209 results on '"Stopper P"'
Search Results
2. SWIEET—a salt-free alternative to QuEChERS
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Kalinke, Nadja, Stopper, Pascal, Völkl, Luca, Diehl, Florian, and Huhn, Carolin
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- 2024
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3. Genotoxicity of selected cannabinoids in human lymphoblastoid TK6 cells
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Kolar, Nicol, Bankoglu, Ezgi Eyluel, and Stopper, Helga
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- 2024
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4. CD16+ as predictive marker for early relapse in aggressive B-NHL/DLBCL patients
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Zöphel, Sylvia, Küchler, Nadja, Jansky, Johanna, Hoxha, Cora, Schäfer, Gertrud, Weise, Julius J., Vialle, Joanne, Kaschek, Lea, Stopper, Gebhard, Eichler, Hermann, Yildiz, Daniela, Moter, Alina, Wendel, Philipp, Ullrich, Evelyn, Schormann, Claudia, Rixecker, Torben, Cetin, Onur, Neumann, Frank, Orth, Patrick, Bewarder, Moritz, Hoth, Markus, Thurner, Lorenz, and Schwarz, Eva C.
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- 2024
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5. Optimization of Hand Gesture Object Detection Using Fine-Tuning Techniques on an Integrated Service of Smart Robot
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Faikul Umam, Hanifudin Sukri, Ach Dafid, Firman Maolana, and Mycel Natalis Stopper Ndruru
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optimization ,object detection ,hand gestures ,fine-tuning ,smart robot. ,Technology - Abstract
Robots are one of the testbeds that can be used as objects for the application of intelligent systems in the current era of Industry 4.0. With such systems, robots can interact with humans through perception (sensors) like cameras. Through this interaction, it is expected that robots can assist humans in providing reliable and efficient service improvements. In this research, the robot collects data from the camera, which is then processed using a Convolutional Neural Network (CNN). This approach is based on the adaptive nature of CNN in recognizing visuals captured by the camera. In its application, the robot used in this research is a humanoid model named Robolater, commonly known as the Integrated Service Robot. The fundamental reason for using a humanoid robot model is to enhance human-robot interaction, aiming to achieve better efficiency, reliability, and quality. The research begins with the implementation of hardware and software so that the robot can recognize human movements through the camera sensor. The robot is trained to recognize hand gestures using the Convolutional Neural Network method, where the deep learning algorithm, as a supervised type, can recognize movements through visual inputs. At this stage, the robot is trained with various weights, backbones, and detectors. The results of this study show that the F-T Last Half technique exhibits more stable performance compared to other techniques, especially with larger input scales (640×644). The model using this technique achieved a mAP of 91.6%, with a precision of 84.6%, and a recall of 80.6%.
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- 2024
6. CD16+ as predictive marker for early relapse in aggressive B-NHL/DLBCL patients
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Sylvia Zöphel, Nadja Küchler, Johanna Jansky, Cora Hoxha, Gertrud Schäfer, Julius J. Weise, Joanne Vialle, Lea Kaschek, Gebhard Stopper, Hermann Eichler, Daniela Yildiz, Alina Moter, Philipp Wendel, Evelyn Ullrich, Claudia Schormann, Torben Rixecker, Onur Cetin, Frank Neumann, Patrick Orth, Moritz Bewarder, Markus Hoth, Lorenz Thurner, and Eva C. Schwarz
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aggressive B-NHL (non-Hodgkin B cell lymphoma) ,diffuse large B cell lymphoma (DLBCL) ,CD16+ T cell ,CD16+ monocyte ,antibody-dependent cellular cytotoxicity (ADCC) ,rituximab ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Assessing the prognosis of patients with aggressive non-Hodgkin B cell lymphoma mainly relies on a clinical risk score (IPI). Standard first-line therapies are based on a chemo-immunotherapy with rituximab, which mediates CD16-dependent antibody-dependent cellular cytotoxicity (ADCC). We phenotypically and functionally analyzed blood samples from 46 patients focusing on CD16+ NK cells, CD16+ T cells and CD16+ monocytes. Kaplan-Meier survival curves show a superior progression-free survival (PFS) for patients having more than 1.6% CD16+ T cells (p = 0.02; HR = 0.13 (0.007–0.67)) but an inferior PFS having more than 10.0% CD16+ monocytes (p = 0.0003; HR = 16.0 (3.1-291.9)) at diagnosis. Surprisingly, no correlation with NK cells was found. The increased risk of relapse in the presence of > 10.0% CD16+ monocytes is reversed by the simultaneous occurrence of > 1.6% CD16+ T cells. The unexpectedly strong protective function of CD16+ T cells could be explained by their high antibody-dependent cellular cytotoxicity as quantified by real-time killing assays and single-cell imaging. The combined analysis of CD16+ monocytes (> 10%) and CD16+ T cells (
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- 2024
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7. Placebo Effects on the Enjoyment of Physical Activity and Performance among Kindergarten Children: A Randomized Controlled Trial
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Marlies Stopper, Albert Wabnegger, and Anne Schienle
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placebos ,open-label placebos ,children ,kindergarten ,enjoyment ,physical activity ,Public aspects of medicine ,RA1-1270 ,Psychology ,BF1-990 - Abstract
Studies with adults and school children have shown that placebos can enhance motivation and performance in physical activities. This study aimed to investigate whether similar effects are present in kindergarten-aged children. A total of 101 children (58 girls, 43 boys) aged 3 to 6 years were randomly assigned to one of two groups that either received a deceptive placebo (DP: “magic potion”) or a nondeceptive placebo (NDP: “water”) to enhance physical abilities. Each child completed three tasks (sprinting; balancing: standing on a balance board; strength: using a handheld dynamometer) both with and without the placebo. The variables assessed included task performance, enjoyment, and expected and perceived placebo efficacy (measured with nonverbal pictorial rating scales). Results showed that both the DP and NDP increased speed. For strength, balance, and task enjoyment (which was very high), no placebo-induced changes were observed. Expected efficacy was higher for the DP; perceived efficacy did not differ between DP and NDP. In conclusion, reported outcome expectations indicated that kindergarten-aged children were already able to differentiate between the two types of placebos which exhibited positive effects concerning running performance. This encourages further research on using nondeceptive placebos to enhance physical activity, which is crucial for children’s overall health.
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- 2024
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8. Responsible sport and state oversight: sports organisations as civil society organisations and private regulators in France and Germany
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Fischer, Paul, Kornbeck, Jacob, Miège, Colin, and Stopper, Martin
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- 2024
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9. Novel algorithms for improved detection and analysis of fluorescent signal fluctuations
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Stopper, Gebhard, Caudal, Laura C., Rieder, Phillip, Gobbo, Davide, Stopper, Laura, Felix, Lisa, Everaerts, Katharina, Bai, Xianshu, Rose, Christine R., Scheller, Anja, and Kirchhoff, Frank
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- 2023
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10. Improving VAE based molecular representations for compound property prediction
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Tevosyan, A., Khondkaryan, L., Khachatrian, H., Tadevosyan, G., Apresyan, L., Babayan, N., Stopper, H., and Navoyan, Z.
