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27 results on '"Strauss, Sören"'

10. Echo State Networks for Online Prediction of Movement Data – Comparing Investigations

Author

Hellbach, Sven, Strauss, Sören, Eggert, Julian P., Körner, Edgar, Gross, Horst-Michael, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Doug, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Kůrková, Véra, editor, Neruda, Roman, editor, and Koutník, Jan, editor

Published
2008
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11. Using positional information to provide context for biological image analysis with MorphoGraphX 2.0

Author

Strauss, Sören, primary, Runions, Adam, additional, Lane, Brendan, additional, Eschweiler, Dennis, additional, Bajpai, Namrata, additional, Trozzi, Nicola, additional, Routier-Kierzkowska, Anne-Lise, additional, Yoshida, Saiko, additional, Rodrigues da Silveira, Sylvia, additional, Vijayan, Athul, additional, Tofanelli, Rachele, additional, Majda, Mateusz, additional, Echevin, Emillie, additional, Le Gloanec, Constance, additional, Bertrand-Rakusova, Hana, additional, Adibi, Milad, additional, Schneitz, Kay, additional, Bassel, George W, additional, Kierzkowski, Daniel, additional, Stegmaier, Johannes, additional, Tsiantis, Miltos, additional, and Smith, Richard S, additional

Published
2022
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12. Cytokinin promotes growth cessation in the Arabidopsis root

Author

Liu, Shanda, primary, Strauss, Sören, additional, Adibi, Milad, additional, Mosca, Gabriella, additional, Yoshida, Saiko, additional, Dello Ioio, Raffaele, additional, Runions, Adam, additional, Andersen, Tonni Grube, additional, Grossmann, Guido, additional, Huijser, Peter, additional, Smith, Richard S., additional, and Tsiantis, Miltos, additional

Published
2022
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13. Author response: Using positional information to provide context for biological image analysis with MorphoGraphX 2.0

Author

Strauss, Sören, primary, Runions, Adam, additional, Lane, Brendan, additional, Eschweiler, Dennis, additional, Bajpai, Namrata, additional, Trozzi, Nicola, additional, Routier-Kierzkowska, Anne-Lise, additional, Yoshida, Saiko, additional, Rodrigues da Silveira, Sylvia, additional, Vijayan, Athul, additional, Tofanelli, Rachele, additional, Majda, Mateusz, additional, Echevin, Emillie, additional, Le Gloanec, Constance, additional, Bertrand-Rakusova, Hana, additional, Adibi, Milad, additional, Schneitz, Kay, additional, Bassel, George W, additional, Kierzkowski, Daniel, additional, Stegmaier, Johannes, additional, Tsiantis, Miltos, additional, and Smith, Richard S, additional

Published
2022
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18. A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form

Author

Zhang, Zhongjuan, primary, Runions, Adam, additional, Mentink, Remco A., additional, Kierzkowski, Daniel, additional, Karady, Michal, additional, Hashemi, Babak, additional, Huijser, Peter, additional, Strauss, Sören, additional, Gan, Xiangchao, additional, Ljung, Karin, additional, and Tsiantis, Miltos, additional

Published
2020
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19. Accurate and versatile 3D segmentation of plant tissues at cellular resolution

Author

Wolny, Adrian, primary, Cerrone, Lorenzo, additional, Vijayan, Athul, additional, Tofanelli, Rachele, additional, Barro, Amaya Vilches, additional, Louveaux, Marion, additional, Wenzl, Christian, additional, Strauss, Sören, additional, Wilson-Sánchez, David, additional, Lymbouridou, Rena, additional, Steigleder, Susanne S, additional, Pape, Constantin, additional, Bailoni, Alberto, additional, Duran-Nebreda, Salva, additional, Bassel, George W, additional, Lohmann, Jan U, additional, Tsiantis, Miltos, additional, Hamprecht, Fred A, additional, Schneitz, Kay, additional, Maizel, Alexis, additional, and Kreshuk, Anna, additional

Published
2020
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20. Author response: Accurate and versatile 3D segmentation of plant tissues at cellular resolution

