87 results on '"Stewart-Jones, G"'
Search Results
2. Neutralizing antibodies elicited in rabbits by patient-derived Env trimer immunization
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Heyndrickx L, Stewart-Jones G, Schuitemaker H, Bowles E, Buonaguro L, Jansson M, Grevstad B, Vinner L, Ramaswamy M, Biswas P, Scarlatti G, Vanham G, and Fomsgaard A
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Immunologic diseases. Allergy ,RC581-607 - Published
- 2012
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3. P16-23. Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance
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McMichael AJ, Jones EY, Fugger L, Klenerman P, Akkad N, Gerstoft J, Weimershaus M, Harndahl M, Chang C, Lamberth K, Friis L, Stewart-Jones G, Burgevin A, Wee E, Tenzer S, Buus S, Schild H, van Endert P, and Iversen AK
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Immunologic diseases. Allergy ,RC581-607 - Published
- 2009
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4. Structural features of immunodominant viral peptides presented by HLA-B27: 4.1
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Bowness, P., Stewart-Jones, G. B. E., di. Gleria, K., Kollnberger, S., McMichael, A. J., and Jones, E. Y.
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- 2004
5. HIV-specific cytotoxic T-cells from long-term survivors select a unique T-cell receptor
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Dong, T., Stewart-Jones, G., Chen, N., Easterbrook, P., Xu, X., Papagno, L., Appay, V., Weekes, M., Conlon, C., Spina, C., Little, S., Screaton, G., Richman, D. D., McMichael, A. J., Jones, E. Y., and Rowland-Jones, S. L.
- Published
- 2004
6. Cryo-EM structure of Human Parainfluenza Virus Type 3 (hPIV3) in complex with antibody PIA174
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Acharya, P., primary, Stewart-Jones, G., additional, Carragher, B., additional, Potter, C.S., additional, and Kwong, P.D., additional
- Published
- 2018
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7. Rational development of high-affinity T-cell receptor-like antibodies (Proceedings of the National Academy of Sciences of the United States of America (2009) 106, 14, (5784-5788) DOI: 10.1073/pnas.0901425106)
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Stewart-Jones, G, Wadle, A, Hombach, A, Shenderov, E, Held, G, Fischer, E, Kleber, S, Nuber, N, Stenner-Liewen, F, Bauer, S, McMichael, A, Knuth, A, Abken, H, Hombach, AA, Cerundolo, V, Jones, EY, and Renner, C
- Published
- 2016
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8. Antigen processing shapes HIV-specific CTL-response hierarchies
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Tenzer, S, Wee, E, Burgevin, A, Stewart-Jones, G, Friis, L, Lamberth, K, Chang, C, Harndahl, M, Gerstoft, J, Fugger, L, Jones, E, Mcmichael, AJ, Buus, S, Schild, H, van Endert, P, and Iversen, AK
- Published
- 2016
9. MHC-peptide-specific antibodies reveal inefficient presentation of an HLA-A*0201-restricted, Melan-A-derived peptide after active intracellular processing (vol 37, pg 2008, 2007)
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Held, G, Wadle, A, Dauth, N, Stewart-Jones, G, Sturm, C, Thiel, M, Zwick, C, Dieckmann, D, Schuler, G, Hoogenboom, HR, Levy, F, Cerundolo, V, Pfreundschuh, M, and Renner, C
- Published
- 2016
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10. Erratum: MHC-peptide-specific antibodies reveal inefficient presentation of an HLA-A*0201-restricted, Melan-A-derived peptide after active intracellular processing (European Journal of Immunology (2007) vol. 37 (7) 10.1002/eji.200636545)
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Held, G, Wadle, A, Dauth, N, Stewart-Jones, G, Sturm, C, Thiel, M, Zwich, C, Dieckmann, D, Schuler, G, Hoogenboom, HR, Levy, F, Cerundolo, V, Pfreundschuh, M, and Renner, C
- Published
- 2016
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11. Refocusing the Antibody Response: The Use of an Antibody-Masking Technique to Elicit Broadly Neutralizing Antibodies
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Wan, D, McMichael, S, and Stewart-Jones, G
- Published
- 2016
12. Evolution of Human Immunodeficiency Virus Type 1 in a Patient with Cross-Reactive Neutralizing Activity in Serum ▿
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van Gils, M. J., Edo-Matas, D., Bowles, E. J., Burger, J. A., Stewart-Jones, G. B., and Schuitemaker, H.
- Published
- 2011
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13. Focusing Antibody Responses to Specific Protein Surfaces Through Site-Selective Glycan Addition
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Schiffner, T, Leonavicius, K, Schuster, H, Kong, L, Saliba, R, Wegmann, F, Huang, P, Stewart-Jones, G, Schief, W, Davis, B, and Sattentau, Q
- Published
- 2013
14. Antigen-sensitive CD8 T-cell clones with tough HIV-1 suppression
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Glanville, J, Taylor, S, Baban, D, Gillespie, G, Easterbrook, P, Stewart-Jones, G, Simmons, A, Rowland-Jones, S, Dong, T, and McMichael, A
- Published
- 2013
15. Elicitation of Neutralising Antibodies Using Patient-Derived gp140 Immunogens from a Long-Term Non-Progressor
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Bowles, E, Parker, J, Heyndrickx, L, Grevstad, B, Jansson, M, Vanham, G, and Stewart-Jones, G
- Published
- 2011
16. Bispecific Antibodies Targeting Different Epitopes on the HIV-1 Envelope Exhibit Broad and Potent Neutralization
- Author
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Asokan, M., primary, Rudicell, R. S., additional, Louder, M., additional, McKee, K., additional, O'Dell, S., additional, Stewart-Jones, G., additional, Wang, K., additional, Xu, L., additional, Chen, X., additional, Choe, M., additional, Chuang, G., additional, Georgiev, I. S., additional, Joyce, M. G., additional, Kirys, T., additional, Ko, S., additional, Pegu, A., additional, Shi, W., additional, Todd, J. P., additional, Yang, Z., additional, Bailer, R. T., additional, Rao, S., additional, Kwong, P. D., additional, Nabel, G. J., additional, and Mascola, J. R., additional
- Published
- 2015
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17. Rational development of high-affinity T-cell receptor-like antibodies
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Stewart-Jones, G, Wadle, A, Hombach, A, Shenderov, E, Held, G, Fischer, E, Kleber, S, Stenner-Liewen, F, Bauer, S, McMichael, A, Knuth, A, Abken, H, Hombach, A A, Cerundolo, V, Jones, E Y, Renner, C, and University of Zurich
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1000 Multidisciplinary ,10032 Clinic for Oncology and Hematology ,610 Medicine & health - Published
- 2009
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18. Conflicting selective forces affect CD8+ T-cell receptor contact sites in an HLA-A2-immunodominant HIV epitope
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Fugger, Astrid Iversen, Stewart-Jones, G., Learn, G. H., Christie, N., Sylvester-Hviid, C., Armitage, A. E., Kaul, R., Beattie, T., Lee, J. K., Li, Y., Chotiyarnwong, P., Dong, T., Xu, X., Luscher, M. A., MacDonald, K., Ullum, H., Klarund-Pedersen, B., Skinhøj, P., Fugger, Lars Henrik, Buus, S., Mullins, J. I., Jones, E. Y., van der Merwe, P. A., and McMichael, A. J.
- Published
- 2006
19. Antigen processing shapes HIV-specific CTL-response hierarchies
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Tenzer, S., Wee, E., Burgevin, A., Stewart-Jones, G., Friis, L., Lamberth, K., Chang, C., Harndahl, M., Gerstoft, J., Fugger, L., Jones, E., McMichael, A.J., Buus, Soren, Schild, H., Endert, P. van, Iversen, A.K., Tenzer, S., Wee, E., Burgevin, A., Stewart-Jones, G., Friis, L., Lamberth, K., Chang, C., Harndahl, M., Gerstoft, J., Fugger, L., Jones, E., McMichael, A.J., Buus, Soren, Schild, H., Endert, P. van, and Iversen, A.K.