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Computer Science - Machine Learning - Abstract
Collecting labeled data for many important tasks in chemoinformatics is time consuming and requires expensive experiments. In recent years, machine learning has been used to learn rich representations of molecules using large scale unlabeled molecular datasets and transfer the knowledge to solve the more challenging tasks with limited datasets. Variational autoencoders are one of the tools that have been proposed to perform the transfer for both chemical property prediction and molecular generation tasks. In this work we propose a simple method to improve chemical property prediction performance of machine learning models by incorporating additional information on correlated molecular descriptors in the representations learned by variational autoencoders. We verify the method on three property prediction asks. We explore the impact of the number of incorporated descriptors, correlation between the descriptors and the target properties, sizes of the datasets etc. Finally, we show the relation between the performance of property prediction models and the distance between property prediction dataset and the larger unlabeled dataset in the representation space.
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- 2022
11. Disruptive effects of plasticizers bisphenol A, F, and S on steroidogenesis of adrenocortical cells
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Benedikt Pötzl, Lydia Kürzinger, Sabine Kendl, Helga Stopper, Max Kurlbaum, Martin Fassnacht, and Ulrich Dischinger
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BPA (bisphenol A) ,BPF (bisphenol F) ,BPS (bisphenol S) ,EDC ,endocrine disruptor ,adrenal ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
IntroductionEndocrine disrupting chemicals (EDCs) are known to interfere with endocrine homeostasis. Their impact on the adrenal cortex and steroidogenesis has not yet been sufficiently elucidated. This applies in particular to the ubiquitously available bisphenols A (BPA), F (BPF), and S (BPS).MethodsNCI-H295R adrenocortical cells were exposed to different concentrations (1nM-1mM) of BPA, BPF, BPS, and an equimolar mixture of them (BPmix). After 72 hours, 15 endogenous steroids were measured using LC-MS/MS. Ratios of substrate and product of CYP-regulated steps were calculated to identify most influenced steps of steroidogenesis. mRNA expression of steroidogenic enzymes was determined by real-time PCR.ResultsCell viability remained unaffected at bisphenol concentrations lower than 250 µM. All tested bisphenols and their combination led to extensive alterations in the quantified steroid levels. The most profound fold changes (FC) in steroid concentrations after exposure to BPA (>10µM) were seen for androstenedione, e.g. a 0.37±0.11-fold decrease at 25µM (p≤0.0001) compared to vehicle-treated controls. For BPF, levels of 17-hydroxyprogesterone were significantly increased by 25µM (FC 2.57±0.49, p≤0.001) and 50µM (FC 2.65±0.61, p≤0.0001). BPS treatment led to a dose-dependent decrease of 11-deoxycorticosterone at >1µM (e.g. FC 0.24±0.14, p≤0.0001 at 10µM). However, when combining all three bisphenols, additive effects were detected: e.g. 11-deoxycortisosterone was decreased at doses >10µM (FC 0.27±0.04, p≤0.0001, at 25µM), whereas 21-deoxycortisol was increased by 2.92±0.20 (p≤0.01) at 10µM, and by 3.21±0.45 (p≤0.001) at 50µM. While every measured androgen (DHEA, DHEAS, androstenedione, testosterone, DHT) was lowered in all experiments, estradiol levels were significantly increased by BPA, BPF, BPS, and BPmix (e.g. FC 3.60±0.54, p≤0.0001 at 100µM BPF). Calculated substrate-product ratios indicated an inhibition of CYP17A1-, and CYP21A2 mediated conversions, whereas CYP11B1 and CYP19A1 showed higher activity in the presence of bisphenols. Based on these findings, most relevant mRNA expression of CYP genes were analysed. mRNA levels of StAR, CYP11B1, and CYP17A1 were significantly increased by BPF, BPS, and BPmix.DiscussionIn cell culture, bisphenols interfere with steroidogenesis at non-cytotoxic levels, leading to compound-specific patterns of significantly altered hormone levels. These results justify and call for additional in-vivo studies to evaluate effects of EDCs on adrenal gland functionality.
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- 2024
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12. Synthesis and preclinical evaluation of novel 99mTc-labeled PSMA ligands for radioguided surgery of prostate cancer
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Kunert, Jan-Philip, Müller, Max, Günther, Thomas, Stopper, León, Urtz-Urban, Nicole, Beck, Roswitha, and Wester, Hans-Jürgen
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- 2023
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13. Measuring DNA modifications with the comet assay: a compendium of protocols
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Collins, Andrew, Møller, Peter, Gajski, Goran, Vodenková, Soňa, Abdulwahed, Abdulhadi, Anderson, Diana, Bankoglu, Ezgi Eyluel, Bonassi, Stefano, Boutet-Robinet, Elisa, Brunborg, Gunnar, Chao, Christy, Cooke, Marcus S., Costa, Carla, Costa, Solange, Dhawan, Alok, de Lapuente, Joaquin, Bo’, Cristian Del, Dubus, Julien, Dusinska, Maria, Duthie, Susan J., Yamani, Naouale El, Engelward, Bevin, Gaivão, Isabel, Giovannelli, Lisa, Godschalk, Roger, Guilherme, Sofia, Gutzkow, Kristine B., Habas, Khaled, Hernández, Alba, Herrero, Oscar, Isidori, Marina, Jha, Awadhesh N., Knasmüller, Siegfried, Kooter, Ingeborg M., Koppen, Gudrun, Kruszewski, Marcin, Ladeira, Carina, Laffon, Blanca, Larramendy, Marcelo, Hégarat, Ludovic Le, Lewies, Angélique, Lewinska, Anna, Liwszyc, Guillermo E., de Cerain, Adela López, Manjanatha, Mugimane, Marcos, Ricard, Milić, Mirta, de Andrade, Vanessa Moraes, Moretti, Massimo, Muruzabal, Damian, Novak, Matjaž, Oliveira, Rui, Olsen, Ann-Karin, Owiti, Norah, Pacheco, Mário, Pandey, Alok K., Pfuhler, Stefan, Pourrut, Bertrand, Reisinger, Kerstin, Rojas, Emilio, Rundén-Pran, Elise, Sanz-Serrano, Julen, Shaposhnikov, Sergey, Sipinen, Ville, Smeets, Karen, Stopper, Helga, Teixeira, João Paulo, Valdiglesias, Vanessa, Valverde, Mahara, van Acker, Frederique, van Schooten, Frederik-Jan, Vasquez, Marie, Wentzel, Johannes F., Wnuk, Maciej, Wouters, Annelies, Žegura, Bojana, Zikmund, Tomas, Langie, Sabine A. S., and Azqueta, Amaya
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- 2023
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14. Fate of micronuclei and micronucleated cells after treatment of HeLa cells with different genotoxic agents
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Reimann, Hauke, Stopper, Helga, and Hintzsche, Henning
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- 2023
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15. Genotoxicity of pyrrolizidine alkaloids in metabolically inactive human cervical cancer HeLa cells co-cultured with human hepatoma HepG2 cells
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Hadi, Naji Said Aboud, Bankoglu, Ezgi Eyluel, and Stopper, Helga
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- 2023
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16. The Comet Assay as a Tool in Human Biomonitoring Studies of Environmental and Occupational Exposure to Chemicals—A Systematic Scoping Review
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Carina Ladeira, Peter Møller, Lisa Giovannelli, Goran Gajski, Anja Haveric, Ezgi Eyluel Bankoglu, Amaya Azqueta, Marko Gerić, Helga Stopper, José Cabêda, Fernanda S. Tonin, and Andrew Collins
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comet assay ,human biomonitoring ,air pollution ,anaesthetics ,antineoplastic drugs ,heavy metals ,Chemical technology ,TP1-1185 - Abstract
Biomonitoring of human populations exposed to chemical substances that can act as potential mutagens or carcinogens, may enable the detection of damage and early disease prevention. In recent years, the comet assay has become an important tool for assessing DNA damage, both in environmental and occupational exposure contexts. To evidence the role of the comet assay in human biomonitoring, we have analysed original research studies of environmental or occupational exposure that used the comet assay in their assessments, following the PRISMA-ScR method (preferred reporting items for systematic reviews and meta-analyses extension for scoping reviews). Groups of chemicals were designated according to a broad classification, and the results obtained from over 300 original studies (n = 123 on air pollutants, n = 14 on anaesthetics, n = 18 on antineoplastic drugs, n = 57 on heavy metals, n = 59 on pesticides, and n = 49 on solvents) showed overall higher values of DNA strand breaks in the exposed subjects in comparison with the unexposed. In summary, our systematic scoping review strengthens the relevance of the use of the comet assay in assessing DNA damage in human biomonitoring studies.
