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The hydrological variability of intermittent streams means that the spatial distribution of dry-season aquatic refuges within river networks and the temporal dynamics of hydrological connectivity between them are critical for the persistence of aquatic biodiversity. Here, a new approach is demonstrated to identify surface water bodies as priority refuges for efficient conservation management of freshwater biodiversity in intermittent stream networks. Recently developed models of surface water extent and daily streamflow were used to represent spatio-temporal variations in hydrological connectivity and surface water persistence within river networks of eastern Australia over a 107-yr period. Using this information, systematic conservation planning was applied to prioritize aquatic areas for conservation of 25 fish species under two scenarios. One scenario identified priority refuges to complement those already occurring in protected areas, whereas the other did not consider protected area status. The priority networks identified concentrated on the main stems of river catchments where surface water was more likely to be persistent and aquatic refuges were more likely to be connected, but also included headwaters for rare fish species. All three set conservation targets for the 25 fish species can be met in the best solution of priority networks. Although the second scenario achieved the targets with a smaller size of priority network overall, it required more new aquatic refuges and was thus less efficient than the first scenario. The newly developed datasets are useful for freshwater conservation prioritization because they account for hydrological variability of intermittent streams. The systematic prioritization approach applied is transferable to other regions and freshwater taxa to identify aquatic refuges for biodiversity conservation within intermittent stream systems.

Human activities have increasingly impacted rivers globally and influence environmental factors at multiple scales: proximal factors (e.g., light and nutrients) and distal controls (e.g., riparian cover and forest area in the basin) that affect benthic metabolism or algal assemblage structure. Function and structure have been studied separately and thus the linkage between them is not well understood. Furthermore, how much of the variability of benthic metabolism can be explained by changes in the environmental variables is inconclusive. We measured the structural and metabolism of epilithic algae in streams across gradients of catchment forest cover (3.5 to 88.6%) and riparian zone canopy cover (0 to 91.0%) in South East Queensland, Australia. Overall net daily metabolism (NDM) on cobbles was positive (gross primary production, GPP exceeded respiration, R) for all but three of the 34 sites. Chl a biomass of benthic algae on cobbles ranged from 1.37 to 178.05 mg m−2. Shaded streams had the highest percentage of diatoms (95.4%), while the least shaded streams were dominated by cyanobacteria (82.2%). Partial least squares (PLS) regression modeling showed that most of the variation in GPP, R, and NDM was explained by light intensity (photosynthetic photon flux density, PPFD), phosphorus concentration in water, water temperature, and the percentage of mid-dense forest upstream of the site. Path analysis (structural equation modeling, SEM) indicated that, as a surrogate for metabolism, diatom (Bacillariophyta) density was the best predictor of GPP and NDM when we assessed the environmental process in the streams. In comparison, Chl a, which has been traditionally used as a surrogate for measurements of GPP or NDM, performed well only when the percentage of diatoms in the epilithic algal community exceeded 75%. Our results also indicated that both the structure and function of benthic algal communities were sensitive to anthropogenic modifications, including riparian vegetation and forest cover in the catchment in river ecosystems.

Coastal wetlands are essential for regulating the global carbon budget through soil carbon sequestration and greenhouse gas (GHG – CO2, CH4, and N2O) fluxes. The conversion of coastal wetlands to agricultural land alters these fluxes' magnitude and direction (uptake/release). However, the extent and drivers of change of GHG fluxes are still unknown for many tropical regions. We measured soil GHG fluxes from three natural coastal wetlands – mangroves, salt marsh, and freshwater tidal forests – and two alternative agricultural land uses – sugarcane farming and pastures for cattle grazing (ponded and dry conditions). We assessed variations throughout different climatic conditions (dry–cool, dry–hot, and wet–hot) within 2 years of measurements (2018–2020) in tropical Australia. The wet pasture had by far the highest CH4 emissions with 1231±386 mgm-2d-1, which were 200-fold higher than any other site. Dry pastures and sugarcane were the highest emitters of N2O with 55±9 mgm-2d-1 (wet–hot period) and 11±3 mgm-2d-1 (hot-dry period, coinciding with fertilisation), respectively. Dry pastures were also the highest emitters of CO2 with 20±1 gm-2d-1 (wet–hot period). The three coastal wetlands measured had lower emissions, with salt marsh uptake of -0.55±0.23 and -1.19±0.08 gm-2d-1 of N2O and CO2, respectively, during the dry–hot period. During the sampled period, sugarcane and pastures had higher total cumulative soil GHG emissions (CH4+N2O) of 7142 and 56 124 CO2-eqkgha-1yr-1 compared to coastal wetlands with 144 to 884 CO2-eqkgha-1yr-1 (where CO2-eq is CO2 equivalent). Restoring unproductive sugarcane land or pastures (especially ponded ones) to coastal wetlands could provide significant GHG mitigation.

Length–mass relationships for macroinvertebrates are used in many ecological studies; however, few length–mass relationships are available for Australian freshwater macroinvertebrates. In this study, we generated 22 new length–mass relationships from 2148 specimens spread across four orders, nine families, three subfamilies, 12 genera and two species. We also qualitatively compare our length–mass equations with others from Australia, New Zealand, North America and Europe.

