8 results on '"Strain SAJ"'
Search Results
2. Control and Eradication Programs for Six Cattle Diseases in the Netherlands.
- Author
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Santman-Berends IMGA, Mars MH, Weber MF, van Duijn L, Waldeck HWF, Biesheuvel MM, van den Brink KMJA, Dijkstra T, Hodnik JJ, Strain SAJ, de Roo A, Veldhuis AMB, and van Schaik G
- Abstract
Within the European Union, infectious cattle diseases are categorized in the Animal Health Law. No strict EU regulations exist for control, evidence of disease freedom, and surveillance of diseases listed other than categories A and B. Consequently, EU member states follow their own varying strategies for disease control. The aim of this study was to provide an overview of the control and eradication programs (CPs) for six cattle diseases in the Netherlands between 2009 and 2019 and to highlight characteristics specific to the Dutch situation. All of these diseases were listed as C,D or E in the New Animal Health Law. In the Netherlands, CPs are in place for six endemic cattle diseases: bovine viral diarrhea, infectious bovine rhinotracheitis, salmonellosis, paratuberculosis, leptospirosis, and neosporosis. These CPs have been tailored to the specific situation in the Netherlands: a country with a high cattle density, a high rate of animal movements, a strong dependence on export of dairy products, and a high-quality data-infrastructure. The latter specifically applies to the dairy sector, which is the leading cattle sector in the Netherlands. When a herd enters a CP, generally the within-herd prevalence of infection is estimated in an initial assessment. The outcome creates awareness of the infection status of a herd and also provides an indication of the costs and time to achieve the preferred herd status. Subsequently, the herd enrolls in the control phase of the CP to, if present, eliminate the infection from a herd and a surveillance phase to substantiate the free or low prevalence status over time. The high-quality data infrastructure that results in complete and centrally registered census data on cattle movements provides the opportunity to design CPs while minimizing administrative efforts for the farmer. In the CPs, mostly routinely collected samples are used for surveillance. Where possible, requests for proof of the herd status are sent automatically. Automated detection of risk factors for introduction of new animals originating from a herd without the preferred herd status i.e., free or unsuspected, is in place using centrally registered data. The presented overview may inspire countries that want to develop cost-effective CPs for endemic diseases that are not (yet) regulated at EU level., Competing Interests: IS-B, MM, MW, LD, HW, KB, TD, AR, AV, and GS are employed by Royal GD, which runs most of the CPs described in this paper. All authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Santman-Berends, Mars, Weber, van Duijn, Waldeck, Biesheuvel, van den Brink, Dijkstra, Hodnik, Strain, de Roo, Veldhuis and van Schaik.)
- Published
- 2021
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3. Trends in Salmonella serovars and antimicrobial resistance in pigs and poultry in Northern Ireland between 1997 and 2016.
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Porter S, Strain SAJ, Bagdonaite G, McDowell SW, Bronckaers T, Sherrey M, Devine P, Pascual-Linaza AV, Spence N, Porter R, Guelbenzu-Gonzalo M, Davies RH, and Lahuerta-Marin A
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- Animals, Ireland epidemiology, Poultry, Poultry Diseases drug therapy, Poultry Diseases epidemiology, Salmonella drug effects, Salmonella isolation & purification, Salmonella Infections, Animal drug therapy, Salmonella Infections, Animal epidemiology, Serogroup, Swine, Swine Diseases drug therapy, Swine Diseases epidemiology, Drug Resistance, Bacterial genetics, Poultry Diseases microbiology, Salmonella genetics, Salmonella Infections, Animal microbiology, Swine Diseases microbiology
- Abstract
Background: In the EU, salmonellosis is the second most commonly reported zoonosis. This pattern is reflected in Northern Ireland. Historically, foodborne salmonellosis has largely been attributed to the consumption of poultry products, and as such a number of legislative measures have been introduced by the EC. These policies focus mainly on five target Salmonella serovars., Methods: Here the authors present a descriptive analysis of 20 years of data from the Northern Ireland National Reference Laboratory for Salmonella ., Results: The study's results show, for poultry submissions, a large decrease in the detection of four of the five targeted Salmonella serovars over the study period, with the fifth serovar undetected throughout the study. Additionally, there was an increase in the detection of a number of other non-regulated serovars. In pigs, S Typhimurium, which is among the most common causes of human salmonellosis, was the most commonly isolated serovar. When comparing levels of antimicrobial resistance in S Typhimurium between livestock groups, the authors found a decrease over time in poultry, but an increase in pigs, highlighting the potential significance of pigs in addressing public health concerns., Conclusion: The authors conclude that continued surveillance is important in the assessment of control measures at a national and transnational scale., Competing Interests: Competing interests: None declared., (© British Veterinary Association 2019. No commercial re-use. See rights and permissions. Published by BMJ.)
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- 2020
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4. Spatial and risk factor analysis of bovine viral diarrhoea (BVD) virus after the first-year compulsory phase of BVD eradication programme in Northern Ireland.