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- 2024
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17. Progeny counter mechanism in malaria parasites is linked to extracellular resources.
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Vanessa S Stürmer, Sophie Stopper, Patrick Binder, Anja Klemmer, Nicolas P Lichti, Nils B Becker, and Julien Guizetti
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Malaria is caused by the rapid proliferation of Plasmodium parasites in patients and disease severity correlates with the number of infected red blood cells in circulation. Parasite multiplication within red blood cells is called schizogony and occurs through an atypical multinucleated cell division mode. The mechanisms regulating the number of daughter cells produced by a single progenitor are poorly understood. We investigated underlying regulatory principles by quantifying nuclear multiplication dynamics in Plasmodium falciparum and knowlesi using super-resolution time-lapse microscopy. This confirmed that the number of daughter cells was consistent with a model in which a counter mechanism regulates multiplication yet incompatible with a timer mechanism. P. falciparum cell volume at the start of nuclear division correlated with the final number of daughter cells. As schizogony progressed, the nucleocytoplasmic volume ratio, which has been found to be constant in all eukaryotes characterized so far, increased significantly, possibly to accommodate the exponentially multiplying nuclei. Depleting nutrients by dilution of culture medium caused parasites to produce fewer merozoites and reduced proliferation but did not affect cell volume or total nuclear volume at the end of schizogony. Our findings suggest that the counter mechanism implicated in malaria parasite proliferation integrates extracellular resource status to modify progeny number during blood stage infection.
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- 2023
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18. On the decay of the pair correlation function and the line of vanishing excess isothermal compressibility in simple fluids
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Stopper, Daniel, Hansen-Goos, Hendrik, Roth, Roland, and Evans, Robert
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Statistical Mechanics - Abstract
We re-visit the competition between attractive and repulsive interparticle forces in simple fluids and how this governs and connects the macroscopic phase behavior and structural properties as manifest in pair correlation functions. We focus on the asymptotic decay of the total correlation function $h(r)$ which is, in turn, controlled by the form of the pair direct correlation function $c(r)$. The decay of $r h(r)$ to zero can be either exponential (monotonic) if attraction dominates repulsion and exponentially damped oscillatory otherwise. The Fisher-Widom (FW) line separates the phase diagram into two regions characterized by the two different types of asymptotic decay. We show that there is a new and physically intuitive thermodynamic criterion which approximates well the actual FW line. This new criterion defines a line where the isothermal compressibility takes its ideal gas value $\chi_T=\chi_T^\text{id}$. We test our hypothesis by considering four commonly used models for simple fluids. In all cases the new criterion yields a line in the phase diagram that is close to the actual FW line for the thermodynamic state points that are most relevant. We also investigate (Widom) lines of maximal correlation length, emphasizing the importance of distinguishing between the true and Ornstein-Zernike correlation lengths
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- 2019
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19. Synthesis and preclinical evaluation of novel 99mTc-labeled PSMA ligands for radioguided surgery of prostate cancer
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Jan-Philip Kunert, Max Müller, Thomas Günther, León Stopper, Nicole Urtz-Urban, Roswitha Beck, and Hans-Jürgen Wester
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Technetium-99m ,PSMA ,Radioguided surgery ,Prostate cancer ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background Radioguided surgery (RGS) has recently emerged as a valuable new tool in the management of recurrent prostate cancer (PCa). After preoperative injection of a 99mTc-labeled prostate-specific membrane antigen (PSMA) inhibitor, radioguided intraoperative identification and resection of lesions is facilitated by means of suitable γ-probes. First clinical experiences show the feasibility of RGS and suggest superiority over conventional lymph node dissection in recurrent PCa. However, commonly used [99mTc]Tc-PSMA-I&S exhibits slow whole-body clearance, thus hampering optimal tumor-to-background ratios (TBR) during surgery. We therefore aimed to develop novel 99mTc-labeled, PSMA-targeted radioligands with optimized pharmacokinetic profile to increase TBR at the time of surgery. Methods Three 99mTc-labeled N4-PSMA ligands were preclinically evaluated and compared to [99mTc]Tc-PSMA-I&S. PSMA affinity (IC50) and internalization were determined on LNCaP cells. Lipophilicity was assessed by means of the distribution coefficient logD 7.4 and an ultrafiltration method was used to determine binding to human plasma proteins. Biodistribution studies and static µSPECT/CT-imaging were performed at 6 h p.i. on LNCaP tumor-bearing CB17-SCID mice. Results The novel N4-PSMA tracers were readily labeled with [99mTc]TcO4 − with RCP > 95%. Comparable and high PSMA affinity was observed for all [99mTc]Tc-N4-PSMA-ligands. The ligands showed variable binding to human plasma and medium to low lipophilicity (logD 7.4 − 2.6 to − 3.4), both consistently decreased compared to [99mTc]Tc-PSMA-I&S. Biodistribution studies revealed comparable tumor uptake among all [99mTc]Tc-N4-PSMA-ligands and [99mTc]Tc-PSMA-I&S, while clearance from most organs was superior for the novel tracers. Accordingly, increased TBR were achieved. [99mTc]Tc-N4-PSMA-12 showed higher TBR than [99mTc]Tc-PSMA-I&S for blood and all evaluated tissue. In addition, a procedure suitable for routine clinical production of [99mTc]Tc-N4-PSMA-12 was established. Labeling with 553 ± 187 MBq was achieved with RCP of 98.5 ± 0.6% (n = 10). Conclusion High tumor accumulation and favorable clearance from blood and non-target tissue make [99mTc]Tc-N4-PSMA-12 an attractive tracer for RGS, possibly superior to currently established [99mTc]Tc-PSMA-I&S. Its GMP-production according to a method presented here and first clinical investigations with this novel radioligand is highly recommended.