Anthropogenic changes to river flows can alter hydrological connectivity and cues necessary for the movement of fish to complete their life cycles. Quantifying flow-related movement ecology of fish and understanding how this varies between species and river systems is important for effective environmental flow management. This study aimed to determine hydroecological factors that influence fish movements in an unregulated, perennial river and to compare these findings to fish from regulated river systems. Broad-scale movements of the endangered Maccullochella ikei and Tandanus tandanus were recorded over 3 years in the unregulated, perennial Nymboida River, Australia. The limited movements both species exhibited were infrequent and over short distances. Although M. ikei movements appeared mostly unrelated to environmental changes, T. tandanus moved on flow pulse peaks and were more likely to move during the breeding season. These findings contrast with previous studies of the same or similar species in differing flow regimes, suggesting that fish in perennial, highly connected rivers may not need to move as frequently as those in more regulated or intermittent systems. Should these disparate behaviours be present in other species occurring among contrasting flow regimes, it will be challenging to define generalisable environmental flow rules to inform river management.

Supporting the recovery of large carnivores is a popular yet challenging endeavour. Estuarine crocodiles in Australia are a large carnivore conservation success story, with the population having extensively recovered from past heavy exploitation. Here, we explored if dietary changes had accompanied this large population recovery by comparing the isotopes δ 13 C and δ 15 N in bones of crocodiles sampled 40 to 55 years ago (small population) with bones from contemporary individuals (large population). We found that δ 13 C and δ 15 N values were significantly lower in contemporary crocodiles than in the historical cohort, inferring a shift in prey preference away from marine and into terrestrial food webs. We propose that an increase in intraspecific competition within the recovering crocodile population, alongside an increased abundance of feral ungulates occupying the floodplains, may have resulted in the crocodile population shifting to feed predominantly upon terrestrial food sources. The number of feral pigs consumed to sustain and grow crocodile biomass may help suppress pig population growth and increase the flow of terrestrially derived nutrients into aquatic ecosystems. The study highlights the significance of prey availability in contributing to large carnivore population recovery.

Accurately accounting for flows of energy through food webs is challenging because of the spatial and temporal variability associated with energy production and consumption. Wet–dry tropical rivers have a highly seasonal discharge regime where wet season flows allow access to energy sources (inundated wetlands) that are not available during the dry season when aquatic consumers are confined to disconnected waterholes. We combined measures of fish community biomass with previously published feeding guild specific stable isotope analyses to explore how opposing wet- and dry-season habitat templates influence spatial and temporal trends in the sources of energy supporting fish biomass throughout a river network in the wet–dry tropics of northern Australia. Accounting for the relative contribution of each feeding guild to fish community biomass was a critical component of our analyses, as a single feeding guild (invertivore/piscivore) influenced spatial and temporal patterns in the sources of energy supporting overall fish biomass. During the early dry season, the reliance of fish communities on autochthonous sources of energy (periphyton) decreased from the upper to lower reaches of the river network, which correlates with increasing floodplain area and wet season inundation times. These patterns disappeared by the late dry season as fish in both upper and lower reaches became increasingly reliant on autochthonous sources produced within waterholes over the course of the dry season, indicating that the large wet-season gains in fish biomass are maintained through the dry season by energy produced within waterhole refuges. Collectively these results indicate that a combination of autochthonous and allochthonous sources of energy work in unison to support fish community biomass throughout the Mitchell River catchment and that access to these sources of energy is dictated by seasonal patterns in discharge interacting with spatial variability in river geomorphology (channel geometry and floodplain area). Many rivers are experiencing decreased flows due to water resource development and more frequent and severe droughts. Thus, we suggest our study provides insight into how changes in discharge regime could influence food web energetics throughout river networks.

It is often assumed that invertebrate consumers in small tropical streams are dependent on allochthonous sources, although recent studies indicate that algae can form the base of food webs in tropical streams. Fish in tropical streams can feed across several trophic levels and the origin and path of energy and nutrient flow is uncertain for many species. We collected fish, insects, periphyton, and leaf litter from 20 streams across four Atlantic Forest catchments. We analysed stomach contents of fish to define trophic guild and fish dietary trophic position. We also analysed stable isotopes of carbon and nitrogen of fish and their resources to identify the main basal resources of the food web and to estimate trophic positions and identify the path of energy flow. We found that autochthonous sources were the primary resource base for fish communities. Trophic positions estimated from diet and isotopes were similar and correlated for insectivore and algivore–insectivore fish, but not for algivore–detritivore or omnivore fish. Using path analysis, fish classified as algivore–detritivores appear to have derived their biomass through a diet of primary consumer insects and periphytic algae and thus, are more likely to play a trophic role as algivore–insectivores in these streams. However, omnivores probably derived much of their biomass from aquatic insects. Our findings support other studies of tropical systems in which the main basal resource is autochthonous, even in small streams. We also show that the assignment to a specific trophic guild for some fish species, based on gut contents, does not reflect what they assimilate into their bodies. In some species, food sources that are uncommon can make a disproportionately important contribution to their biomass. This study affirms the important role of inconspicuous algal resources in aquatic food webs, even in small forested streams, and demonstrates the effectiveness of taking a combined approach of diet analysis, isotopic tracing, and modelling to resolve food web pathways where the level of omnivory is high.

Freshwater ecosystems are highly vulnerable to global warming because 1) their chief drivers, water quality and flow regimes, are highly sensitive to atmospheric warming, and 2) they are already extremely threatened by a wide range of interacting anthropogenic pressures. Even relatively modest global warming of 1.5°C poses a considerable threat to freshwater ecosystems and the many critical services these provide to people. Shifts in the composition and function of freshwater ecosystems are widely anticipated with adverse consequences for ecosystem services, including those underpinning water and food security. While the extent and severity of effects is likely to be significantly reduced if global warming is limited to 1.5°C, concerted efforts to implement widely recognised priorities for policy and management are required to mitigate unavoidable impacts and reduce the likelihood of perverse outcomes of climate mitigation and adaptation efforts in other sectors—all of which rely on fresh water supply. Freshwater ecosystems and their services, including provision of fresh water, must therefore be considered first and foremost when developing and implementing any climate action.

