, T., Szewczyk, N. J., Higashitani, A. Mitochondrial dysfunction causes Ca
2+ overload and ECM degradation-mediated muscle damage in C. elegans .- Published
- 2019
- Full Text
- View/download PDF
14. Investigation of anti-inflammatory and anti-cancer activity of Justicia adathoda metabolites.
- Author
-
Sudevan S, Parasivam R, Sundar S, Velauthan H, and Ramasamy V
- Subjects
- Anti-Bacterial Agents chemistry, Anti-Inflammatory Agents, Non-Steroidal chemistry, Antineoplastic Agents, Phytogenic chemistry, Drug Evaluation, Preclinical, Escherichia coli drug effects, HeLa Cells, Humans, Hyaluronoglucosaminidase antagonists & inhibitors, Justicia metabolism, Phytochemicals analysis, Plant Extracts chemistry, Plants, Medicinal chemistry, Plants, Medicinal metabolism, Anti-Bacterial Agents pharmacology, Anti-Inflammatory Agents, Non-Steroidal pharmacology, Antineoplastic Agents, Phytogenic pharmacology, Justicia chemistry, Plant Extracts pharmacology
- Abstract
To analyse metabolic compounds of Justicia adathoda to evaluate against pathogens, inflammation and cervical cancer. The investigation exposed that the extracts of Justicia adathoda have potent metabolic to eradicate the human diseases. The antibacterial, tumorolytic and anti-inflammatory activity of ethyl acetate and aqueous extracts of Justicia adathoda (leaves) were assessed. In vitro anti-inflammatory activity was assessed by standard procedures. Justicia adathoda metabolic exhibit anticancer activity in human cervical cancer cell line (HeLa) (in vitro) analysis. Flavonoids, saponins, alkaloids, amino acids, tannins and terpenoids were present in both the extracts. The active components present in the extracts were found to be amino acids, alkaloids, lipids and triterpenoids which have antibacterial activity shows inhibition against Salmonella and Escherichia coli. Justicia adathoda possesses significant anti-inflammatory activity and it was confirmed by in-vitro analysis. The anticancer activity was found effective in human cervical cancer cell line (HeLa) (in-vitro) analysis. From the investigation could conclude that the metabolic compounds Justicia adathoda is effective against Anti-inflammation and ethyl acetate extract of Justicia adathoda are effective for Cancer.
- Published
- 2019
15. Heat-Induced Calcium Leakage Causes Mitochondrial Damage in Caenorhabditis elegans Body-Wall Muscles.
- Author
-
Momma K, Homma T, Isaka R, Sudevan S, and Higashitani A
- Subjects
- Animals, Caenorhabditis elegans genetics, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins antagonists & inhibitors, Caenorhabditis elegans Proteins genetics, Caenorhabditis elegans Proteins metabolism, Calcium metabolism, Dantrolene pharmacology, Forkhead Transcription Factors antagonists & inhibitors, Forkhead Transcription Factors genetics, Forkhead Transcription Factors metabolism, Ionomycin pharmacology, Mitochondria, Muscle drug effects, Receptor, Insulin, Ryanodine Receptor Calcium Release Channel genetics, Ryanodine Receptor Calcium Release Channel metabolism, Calcium Signaling, Heat-Shock Response, Mitochondria, Muscle metabolism, Myofibrils metabolism
- Abstract
Acute onset of organ failure in heatstroke is triggered by rhabdomyolysis of skeletal muscle. Here, we showed that elevated temperature increases free cytosolic Ca
2+ [Ca2+ ]f from RYR (ryanodine receptor)/UNC-68 in vivo in the muscles of an experimental model animal, the nematode Caenorhabditis elegans This subsequently leads to mitochondrial fragmentation and dysfunction, and breakdown of myofilaments similar to rhabdomyolysis. In addition, treatment with an inhibitor of RYR (dantrolene) or activation of FoxO (Forkhead box O)/DAF-16 is effective against heat-induced muscle damage. Acute onset of organ failure in heatstroke is triggered by rhabdomyolysis of skeletal muscle. To gain insight into heat-induced muscle breakdown, we investigated alterations of Ca2+ homeostasis and mitochondrial morphology in vivo in body-wall muscles of C. elegans exposed to elevated temperature. Heat stress for 3 hr at 35° increased the concentration of [Ca2+ ]f, and led to mitochondrial fragmentation and subsequent dysfunction in the muscle cells. A similar mitochondrial fragmentation phenotype is induced in the absence of heat stress by treatment with a calcium ionophore, ionomycin. Mutation of the unc-68 gene, which encodes the ryanodine receptor that is linked to Ca2+ release from the sarcoplasmic reticulum, could suppress the mitochondrial dysfunction, muscle degeneration, and reduced mobility and life span induced by heat stress. In addition, in a daf-2 mutant, in which the DAF-16/FoxO transcription factor is activated, resistance to calcium overload, mitochondrial fragmentation, and dysfunction was observed. These findings reveal that heat-induced Ca2+ accumulation causes mitochondrial damage and consequently induces muscle breakdown., (Copyright © 2017 Momma et al.)- Published