- Abstract
Udgivelsesdato: 2008/8
- Published
- 2008
20. Immune Focusing and Enhanced Neutralization Induced by HIV-1 gp140 Chemical Cross-Linking
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Schiffner, T., primary, Kong, L., additional, Duncan, C. J. A., additional, Back, J. W., additional, Benschop, J. J., additional, Shen, X., additional, Huang, P. S., additional, Stewart-Jones, G. B., additional, DeStefano, J., additional, Seaman, M. S., additional, Tomaras, G. D., additional, Montefiori, D. C., additional, Schief, W. R., additional, and Sattentau, Q. J., additional
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- 2013
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21. Ca2+ release from the endoplasmic reticulum of NY-ESO-1 specific T cells is modulated by the affinity of T cell receptor and by the use of the CD8 co-receptor
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Chen, J.L., primary, Morgan, A.J., additional, Stewart-Jones, G., additional, Shepherd, D., additional, Bossi, G., additional, and Wooldridge, L., additional
- Published
- 2010
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22. P16-23. Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance
- Author
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Tenzer, S, primary, Wee, E, additional, Burgevin, A, additional, Stewart-Jones, G, additional, Friis, L, additional, Lamberth, K, additional, Chang, C, additional, Harndahl, M, additional, Weimershaus, M, additional, Gerstoft, J, additional, Akkad, N, additional, Klenerman, P, additional, Fugger, L, additional, Jones, EY, additional, McMichael, AJ, additional, Buus, S, additional, Schild, H, additional, van Endert, P, additional, and Iversen, AK, additional
- Published
- 2009
- Full Text
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23. Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance
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Stewart-Jones, G., primary, Iversen, A.K.N., additional, and Jones, E.Y., additional
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- 2009
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24. Rational development of high-affinity T-cell receptor-like antibodies
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Stewart-Jones, G., primary, Wadle, A., additional, Hombach, A., additional, Shenderov, E., additional, Held, G., additional, and Fischer, E., additional
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- 2009
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25. The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain
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Ishizuka, J., primary, Stewart-Jones, G., additional, Van Der Merwe, A., additional, Bell, J., additional, Mcmichael, A., additional, and Jones, Y., additional
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- 2008
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26. T CELL CROSS-REACTIVITY AND CONFORMATIONAL CHANGES DURING TCR ENGAGEMENT
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Lee, J.K., primary, Stewart-Jones, G., additional, Dong, T., additional, Harlos, K., additional, Di Gleria, K., additional, Dorrell, L., additional, Douek, D.C., additional, Van Der Merwe, P.A., additional, Jones, E.Y., additional, and Mcmichael, A.J., additional
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- 2007
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27. Crystal Structure of HLA-B5703 and HIV-1 peptide
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Gillespie, G.M.A., primary, Stewart-Jones, G., additional, Rengasamy, J., additional, Beattie, T., additional, Bwayo, J.J., additional, and Plummer, F.A., additional
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- 2006
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28. First steps towards effective methods in exploiting high-throughput technologies for the determination of human protein structures of high biomedical value
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Banci, L., primary, Bertini, I., additional, Cusack, S., additional, de Jong, R. N., additional, Heinemann, U., additional, Jones, E. Y., additional, Kozielski, F., additional, Maskos, K., additional, Messerschmidt, A., additional, Owens, R., additional, Perrakis, A., additional, Poterszman, A., additional, Schneider, G., additional, Siebold, C., additional, Silman, I., additional, Sixma, T., additional, Stewart-Jones, G., additional, Sussman, J. L., additional, Thierry, J.-C., additional, and Moras, Dino, additional
- Published
- 2006
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29. A procedure for setting up high-throughput nanolitre crystallization experiments. II. Crystallization results
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Brown, J., primary, Walter, T. S., additional, Carter, L., additional, Abrescia, N. G. A., additional, Aricescu, A. R., additional, Batuwangala, T. D., additional, Bird, L. E., additional, Brown, N., additional, Chamberlain, P. P., additional, Davis, S. J., additional, Dubinina, E., additional, Endicott, J., additional, Fennelly, J. A., additional, Gilbert, R. J. C., additional, Harkiolaki, M., additional, Hon, W.-C., additional, Kimberley, F., additional, Love, C. A., additional, Mancini, E. J., additional, Manso-Sancho, R., additional, Nichols, C. E., additional, Robinson, R. A., additional, Sutton, G. C., additional, Schueller, N., additional, Sleeman, M. C., additional, Stewart-Jones, G. B., additional, Vuong, M., additional, Welburn, J., additional, Zhang, Z., additional, Stammers, D. K., additional, Owens, R. J., additional, Jones, E. Y., additional, Harlos, K., additional, and Stuart, D. I., additional
- Published
- 2003
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30. T-cell receptor (TCR) usage in HIV-2 infection
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Moysi, E, Rowland-Jones, S, Dong, T, and Stewart-Jones, G
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Vaccinology ,Medical Sciences ,Viruses ,Immunology ,Infectious diseases ,HIV/AIDS - Abstract
Long-term non-progressors (LTPNs) in HIV infection target the structural protein Gag more frequently than individuals who progress to disease. However, the targeting of Gag per se does not always distinguish these two groups. Various factors have been put forth as likely explanations for this discrepancy including differences in the breadth and magnitude of observed responses, the HLA type of the host, the nature of the individual epitopes targeted and the ability of the virus to mutate these antigenic regions. The purpose of this thesis was to examine, using PBMCs isolated from HIV-2 infected LTNPs and CTL clones established in vitro, the clonotypic architecture and quality of an immunodominant HIV-2 Gag-specific response directed towards the HLA-B*3501-restricted epitope NPVPVGNIY (NY9: Gag245-253). The data presented in this thesis show that in spite of the expression of multiple inhibitory receptors on the surface of NY9-specific CD8+ T-cells, the NY9-response, which is a clonotypically 'private' response, bears a signature characterised by an increased cytotoxic sensitivity and the production of an array of cytokines, most notably IFN-γ and MIP-1β. Moreover, the results of this thesis indicate that the NY9-specific CD8+ T-cells are able to cross-recognise and lyse target B-cells pulsed with the corresponding HIV epitope PY9 and its variants at functional avidities (EC50) that are close to those exhibited by PY9-specific T-cells. However, not all mobilised TCR clonotypes are equally sensitive or equally cross-reactive. When individual CTL clones were studied it emerged that dominant clonotypes within the NY9-specific CD8+ T-cell memory pool possessed a higher avidity for tetramer and sensitivity for antigen than subdominant ones and demonstrated a better cross-reactive potential towards variants of the HIV-2 epitope. Hence, future HIV vaccine strategies may benefit from the inclusion of epitopes like NY9, the presentation of which appears to mobilise CD8+ T-cells with superior functional profiles.
- Published
- 2016
31. An mpox virus mRNA-lipid nanoparticle vaccine confers protection against lethal orthopoxviral challenge.
- Author
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Freyn AW, Atyeo C, Earl PL, Americo JL, Chuang GY, Natarajan H, Frey TR, Gall JG, Moliva JI, Hunegnaw R, Asthagiri Arunkumar G, Ogega CO, Nasir A, Santos G, Levin RH, Meni A, Jorquera PA, Bennett H, Johnson JA, Durney MA, Stewart-Jones G, Hooper JW, Colpitts TM, Alter G, Sullivan NJ, Carfi A, and Moss B
- Subjects
- Humans, Monkeypox virus genetics, Vaccinia virus genetics, Antigens, Viral, RNA, Messenger genetics, Mpox (monkeypox), Smallpox Vaccine genetics, Viral Vaccines
- Abstract
Mpox virus (MPXV) caused a global outbreak in 2022. Although smallpox vaccines were rapidly deployed to curb spread and disease among those at highest risk, breakthrough disease was noted after complete immunization. Given the threat of additional zoonotic events and the virus's evolving ability to drive human-to-human transmission, there is an urgent need for an MPXV-specific vaccine that confers protection against evolving MPXV strains and related orthopoxviruses. Here, we demonstrate that an mRNA-lipid nanoparticle vaccine encoding a set of four highly conserved MPXV surface proteins involved in virus attachment, entry, and transmission can induce MPXV-specific immunity and heterologous protection against a lethal vaccinia virus (VACV) challenge. Compared with modified vaccinia virus Ankara (MVA), which forms the basis for the current MPXV vaccine, immunization with an mRNA-based MPXV vaccine generated superior neutralizing activity against MPXV and VACV and more efficiently inhibited spread between cells. We also observed greater Fc effector T
H 1-biased humoral immunity to the four MPXV antigens encoded by the vaccine, as well as to the four VACV homologs. Single MPXV antigen-encoding mRNA vaccines provided partial protection against VACV challenge, whereas multivalent vaccines combining mRNAs encoding two, three, or four MPXV antigens protected against disease-related weight loss and death equal or superior to MVA vaccination. These data demonstrate that an mRNA-based MPXV vaccine confers robust protection against VACV.- Published
- 2023
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32. Increased neutralization potency and breadth elicited by a SARS-CoV-2 mRNA vaccine forming virus-like particles.