Many organisms living in temporary streams rely on remnant surface water to survive during extended dry periods and recolonize newly established habitats when flow resumes. However, research on the spatio‐temporal variations of surface water extent for entire river networks is scarce. In this study, we first present a new field method for rapid surface water assessment. Next, we develop predictive models relating observed water extent to environmental attributes at a large number of surveyed stream segments (n=241) in eastern Australian coastal catchments. We use the models to predict daily variations in surface water dynamics throughout entire river networks over the period of 1911‐2017, based on available long‐term environmental attributes influencing hydrological processes. We find descriptors of surface water extent can be accurately predicted based on robust internal and external validations. Environmental predictor variables representing water gaining processes were more important in predicting surface water extent than variables representing water losses. Simulated long‐term variations in surface water extent were highly dynamic through space and time, particularly in inland streams, which were predicted to be the driest on average. Total stream length with surface water ranged from 8,974 to 13,742 km across the study period. Our study presents a novel and practical approach to quantifying and predicting variations in surface water extent, with potential applicability to other parts of the world. The simulated surface water extent through space and time can be used to identify and prioritize potential aquatic refuge areas that sustain aquatic biodiversity in river networks during extended dry periods.

Systematic conservation planning has contributed to the spatial design of reserve networks in river ecosystems by recognizing the importance of maintaining longitudinal connectivity. In the complex and dynamic landscapes of river-floodplain systems, however, it is still challenging to account for the longitudinal and, especially, lateral connections that are relevant to their management. Adequate protection of floodplain ecosystems requires accounting for spatio-temporal connectivity among all waterbodies that compose the riverine landscape. In this study we present a new framework to account for both within-floodplain (lateral) and longitudinal river connectivity in freshwater systematic conservation planning. We run four prioritization scenarios comparing different rules of connectivity for the rivers and floodplains of the entire Amazon River basin. The scenarios involved the comparison of local protection only versus integrated upstream protection for floodplains. The spatial framework combined two types of planning units, with connectivity between them assessed using two distance-based measures for within-floodplain and upstream-downstream connectivity. We found different levels of protection afforded to floodplain wetlands across scenarios. The scenario including only within-floodplain connectivity failed to detect the propagation of impacts from the surroundings and upstream catchment. In contrast, the scenario that integrated within-floodplain and longitudinal river connectivity agglomerated subcatchments around the priority wetlands, generating catchment-integrated units that efficiently reduced impacts. We also demonstrate that the integrated connectivity can be manipulated to meet different conservation objectives. The new approach presented here offers more ecologically meaningful protection to floodplains because it considers local wetland boundaries and connectivity within wetland complexes together with connectivity with the upstream landscape. This framework can be applied to integrated wetland conservation and management throughout the world and provide a valuable tool to safeguard the ecosystem functioning of complex river-floodplain mosaics.

Translocation of individuals is a widely used tool in the conservation of threatened species. The movement behaviours of translocated individuals in their new environment are a key factor that can influence translocation success (i.e. survival and reproduction). In this study, eel‐tailed catfish (Tandanus tandanus ) and Murray cod (Maccullochella peelii ) movements were monitored using fine‐scale acoustic telemetry over a 5‐month period in two lowland rivers in eastern Australia. Fine‐scale movement and habitat selection were compared among translocated lacustrine and resident riverine T. tandanus and between species. We found no difference in fine‐scale movement behaviours between translocated and resident T. tandanus ; however, there was some variation in movement response to environmental variation between species. In contrast, habitat selection varied not only between the two species, but also between resident and translocated T. tandanus individuals. Notably, activity was significantly lower in the first day after release compared to the remainder of the study period. Although T. tandanus translocated from a reservoir had never experienced the environmental fluctuations of a riverine system, individuals still responded in the same way as resident riverine fish, suggesting an innate behavioural response. However, this was not the case for habitat selection, where translocated individuals preferred habitats more common in their source population's lacustrine environment. The findings of this study are important in guiding future conservation efforts involving the translocation of wild‐caught fish, primarily the importance of the suitable habitat at the release site to ensure the success and persistence of translocated populations.

In many wetlands the timing and duration of inundation determine ecological characteristics and the provision of ecosystem services; however, wetland conservation decisions often rely on static maps of wetland boundaries that do not capture their dynamic hydrological variability and connectivity. The Amazon River basin contains some of the world's most extensive wetlands, many of which are floodplains where seasonal flood pulses result in a temporally varying inundation area and hydrological connectivity with river systems. This study classified Amazon wetlands according to the timing and duration (months per year) of inundation detected by remote sensing, and also investigated the contribution of precipitation regimes in affecting wetland distribution and hydrological dynamics. Permanently inundated wetlands account for the largest area and are mainly floodplains located in the lowlands of the catchment. Seasonally inundated wetlands varied greatly in the duration of inundation over the course of the year, ranging from 1 to 9 months. Distinct seasonal timing was detected among the large wetland complexes, reflecting rainfall regimes as well as time lags for drainage and drying. For example, inundation in the extensive Llanos de Moxos region of the southern Amazon was protracted and lasted well after the rainy season, compared with the Roraima region of the northern Amazon, where inundation was shorter and tracked the rainy season. The integration of inundation dynamics into wetland classification captures regional differences in timing and duration of inundation in the major wetlands of the basin that should be considered for conservation planning and other ecological applications. This information can aid regional wetland management and planning, especially with regards to minimizing the effects of dam and waterway construction that can directly affect the natural wetland dynamics. The use of global remotely sensed inundation data makes this approach easily transferable to other large tropical wetlands.