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Charoenlarp W, Frankena K, Strain SAJ, Guelbenzu-Gonzalo M, Graham J, and Byrne AW
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- Animals, Bovine Virus Diarrhea-Mucosal Disease epidemiology, Cattle, Diarrhea Viruses, Bovine Viral, Factor Analysis, Statistical, Northern Ireland, Retrospective Studies, Risk Factors, Bovine Virus Diarrhea-Mucosal Disease prevention & control
- Abstract
Bovine viral diarrhoea virus (BVDV) causes bovine viral diarrhoea (BVD), which is a contagious pathogen that can have a significant economic impact on cattle industries. In Northern Ireland (NI), the compulsory phase of a BVD eradication programme was implemented in 2016. The aim of this retrospective population based study was to utilize herd-level data after the first year of the compulsory phase (March 2016-March 2017) to determine the spatial distribution and variation of BVDV, to identify clusters of infection, and to quantify some risk factors associated with BVD in NI. Global spatial clustering (autocorrelation) and local spatial hot-spot analyses were used to specify the clustering areas (hot- and cold-spot). A suite of multivariable logistic analyses was performed to estimate the associations of spatial and non-spatial factors (relating to herd characteristics) with the risk of being a BVDV positive herd. Final models were compared by evaluating the model fit and the ability to account for spatial autocorrelation in the study area. There were 17,186 herds included in the analysis. The herd-level prevalence of BVDV was 11.31%. Significant spatial clustering of BVDV positive herds was presented in the central region of NI. A mixed effects logistic model, with a spatial random effect term, was considered the best model. The final model showed that a positive BVDV status during the voluntary phase prior to the compulsory phase started (OR = 2.25; CI 95% = 1.85-2.73), larger herd size (OR = 6.19; CI 95% = 5.22-7.34 for herd size > 100 animals) and a larger number of positive nearest neighbours within 4 km radius (OR = 1.24; CI 95% = 1.05-1.47 for 8-9 neighbours and OR = 1.41; CI 95% = 1.20-1.65 for 10-12 neighbours) were significantly related to the risk of a herd being tested positive for BVDV. The clear spatial pattern from the local spatial clustering analyses could be used for targeted surveillance and control measures by focusing on the central region of NI., (Copyright © 2018 Elsevier B.V. All rights reserved.)
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- 2018
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5. Diagnostic potential of the peptide-mediated magnetic separation (PMS)-phage assay and PMS-culture to detect Mycobacterium avium subsp. paratuberculosis in bovine milk samples.
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O'Brien LM, McAloon CG, Stewart LD, Strain SAJ, and Grant IR
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- Animals, Bacteriophages physiology, Cattle, Food Contamination analysis, Mycobacterium avium subsp. paratuberculosis genetics, Paratuberculosis microbiology, Peptides chemistry, Sensitivity and Specificity, Biological Assay methods, Milk microbiology, Mycobacterium avium subsp. paratuberculosis isolation & purification
- Abstract
Controlling the spread of Johne's disease, caused by Mycobacterium avium subsp. paratuberculosis (MAP), in domestic livestock is challenging. Current diagnostic methods lack sufficient sensitivity to detect subclinically infected animals, and thus, better diagnostic methods are needed. This study was carried out to investigate the diagnostic potential of two novel peptide-mediated magnetic separation (PMS)-based tests-a PMS-phage assay and PMS-culture-both of which have been developed and optimized to detect viable MAP cells in bovine milk. Individual milk samples (50 ml) were obtained from 105 "non-infected" and 40 "MAP-infected" animals (classified as such on the basis of prior faecal culture and serum-ELISA results) in three dairy herds and tested in parallel by the PMS-phage assay and PMS-culture. Diagnostic sensitivity (DSe) and specificity (DSp) of the PMS-phage and PMS-culture methods were determined relative to the MAP infection status of the animal contributing the milk sample. The PMS-based tests applied individually showed moderate DSe (PMS-culture 0.250 and PMS-phage assay 0.325) and high DSp (0.962 and 1.000, respectively). When results of the two PMS-based tests were combined, DSe increased substantially to 0.525, and the DSp was calculated to be 0.962. It was concluded that combined application of the PMS-phage assay and PMS-culture provided the most complete picture regarding the presence of viable MAP in bovine milk samples. A comprehensive validation of the PMS-based assays relative to currently used diagnostic methods (faecal culture and serum-ELISA) would be the next step in assessment of the diagnostic potential of these novel PMS-based methods., (© 2017 Blackwell Verlag GmbH.)
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- 2018
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6. Monitoring Mycobacterium bovis in Eurasian badgers ( Meles meles ) killed by vehicles in Northern Ireland between 1998 and 2011.
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Courcier EA, Menzies FD, Strain SAJ, Skuce RA, Robinson PA, Patterson IAP, McBride KR, McCormick CM, Walton E, McDowell SWJ, and Abernethy DA
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- Accidents, Traffic mortality, Animals, Female, Male, Northern Ireland epidemiology, Population Surveillance, Mustelidae microbiology, Mycobacterium bovis isolation & purification
- Abstract
Competing Interests: Competing interests: None declared.