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- 2023
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20. Improving VAE based molecular representations for compound property prediction
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Ani Tevosyan, Lusine Khondkaryan, Hrant Khachatrian, Gohar Tadevosyan, Lilit Apresyan, Nelly Babayan, Helga Stopper, and Zaven Navoyan
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Variational autoencoders ,Vector representation ,Transfer learning ,Property prediction ,Information technology ,T58.5-58.64 ,Chemistry ,QD1-999 - Abstract
Abstract Collecting labeled data for many important tasks in chemoinformatics is time consuming and requires expensive experiments. In recent years, machine learning has been used to learn rich representations of molecules using large scale unlabeled molecular datasets and transfer the knowledge to solve the more challenging tasks with limited datasets. Variational autoencoders are one of the tools that have been proposed to perform the transfer for both chemical property prediction and molecular generation tasks. In this work we propose a simple method to improve chemical property prediction performance of machine learning models by incorporating additional information on correlated molecular descriptors in the representations learned by variational autoencoders. We verify the method on three property prediction tasks. We explore the impact of the number of incorporated descriptors, correlation between the descriptors and the target properties, sizes of the datasets etc. Finally, we show the relation between the performance of property prediction models and the distance between property prediction dataset and the larger unlabeled dataset in the representation space.
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- 2022
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21. Bulk structural informations from density functionals for patchy particles
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Stopper, Daniel, Hirschmann, Frank, Oettel, Martin, and Roth, Roland
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Condensed Matter - Soft Condensed Matter - Abstract
We investigate bulk structural properties of tetravalent associating particles within the framework of classical density functional theory, building upon Wertheim's thermodynamic perturbation theory. To this end, we calculate density profiles within an effective test-particle geometry and compare to radial distribution functions obtained from computer simulations. We demonstrate that a modified version of the functional proposed by Yu and Wu [J. Chem. Phys. 116, 7094 (2002)] based on fundamental measure theory for hard spheres produces accurate results, although the functional does not satisfy the exactly known low-density limit. However, at low temperatures where particles start to form an amorphous tetrahedral network, quantitative differences between simulations and theory emerge due to the absence of geometrical informations regarding the patch arrangement in the latter. Indeed, here we find that the theory fits better to simulations of the floating-bond model [J. Chem. Phys. 127, 174501 (2007)], which exhibits a weaker tetrahedral order due to more flexible bonds between particles. We also demonstrate that another common density functional approach by Segura \textit{et al.} [Mol. Phys. 90, 759 (1997)] fails to capture fundamental structural properties.
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- 2018
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22. Bulk dynamics of Brownian hard disks: Dynamical density functional theory versus experiments on two-dimensional colloidal hard spheres
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Stopper, Daniel, Thorneywork, Alice, Dullens, Roel, and Roth, Roland
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Condensed Matter - Soft Condensed Matter - Abstract
Using dynamical density functional theory (DDFT), we theoretically study Brownian self-diffusion and structural relaxation of hard disks and compare to experimental results on quasi two-dimensional colloidal hard spheres. To this end, we calculate the self and distinct van Hove correlation functions by extending a recently proposed DDFT-approach for three-dimensional systems to two dimensions. We find that the theoretical results for both self- and distinct part of the van Hove function are in very good quantitative agreement with the experiments up to relatively high fluid packing fractions of roughly 0.60. However, at even higher densities, deviations between experiment and the theoretical approach become clearly visible. Upon increasing packing fraction, in experiments the short-time self diffusive behavior is strongly affected by hydrodynamic effects and leads to a significant decrease in the respective mean-squared displacement. In contrast, and in accordance with previous simulation studies, the present DDFT which neglects hydrodynamic effects, shows no dependence on the particle density for this quantity.
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- 2018
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23. Nonequilibrium phase transitions of sheared colloidal microphases: Results from dynamical density functional theory
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Stopper, Daniel and Roth, Roland
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Condensed Matter - Soft Condensed Matter - Abstract
By means of classical density functional theory and its dynamical extension, we consider a colloidal fluid with spherically-symmetric competing interactions, which are well known to exhibit a rich bulk phase behavior. This includes complex three-dimensional periodically ordered cluster phases such as lamellae, two-dimensional hexagonally packed cylinders, gyroid structures or spherical micelles. While the bulk phase behavior has been studied extensively in earlier work, in this paper we focus on such structures confined between planar repulsive walls under shear flow. For sufficiently high shear rates, we observe that microphase separation can become fully suppressed. For lower shear rates, however, we find that e.g. the gyroid structure undergoes a kinetic phase transition to a hexagonally packed cylindrical phase, which is found experimentally and theoretically in amphiphilic block copolymer systems. As such, besides the known similarities between the latter and colloidal systems regarding the equilibrium phase behavior, our work reveals further intriguing non-equilibrium relations between copolymer melts and colloidal fluids with competing interactions.
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- 2018
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24. Dynamical density functional theory for dense suspensions of colloidal hard spheres
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Stopper, Daniel, Roth, Roland, and Hansen-Goos, Hendrik
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Condensed Matter - Soft Condensed Matter - Abstract
We study structural relaxation of colloidal hard spheres undergoing Brownian motion using dynamical density functional theory. Contrary to the partial linearization route [Stopper {\em et al.}, Phys. Rev. E {\bf 92}, 022151 (2015)] which amounts to using different free energy functionals for the self and distinct part of the van Hove function $G(r,t)$, we put forward a unified description employing a single functional for both components. To this end, interactions within the self part are removed via the zero-dimensional limit of the functional with a quenched self component. In addition, we make use of a theoretical result for the long-time mobility in hard-sphere suspensions, which we adapt to the inhomogeneous fluid. Our results for $G(r,t)$ are in excellent agreement with numerical simulations even in the dense liquid phase. In particular, our theory accurately yields the crossover from free diffusion at short times to the slower long-time diffusion in a crowded environment.
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- 2018
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25. Modeling diffusion in colloidal suspensions by dynamical density functional theory using fundamental measure theory of hard spheres
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Stopper, Daniel, Marolt, Kevin, Hansen-Goos, Hendrik, and Roth, Roland
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Condensed Matter - Soft Condensed Matter - Abstract
We study the dynamics of colloidal suspensions of hard spheres that are subject to Brownian motion in the overdamped limit. We obtain the time evolution of the self and distinct parts of the van Hove function by means of dynamical density functional theory (DDFT). The free energy model for the hard sphere fluid that we use is the very accurate White Bear II version of Rosenfeld's fundamental measure theory. However, in order to remove interactions within the self part of the van Hove function a non-trivial modification has to be applied to the free energy functional. We compare our theoretical results with data that we obtain from dynamical Monte Carlo simulations and find that the latter are well described by our approach even for colloid packing fractions as large as 40%.