Closely related species may have different patterns of distribution and spatial population structure in common landscapes, which can have implications for conservation of the species if they are vulnerable. The Australian mountain galaxias species complex has recently been split into 15 described species, 11 of which are threatened. In this study, we assessed the distribution and landscape genetic structure of two mountain galaxias species (Galaxias olidus and Galaxias oliros) in the Goulburn–Broken catchment (Murray–Darling Basin) in relation to hydrographic descriptors of river terrain, network and hydrology. We also assessed small‐scale population structure in juvenile G. oliros in tributary streams of the Goulburn River (the Granite Creeks). Analyses of distribution revealed that G. olidus mostly occurs in smaller streams at high elevations with steep valley slopes and high stream gradients downstream, whereas G. oliros mostly occurs in larger downstream waterways with higher magnitude and variability of stream flow. Population genetic structure in G. olidus was much greater than for G. oliros, with 17 of the 19 sampled locations resolved as genetically distinct populations for G. olidus, but only a single population revealed for G. oliros. Results for both species did not reflect the expectations of the stream hierarchy model or isolation‐by‐distance model. However, small‐scale spatial population structure in juvenile G. oliros in the Granite Creeks reflected the expectations of both stream hierarchy and isolation‐by‐distance models, suggesting that population structure of juveniles of this species reflects some level of spatial aggregation of closely related individuals that probably diminishes as the population ages. Higher landscape genetic structure in G. olidus was correlated with steeper stream and valley slopes, whereas no population genetic correlations were significant for G. oliros. Genetic diversity in G. olidus was higher in areas of greater hydrological variability, suggesting that populations in hydrologically variable areas function as a metapopulation and have a more diverse gene pool than populations in areas with lower hydrological variability. In contrast, genetic diversity in G. olidus was lower in higher elevation areas with steep valley slopes, suggesting that smaller but more stable populations occur in high elevation streams with high perenniality and low interannual variability of flows. Our results are consistent with other studies that highlight the importance of supporting natural hydrological regimes and natural patterns of hydrological connectivity for conservation of vulnerable freshwater fish.

The economic development-environmental protection dichotomy is an out-dated construct. A 21st century approach to the world's water problems is progressively being developed by researchers and practitioners, who are combining traditional and ecosystem-based engineering systems to yield cost-effective solutions. Given the continuing and widespread loss of ecological services and functions, water security in a multi-generational, SDG context requires a meaningful, global commitment to redirect the current downward trajectory in both (i) the state of the world's ecosystems and the services they provide to society, and (ii) our collective level of stewardship of these important resources. Achieving sustainable water security will require overcoming strategic challenges related to protected areas, ecosystem-based solutions research, water observatories and expanded technical readiness. It also needs to address other limitations and demands related to water infrastructure, economies, human settlements and water quality, sanitation and health. Four globally significant actions can support the adoption of more efficient and sustainable water futures: green infrastructure watershed banks, an accelerated global research and solutions program, a new global water-ecosystem services observatory, and an improved technical capacity/workforce development initiative. Finally, the engagement of relevant stakeholders from academia, government, the private sector and civil society are needed to ensure that humankind will be able to meet its water security goals and commitments, including those expressed in the sustainable development agenda.

Keeping the Earth system in a stable and resilient state, to safeguard Earth's life support systems while ensuring that Earth's benefits, risks, and related responsibilities are equitably shared, constitutes the grand challenge for human development in the Anthropocene. Here, we describe a framework that the recently formed Earth Commission will use to define and quantify target ranges for a “safe and just corridor” that meets these goals. Although “safe” and “just” Earth system targets are interrelated, we see safe as primarily referring to a stable Earth system and just targets as being associated with meeting human needs and reducing exposure to risks. To align safe and just dimensions, we propose to address the equity dimensions of each safe target for Earth system regulating systems and processes. The more stringent of the safe or just target ranges then defines the corridor. Identifying levers of social transformation aimed at meeting the safe and just targets and challenges associated with translating the corridor to actors at multiple scales present scope for future work.

Tidal coastal wetlands are significant to the global carbon budgets through carbon sequestration and greenhouse gas (GHG; CO2, CH4 and N2O) emissions. The conversion of tidal coastal wetlands to agriculture land alters soil processes changing GHG emissions. The GHG emissions associated with land-use change are important for restoration strategies that rely upon financial incentives such as carbon credits. We measured GHG fluxes from mangroves, saltmarsh and freshwater tidal forest and their alternative agricultural lands including sugarcane and ponded pastures. We investigated seasonal variations between June 2018 and February 2020 in tropical. Australia. The wet ponded pasture had by far the highest CH4 emissions with 1,231 ± 386 mg m−2 d−1, which were 200-fold higher than any other land use. Agricultural lands were the most significant sources of N2O emissions with 55 ± 9 mg m−2 d−1 from dry ponded pasture (wet-hot period) and 11 ± 3 mg m−2 d−1 from sugar cane (hot-dry period), coinciding with fertilisation. The N2O fluxes from the tidal coastal wetlands ranged between −0.55 ± 0.23 and 2.76 ± 0.45 mg m−2 d−1 throughout the study period. The highest CO2 fluxes of 20 ± 1 g m−2 d−1 were from the dry ponded pasture during the wet-hot period, while the saltmarsh had the lowest CO2 fluxes having an uptake of −1.19 ± 0.08 g m−2 d−1 in the dry-hot period. Overall, agricultural lands had significantly higher total cumulative GHG emissions (CH4 + N2O) of 7142 to 56,124 CO2-eq kg ha−1 y−1 compared to those of any type of tidal coastal wetlands, which ranged between 144 and 884 CO2-eq kg ha−1 y−1. Converting agricultural land, particularly wet ponded pasture, to tidal coastal wetlands could provide large GHG mitigation gains and potential financial incentives.