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Zhang P, Falcone S, Tsybovsky Y, Singh M, Gopan V, Miao H, Seo Y, Rogers D, Renzi I, Lai YT, Narayanan E, Stewart-Jones G, Himansu S, Carfi A, Fauci AS, and Lusso P
- Subjects
- Humans, Animals, Mice, COVID-19 Vaccines genetics, Antibodies, Viral, SARS-CoV-2 genetics, Antibodies, Neutralizing, Spike Glycoprotein, Coronavirus genetics, COVID-19 prevention & control, Simian Immunodeficiency Virus genetics
- Abstract
Vaccines have played a fundamental role in the control of infectious diseases. We previously developed a messenger RNA (mRNA) vaccine against HIV-1 that forms virus-like particles (VLPs) through coexpression of the viral envelope with Gag. Here, we applied the same principle to the design of a VLP-forming mRNA vaccine against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To promote cognate interaction with simian immunodeficiency virus (SIV) Gag, we engineered different chimeric proteins encompassing the ectodomain and the transmembrane region of the SARS-CoV-2 Spike protein from the Wuhan-Hu-1 strain fused to the gp41 cytoplasmic tail of either HIV-1 (strain WITO) or SIV (strain mac239) with or without a partial truncation at amino acid 745 to enhance membrane expression. Upon cotransfection with SIV gag mRNA, the Spike-SIV
CT.745 (SSt) chimera yielded the highest level of cell-surface expression and extracellular VLP release. Immunization of BALB/c mice with SSt+gag mRNA at 0, 4, and 16 wk induced higher titers of Spike-binding and autologous neutralizing antibodies at all time points compared to SSt mRNA alone. Furthermore, mice immunized with SSt+gag mRNA developed neutralizing antibodies effective against different variants of concern. These data demonstrate that the Gag/VLP mRNA platform can be successfully applied to vaccines against different agents for the prevention of infectious diseases of global relevance.- Published
- 2023
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33. Bivalent SARS-CoV-2 mRNA vaccines increase breadth of neutralization and protect against the BA.5 Omicron variant in mice.
- Author
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Scheaffer SM, Lee D, Whitener B, Ying B, Wu K, Liang CY, Jani H, Martin P, Amato NJ, Avena LE, Berrueta DM, Schmidt SD, O'Dell S, Nasir A, Chuang GY, Stewart-Jones G, Koup RA, Doria-Rose NA, Carfi A, Elbashir SM, Thackray LB, Edwards DK, and Diamond MS
- Subjects
- Animals, Mice, Humans, 2019-nCoV Vaccine mRNA-1273, SARS-CoV-2 genetics, mRNA Vaccines, Antibodies, Neutralizing, RNA, Messenger genetics, Vaccines, Combined, Antibodies, Viral, COVID-19 Vaccines, COVID-19 prevention & control
- Abstract
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants in the Omicron lineage has resulted in diminished Coronavirus Disease 2019 (COVID-19) vaccine efficacy and persistent transmission. In this study, we evaluated the immunogenicity and protective efficacy of two, recently authorized, bivalent COVID-19 vaccines that contain two mRNAs encoding Wuhan-1 and either BA.1 (mRNA-1273.214) or BA.4/5 (mRNA-1273.222) spike proteins. As a primary two-dose immunization series in mice, both bivalent vaccines induced greater neutralizing antibody responses against Omicron variants than the parental, monovalent mRNA-1273 vaccine. When administered to mice as a booster at 7 months after the primary vaccination series with mRNA-1273, the bivalent vaccines induced broadly neutralizing antibody responses. Whereas most anti-Omicron receptor binding domain antibodies in serum induced by mRNA-1273, mRNA-1273.214 and mRNA-1273.222 boosters cross-reacted with the antecedent Wuhan-1 spike antigen, the mRNA-1273.214 and mRNA-1273.222 bivalent vaccine boosters also induced unique BA.1-specific and BA.4/5-specific responses, respectively. Although boosting with parental or bivalent mRNA vaccines substantially improved protection against BA.5 compared to mice receiving two vaccine doses, the levels of infection, inflammation and pathology in the lung were lowest in animals administered the bivalent mRNA vaccines. Thus, boosting with bivalent Omicron-based mRNA-1273.214 or mRNA-1273.222 vaccines enhances immunogenicity and confers protection in mice against a currently circulating SARS-CoV-2 strain., (© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2023
- Full Text
- View/download PDF
34. Bivalent SARS-CoV-2 mRNA vaccines increase breadth of neutralization and protect against the BA.5 Omicron variant.
- Author
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Scheaffer SM, Lee D, Whitener B, Ying B, Wu K, Jani H, Martin P, Amato NJ, Avena LE, Berrueta DM, Schmidt SD, O'Dell S, Nasir A, Chuang GY, Stewart-Jones G, Koup RA, Doria-Rose NA, Carfi A, Elbashir SM, Thackray LB, Edwards DK, and Diamond MS
- Abstract
The emergence of SARS-CoV-2 variants in the Omicron lineage with large numbers of substitutions in the spike protein that can evade antibody neutralization has resulted in diminished vaccine efficacy and persistent transmission. One strategy to broaden vaccine-induced immunity is to administer bivalent vaccines that encode for spike proteins from both historical and newly-emerged variant strains. Here, we evaluated the immunogenicity and protective efficacy of two bivalent vaccines that recently were authorized for use in Europe and the United States and contain two mRNAs encoding Wuhan-1 and either BA.1 (mRNA-1273.214) or BA.4/5 (mRNA-1273.222) spike proteins. As a primary immunization series in BALB/c mice, both bivalent vaccines induced broader neutralizing antibody responses than the constituent monovalent vaccines (mRNA-1273 [Wuhan-1], mRNA-1273.529 [BA.1], and mRNA-1273-045 [BA.4/5]). When administered to K18-hACE2 transgenic mice as a booster at 7 months after the primary vaccination series with mRNA-1273, the bivalent vaccines induced greater breadth and magnitude of neutralizing antibodies compared to an mRNA-1273 booster. Moreover, the response in bivalent vaccine-boosted mice was associated with increased protection against BA.5 infection and inflammation in the lung. Thus, boosting with bivalent Omicron-based mRNA-1273.214 or mRNA-1273.222 vaccines enhances immunogenicity and protection against currently circulating SARS-CoV-2 strains.