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- 2018
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26. Letter to the Editor: 'Systemic Inflammation Response Index and Systemic Immune Inflammation Index Are Associated with Clinical Outcomes in Patients with Acute Pancreatitis'
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Justin S. Roskam, John M. Adams, Rolando H. Rolandelli, Louis T. Difazio, Patricia B. Stopper, and Zoltan H. Nemeth
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Surgery ,RD1-811 - Published
- 2023
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27. Multivalent Ion-Activated Protein Adsorption Reflecting Bulk Reentrant Behavior
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Fries, Madeleine R., Stopper, Daniel, Braun, Michal K., Hinderhofer, Alexander, Zhang, Fajun, Jacobs, Robert M. J., Skoda, Maximilian W. A., Hansen-Goos, Hendrik, Roth, Roland, and Schreiber, Frank
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Physics - Biological Physics ,Condensed Matter - Soft Condensed Matter - Abstract
Protein adsorption at the solid-liquid interface is an important phenomenon that often can be observed as a first step in biological processes. Despite its inherent importance, still relatively little is known about the underlying microscopic mechanisms. Here, using multivalent ions, we demonstrate the control of the interactions and the corresponding adsorption of net-negatively charged proteins (bovine serum albumin) at a solid-liquid interface. This is demonstrated by ellipsometry and corroborated by neutron reflectivity and quartz-crystal microbalance experiments. We show that the reentrant condensation observed within the rich bulk phase behavior of the system featuring a nonmonotonic dependence of the second virial cofficient on salt concentration c_s is reflected in an intriguing way in the protein adsorption d(c_s) at the interface. Our findings are successfully described and understood by a model of ion-activated patchy interactions within the framework of classical density functional theory. In addition to the general challenge of connecting bulk and interface behavior, our work has implications for, inter alia, nucleation at interfaces., Comment: 5 pages, 3 Figures, accepted by Phys. Rev. Lett
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- 2017
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28. Tetherin Restricts SARS-CoV-2 despite the Presence of Multiple Viral Antagonists
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Elena Hagelauer, Rishikesh Lotke, Dorota Kmiec, Dan Hu, Mirjam Hohner, Sophie Stopper, Rayhane Nchioua, Frank Kirchhoff, Daniel Sauter, and Michael Schindler
- Subjects
SARS-CoV ,SARS-CoV-2 ,Tetherin ,BST2 ,Spike ,ORF7a ,Microbiology ,QR1-502 - Abstract
Coronavirus infection induces interferon-stimulated genes, one of which encodes Tetherin, a transmembrane protein inhibiting the release of various enveloped viruses from infected cells. Previous studies revealed that SARS-CoV encodes two Tetherin antagonists: the Spike protein (S), inducing lysosomal degradation of Tetherin, and ORF7a, altering its glycosylation. Similarly, SARS-CoV-2 has also been shown to use ORF7a and Spike to enhance virion release in the presence of Tetherin. Here, we directly compare the abilities and mechanisms of these two viral proteins to counteract Tetherin. Therefore, cell surface and total Tetherin levels upon ORF7a or S expression were investigated using flow cytometry and Western blot analysis. SARS-CoV and SARS-CoV-2 S only marginally reduced Tetherin cell surface levels in a cell type-dependent manner. In HEK293T cells, under conditions of high exogenous Tetherin expression, SARS-CoV-2 S and ORF7a reduced total cellular Tetherin levels much more efficiently than the respective counterparts derived from SARS-CoV. Nevertheless, ORF7a from both species was able to alter Tetherin glycosylation. The ability to decrease total protein levels of Tetherin was conserved among S proteins from different SARS-CoV-2 variants (α, γ, δ, ο). While SARS-CoV-2 S and ORF7a both colocalized with Tetherin, only ORF7a directly interacted with the restriction factor in a two-hybrid assay. Despite the presence of multiple Tetherin antagonists, SARS-CoV-2 replication in Caco-2 cells was further enhanced upon Tetherin knockout. Altogether, our data show that endogenous Tetherin restricts SARS-CoV-2 replication and that the antiviral activity of Tetherin is only partially counteracted by viral antagonists with differential and complementary modes of action.
- Published
- 2023
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29. Differential Modulation of Markers of Oxidative Stress and DNA Damage in Arterial Hypertension
- Author
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Moritz Kreutzmann, Bettina J. Kraus, Martin Christa, Stefan Störk, Eugène H. J. M. Jansen, Helga Stopper, and Nicole Schupp
- Subjects
high blood pressure ,3-nitrotyrosine ,8-oxodG ,SHp ,γ-H2AX ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Patients with arterial hypertension have an increased risk of developing tumors, particularly renal cell carcinoma. Arterial hypertension is linked to DNA damage via the generation of oxidative stress, in which an upregulated renin–angiotensin–aldosterone system plays a crucial role. The current study investigated surrogates of oxidative stress and DNA damage in a group of hypertensive patients (HypAll, n = 64) and subgroups of well (HypWell, n = 36) and poorly (HypPoor, n = 28) controlled hypertensive patients compared to healthy controls (n = 8). In addition, a longitudinal analysis was performed with some of the hypertensive patients. Markers for oxidative stress in plasma (SHp, D-ROM, and 3-nitrotyrosine) and urine (8-oxodG, 15-F2t-isoprostane, and malondialdehyde) and markers for DNA damage in lymphocytes (γ-H2AX and micronuclei) were measured. In HypAll, all markers of oxidative stress except malondialdehyde were increased compared to the controls. After adjustment for age, this association was maintained for the protein stress markers SHp and 3-nitrotyrosine. With regard to the markers for DNA damage, there was no difference between HypAll and the controls. Further, no significant differences became apparent in the levels of both oxidative stress and DNA damage between HypWell and HypPoor. Finally, a positive correlation between the development of blood pressure and oxidative stress was observed in the longitudinal study based on the changes in D-ROM and systolic blood pressure. In conclusion, we found increased oxidative stress in extensively treated hypertensive patients correlating with the level of blood-pressure control but no association with DNA damage.