There is growing recognition of the importance of food quality over quantity for aquatic consumers. In streams and rivers, most previous studies considered this primarily in terms of the quality of terrestrial leaf litter and importance of microbial conditioning. However, many recent studies suggest that algae are a more nutritional food source for riverine consumers than leaf litter. To date, few studies have quantified longitudinal shifts in the nutritional quality of basal food resources in river ecosystems and how these may affect consumers. We conducted a field investigation in a subalpine river ecosystem in Austria to investigate longitudinal variations in diet quality of basal food sources (submerged leaves and periphyton) and diet source dependence of stream consumers (invertebrate grazers, shredders, filterers and predators, and fish). Fatty acid (FA) profiles of basal food sources and their consumers were measured. Our results indicate systematic differences between the FA profiles of terrestrial leaves and aquatic biota, that is periphyton, invertebrates and fish. Submerged leaves contained very low proportions of long-chain polyunsaturated fatty acids (LC-PUFAs), which were conversely rich in aquatic biota. While the FA composition of submerged leaves remained similar among sites, the LC-PUFAs of periphyton increased longitudinally, which was associated with increasing nutrients from upstream to downstream. Longitudinal variations in periphyton LC-PUFAs were reflected in the LC-PUFAs of invertebrate grazers and shredders, and further tracked by invertebrate predators and fish. However, brown trout Salmo trutta contained a large proportion of docosahexaenoic acid (DHA, 22:6ω3), a LC-PUFA almost entirely missing in basal sources and invertebrates. The fish accumulated eicosapentaenoic acid (EPA, 20:5ω3) from invertebrate prey and may use this FA to synthesize DHA. Our results provide a nutritional perspective for river food web studies, emphasizing the importance of algal resources to consumer somatic growth and the need to account for the longitudinal shifts in the quality of these basal resources.

Despite providing considerable benefits to society, dams and weirs threaten riverine ecosystems by disrupting movement and migration of aquatic animals and degrading riverine habitats. Whilst the ecological impacts of large dams are well studied, the ecological effects of low-head weirs that are periodically drowned out by high flows are less well-understood. Here we examine the effects of a low-head weir on fine- and broad-scale movements, habitat use, and breeding behaviour of three species of native freshwater fish in the Nymboida River in coastal eastern Australia. Acoustic telemetry revealed that eastern freshwater cod (Maccullochella ikei) and eel-tailed catfish (Tandanus tandanus) made few large-scale movements, but Australian bass (Percalates novemaculeata) upstream of the weir were significantly more mobile than those below the weir. Within the weir pool, all three species displayed distinctive patterns in fine-scale movement behaviour that were likely related the deeper lentic environment created by the weir. No individuals of any species crossed the weir during the study period. Tandanus tandanus nesting behaviour varied greatly above and below the weir, where individuals in the more lentic upstream environment nested in potentially sub-optimal habitats. Our results demonstrate the potential effects of low-head weirs on movement and behaviour of freshwater fishes.

Despite their limited spatial extent, freshwater ecosystems host remarkable biodiversity, including one-third of all vertebrate species. This biodiversity is declining dramatically: Globally, wetlands are vanishing three times faster than forests, and freshwater vertebrate populations have fallen more than twice as steeply as terrestrial or marine populations. Threats to freshwater biodiversity are well documented but coordinated action to reverse the decline is lacking. We present an Emergency Recovery Plan to bend the curve of freshwater biodiversity loss. Priority actions include accelerating implementation of environmental flows; improving water quality; protecting and restoring critical habitats; managing the exploitation of freshwater ecosystem resources, especially species and riverine aggregates; preventing and controlling nonnative species invasions; and safeguarding and restoring river connectivity. We recommend adjustments to targets and indicators for the Convention on Biological Diversity and the Sustainable Development Goals and roles for national and international state and nonstate actors.

River channel drying caused by intermittent stream flow is a widely-recognized factor shaping stream ecosystems. There is a strong need to quantify the distribution of intermittent streams across catchments to inform management. However, observational gauge networks provide only point estimates of streamflow variation. Increasingly, this limitation is being overcome through the use of spatially contiguous estimates of the terrestrial water-balance, which can also assist in estimating runoff and streamflow at large-spatial scales. Here we proposed an approach to quantifying spatial and temporal variation in monthly flow intermittency throughout river networks in eastern Australia. We aggregated gridded (5 × 5 km) monthly water-balance data with a hierarchically nested catchment dataset to simulate catchment runoff accumulation throughout river networks from 1900 to 2016. We also predicted zero flow duration for the entire river network by developing a robust predictive model relating measured zero flow duration (% months) to environmental predictor variables (based on 43 stream gauges). We then combined these datasets by using the predicted zero flow duration from the regression model to determine appropriate ‘zero’ flow thresholds for the modelled discharge data, which varied spatially across the catchments examined. Finally, based on modelled discharge data and identified actual zero flow thresholds, we derived summary metrics describing flow intermittency across the catchment (mean flow duration and coefficient-of-variation in flow permanence from 1900 to 2016). We also classified the relative degree of flow intermittency annually to characterise temporal variation in flow intermittency. Results showed that the degree of flow intermittency varied substantially across streams in eastern Australia, ranging from perennial streams flowing permanently (11–12 months) to strongly intermittent streams flowing 4 months or less of year. Results also showed that the temporal extent of flow intermittency varied dramatically inter-annually from 1900 to 2016, with the proportion of intermittent (weakly and strongly intermittent) streams ranging in length from 3% to nearly 100% of the river network, but there was no evidence of an increasing trend towards flow intermittency over this period. Our approach to generating spatially explicit and catchment-wide estimates of streamflow intermittency can facilitate improved ecological understanding and management of intermittent streams in Australia and around the world.