- Published
- 2022
- Full Text
- View/download PDF
35. Boosting with variant-matched or historical mRNA vaccines protects against Omicron infection in mice.
- Author
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Ying B, Scheaffer SM, Whitener B, Liang CY, Dmytrenko O, Mackin S, Wu K, Lee D, Avena LE, Chong Z, Case JB, Ma L, Kim TTM, Sein CE, Woods A, Berrueta DM, Chang GY, Stewart-Jones G, Renzi I, Lai YT, Malinowski A, Carfi A, Elbashir SM, Edwards DK, Thackray LB, and Diamond MS
- Subjects
- 2019-nCoV Vaccine mRNA-1273, Animals, Antibodies, Neutralizing, Antibodies, Viral, COVID-19 Vaccines, Humans, Mice, Vaccination, Vaccines, Synthetic, mRNA Vaccines, COVID-19 prevention & control, SARS-CoV-2 genetics
- Abstract
The large number of spike substitutions in Omicron lineage variants (BA.1, BA.1.1., and BA.2) could jeopardize the efficacy of SARS-CoV-2 vaccines. We evaluated in mice the protective efficacy of the Moderna mRNA-1273 vaccine against BA.1 before or after boosting. Whereas two doses of mRNA-1273 vaccine induced high levels of neutralizing antibodies against historical WA1/2020 strains, lower levels against BA.1 were associated with breakthrough infection and inflammation in the lungs. A primary vaccination series with mRNA-1273.529, an Omicron-matched vaccine, potently neutralized BA.1 but inhibited historical or other SARS-CoV-2 variants less effectively. However, boosting with either mRNA-1273 or mRNA-1273.529 vaccines increased neutralizing titers and protection against BA.1 and BA.2 infection. Nonetheless, the neutralizing antibody titers were higher, and lung viral burden and cytokines were slightly lower in mice boosted with mRNA-1273.529 and challenged with BA.1. Thus, boosting with mRNA-1273 or mRNA-1273.529 enhances protection against Omicron infection with limited differences in efficacy measured., Competing Interests: Declaration of interests M.S.D. is a consultant for Inbios, Vir Biotechnology, Senda Biosciences, and Carnival Corporation, and on the scientific advisory boards of Moderna and Immunome. The Diamond laboratory has received unrelated funding support in sponsored research agreements from J. Virol. Biotechnol., Kaleido, and Emergent BioSolutions and past support from Moderna not related to these studies. K.W., D.L., L.E.A., L.M., T.K., C.S., A.W., A.C., S.M.E., G.-Y.C., G.S.-J., I.R., A.M., Y.-T.L., and D.K.E. are employees of and shareholders in Moderna., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2022
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36. mRNA-1273 or mRNA-Omicron boost in vaccinated macaques elicits similar B cell expansion, neutralizing responses, and protection from Omicron.
- Author
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Gagne M, Moliva JI, Foulds KE, Andrew SF, Flynn BJ, Werner AP, Wagner DA, Teng IT, Lin BC, Moore C, Jean-Baptiste N, Carroll R, Foster SL, Patel M, Ellis M, Edara VV, Maldonado NV, Minai M, McCormick L, Honeycutt CC, Nagata BM, Bock KW, Dulan CNM, Cordon J, Flebbe DR, Todd JM, McCarthy E, Pessaint L, Van Ry A, Narvaez B, Valentin D, Cook A, Dodson A, Steingrebe K, Nurmukhambetova ST, Godbole S, Henry AR, Laboune F, Roberts-Torres J, Lorang CG, Amin S, Trost J, Naisan M, Basappa M, Willis J, Wang L, Shi W, Doria-Rose NA, Zhang Y, Yang ES, Leung K, O'Dell S, Schmidt SD, Olia AS, Liu C, Harris DR, Chuang GY, Stewart-Jones G, Renzi I, Lai YT, Malinowski A, Wu K, Mascola JR, Carfi A, Kwong PD, Edwards DK, Lewis MG, Andersen H, Corbett KS, Nason MC, McDermott AB, Suthar MS, Moore IN, Roederer M, Sullivan NJ, Douek DC, and Seder RA
- Subjects
- 2019-nCoV Vaccine mRNA-1273, Animals, Antibodies, Neutralizing, Antibodies, Viral, Macaca, RNA, Messenger, COVID-19 prevention & control, SARS-CoV-2
- Abstract
SARS-CoV-2 Omicron is highly transmissible and has substantial resistance to neutralization following immunization with ancestral spike-matched vaccines. It is unclear whether boosting with Omicron-matched vaccines would enhance protection. Here, nonhuman primates that received mRNA-1273 at weeks 0 and 4 were boosted at week 41 with mRNA-1273 or mRNA-Omicron. Neutralizing titers against D614G were 4,760 and 270 reciprocal ID
50 at week 6 (peak) and week 41 (preboost), respectively, and 320 and 110 for Omicron. 2 weeks after the boost, titers against D614G and Omicron increased to 5,360 and 2,980 for mRNA-1273 boost and 2,670 and 1,930 for mRNA-Omicron, respectively. Similar increases against BA.2 were observed. Following either boost, 70%-80% of spike-specific B cells were cross-reactive against WA1 and Omicron. Equivalent control of virus replication in lower airways was observed following Omicron challenge 1 month after either boost. These data show that mRNA-1273 and mRNA-Omicron elicit comparable immunity and protection shortly after the boost., Competing Interests: Declaration of interests K.S.C. is an inventor on U.S. Patent no. 10,960,070 B2 and International Patent Application no. WO/2018/081318 entitled “Prefusion Coronavirus Spike Proteins and Their Use.” K.S.C. is an inventor on U.S. Patent Application no. 62/972,886 entitled “2019-nCoV Vaccine.” A.R.H., L.W., W.S., Y.Z., E.S.Y., J.R.M., P.D.K., M.R., N.J.S., and D.C.D. are inventors on U.S. Patent Application no. 63/147,419 entitled “Antibodies Targeting the Spike Protein of Coronaviruses.” L.P., A.V.R., B.N., D.V., A. Cook, A.D., K.S., H.A., and M.G.L. are employees of Bioqual. K.S.C., L.W., W.S., and Y.Z. are inventors on multiple U.S. Patent Applications entitled “Anti-Coronavirus Antibodies and Methods of Use.” G.-Y.C., G.S.-J., I.R., Y.-T.L., A.M., K.W., A. Carfi, and D.K.E. are employees of Moderna. M.S.S. serves on the scientific board of advisors for Moderna and Ocugen. The other authors declare no competing interests., (Published by Elsevier Inc.)- Published
- 2022
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37. Omicron variant Spike-specific antibody binding and Fc activity are preserved in recipients of mRNA or inactivated COVID-19 vaccines.
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Bartsch YC, Tong X, Kang J, Avendaño MJ, Serrano EF, García-Salum T, Pardo-Roa C, Riquelme A, Cai Y, Renzi I, Stewart-Jones G, Chen B, Medina RA, and Alter G
- Subjects
- Antibodies, Neutralizing, Antibodies, Viral, BNT162 Vaccine, Humans, Immunoglobulin G, RNA, Messenger genetics, SARS-CoV-2, Spike Glycoprotein, Coronavirus, mRNA Vaccines, COVID-19 prevention & control, COVID-19 Vaccines
- Abstract
The Omicron variant of SARS-CoV-2 has been shown to evade neutralizing antibodies elicited by vaccination or infection. Despite the global spread of the Omicron variant, even among highly vaccinated populations, death rates have not increased concomitantly. These data suggest that immune mechanisms beyond antibody-mediated virus neutralization may protect against severe disease. In addition to neutralizing pathogens, antibodies contribute to control and clearance of infections through Fc effector mechanisms. Here, we probed the ability of vaccine-induced antibodies to drive Fc effector activity against the Omicron variant using samples from individuals receiving one of three SARS-CoV-2 vaccines. Despite a substantial loss of IgM, IgA, and IgG binding to the Omicron variant receptor binding domain (RBD) in samples from individuals receiving BNT162b2, mRNA-1273, and CoronaVac vaccines, stable binding was maintained against the full-length Omicron Spike protein. Compromised RBD binding IgG was accompanied by a loss of RBD-specific antibody Fcγ receptor (FcγR) binding in samples from individuals who received the CoronaVac vaccine, but RBD-specific FcγR2a and FcγR3a binding was preserved in recipients of mRNA vaccines. Conversely, Spike protein-specific antibodies exhibited persistent but reduced binding to FcγRs across all three vaccines, although higher binding was observed in samples from recipients of mRNA vaccines. This was associated with preservation of FcγR2a and FcγR3a binding antibodies and maintenance of Spike protein-specific antibody-dependent natural killer cell activation. Thus, despite the loss of Omicron neutralization, vaccine-induced Spike protein-specific antibodies continue to drive Fc effector functions, suggesting a capacity for extraneutralizing antibodies to contribute to disease control.