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- 2018
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7. Assessment of concurrent infection with bovine viral diarrhoea virus (BVDV) and Mycobacterium bovis: A herd-level risk factor analysis from Northern Ireland.
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Byrne AW, Guelbenzu-Gonzalo M, Strain SAJ, McBride S, Graham J, Lahuerta-Marin A, Harwood R, Graham DA, and McDowell S
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- Animals, Cattle, Coinfection microbiology, Coinfection virology, Dairying, Diarrhea Viruses, Bovine Viral, Female, Ireland, Male, Mycobacterium bovis, Risk Factors, Bovine Virus Diarrhea-Mucosal Disease complications, Cattle Diseases microbiology, Cattle Diseases virology, Coinfection veterinary, Tuberculosis, Bovine complications
- Abstract
Bovine viral diarrhoea virus (BVDV) is a significant pathogen of cattle, leading to severe economic and animal-welfare impacts. Furthermore, the pathogen has been associated with impacting the progression or spread of other pathogens (e.g. Mycobacterium bovis, the causative agent of bovine tuberculosis (bTB)). During this study we investigated (i) risk factors for BVDV at a herd-level and (ii) whether there was any association between BVDV and herd-level bTB risk. The data for this study were gathered from a voluntary BVDV control programme in Northern Ireland (2013-2015) based on the identification of virus positive animals through tissue tag testing of calves. We assigned a herd-level BVDV status to 2827 participating herds, where a herd was assumed "infected" if one or more animals tested positive for BVDV. Two model suites were developed. Firstly, we assessed risk factors for BVDV herd status using multivariable logit random-effects modelling, aggregating to the calendar year level (2013-2015; n=4828; model 1). Secondly, we aggregated data across the three years of the study to give an overall status for the whole study period (n=2827; logistic model 2). Risk factors included year, herd-type, herd size, number of births, inward trade moves, calf mortality, and region. Furthermore, the herd-level bovine tuberculosis status (based on the single intradermal comparative cervical tuberculin (SICCT) test outcomes, or confirmation at post-mortem), or the size of bTB breakdowns (number of SICCT test positive animals), of herds was also investigated to assess whether there was an association (co-infection) with herd BVDV status. The final models suggested that BVDV herd status was positively associated with increased levels of calf mortality, herd size, number of births, the number of BVDV tests undertaken and the number of animals introduced to the herd. There was a significant univariable positive association between BVDV status, and SICCT breakdown risk, breakdown size and confirmed bTB status in model 2. However, there was no evidence of significant associations between bTB status (using SICTT status, confirmed status or herd breakdown size) and BVDV status in final multivariable models when controlling for other significant confounders. These results provide information for action for the future control and eradication of BVDV in Northern Ireland, though these data provide little support for the hypothesised association between BVDV and bTB status at herd-level. Further animal-level analyses are necessary to investigate whether there is support for a BVD-bTB co-infection association, including the impact of co-infection on the severity of infection., (Crown Copyright © 2017. Published by Elsevier B.V. All rights reserved.)
- Published
- 2017
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8. Risk factors for failure to detect bovine tuberculosis in cattle from infected herds across Northern Ireland (2004-2010).
- Author
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Lahuerta-Marin A, McNair J, Skuce R, McBride S, Allen M, Strain SAJ, Menzies FD, McDowell SJW, and Byrne AW
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- Animals, Cattle, Interferon-gamma, Intradermal Tests, Northern Ireland epidemiology, Risk Factors, Seasons, Tuberculosis, Bovine epidemiology, Tuberculosis, Bovine microbiology, Mycobacterium bovis, Tuberculin Test veterinary, Tuberculosis, Bovine diagnosis
- Abstract
Correctly identifying animals that are truly infected with a pathogen using ante-mortem tests is the cornerstone of any disease eradication programme. Failure to identify all infected animals will impede the progress towards controlling and eradicating disease and may also have unforeseen consequences when specific prevention measures are in place to avoid animal-to-animal transmission. In the case of bovine tuberculosis (bTB), the screening ante-mortem test, the Single Comparative Intradermal Tuberculin Test (SCITT), can exhibit moderate sensitivity which can result in a "hidden burden" of infection residing within the population. Using an animal-level dataset relating to the disclosure of infected cattle with Mycobacterium bovis, the causative agent of bTB within infected herds in Northern Ireland, we investigated what factors influenced the probability of an animal being a false-negative when truly infected (using post-mortem (PM) microbiological culture confirmation results to assess infection status). We found that different risk factors affected the probability of a test-negative outcome on infected animals depending on the ante-mortem test or their combination (SICTT and/or interferon gamma (IFN-ɣ) testing). Using multivariable models, SCITT disclosure performance varied significantly by age, location (region), and production type. The IFN-ɣ tests were significantly affected by region or season, but these effects depended on the cut-off used during interpretation of the test which affected the tests characteristics. Parallel use of SCITT and IFN-ɣ tests resulted in the least number of false-negatives, and their disclosure was affected by season and age-class. Understanding the factors that lead to the non-disclosure of infected animals is essential to optimise large-scale bTB disease eradication programmes., (Copyright © 2016. Published by Elsevier Ltd.)
- Published
- 2016
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