Phenological responses to climate change have been widely observed and have profound and lasting effects on ecosystems and biodiversity. However, compared to terrestrial ecosystems, the long-term effects of climate change on species' phenology are poorly understood in aquatic ecosystems. Understanding the long-term changes in fish reproductive phenology is essential for predicting population dynamics and for informing management strategies, but is currently hampered by the requirement for intensive field observations and larval identification. In this study, a very low-frequency sampling of juveniles and adults combined with otolith measurements (long axis length of the first annulus; LAFA) of an endemic Tibetan Plateau fish (Gymnocypris selincuoensis) was used to examine changes in reproductive phenology associated with climate changes from the 1970s to 2000s. Assigning individual fish to their appropriate calendar year class was assisted by dendrochronological methods (crossdating). The results demonstrated that LAFA was significantly and positively associated with temperature and growing season length. To separate the effects of temperature and the growing season length on LAFA growth, measurements of larval otoliths from different sites were conducted and revealed that daily increment additions were the main contributor (46.3%), while temperature contributed less (12.0%). Using constructed water-air temperature relationships and historical air temperature records, we found that the reproductive phenology of G. selincuoensis was strongly advanced in the spring during the 1970s and 1990s, while the increased growing season length in the 2000s was mainly due to a delayed onset of winter. The reproductive phenology of G. selincuoensis advanced 2.9 days per decade on average from the 1970s to 2000s, and may have effects on recruitment success and population dynamics of this species and other biota in the ecosystem via the food web. The methods used in this study are applicable for studying reproductive phenological changes across a wide range of species and ecosystems.

Longitudinal and lateral connectivity is important for mobile aquatic species in rivers for reproductive migrations, recruitment, gene flow and access to food resources across habitat types. Water resource developments such as dams and levees may disrupt these connections, causing river fragmentation and loss of access to highly productive habitats such as floodplain wetlands. We used sulfur stable isotopes as a tracer to estimate patterns of fish movement in an unregulated river in tropical northern Australia, taking advantage of observed spatial variation in sulfur isotope values of their food resources across the catchment. We also modelled the flow and barrier related impacts of potential dam development scenarios on fish movement. Fish with isotope values significantly different from local prey values were determined to be migrants. In the ‘no dams’ scenario, movement varied among fish species (0–44% migrant fish within species where n > 5) and sites (0–40% migrant fish within sites where n > 5), and immigration was higher in more connected sites. Impacts of water resource development on fish movement varied between dam scenarios, with predictions that a dam on the main channel of the Mitchell River would have the highest impact of the three individual dam scenarios. This study provides critical information on how flow-mediated connectivity supports patterns of fish community movement in an unregulated river system. The generic quantitative approach of combining tracers of fish movement with connectivity modelling provides a powerful predictive tool. While we used sulfur stable isotopes to estimate fish movement, our approach can be used with other tracers of movement such as otoliths and acoustic telemetry, making it widely applicable to guide sustainable development in other river systems.

Sustained water level drawdown followed by rewetting has the potential to shift macrophytes from a nutrient sink to a source, but the fate of macrophyte-derived nutrients after rewetting is not well understood. We investigated the fate of released nitrogen (N) from isotopically labeled macrophyte litter over a 4-week period after rewetting. We used three treatments: (1) different species in the litter (invasive Cabomba caroliniana vs. native Hydrilla verticillata); (2) sediment desiccation history (“dried then rewetted” vs. “constantly wet”); (3) living macrophytes (presence vs. absence). Our results showed that the Cabomba litter treatment had a significantly higher percentage of macrophyte-derived 15N in the dissolved fraction of the water column and assimilated by phytoplankton (higher chlorophyll a concentrations), compared to the Hydrilla litter. The treatments with sediment desiccation also had a significantly higher percentage of 15N in the dissolved fraction and used by phytoplankton after rewetting, but less in the sediment, compared to the constantly wet treatment. The presence of living macrophytes partially reduced the 15N increase in the water column and/or sediment, but the scale of the effect was species- and biomass-dependent. Our study showed that sediment pre-desiccation changed the fate of macrophyte-derived 15N after rewetting, increasing the impact on water quality. This was further exacerbated by the presence of litter from an invasive species. This study highlights the need to manage water levels to maintain healthy macrophyte beds and thereby addressing water quality issues in lakes and reservoirs.

1. Streams and rivers provide crucial sources of long-chain polyunsaturated fatty acids (LC-PUFA, a subset of PUFA with ≥20 C in their acyl chains) for freshwater and terrestrial animals. LC-PUFA are primarily produced by particular algal taxa and are subsequently transferred to fish and higher consumers, including humans. Although research on the trophic transfer of LC-PUFA in streams is very limited, studies on the PUFA composition of organisms at various trophic levels within stream food webs are well documented. Here, we systematically analyze the literature to synthesise LC-PUFA distribution and retention in stream ecosystems. 2. In general, stream food webs are highly enriched in omega-3 LC-PUFA, in particular eicosapentaenoic acid (EPA, 20:5n-3) and docosahexaenoic acid (DHA, 22:6n-3). Algae from temperate rivers had more EPA compared with algae from subtropical rivers. Stream invertebrates from both temperate and subtropical rivers preferentially retain algal EPA and their PUFA tend to vary with algal PUFA. Invertebrates may be capable of regulating their fatty acid (FA) composition, but this ability is limited, to the extent that they must obtain physiologically important LC-PUFA primarily from algae. 3. DHA is selectively and highly retained in all fish taxa irrespective of their feeding sites (i.e. temperate or subtropical rivers). However, DHA content is variable among stream fish taxa and is likely linked to resource utilisation and their endogenous metabolism. Freshwater salmonids have a very high DHA content, which suggests they preferentially retain this FA or biosynthesise it from EPA. The PUFA profiles of other fish taxa more closely reflect their dietary PUFA supply. However, so far very few studies have considered the differences in the PUFA biosynthesis of fish taxa in rivers or compared the dietary PUFA effect on different fish taxa. 4. The supply of LC-PUFA from streams and rivers is known to be affected by altered light availability, greater nutrient inputs and other anthropogenic activities, and any decrease in algal LC-PUFA production will negatively affect the consumers that are nutritionally dependent on these molecules. Further investigations are needed to understand how environmental changes affect LC-PUFA production and retention in stream ecosystems, and how to protect streams from threats to this essential ecosystem service.