- Published
- 2022
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38. A multiclade env-gag VLP mRNA vaccine elicits tier-2 HIV-1-neutralizing antibodies and reduces the risk of heterologous SHIV infection in macaques.
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Zhang P, Narayanan E, Liu Q, Tsybovsky Y, Boswell K, Ding S, Hu Z, Follmann D, Lin Y, Miao H, Schmeisser H, Rogers D, Falcone S, Elbashir SM, Presnyak V, Bahl K, Prabhakaran M, Chen X, Sarfo EK, Ambrozak DR, Gautam R, Martin MA, Swerczek J, Herbert R, Weiss D, Misamore J, Ciaramella G, Himansu S, Stewart-Jones G, McDermott A, Koup RA, Mascola JR, Finzi A, Carfi A, Fauci AS, and Lusso P
- Subjects
- Animals, HIV Antibodies immunology, Immunization, Secondary, Macaca mulatta, Risk Factors, Simian Acquired Immunodeficiency Syndrome immunology, Vaccines, Synthetic administration & dosage, mRNA Vaccines administration & dosage, Antibodies, Neutralizing immunology, Genes, env, Genes, gag, HIV Antibodies biosynthesis, HIV-1 immunology, Simian Acquired Immunodeficiency Syndrome prevention & control, Vaccines, Synthetic immunology, mRNA Vaccines immunology
- Abstract
The development of a protective vaccine remains a top priority for the control of the HIV/AIDS pandemic. Here, we show that a messenger RNA (mRNA) vaccine co-expressing membrane-anchored HIV-1 envelope (Env) and simian immunodeficiency virus (SIV) Gag proteins to generate virus-like particles (VLPs) induces antibodies capable of broad neutralization and reduces the risk of infection in rhesus macaques. In mice, immunization with co-formulated env and gag mRNAs was superior to env mRNA alone in inducing neutralizing antibodies. Macaques were primed with a transmitted-founder clade-B env mRNA lacking the N276 glycan, followed by multiple booster immunizations with glycan-repaired autologous and subsequently bivalent heterologous envs (clades A and C). This regimen was highly immunogenic and elicited neutralizing antibodies against the most prevalent (tier-2) HIV-1 strains accompanied by robust anti-Env CD4
+ T cell responses. Vaccinated animals had a 79% per-exposure risk reduction upon repeated low-dose mucosal challenges with heterologous tier-2 simian-human immunodeficiency virus (SHIV AD8). Thus, the multiclade env-gag VLP mRNA platform represents a promising approach for the development of an HIV-1 vaccine., (© 2021. This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply.)- Published
- 2021
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39. Clonotypic architecture of a Gag-specific CD8+ T-cell response in chronic human HIV-2 infection.
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Moysi E, Darko S, Gea-Mallorquí E, Petrovas C, Almeida JR, Wolinsky D, Peng Y, Jaye A, Stewart-Jones G, Douek DC, Koup RA, Dong T, and Rowland-Jones S
- Subjects
- Amino Acid Motifs, CD8-Positive T-Lymphocytes metabolism, Chronic Disease, Conserved Sequence, Epitopes, T-Lymphocyte immunology, HIV Infections metabolism, Host-Pathogen Interactions immunology, Humans, Lymphocyte Activation immunology, Receptors, Antigen, T-Cell, alpha-beta chemistry, Receptors, Antigen, T-Cell, alpha-beta genetics, Receptors, Antigen, T-Cell, alpha-beta metabolism, CD8-Positive T-Lymphocytes immunology, HIV Infections immunology, HIV Infections virology, HIV-2 physiology, T-Cell Antigen Receptor Specificity, gag Gene Products, Human Immunodeficiency Virus immunology
- Abstract
The dynamics of T-cell receptor (TCR)selection in chronic HIV-1 infection, and its association with clinical outcome, is well documented for an array of MHC-peptide complexes and disease stages. However, the factors that may contribute to the selection and expansion of CD8+ T-cells in chronic HIV-2 infection, especially at the clonal level remain unclear. To address this question, we undertook a detailed molecular characterization of the clonotypic architecture of an HLA-B*3501 restricted Gag-specific CD8+ T-cell response in donors chronically infected with HIV-2 using a combination of flow cytometry, tetramer-specific CD8+ TCR clonotyping, and in vitro assays. We show that the response to the NY9 epitope is hierarchical and narrow in terms of T-cell receptor-alpha (TCRA) and -beta (TCRB) gene usage yet clonotypically diverse. Furthermore, clonotypic dominance in shared origin CTL clones was associated with a greater magnitude of cytokine production and antigen sensitivity at limiting antigen dilution as well as enhanced cross-reactivity for known HIV-2 variants. Hence, our data suggest that effector mobilization and expansion in human chronic HIV-2 infection may be linked to the qualitative features of specific CD8+ T-cell clonotypes, which could have implications for viral control and disease outcome., (© 2021 The Authors. European Journal of Immunology published by Wiley-VCH GmbH.)
- Published
- 2021
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40. Evaluation of the mRNA-1273 Vaccine against SARS-CoV-2 in Nonhuman Primates.
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Corbett KS, Flynn B, Foulds KE, Francica JR, Boyoglu-Barnum S, Werner AP, Flach B, O'Connell S, Bock KW, Minai M, Nagata BM, Andersen H, Martinez DR, Noe AT, Douek N, Donaldson MM, Nji NN, Alvarado GS, Edwards DK, Flebbe DR, Lamb E, Doria-Rose NA, Lin BC, Louder MK, O'Dell S, Schmidt SD, Phung E, Chang LA, Yap C, Todd JM, Pessaint L, Van Ry A, Browne S, Greenhouse J, Putman-Taylor T, Strasbaugh A, Campbell TA, Cook A, Dodson A, Steingrebe K, Shi W, Zhang Y, Abiona OM, Wang L, Pegu A, Yang ES, Leung K, Zhou T, Teng IT, Widge A, Gordon I, Novik L, Gillespie RA, Loomis RJ, Moliva JI, Stewart-Jones G, Himansu S, Kong WP, Nason MC, Morabito KM, Ruckwardt TJ, Ledgerwood JE, Gaudinski MR, Kwong PD, Mascola JR, Carfi A, Lewis MG, Baric RS, McDermott A, Moore IN, Sullivan NJ, Roederer M, Seder RA, and Graham BS
- Subjects
- 2019-nCoV Vaccine mRNA-1273, Animals, Antibodies, Neutralizing blood, Antibodies, Viral blood, Betacoronavirus physiology, CD4 Antigens, COVID-19, COVID-19 Vaccines, Coronavirus Infections pathology, Coronavirus Infections therapy, Disease Models, Animal, Dose-Response Relationship, Immunologic, Immunization, Passive, Lung pathology, Lung virology, Macaca mulatta, Pneumonia, Viral pathology, Pneumonia, Viral therapy, SARS-CoV-2, Spike Glycoprotein, Coronavirus, T-Lymphocytes immunology, Viral Load, Viral Vaccines administration & dosage, Virus Replication, COVID-19 Serotherapy, Betacoronavirus immunology, Coronavirus Infections immunology, Coronavirus Infections prevention & control, Pandemics prevention & control, Pneumonia, Viral immunology, Pneumonia, Viral prevention & control, Viral Vaccines immunology
- Abstract
Background: Vaccines to prevent coronavirus disease 2019 (Covid-19) are urgently needed. The effect of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccines on viral replication in both upper and lower airways is important to evaluate in nonhuman primates., Methods: Nonhuman primates received 10 or 100 μg of mRNA-1273, a vaccine encoding the prefusion-stabilized spike protein of SARS-CoV-2, or no vaccine. Antibody and T-cell responses were assessed before upper- and lower-airway challenge with SARS-CoV-2. Active viral replication and viral genomes in bronchoalveolar-lavage (BAL) fluid and nasal swab specimens were assessed by polymerase chain reaction, and histopathological analysis and viral quantification were performed on lung-tissue specimens., Results: The mRNA-1273 vaccine candidate induced antibody levels exceeding those in human convalescent-phase serum, with live-virus reciprocal 50% inhibitory dilution (ID
50 ) geometric mean titers of 501 in the 10-μg dose group and 3481 in the 100-μg dose group. Vaccination induced type 1 helper T-cell (Th1)-biased CD4 T-cell responses and low or undetectable Th2 or CD8 T-cell responses. Viral replication was not detectable in BAL fluid by day 2 after challenge in seven of eight animals in both vaccinated groups. No viral replication was detectable in the nose of any of the eight animals in the 100-μg dose group by day 2 after challenge, and limited inflammation or detectable viral genome or antigen was noted in lungs of animals in either vaccine group., Conclusions: Vaccination of nonhuman primates with mRNA-1273 induced robust SARS-CoV-2 neutralizing activity, rapid protection in the upper and lower airways, and no pathologic changes in the lung. (Funded by the National Institutes of Health and others.)., (Copyright © 2020 Massachusetts Medical Society.)- Published
- 2020
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41. SARS-CoV-2 mRNA vaccine design enabled by prototype pathogen preparedness.