- 2017
- Full Text
- View/download PDF
16. SERS and MD simulation studies of a kinase inhibitor demonstrate the emergence of a potential drug discovery tool.
- Author
-
Karthigeyan D, Siddhanta S, Kishore AH, Perumal SS, Ågren H, Sudevan S, Bhat AV, Balasubramanyam K, Subbegowda RK, Kundu TK, and Narayana C
- Subjects
- Animals, Aurora Kinase A antagonists & inhibitors, Aurora Kinase A chemistry, Aurora Kinase A metabolism, Aurora Kinase B antagonists & inhibitors, Aurora Kinase B chemistry, Aurora Kinase B metabolism, Binding, Competitive drug effects, Cell Cycle drug effects, Cell Death drug effects, Disease Progression, Dose-Response Relationship, Drug, Felodipine chemistry, Felodipine pharmacology, HeLa Cells, Humans, Kinetics, Mice, Mice, Nude, Neoplasms pathology, Reproducibility of Results, Spindle Poles drug effects, Spindle Poles metabolism, Surface Properties, Drug Discovery methods, Molecular Dynamics Simulation, Protein Kinase Inhibitors chemistry, Protein Kinase Inhibitors pharmacology, Spectrum Analysis, Raman
- Abstract
We demonstrate the use of surface-enhanced Raman spectroscopy (SERS) as an excellent tool for identifying the binding site of small molecules on a therapeutically important protein. As an example, we show the specific binding of the common antihypertension drug felodipine to the oncogenic Aurora A kinase protein via hydrogen bonding interactions with Tyr-212 residue to specifically inhibit its activity. Based on SERS studies, molecular docking, molecular dynamics simulation, biochemical assays, and point mutation-based validation, we demonstrate the surface-binding mode of this molecule in two similar hydrophobic pockets in the Aurora A kinase. These binding pockets comprise the same unique hydrophobic patches that may aid in distinguishing human Aurora A versus human Aurora B kinase in vivo. The application of SERS to identify the specific interactions between small molecules and therapeutically important proteins by differentiating competitive and noncompetitive inhibition demonstrates its ability as a complementary technique. We also present felodipine as a specific inhibitor for oncogenic Aurora A kinase. Felodipine retards the rate of tumor progression in a xenografted nude mice model. This study reveals a potential surface pocket that may be useful for developing small molecules by selectively targeting the Aurora family kinases.
- Published
- 2014
- Full Text
- View/download PDF
17. Segmentation and volumetric analysis of the caudate nucleus in Alzheimer's disease.
- Author
-
Jiji S, Smitha KA, Gupta AK, Pillai VP, and Jayasree RS
- Subjects
- Aged, Aged, 80 and over, Female, Humans, Image Enhancement methods, Male, Middle Aged, Observer Variation, Organ Size, Reproducibility of Results, Sensitivity and Specificity, Algorithms, Alzheimer Disease pathology, Caudate Nucleus pathology, Image Interpretation, Computer-Assisted methods, Imaging, Three-Dimensional methods, Magnetic Resonance Imaging methods, Pattern Recognition, Automated methods
- Abstract
Objectives: A quantitative volumetric analysis of caudate nucleus can provide valuable information in early diagnosis and prognosis of patients with Alzheimer's diseases (AD). Purpose of the study is to estimate the volume of segmented caudate nucleus from MR images and to correlate the variation in the segmented volume with respect to the total brain volume. We have also tried to evaluate the caudate nucleus atrophy with the age related atrophy of white matter (WM), gray matter (GM) and cerebrospinal fluid (CSF) in a group of Alzheimer's disease patients., Methods: 3D fast low angle shot (3D FLASH) brain MR images of 15 AD patients, 15 normal volunteers and 15 patients who had normally diagnosed MR images were included in the study. Brain tissue and caudate nuclei were segmented using the statistical parametric mapping package and a semi-automatic tool, respectively and the volumes were estimated. Volume of segmented caudate nucleus is correlated with respect to the total brain volume. Further, the caudate nucleus atrophy is estimated with the age related atrophy of WM, GM and CSF in a group of AD patients., Results: Significant reduction in the caudate volume of AD patients was observed compared to that of the normal volunteers. Statistical analysis also showed significant variation in the volume of GM and CSF of AD patients. Among the patients who had normal appearing brain, 33% showed significant changes in the caudate volume. We hypothesize that these changes can be considered as an indication of early AD., Conclusion: The method of volumetric analysis of brain structures is simple and effective way of early diagnosis of neurological disorders like Alzheimer's disease. We have illustrated this with the observed changes in the volume of caudate nucleus in a group of patients. A detailed study with more subjects will be useful in correlating these results for early diagnosis of AD., (Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.