The structure of food webs may be strongly influenced by the distribution of top predators in space and time. The Amazon biome is the only region in the world where four alligatorid species are known to occur in sympatry, and they attain high densities in some regions. As top predators with a diverse range of prey species occupying different trophic levels, their impact upon food webs should be substantial, but the degree to which crocodilians differ in their food sources, and potentially avoid competitive exclusion where they occur syntopically is not well understood. Although most crocodilians are considered generalist opportunistic predators that feed on any source of protein available in the environment, Amazonian crocodilians show broad differences in the proportions of prey items they consume. It is believed that these differences may in part reflect habitat use, but it is unknown to what extent they represent interspecific differences in prey preferences or are a direct function of habitat selection. Stable carbon isotope data (δ13C) of crocodilians and their potential prey were used to assess differences in reliance on terrestrial versus aquatic resources. These data were then placed in a spatial context using classified maps that reflect habitat types (headwater streams, mid-order flooded-forest streams and varzea floodplains) to elucidate whether dietary differences are explained by habitat selection or are more likely a reflection of prey preferences. We found evidence for differences in types of basal resources supporting these crocodilians. Mean δ13C values were highest in Paleosuchus trigonatus (Schneider's dwarf caiman, −25.7 ± 1.2‰), intermediate in Caiman crocodilus (spectacled caiman, −27.4 ± 1.2‰) and Paleosuchus palpebrosus (Cuvier's dwarf caiman, −27.7 ± 1.1‰) and lowest in Melanosuchus niger (black caiman, −29.9 ± 1.3‰). A progressive decrease in δ13C values of crocodilian tissues occurred from headwaters to floodplains, which most likely reflects a progressive increase in autochthonous over allochthonous inputs in lower reaches of streams. The shift from terrestrial to aquatic resources sustaining these sympatric predators mirrors their spatial distribution along this ecotone. However, after taking into account the habitat in which pairs of syntopic individuals of distinct species occurred, significant differences in δ13C values suggest that P. trigonatus and P. palpebrosus have different prey bases. Thus, despite being opportunistic predators, our results show that differences in crocodilian diets likely result from prey preferences and not only from habitat selection. These findings suggest that some species of crocodilians may be less generalist than traditionally thought and their influence on terrestrial or aquatic food webs might be species specific.

Tropical floodplains are one of the most productive ecosystems on earth. Studies on floodplain productivity have primarily focused on trees and macrophytes, rather than algae, due to their greater biomass. However, epiphyton—algae and bacteria attached to the submerged portion of aquatic macrophytes—is a major source of energy in many tropical floodplains. Epiphyton productivity rates are unknown for most tropical floodplain wetlands, and spatial variability is not well understood. In this study, we measured primary productivity of epiphyton in Kakadu National Park in northern Australia. We estimated the relative contribution of epiphyton to aquatic production (epiphyton, + phytoplankton + macrophytes). We sampled sites dominated by different macrophyte structural types: vertical emerging grasses, horizontal emerging grasses, submerged macrophytes, and macrophytes with floating leaves. Epiphyton productivity was highly influenced by the structural type of the macrophyte. Highest potential productivity per weight was measured from epiphyton growing on macrophytes with floating leaves and horizontal grasses (1.52 ± 0.53 and 1.82 ± 0.61 mgC/dw g epiphyton/h, respectively) and lowest in submerged macrophytes and vertical grasses (0.57 ± 0.26 and 0.66 ± 0.47 mgC/dw g epiphyton/h, respectively). When considering the areal biomass of the macrophyte and the amount of epiphyton attached, epiphyton on horizontal grasses and submerged macrophytes had productivity values approximately ten times higher (45–219 mgC/m2/d) compared to those on vertical grasses and macrophytes with floating leaves (2–18 mgC/m2/d). Epiphyton contributed between 2 to 13 percent to the aquatic production of these tropical floodplain wetlands.

Article, 1. Many freshwater systems receive substantial inputs of terrestrial organic matter. Terrestrially derived dissolved organic carbon (t-DOC) inputs can modify light availability, the spatial distribution of primary production, heat, and oxygen in aquatic systems, as well as inorganic nutrient bioavailability. It is also well-established that some terrestrial inputs (such as invertebrates and fruits) provide highquality food resources for consumers in some systems. 2. In small to moderate-sized streams, leaf litter inputs average approximately three times greater than the autochthonous production. Conversely, in oligo/mesotrophic lakes algal production is typically five times greater than the available flux of allochthonous basal resources. 3. Terrestrial particulate organic carbon (t-POC) inputs to lakes and rivers are comprised of 80%–90% biochemically recalcitrant lignocellulose, which is highly resistant to enzymatic breakdown by animal consumers. Further, t-POC and heterotrophic bacteria lack essential biochemical compounds that are critical for rapid growth and reproduction in aquatic invertebrates and fishes. Several studies have directly shown that these resources have very low food quality for herbivorous zooplankton and benthic invertebrates. 4. Much of the nitrogen assimilated by stream consumers is probably of algal origin, even in systems where there appears to be a significant terrestrial carbon contribution. Amino acid stable isotope analyses for large river food webs indicate that most upper trophic level essential amino acids are derived from algae. Similarly profiles of essential fatty acids in consumers show a strong dependence on the algal food resources. 5. Primary production to respiration ratios are not a meaningful index to assess consumer allochthony because respiration represents an oxidised carbon flux that cannot be utilised by animal consumers. Rather, the relative importance of allochthonous subsidies for upper trophic level production should be addressed by considering the rates at which terrestrial and autochthonous resources are consumed and the growth efficiency supported by this food. 6. Ultimately, the biochemical composition of a particular basal resource, and not just its quantity or origin, determines how readily this material is incorporated into upper trophic level consumers. Because of its highly favourable biochemical composition and greater availability, we conclude that microalgal production supports most animal production in freshwater ecosystems., final draft, http://purl.org/eprint/status/PeerReviewed