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Corbett KS, Edwards DK, Leist SR, Abiona OM, Boyoglu-Barnum S, Gillespie RA, Himansu S, Schäfer A, Ziwawo CT, DiPiazza AT, Dinnon KH, Elbashir SM, Shaw CA, Woods A, Fritch EJ, Martinez DR, Bock KW, Minai M, Nagata BM, Hutchinson GB, Wu K, Henry C, Bahl K, Garcia-Dominguez D, Ma L, Renzi I, Kong WP, Schmidt SD, Wang L, Zhang Y, Phung E, Chang LA, Loomis RJ, Altaras NE, Narayanan E, Metkar M, Presnyak V, Liu C, Louder MK, Shi W, Leung K, Yang ES, West A, Gully KL, Stevens LJ, Wang N, Wrapp D, Doria-Rose NA, Stewart-Jones G, Bennett H, Alvarado GS, Nason MC, Ruckwardt TJ, McLellan JS, Denison MR, Chappell JD, Moore IN, Morabito KM, Mascola JR, Baric RS, Carfi A, and Graham BS
- Subjects
- 2019-nCoV Vaccine mRNA-1273, Animals, Antibodies, Neutralizing immunology, Betacoronavirus genetics, CD8-Positive T-Lymphocytes immunology, COVID-19, COVID-19 Vaccines, Clinical Trials, Phase III as Topic, Coronavirus Infections genetics, Coronavirus Infections virology, Female, Lung immunology, Lung virology, Mice, Mutation, Nose immunology, Nose virology, Pneumonia, Viral virology, RNA, Messenger genetics, RNA, Viral genetics, SARS-CoV-2, Th1 Cells immunology, Toll-Like Receptor 4 agonists, Toll-Like Receptor 4 immunology, Viral Vaccines chemistry, Viral Vaccines genetics, Betacoronavirus immunology, Coronavirus Infections immunology, Coronavirus Infections prevention & control, Pandemics prevention & control, Pneumonia, Viral immunology, Pneumonia, Viral prevention & control, Viral Vaccines immunology
- Abstract
A vaccine for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is needed to control the coronavirus disease 2019 (COVID-19) global pandemic. Structural studies have led to the development of mutations that stabilize Betacoronavirus spike proteins in the prefusion state, improving their expression and increasing immunogenicity
1 . This principle has been applied to design mRNA-1273, an mRNA vaccine that encodes a SARS-CoV-2 spike protein that is stabilized in the prefusion conformation. Here we show that mRNA-1273 induces potent neutralizing antibody responses to both wild-type (D614) and D614G mutant2 SARS-CoV-2 as well as CD8+ T cell responses, and protects against SARS-CoV-2 infection in the lungs and noses of mice without evidence of immunopathology. mRNA-1273 is currently in a phase III trial to evaluate its efficacy.- Published
- 2020
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42. A Platform Incorporating Trimeric Antigens into Self-Assembling Nanoparticles Reveals SARS-CoV-2-Spike Nanoparticles to Elicit Substantially Higher Neutralizing Responses than Spike Alone.
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Zhang B, Chao CW, Tsybovsky Y, Abiona OM, Hutchinson GB, Moliva JI, Olia AS, Pegu A, Phung E, Stewart-Jones G, Verardi R, Wang L, Wang S, Werner A, Yang ES, Yap C, Zhou T, Mascola JR, Sullivan NJ, Graham BS, Corbett KS, and Kwong PD
- Abstract
Antigens displayed on self-assembling nanoparticles can stimulate strong immune responses and have been playing an increasingly prominent role in structure-based vaccines. However, the development of such immunogens is often complicated by inefficiencies in their production. To alleviate this issue, we developed a plug-and-play platform using the spontaneous isopeptide-bond formation of the SpyTag:SpyCatcher system to display trimeric antigens on self-assembling nanoparticles, including the 60-subunit Aquifex aeolicus lumazine synthase (LuS) and the 24-subunit Helicobacter pylori ferritin. LuS and ferritin coupled to SpyTag expressed well in a mammalian expression system when an N- linked glycan was added to the nanoparticle surface. The respiratory syncytial virus fusion (F) glycoprotein trimer - stabilized in the prefusion conformation and fused with SpyCatcher - could be efficiently conjugated to LuS-SpyTag or ferritin-SpyTag, enabling multivalent display of F trimers with prefusion antigenicity. Similarly, F-glycoprotein trimers from human parainfluenza virus-type 3 and spike-glycoprotein trimers from SARS-CoV-2 could be displayed on LuS nanoparticles with decent yield and antigenicity. Notably, murine vaccination with the SARS-CoV-2 spike-LuS nanoparticles elicited ~25-fold higher neutralizing responses, weight-per-weight relative to spike alone. The versatile platform described here thus allows for multivalent plug-and-play presentation on self-assembling nanoparticles of trimeric viral antigens, with SARS-CoV-2 spike-LuS nanoparticles inducing particularly potent neutralizing responses., Competing Interests: Competing interests K.S.C. and B.S.G. are inventors on International Patent Application No. WO/2018/081318 entitled “Prefusion Coronavirus Spike Proteins and Their Use.” K.S.C., O.M.A., G.B.H., and B.S.G. are inventors on US Patent Application No. 62/972,886 entitled “2019-nCoV Vaccine”.
- Published
- 2020
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43. Immunization with Clinical HIV-1 Env Proteins Induces Broad Antibody Dependent Cellular Cytotoxicity-Mediating Antibodies in a Rabbit Vaccination Model.
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Karlsson I, Borggren M, Jensen SS, Heyndrickx L, Stewart-Jones G, Scarlatti G, and Fomsgaard A
- Subjects
- AIDS Vaccines administration & dosage, AIDS Vaccines isolation & purification, Animals, Antibodies, Neutralizing blood, Cross Reactions, Female, HIV Infections virology, HIV-1 isolation & purification, Humans, Immunization Schedule, Leukocytes, Mononuclear immunology, Male, Rabbits, Vaccines, DNA administration & dosage, Vaccines, DNA immunology, Vaccines, DNA isolation & purification, Vaccines, Subunit administration & dosage, Vaccines, Subunit immunology, Vaccines, Subunit isolation & purification, env Gene Products, Human Immunodeficiency Virus isolation & purification, AIDS Vaccines immunology, Antibody-Dependent Cell Cytotoxicity, HIV Antibodies blood, HIV-1 immunology, env Gene Products, Human Immunodeficiency Virus immunology
- Abstract
The induction of both neutralizing antibodies and non-neutralizing antibodies with effector functions, for example, antibody-dependent cellular cytotoxicity (ADCC), is desired in the search for effective vaccines against HIV-1. In the pursuit of novel immunogens capable of inducing an efficient antibody response, rabbits were immunized with selected antigens using different prime-boost strategies. We immunized 35 different groups of rabbits with Env antigens from clinical HIV-1 subtypes A and B, including immunization with DNA alone, protein alone, and DNA prime with protein boost. The rabbit sera were screened for ADCC activity using a GranToxiLux-based assay with human peripheral blood mononuclear cells as effector cells and CEM.NKR
CCR5 cells coated with HIV-1 envelope as target cells. The groups with the highest ADCC activity were further characterized for cross-reactivity between HIV-1 subtypes. The immunogen inducing the most potent and broadest ADCC response was a trimeric gp140. The ADCC activity was highest against the HIV-1 subtype corresponding to the immunogen. The ADCC activity did not necessarily reflect neutralizing activity in the pseudovirus-TZMbl assay, but there was an overall correlation between the two antiviral activities. We present a rabbit vaccination model and an assay suitable for screening HIV-1 vaccine candidates for the induction of ADCC-mediating antibodies in addition to neutralizing antibodies. The antigens and/or immunization strategies capable of inducing antibodies with ADCC activity did not necessarily induce neutralizing activity and vice versa. Nevertheless, we identified vaccine candidates that were able to concurrently induce both types of responses and that had ADCC activity that was cross-reactive between different subtypes. When searching for an effective vaccine candidate, it is important to evaluate the antibody response using a model and an assay measuring the desired function.- Published
- 2018
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44. An MHC-restricted antibody-based chimeric antigen receptor requires TCR-like affinity to maintain antigen specificity.