Author

Wolny, Adrian, primary, Cerrone, Lorenzo, additional, Vijayan, Athul, additional, Tofanelli, Rachele, additional, Barro, Amaya Vilches, additional, Louveaux, Marion, additional, Wenzl, Christian, additional, Strauss, Sören, additional, Wilson-Sánchez, David, additional, Lymbouridou, Rena, additional, Steigleder, Susanne S, additional, Pape, Constantin, additional, Bailoni, Alberto, additional, Duran-Nebreda, Salva, additional, Bassel, George W, additional, Lohmann, Jan U, additional, Tsiantis, Miltos, additional, Hamprecht, Fred A, additional, Schneitz, Kay, additional, Maizel, Alexis, additional, and Kreshuk, Anna, additional

Published
2020
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21. A Growth-Based Framework for Leaf Shape Development and Diversity

Author

Kierzkowski, Daniel, Runions, Adam, Vuolo, Francesco, Strauss, Sören, Lymbouridou, Rena, Routier-Kierzkowska, Anne-Lise, Wilson-Sánchez, David, Jenke, Hannah, Galinha, Carla, Mosca, Gabriella, Zhang, Zhongjuan, Canales, Claudia, Dello Ioio, Raffaele, Huijser, Peter, Smith, Richard S, Tsiantis, Miltos, Kierzkowski, Daniel, Runions, Adam, Vuolo, Francesco, Strauss, Sören, Lymbouridou, Rena, Routier-Kierzkowska, Anne-Lise, Wilson-Sánchez, David, Jenke, Hannah, Galinha, Carla, Mosca, Gabriella, Zhang, Zhongjuan, Canales, Claudia, Dello Ioio, Raffaele, Huijser, Peter, Smith, Richard S, and Tsiantis, Miltos

Abstract

How do genes modify cellular growth to create morphological diversity? We study this problem in two related plants with differently shaped leaves: Arabidopsis thaliana (simple leaf shape) and Cardamine hirsuta (complex shape with leaflets). We use live imaging, modeling, and genetics to deconstruct these organ-level differences into their cell-level constituents: growth amount, direction, and differentiation. We show that leaf shape depends on the interplay of two growth modes: a conserved organ-wide growth mode that reflects differentiation; and a local, directional mode that involves the patterning of growth foci along the leaf edge. Shape diversity results from the distinct effects of two homeobox genes on these growth modes: SHOOTMERISTEMLESS broadens organ-wide growth relative to edge-patterning, enabling leaflet emergence, while REDUCED COMPLEXITY inhibits growth locally around emerging leaflets, accentuating shape differences created by patterning. We demonstrate the predictivity of our findings by reconstructing key features of C. hirsuta leaf morphology in A. thaliana.

Published
2019

23. A Growth-Based Framework for Leaf Shape Development and Diversity

Author

Kierzkowski, Daniel, primary, Runions, Adam, additional, Vuolo, Francesco, additional, Strauss, Sören, additional, Lymbouridou, Rena, additional, Routier-Kierzkowska, Anne-Lise, additional, Wilson-Sánchez, David, additional, Jenke, Hannah, additional, Galinha, Carla, additional, Mosca, Gabriella, additional, Zhang, Zhongjuan, additional, Canales, Claudia, additional, Dello Ioio, Raffaele, additional, Huijser, Peter, additional, Smith, Richard S., additional, and Tsiantis, Miltos, additional

Published
2019
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24. MorphoGraphX: a platform for quantifying morphogenesis in 4D