- Published
- 2023
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- View/download PDF
30. Improving VAE based molecular representations for compound property prediction
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Tevosyan, Ani, Khondkaryan, Lusine, Khachatrian, Hrant, Tadevosyan, Gohar, Apresyan, Lilit, Babayan, Nelly, Stopper, Helga, and Navoyan, Zaven
- Published
- 2022
- Full Text
- View/download PDF
31. Cell survival after DNA damage in the comet assay
- Author
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Bankoglu, Ezgi Eyluel, Schuele, Carolin, and Stopper, Helga
- Published
- 2021
- Full Text
- View/download PDF
32. Datasets Construction and Development of QSAR Models for Predicting Micronucleus In Vitro and In Vivo Assay Outcomes
- Author
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Lusine Khondkaryan, Ani Tevosyan, Hayk Navasardyan, Hrant Khachatrian, Gohar Tadevosyan, Lilit Apresyan, Gayane Chilingaryan, Zaven Navoyan, Helga Stopper, and Nelly Babayan
- Subjects
micronucleus ,in vitro ,in vivo ,prediction ,ensemble ,chemotypes analysis ,Chemical technology ,TP1-1185 - Abstract
In silico (quantitative) structure–activity relationship modeling is an approach that provides a fast and cost-effective alternative to assess the genotoxic potential of chemicals. However, one of the limiting factors for model development is the availability of consolidated experimental datasets. In the present study, we collected experimental data on micronuclei in vitro and in vivo, utilizing databases and conducting a PubMed search, aided by text mining using the BioBERT large language model. Chemotype enrichment analysis on the updated datasets was performed to identify enriched substructures. Additionally, chemotypes common for both endpoints were found. Five machine learning models in combination with molecular descriptors, twelve fingerprints and two data balancing techniques were applied to construct individual models. The best-performing individual models were selected for the ensemble construction. The curated final dataset consists of 981 chemicals for micronuclei in vitro and 1309 for mouse micronuclei in vivo, respectively. Out of 18 chemotypes enriched in micronuclei in vitro, only 7 were found to be relevant for in vivo prediction. The ensemble model exhibited high accuracy and sensitivity when applied to an external test set of in vitro data. A good balanced predictive performance was also achieved for the micronucleus in vivo endpoint.
- Published
- 2023
- Full Text
- View/download PDF
33. Optimization of anemia treatment in hemodialysis patients via reinforcement learning
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Escandell-Montero, Pablo, Chermisi, Milena, Martínez-Martínez, José M., Gómez-Sanchis, Juan, Barbieri, Carlo, Soria-Olivas, Emilio, Mari, Flavio, Vila-Francés, Joan, Stopper, Andrea, Gatti, Emanuele, and Martín-Guerrero, José D.
- Subjects
Statistics - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Learning - Abstract
Objective: Anemia is a frequent comorbidity in hemodialysis patients that can be successfully treated by administering erythropoiesis-stimulating agents (ESAs). ESAs dosing is currently based on clinical protocols that often do not account for the high inter- and intra-individual variability in the patient's response. As a result, the hemoglobin level of some patients oscillates around the target range, which is associated with multiple risks and side-effects. This work proposes a methodology based on reinforcement learning (RL) to optimize ESA therapy. Methods: RL is a data-driven approach for solving sequential decision-making problems that are formulated as Markov decision processes (MDPs). Computing optimal drug administration strategies for chronic diseases is a sequential decision-making problem in which the goal is to find the best sequence of drug doses. MDPs are particularly suitable for modeling these problems due to their ability to capture the uncertainty associated with the outcome of the treatment and the stochastic nature of the underlying process. The RL algorithm employed in the proposed methodology is fitted Q iteration, which stands out for its ability to make an efficient use of data. Results: The experiments reported here are based on a computational model that describes the effect of ESAs on the hemoglobin level. The performance of the proposed method is evaluated and compared with the well-known Q-learning algorithm and with a standard protocol. Simulation results show that the performance of Q-learning is substantially lower than FQI and the protocol. Conclusion: Although prospective validation is required, promising results demonstrate the potential of RL to become an alternative to current protocols., Comment: 17 pages, 10 figures
- Published
- 2015
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34. Effect of cryopreservation on DNA damage and DNA repair activity in human blood samples in the comet assay
- Author
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Bankoglu, Ezgi Eyluel, Stipp, Franzisca, Gerber, Johanna, Seyfried, Florian, Heidland, August, Bahner, Udo, and Stopper, Helga
- Published
- 2021
- Full Text
- View/download PDF
35. Micronucleus frequency in buccal mucosa cells of patients with neurodegenerative diseases
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Hauke Reimann, Helga Stopper, Thomas Polak, Martin Lauer, Martin J. Herrmann, Jürgen Deckert, and Henning Hintzsche
- Subjects
Medicine ,Science - Abstract
Abstract Neurodegenerative diseases show an increase in prevalence and incidence, with the most prominent example being Alzheimer’s disease. DNA damage has been suggested to play a role in the pathogenesis, but the exact mechanisms remain elusive. We enrolled 425 participants with and without neurodegenerative diseases and analyzed DNA damage in the form of micronuclei in buccal mucosa samples. In addition, other parameters such as binucleated cells, karyolytic cells, and karyorrhectic cells were quantified. No relevant differences in DNA damage and cytotoxicity markers were observed in patients compared to healthy participants. Furthermore, other parameters such as lifestyle factors and diseases were also investigated. Overall, this study could not identify a direct link between changes in buccal cells and neurogenerative diseases, but highlights the influence of lifestyle factors and diseases on the human buccal cytome.
- Published
- 2020
- Full Text
- View/download PDF
36. Cytokinesis-block micronucleus assay of celecoxib and celecoxib derivatives
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Hauke Reimann, Quoc Anh Ngo, Helga Stopper, and Henning Hintzsche
- Subjects
Celecoxib ,DNA damage ,Micronucleus test ,Chemoprevention ,Toxicology. Poisons ,RA1190-1270 - Abstract
Celecoxib is used widely for the acute treatment of pain and for pain relief in various diseases. Furthermore, it shows potential in chemoprevention, although chronic treatment with celecoxib could lead to adverse effects like cardiovascular events. New derivatives of celecoxib were synthesised that may be suitable as chemopreventive agent without inducing adverse effects.Critical endpoint for a safe use of pharmaceuticals is genotoxicity after application. A standard test for the assessment of genotoxicity is the cytokinesis-block micronucleus assay, that evaluates the number micronuclei after treatment of cells with a test compound as biomarker for DNA damage. Various promising derivatives of celecoxib have been assessed with the cytokinesis-block micronucleus assay in HeLa-H2B-GFP cells. It could be demonstrated, that neither celecoxib nor its derivatives were genotoxic in this assay and therefore celecoxib derivatives could be developed further for a safe use as chemopreventive agent.