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Maus MV, Plotkin J, Jakka G, Stewart-Jones G, Rivière I, Merghoub T, Wolchok J, Renner C, and Sadelain M
- Abstract
Chimeric antigen receptors (CARs) are synthetic receptors that usually redirect T cells to surface antigens independent of human leukocyte antigen (HLA). Here, we investigated a T cell receptor-like CAR based on an antibody that recognizes HLA-A*0201 presenting a peptide epitope derived from the cancer-testis antigen NY-ESO-1. We hypothesized that this CAR would efficiently redirect transduced T cells in an HLA-restricted, antigen-specific manner. However, we found that despite the specificity of the soluble Fab, the same antibody in the form of a CAR caused moderate lysis of HLA-A2 expressing targets independent of antigen owing to T cell avidity. We hypothesized that lowering the affinity of the CAR for HLA-A2 would improve its specificity. We undertook a rational approach of mutating residues that, in the crystal structure, were predicted to stabilize binding to HLA-A2. We found that one mutation (DN) lowered the affinity of the Fab to T cell receptor-range and restored the epitope specificity of the CAR. DN CAR T cells lysed native tumor targets in vitro , and, in a xenogeneic mouse model implanted with two human melanoma lines (A2+/NYESO+ and A2+/NYESO-), DN CAR T cells specifically migrated to, and delayed progression of, only the HLA-A2+/NY-ESO-1+ melanoma. Thus, although maintaining MHC-restricted antigen specificity required T cell receptor-like affinity that decreased potency, there is exciting potential for CARs to expand their repertoire to include a broad range of intracellular antigens.
- Published
- 2017
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45. Vaccine-Elicited Tier 2 HIV-1 Neutralizing Antibodies Bind to Quaternary Epitopes Involving Glycan-Deficient Patches Proximal to the CD4 Binding Site.
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Crooks ET, Tong T, Chakrabarti B, Narayan K, Georgiev IS, Menis S, Huang X, Kulp D, Osawa K, Muranaka J, Stewart-Jones G, Destefano J, O'Dell S, LaBranche C, Robinson JE, Montefiori DC, McKee K, Du SX, Doria-Rose N, Kwong PD, Mascola JR, Zhu P, Schief WR, Wyatt RT, Whalen RG, and Binley JM
- Subjects
- Animals, Binding Sites, CD4 Antigens genetics, Epitopes chemistry, Female, Guinea Pigs, HIV Envelope Protein gp120 chemistry, HIV Envelope Protein gp120 genetics, HIV Envelope Protein gp120 immunology, HIV Infections immunology, HIV Infections virology, Humans, Immunization, Polysaccharides chemistry, Polysaccharides genetics, Protein Conformation, Rabbits, AIDS Vaccines immunology, Antibodies, Monoclonal immunology, Antibodies, Neutralizing immunology, CD4 Antigens metabolism, Epitopes immunology, HIV Antibodies immunology, HIV Envelope Protein gp120 metabolism, HIV-1 immunology, Polysaccharides deficiency
- Abstract
Eliciting broad tier 2 neutralizing antibodies (nAbs) is a major goal of HIV-1 vaccine research. Here we investigated the ability of native, membrane-expressed JR-FL Env trimers to elicit nAbs. Unusually potent nAb titers developed in 2 of 8 rabbits immunized with virus-like particles (VLPs) expressing trimers (trimer VLP sera) and in 1 of 20 rabbits immunized with DNA expressing native Env trimer, followed by a protein boost (DNA trimer sera). All 3 sera neutralized via quaternary epitopes and exploited natural gaps in the glycan defenses of the second conserved region of JR-FL gp120. Specifically, trimer VLP sera took advantage of the unusual absence of a glycan at residue 197 (present in 98.7% of Envs). Intriguingly, removing the N197 glycan (with no loss of tier 2 phenotype) rendered 50% or 16.7% (n = 18) of clade B tier 2 isolates sensitive to the two trimer VLP sera, showing broad neutralization via the surface masked by the N197 glycan. Neutralizing sera targeted epitopes that overlap with the CD4 binding site, consistent with the role of the N197 glycan in a putative "glycan fence" that limits access to this region. A bioinformatics analysis suggested shared features of one of the trimer VLP sera and monoclonal antibody PG9, consistent with its trimer-dependency. The neutralizing DNA trimer serum took advantage of the absence of a glycan at residue 230, also proximal to the CD4 binding site and suggesting an epitope similar to that of monoclonal antibody 8ANC195, albeit lacking tier 2 breadth. Taken together, our data show for the first time that strain-specific holes in the glycan fence can allow the development of tier 2 neutralizing antibodies to native spikes. Moreover, cross-neutralization can occur in the absence of protecting glycan. Overall, our observations provide new insights that may inform the future development of a neutralizing antibody vaccine.
- Published
- 2015
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46. Boosting of HIV-1 neutralizing antibody responses by a distally related retroviral envelope protein.
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Uchtenhagen H, Schiffner T, Bowles E, Heyndrickx L, LaBranche C, Applequist SE, Jansson M, De Silva T, Back JW, Achour A, Scarlatti G, Fomsgaard A, Montefiori D, Stewart-Jones G, and Spetz AL
- Subjects
- Animals, Base Sequence, Female, HIV-1 genetics, Humans, Male, Molecular Sequence Data, Rabbits, Retroviridae Proteins genetics, Retroviridae Proteins pharmacology, Simian Immunodeficiency Virus genetics, Viral Envelope Proteins genetics, Viral Envelope Proteins pharmacology, env Gene Products, Human Immunodeficiency Virus genetics, env Gene Products, Human Immunodeficiency Virus pharmacology, Antibodies, Neutralizing immunology, HIV Antibodies immunology, HIV-1 immunology, Immunization, Secondary, Retroviridae Proteins immunology, Simian Immunodeficiency Virus immunology, Viral Envelope Proteins immunology, env Gene Products, Human Immunodeficiency Virus immunology
- Abstract
Our knowledge of the binding sites for neutralizing Abs (NAb) that recognize a broad range of HIV-1 strains (bNAb) has substantially increased in recent years. However, gaps remain in our understanding of how to focus B cell responses to vulnerable conserved sites within the HIV-1 envelope glycoprotein (Env). In this article, we report an immunization strategy composed of a trivalent HIV-1 (clade B envs) DNA prime, followed by a SIVmac239 gp140 Env protein boost that aimed to focus the immune response to structurally conserved parts of the HIV-1 and simian immunodeficiency virus (SIV) Envs. Heterologous NAb titers, primarily to tier 1 HIV-1 isolates, elicited during the trivalent HIV-1 env prime, were significantly increased by the SIVmac239 gp140 protein boost in rabbits. Epitope mapping of Ab-binding reactivity revealed preferential recognition of the C1, C2, V2, V3, and V5 regions. These results provide a proof of concept that a distally related retroviral SIV Env protein boost can increase pre-existing NAb responses against HIV-1., (Copyright © 2014 by The American Association of Immunologists, Inc.)