Recent investigators have emphasized that food quality has greater importance than food quantity for herbivore somatic growth. Herbivore growth is thought to be regulated by light and nutrients through changes in food elemental ratios, but our knowledge of the mechanisms driving grazer growth in stream ecosystems is scarce. We manipulated light (through shading) and nutrients (fertilizer addition) in 3 headwater streams in southeastern Queensland, Australia, and measured the responses of natural grazer communities. The growth responses of Austrophlebioides and Helicopsyche to light and nutrients differed with their body size and periphyton food quality. Large larvae were more sensitive to increased light and nutrient availability than were small larvae. Light induced a significant negative effect on Austrophlebioides growth, and this impact increased with increasing nutrient addition. Nutrients had a pronounced positive effect on Helicopsyche growth regardless of light intensity. These responses r...

Algae are higher-quality food resources than allochthonous plant litter for stream invertebrates, in part, because of their higher content of polyunsaturated fatty acids (PUFAs). We tested the hypothesis that algal biofilms on the surfaces of leaf litter improve the nutritional quality of terrestrial inputs for invertebrate shredders. We used a laboratory feeding experiment with 2 light levels (open and shaded) and 2 nutrient regimes (ambient and enriched) to manipulate the algal biofilms that form on leaf surfaces (Lophostemon confertus). We assessed how these treatments affected the fatty acid (FA) composition of these biofilms and the somatic growth of a stream invertebrate shredder (Anisocentropus bicoloratus, Trichoptera) that feeds on the conditioned leaf litter. Shredders reached a significantly larger size when nutrients were added, and leaf mass loss was significantly greater in these treatments than in treatments without nutrients. Shredder growth was affected significantly by leaf PUFA ...

The Australian lungfish, Neoceratodus forsteri Krefft, 1870, is a threatened species whose long-term persistence is at risk due to land-use intensification, water resource development, and other human pressures. Changes to the hydrology of rivers has the potential to alter the availability of certain high-quality food resources for this species, that may impact recruitment success, and contribute to population declines. This study analysed the fatty acid (FA) composition of lungfish eggs and fin tissues from two locations upstream and downstream of a large dam in the Brisbane River. We tested the hypothesis that river impoundment and flow alteration associated with the dam have altered the dietary composition and the FA composition of important dietary items for N. forsteri which translates to the body tissues and eggs. The contribution of each food source was estimated with mixing models using carbon and nitrogen stable isotopes. The total FA content in lungfish fin and eggs was significantly higher in downstream sites compared to upstream. Few significant differences in FA contents of the nine potential lungfish food sources were found between sites upstream and downstream of the dam. Stable isotope analyses of lungfish fin tissues revealed the most likely food sources were gastropods, bivalves, and crustaceans, however their relative importance differed upstream and downstream of the dam. Collectively, these results indicate that the dam did not negatively affect food quality for lungfish downstream. The most likely mechanism for potential FA deficiency and subsequent impacts on recruitment success in N. forsteri would be due to changes to the availability of high-quality food sources. This study highlights the need for future research to determine whether the low FA contents we observed in lungfish, is a function of broader environmental changes, or if FA contents are naturally low for this sub-tropical species.

According to the River Continuum Concept, headwater streams are richer in allochthonous (e.g. terrestrial leaves) than autochthonous (e.g. algae) sources of organic matter for consumers. However, compared to algae, leaf litter is of lower food quality, particularly omega-3 polyunsaturated fatty acids (n-3 PUFA), and would constrain the somatic growth, maintenance, and reproduction of stream invertebrates. It may be thus assumed that shredders, such as Gammarus, receive lower quality diets than grazers, e.g. Ecdyonurus, that typically feed on algae., The objective of this study was to assess the provision of dietary PUFA from leaf litter and algae to the shredder Gammarus and the grazer Ecdyonurus. Three different diets (algae, terrestrial leaves, and an algae-leaf litter mix) were supplied to these macroinvertebrates in a flume experiment for 2 weeks. To differentiate how diet sources were retained in these consumers, algae were isotopically labelled with C-13., Both consumers became enriched with C-13 in all treatments, demonstrating that both assimilated algae. For Gammarus, n-3 PUFA increased, whereas n-6 PUFA stayed constant. By contrast, the n-3 PUFA content of Ecdyonurus decreased as a consequence of declining algal supply., Results from compound-specific stable isotope analysis provided evidence that the long-chain n-3 PUFA eicosapentaenoic acid (EPA) in both consumers was more enriched in C-13 than the short-chain n-3 PUFA alpha-linolenic acid, suggesting that EPA was taken up directly from algae and not from heterotrophic biofilms on leaf litter. Both consumers depended on algae as their carbon and EPA source and retained their EPA from high-quality algae.