- Published
- 2020
- Full Text
- View/download PDF
37. Astrocytes and Microglia Exhibit Cell-Specific Ca2+ Signaling Dynamics in the Murine Spinal Cord
- Author
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Phillip Rieder, Davide Gobbo, Gebhard Stopper, Anna Welle, Elisa Damo, Frank Kirchhoff, and Anja Scheller
- Subjects
spinal cord ,astrocytes ,microglia ,Ca2+ ,laminectomy ,slice preparation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The spinal cord is the main pathway connecting brain and peripheral nervous system. Its functionality relies on the orchestrated activity of both neurons and glial cells. To date, most advancement in understanding the spinal cord inner mechanisms has been made either by in vivo exposure of its dorsal surface through laminectomy or by acute ex vivo slice preparation, likely affecting spinal cord physiology in virtue of the necessary extensive manipulation of the spinal cord tissue. This is especially true of cells immediately responding to alterations of the surrounding environment, such as microglia and astrocytes, reacting within seconds or minutes and for up to several days after the original insult. Ca2+ signaling is considered one of the most immediate, versatile, and yet elusive cellular responses of glia. Here, we induced the cell-specific expression of the genetically encoded Ca2+ indicator GCaMP3 to evaluate spontaneous intracellular Ca2+ signaling in astrocytes and microglia. Ca2+ signals were then characterized in acute ex vivo (both gray and white matter) as well as in chronic in vivo (white matter) preparations using MSparkles, a MATLAB-based software for automatic detection and analysis of fluorescence events. As a result, we were able to segregate distinct astroglial and microglial Ca2+ signaling patterns along with method-specific Ca2+ signaling alterations, which must be taken into consideration in the reliable evaluation of any result obtained in physiological as well as pathological conditions. Our study revealed a high degree of Ca2+ signaling diversity in glial cells of the murine spinal cord, thus adding to the current knowledge of the astonishing glial heterogeneity and cell-specific Ca2+ dynamics in non-neuronal networks.
- Published
- 2022
- Full Text
- View/download PDF
38. Minimum Information for Reporting on the Comet Assay (MIRCA): recommendations for describing comet assay procedures and results
- Author
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Møller, Peter, Azqueta, Amaya, Boutet-Robinet, Elisa, Koppen, Gudrun, Bonassi, Stefano, Milić, Mirta, Gajski, Goran, Costa, Solange, Teixeira, João Paulo, Costa Pereira, Cristiana, Dusinska, Maria, Godschalk, Roger, Brunborg, Gunnar, Gutzkow, Kristine B., Giovannelli, Lisa, Cooke, Marcus S., Richling, Elke, Laffon, Blanca, Valdiglesias, Vanessa, Basaran, Nursen, Del Bo’, Cristian, Zegura, Bojana, Novak, Matjaz, Stopper, Helga, Vodicka, Pavel, Vodenkova, Sona, de Andrade, Vanessa Moraes, Sramkova, Monika, Gabelova, Alena, Collins, Andrew, and Langie, Sabine A. S.
- Published
- 2020
- Full Text
- View/download PDF
39. Long-term fate of etoposide-induced micronuclei and micronucleated cells in Hela-H2B-GFP cells
- Author
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Reimann, Hauke, Stopper, Helga, and Hintzsche, Henning
- Published
- 2020
- Full Text
- View/download PDF
40. Ochratoxin A induces global DNA hypomethylation and oxidative stress in neuronal cells in vitro
- Author
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Babayan, Nelly, Tadevosyan, Gohar, Khondkaryan, Lusine, Grigoryan, Ruzanna, Sarkisyan, Natalya, Haroutiounian, Rouben, and Stopper, Helga
- Published
- 2020
- Full Text
- View/download PDF
41. Versatile Surface Electrodes for Combined Electrophysiology and Two-Photon Imaging of the Mouse Central Nervous System
- Author
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Michael Schweigmann, Laura C. Caudal, Gebhard Stopper, Anja Scheller, Klaus P. Koch, and Frank Kirchhoff
- Subjects
liquid crystal polymer electrodes ,cortical stimulation ,electrocorticogram ,in vivo two-photon laser-scanning microscopy ,neuron-glia interaction ,astrocytes ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Understanding and modulating CNS function in physiological as well as pathophysiological contexts remains a significant ambition in research and clinical applications. The investigation of the multifaceted CNS cell types including their interactions and contributions to neural function requires a combination of the state-of-the-art in vivo electrophysiology and imaging techniques. We developed a novel type of liquid crystal polymer (LCP) surface micro-electrode manufactured in three customized designs with up to 16 channels for recording and stimulation of brain activity. All designs include spare central spaces for simultaneous 2P-imaging. Nanoporous platinum-plated contact sites ensure a low impedance and high current transfer. The epidural implantation of the LCP micro-electrodes could be combined with standard cranial window surgery. The epidurally positioned electrodes did not only display long-term biocompatibility, but we also observed an additional stabilization of the underlying CNS tissue. We demonstrate the electrode’s versatility in combination with in vivo 2P-imaging by monitoring anesthesia-awake cycles of transgenic mice with GCaMP3 expression in neurons or astrocytes. Cortical stimulation and simultaneous 2P Ca2+ imaging in neurons or astrocytes highlighted the astrocytes’ integrative character in neuronal activity processing. Furthermore, we confirmed that spontaneous astroglial Ca2+ signals are dampened under anesthesia, while evoked signals in neurons and astrocytes showed stronger dependency on stimulation intensity rather than on various levels of anesthesia. Finally, we show that the electrodes provide recordings of the electrocorticogram (ECoG) with a high signal-to noise ratio and spatial signal differences which help to decipher brain activity states during experimental procedures. Summarizing, the novel LCP surface micro-electrode is a versatile, convenient, and reliable tool to investigate brain function in vivo.
- Published
- 2021
- Full Text
- View/download PDF
42. Optimization of the Pharmacokinetic Profile of [99mTc]Tc-N4-Bombesin Derivatives by Modification of the Pharmacophoric Gln-Trp Sequence
- Author
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Thomas Günther, Matthias Konrad, León Stopper, Jan-Philip Kunert, Sebastian Fischer, Roswitha Beck, Angela Casini, and Hans-Jürgen Wester
- Subjects
GRPR ,technetium-99m ,pharmacophore-modified compounds ,prostate cancer ,breast cancer ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
Current radiolabeled gastrin-releasing peptide receptor (GRPR) ligands usually suffer from high accumulation in GRPR-positive organs (pancreas, stomach), limiting tumor-to-background contrast in the abdomen. In novel N4-bombesin derivatives this was addressed by substitutions at the Gln7-Trp8 site within the MJ9 peptide (H-Pip5-phe6-Gln7-Trp8-Ala9-Val10-Gly11-His12-Sta13-Leu14-NH2) either by homoserine (Hse7), β-(3-benzothienyl) alanine (Bta8) or α-methyl tryptophan (α-Me-Trp8), with the aim of optimizing pharmacokinetics. We prepared and characterized the peptide conjugates 6-carboxy-1,4,8,11-tetraazaundecane (N4)-asp-MJ9, N4-asp-[Bta8]MJ9, N4-[Hse7]MJ9 and N4-[α-Me-Trp8]MJ9, and evaluated these compounds in vitro (GRPR affinity via IC50,inverse; internalization; lipophilicity via logD7.4) and in vivo (biodistribution and μSPECT/CT studies at 1 h post injection (p.i.) in PC-3 tumor-bearing CB17-SCID mice). 99mTc-labeling resulted in radiochemical yields (RCYs) > 95%. All 99mTc-labeled MJ9 analogues showed comparable or higher GRPR affinity than the external reference [99mTc]Tc-Demobesin 4. Receptor-bound fractions were noticeably higher than that of the reference. Despite a slightly enhanced lipophilicity, all novel MJ9 derivatives revealed improved in vivo pharmacokinetics compared to the reference. The Bta8-modified ligand revealed the most favorable tumor-to-abdomen contrast at 1 h p.i. Substitutions at the Gln7-Trp8 site within GRPR ligands hold great potential to modify pharmacokinetics for improved imaging.