Author

Barbier de Reuille, Pierre, Routier-Kierzkowska, Anne-Lise, Kierzkowski, Daniel, Bassel, George W, Schüpbach, Thierry, Tauriello, Gerardo, Bajpai, Namrata, Strauss, Sören, Weber, Alain, Kiss, Annamaria, Burian, Agata, Hofhuis, Hugo, Sapala, Aleksandra, Lipowczan, Marcin, Heimlicher, Maria B, Robinson, Sarah, Bayer, Emmanuelle M, Basler, Konrad; https://orcid.org/0000-0003-3534-1529, Koumoutsakos, Petros, Roeder, Adrienne H K, Aegerter-Wilmsen, Tinri, Nakayama, Naomi, Tsiantis, Miltos, Hay, Angela, Kwiatkowska, Dorota, Xenarios, Ioannis, Kuhlemeier, Cris, Smith, Richard S, Barbier de Reuille, Pierre, Routier-Kierzkowska, Anne-Lise, Kierzkowski, Daniel, Bassel, George W, Schüpbach, Thierry, Tauriello, Gerardo, Bajpai, Namrata, Strauss, Sören, Weber, Alain, Kiss, Annamaria, Burian, Agata, Hofhuis, Hugo, Sapala, Aleksandra, Lipowczan, Marcin, Heimlicher, Maria B, Robinson, Sarah, Bayer, Emmanuelle M, Basler, Konrad; https://orcid.org/0000-0003-3534-1529, Koumoutsakos, Petros, Roeder, Adrienne H K, Aegerter-Wilmsen, Tinri, Nakayama, Naomi, Tsiantis, Miltos, Hay, Angela, Kwiatkowska, Dorota, Xenarios, Ioannis, Kuhlemeier, Cris, and Smith, Richard S

Abstract

Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually performed either in full 3D, which is computationally expensive and technically challenging, or on 2D planar projections, which introduces geometrical artifacts on highly curved organs. Here we present MorphoGraphX ( www.MorphoGraphX.org), a software that bridges this gap by working directly with curved surface images extracted from 3D data. In addition to traditional 3D image analysis, we have developed algorithms to operate on curved surfaces, such as cell segmentation, lineage tracking and fluorescence signal quantification. The software's modular design makes it easy to include existing libraries, or to implement new algorithms. Cell geometries extracted with MorphoGraphX can be exported and used as templates for simulation models, providing a powerful platform to investigate the interactions between shape, genes and growth.

Published
2015

25. MorphoGraphX: A platform for quantifying morphogenesis in 4D

Author

Barbier de Reuille, Pierre, primary, Routier-Kierzkowska, Anne-Lise, additional, Kierzkowski, Daniel, additional, Bassel, George W, additional, Schüpbach, Thierry, additional, Tauriello, Gerardo, additional, Bajpai, Namrata, additional, Strauss, Sören, additional, Weber, Alain, additional, Kiss, Annamaria, additional, Burian, Agata, additional, Hofhuis, Hugo, additional, Sapala, Aleksandra, additional, Lipowczan, Marcin, additional, Heimlicher, Maria B, additional, Robinson, Sarah, additional, Bayer, Emmanuelle M, additional, Basler, Konrad, additional, Koumoutsakos, Petros, additional, Roeder, Adrienne HK, additional, Aegerter-Wilmsen, Tinri, additional, Nakayama, Naomi, additional, Tsiantis, Miltos, additional, Hay, Angela, additional, Kwiatkowska, Dorota, additional, Xenarios, Ioannis, additional, Kuhlemeier, Cris, additional, and Smith, Richard S, additional

Published
2015
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26. Author response: MorphoGraphX: A platform for quantifying morphogenesis in 4D

Author

Barbier de Reuille, Pierre, primary, Routier-Kierzkowska, Anne-Lise, additional, Kierzkowski, Daniel, additional, Bassel, George W, additional, Schüpbach, Thierry, additional, Tauriello, Gerardo, additional, Bajpai, Namrata, additional, Strauss, Sören, additional, Weber, Alain, additional, Kiss, Annamaria, additional, Burian, Agata, additional, Hofhuis, Hugo, additional, Sapala, Aleksandra, additional, Lipowczan, Marcin, additional, Heimlicher, Maria B, additional, Robinson, Sarah, additional, Bayer, Emmanuelle M, additional, Basler, Konrad, additional, Koumoutsakos, Petros, additional, Roeder, Adrienne HK, additional, Aegerter-Wilmsen, Tinri, additional, Nakayama, Naomi, additional, Tsiantis, Miltos, additional, Hay, Angela, additional, Kwiatkowska, Dorota, additional, Xenarios, Ioannis, additional, Kuhlemeier, Cris, additional, and Smith, Richard S, additional

Published
2015
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