- Published
- 2014
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47. Linking genotype to phenotype on beads: high throughput selection of peptides with biological function.
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Huang LC, Pan X, Yang H, Wan LK, Stewart-Jones G, Dorrell L, and Ogg G
- Subjects
- HIV Envelope Protein gp120 chemistry, HIV Envelope Protein gp120 metabolism, HIV-1 drug effects, HIV-1 physiology, Humans, Kinetics, Microbial Sensitivity Tests, Peptide Library, Protein Binding drug effects, Receptors, CCR5 metabolism, Receptors, HIV metabolism, Reproducibility of Results, beta 2-Microglobulin chemistry, beta 2-Microglobulin metabolism, Anti-HIV Agents metabolism, Anti-HIV Agents pharmacology, High-Throughput Screening Assays, Microspheres, Peptides metabolism, Peptides pharmacology
- Abstract
Although peptides are well recognised biological molecules in vivo, their selection from libraries is challenging because of relative low affinity whilst in linear conformation. We hypothesized that multiplexed peptides and DNA on the surface of beads would provide a platform for enhanced avidity and the selection of relevant peptides from a library (ORBIT bead display). Using human immunodeficiency virus (HIV-1) gp120 as a target, we identify peptides that inhibit HIV-1 replication in vitro through blocking of protein:protein interaction with the co-receptor CCR5. The bead display approach has many potential applications for probing biological systems and for drug lead development.
- Published
- 2013
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48. Selected HIV-1 Env trimeric formulations act as potent immunogens in a rabbit vaccination model.
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Heyndrickx L, Stewart-Jones G, Jansson M, Schuitemaker H, Bowles E, Buonaguro L, Grevstad B, Vinner L, Vereecken K, Parker J, Ramaswamy M, Biswas P, Vanham G, Scarlatti G, and Fomsgaard A
- Subjects
- Animals, Antibodies, Neutralizing immunology, Chemistry, Pharmaceutical, Female, Humans, Kinetics, Male, Models, Animal, Peptide Fragments immunology, Protein Structure, Quaternary, Rabbits, HIV Envelope Protein gp120 chemistry, HIV Envelope Protein gp120 immunology, HIV-1 immunology, Protein Multimerization, Vaccination, env Gene Products, Human Immunodeficiency Virus chemistry, env Gene Products, Human Immunodeficiency Virus immunology
- Abstract
Background: Ten to 30% of HIV-1 infected subjects develop broadly neutralizing antibodies (bNAbs) during chronic infection. We hypothesized that immunizing rabbits with viral envelope glycoproteins (Envs) from these patients may induce bNAbs, when formulated as a trimeric protein and in the presence of an adjuvant., Methods: Based on in vitro neutralizing activity in serum, patients with bNAbs were selected for cloning of their HIV-1 Env. Seven stable soluble trimeric gp140 proteins were generated from sequences derived from four adults and two children infected with either clade A or B HIV-1. From one of the clade A Envs both the monomeric and trimeric Env were produced for comparison. Rabbits were immunized with soluble gp120 or trimeric gp140 proteins in combination with the adjuvant dimethyl dioctadecyl ammonium/trehalose dibehenate (CAF01). Env binding in rabbit immune serum was determined using ELISAs based on gp120-IIIB protein. Neutralizing activity of IgG purified from rabbit immune sera was measured with the pseudovirus-TZMbl assay and a PBMC-based neutralization assay for selected experiments., Results: It was initially established that gp140 trimers induce better antibody responses over gp120 monomers and that the adjuvant CAF01 was necessary for such strong responses. Gp140 trimers, based on HIV-1 variants from patients with bNAbs, were able to elicit both gp120IIIB specific IgG and NAbs to Tier 1 viruses of different subtypes. Potency of NAbs closely correlated with titers, and an gp120-binding IgG titer above a threshold of 100,000 was predictive of neutralization capability. Finally, peptide inhibition experiments showed that a large fraction of the neutralizing IgG was directed against the gp120 V3 region., Conclusions: Our results indicate that the strategy of reverse immunology based on selected Env sequences is promising when immunogens are delivered as stabilized trimers in CAF01 adjuvant and that the rabbit is a valuable model for HIV vaccine studies.
- Published
- 2013
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49. Optimization of HIV-1 Envelope DNA Vaccine Candidates within Three Different Animal Models, Guinea Pigs, Rabbits and Cynomolgus Macaques.
- Author
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Borggren M, Vinner L, Andresen BS, Grevstad B, Repits J, Melchers M, Elvang TL, Sanders RW, Martinon F, Dereuddre-Bosquet N, Bowles EJ, Stewart-Jones G, Biswas P, Scarlatti G, Jansson M, Heyndrickx L, Grand RL, and Fomsgaard A
- Abstract
HIV-1 DNA vaccines have many advantageous features. Evaluation of HIV-1 vaccine candidates often starts in small animal models before macaque and human trials. Here, we selected and optimized DNA vaccine candidates through systematic testing in rabbits for the induction of broadly neutralizing antibodies (bNAb). We compared three different animal models: guinea pigs, rabbits and cynomolgus macaques. Envelope genes from the prototype isolate HIV-1 Bx08 and two elite neutralizers were included. Codon-optimized genes, encoded secreted gp140 or membrane bound gp150, were modified for expression of stabilized soluble trimer gene products, and delivered individually or mixed. Specific IgG after repeated i.d. inoculations with electroporation confirmed in vivo expression and immunogenicity. Evaluations of rabbits and guinea pigs displayed similar results. The superior DNA construct in rabbits was a trivalent mix of non-modified codon-optimized gp140 envelope genes. Despite NAb responses with some potency and breadth in guinea pigs and rabbits, the DNA vaccinated macaques displayed less bNAb activity. It was concluded that a trivalent mix of non-modified gp140 genes from rationally selected clinical isolates was, in this study, the best option to induce high and broad NAb in the rabbit model, but this optimization does not directly translate into similar responses in cynomolgus macaques.
- Published
- 2013
- Full Text
- View/download PDF
50. Characterization of humoral responses to soluble trimeric HIV gp140 from a clade A Ugandan field isolate.
- Author
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Visciano ML, Tagliamonte M, Stewart-Jones G, Heyndrickx L, Vanham G, Jansson M, Fomsgaard A, Grevstad B, Ramaswamy M, Buonaguro FM, Tornesello ML, Biswas P, Scarlatti G, and Buonaguro L
- Subjects
- Animals, Antibodies, Neutralizing immunology, Antibodies, Viral immunology, Enzyme-Linked Immunosorbent Assay, Epitopes, B-Lymphocyte immunology, Female, HEK293 Cells, HIV Infections virology, HIV-1 classification, Humans, Immunization, Neutralization Tests, Rabbits, Recombinant Proteins immunology, Uganda, HIV Infections immunology, Immunity, Humoral, env Gene Products, Human Immunodeficiency Virus immunology
- Abstract
Trimeric soluble forms of HIV gp140 envelope glycoproteins represent one of the closest molecular structures compared to native spikes present on intact virus particles. Trimeric soluble gp140 have been generated by several groups and such molecules have been shown to induce antibodies with neutralizing activity against homologous and heterologous viruses. In the present study, we generated a recombinant trimeric soluble gp140, derived from a previously identified Ugandan A-clade HIV field isolate (gp14094UG018). Antibodies elicited in immunized rabbits show a broad binding pattern to HIV envelopes of different clades. An epitope mapping analysis reveals that, on average, the binding is mostly focused on the C1, C2, V3, V5 and C5 regions. Immune sera show neutralization activity to Tier 1 isolates of different clades, demonstrating cross clade neutralizing activity which needs to be further broadened by possible structural modifications of the clade A gp14094UG018. Our results provide a rationale for the design and evaluation of immunogens and the clade A gp14094UG018 shows promising characteristics for potential involvement in an effective HIV vaccine with broad activity.
- Published
- 2013
- Full Text
- View/download PDF
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