- Published
- 2022
- Full Text
- View/download PDF
43. Abdominal Instillation of Crystalloid Fluid Decreases the Recurrence of Adhesive Small Bowel Obstruction
- Author
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Nemeth, Zoltan H., Flanagan, Joseph S., Stopper, Patricia B., and Rolandelli, Rolando H.
- Abstract
Peritoneal adhesion is a common cause of small bowel obstruction (SBO). In this study, we included 40 adult patients who had SBO, or partial obstructive symptoms. In the abdominal instillation of crystalloid fluid (AICF) cohort, 16 patients underwent lysis of adhesions and abdominal crystalloid fluid instillation at the end of the procedure. In the control (CO) group, 24 patients received lysis of adhesions without fluid instillation. AICF was achieved by the abdominal instillation of 1864 ± 97.5 mL of crystalloid fluid. We analyzed the recurrence of peritoneal adhesions resulting in reoperation for SBO within the 64.3 ± 9.15 months of follow-up time for the CO and the 70.5 ± 13.16-month follow-up for the AICF group. The AICF group had a lower SBO recurrence rate of 12.5% compared to the CO group’s 41.6% rate (P= .049). Taken together, AICF decreased the recurrence of SBO requiring reoperation secondary to adhesion formation compared to the lysis of adhesions alone, as seen in the CO group.
- Published
- 2024
- Full Text
- View/download PDF
44. Synthesis, Antiplasmodial, and Antileukemia Activity of Dihydroartemisinin–HDAC Inhibitor Hybrids as Multitarget Drugs
- Author
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Lukas von Bredow, Thomas Martin Schäfer, Julian Hogenkamp, Maik Tretbar, Daniel Stopper, Fabian B. Kraft, Julian Schliehe-Diecks, Andrea Schöler, Arndt Borkhardt, Sanil Bhatia, Jana Held, and Finn K. Hansen
- Subjects
histone deacetylase ,artemisinin ,multitarget drugs ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
Artemisinin-based combination therapies (ACTs) are the gold standard for the treatment of malaria, but the efficacy is threatened by the development of parasite resistance. Histone deacetylase inhibitors (HDACis) are an emerging new class of potential antiplasmodial drugs. In this work, we present the design, synthesis, and biological evaluation of a mini library of dihydroartemisinin–HDACi hybrid molecules. The screening of the hybrid molecules for their activity against selected human HDAC isoforms, asexual blood stage P. falciparum parasites, and a panel of leukemia cell lines delivered important structure–activity relationships. All synthesized compounds demonstrated potent activity against the 3D7 and Dd2 line of P. falciparum with IC50 values in the single-digit nanomolar range. Furthermore, the hybrid (α)-7c displayed improved activity against artemisinin-resistant parasites compared to dihydroartemisinin. The screening of the compounds against five cell lines from different leukemia entities revealed that all hydroxamate-based hybrids (7a–e) and the ortho-aminoanilide 8 exceeded the antiproliferative activity of dihydroartemisinin in four out of five cell lines. Taken together, this series of hybrid molecules represents an excellent starting point toward the development of antimalarial and antileukemia drug leads.
- Published
- 2022
- Full Text
- View/download PDF
45. Micronucleus frequency in buccal mucosa cells of patients with neurodegenerative diseases
- Author
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Reimann, Hauke, Stopper, Helga, Polak, Thomas, Lauer, Martin, Herrmann, Martin J., Deckert, Jürgen, and Hintzsche, Henning
- Published
- 2020
- Full Text
- View/download PDF
46. Integrated structural and functional analysis of the protective effects of kinetin against oxidative stress in mammalian cellular systems
- Author
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Naseem, Muhammad, Othman, Eman M., Fathy, Moustafa, Iqbal, Jibran, Howari, Fares M., AlRemeithi, Fatima A., Kodandaraman, Geema, Stopper, Helga, Bencurova, Elena, Vlachakis, Dimitrios, and Dandekar, Thomas
- Published
- 2020
- Full Text
- View/download PDF
47. Enhanced protein adsorption upon bulk phase separation
- Author
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Fries, Madeleine R., Stopper, Daniel, Skoda, Maximilian W. A., Blum, Matthias, Kertzscher, Christoph, Hinderhofer, Alexander, Zhang, Fajun, Jacobs, Robert M. J., Roth, Roland, and Schreiber, Frank
- Published
- 2020
- Full Text
- View/download PDF
48. Exposure Setup and Dosimetry for a Study on Effects of Mobile Communication Signals on Human Hematopoietic Stem Cells in vitro
- Author
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M. Rohland, K. Baaske, K. Gläser, H. Hintzsche, H. Stopper, T. Kleine-Ostmann, and T. Schrader
- Subjects
Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
In this paper we describe the design of an exposure setup used to study possible non-thermal effects due to the exposure of human hematopoietic stem cells to GSM, UMTS and LTE mobile communication signals. The experiments are performed under fully blinded conditions in a TEM waveguide located inside an incubator to achieve defined environmental conditions as required for the living cells. Chamber slides containing the cells in culture medium are placed on the septum of the waveguide. The environmental and exposure parameters such as signal power, temperatures, relative humidity and CO2 content of the surrounding atmosphere are monitored permanently during the exposure experiment. The power of the exposure signals required to achieve specific absorption rates of 0.5, 1, 2 and 4 W kg−1 are determined by numerical calculation of the field distribution inside the cell culture medium at 900 MHz (GSM), 1950 MHz (UMTS) and 2535 MHz (LTE). The dosimetry is verified both with scattering parameter measurements on the waveguide with and without containers filled with cell culture medium and with temperature measurements with non-metallic probes in separate heating experiments.
- Published
- 2017
- Full Text
- View/download PDF
49. Schicksal von Mikrokernen und mikrokernhaltigen Zellen
- Author
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Hintzsche, Henning, Reimann, Hauke, and Stopper, Helga
- Published
- 2018
- Full Text
- View/download PDF
50. A Case Study in Elementary Statistics: The Florida Panther Population
- Author
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Lazowski, Andrew and Stopper, Geffrey
- Abstract
We describe a case study that was created to intertwine the fields of biology and mathematics. This project is given in an elementary probability and statistics course for non-math majors. Some goals of this case study include: to expose students to biology in a math course, to apply probability to real-life situations, and to display how far a semester's worth of mathematics can reach. This was done by exploring the Florida panther population. We will discuss various aspects of the case study and results from administering this project. (Contains 1 table and 2 figures.)
- Published
- 2013
- Full Text
- View/download PDF
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