75 results on '"Stevens SJ"'
Search Results
2. HIV/AIDS risks among Native American drug users: key findings from focus group interviews and implications for intervention strategies.
- Author
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Baldwin JA, Trotter RT II, Martinez D, Stevens SJ, John D, and Brems C
- Abstract
A multisite study funded through the National Institute on Drug Abuse and the Office of Research on Minority Health was conducted in 1996 to determine the HIV/AIDS prevention needs of Native American out-of-treatment drug users. In an effort to recommend directions for HIV/AIDS prevention programming, one component of this study entailed conducting a series of focus groups at each of four sites: Anchorage, Alaska; Denver, Colorado; Flagstaff, Arizona; and Tucson, Arizona. While some site differences were noted, several consistent thematic findings were revealed across all locations. Specifically, focus group members strongly recommended directly involving key members of the Native American community in conducting outreach and intervention activities, involving Native people as the sources of information, and utilizing local and tribally relevant forms of delivering the message. Other consistent themes included getting messages to smaller communities to prevent the potential 'annihilation' of tribes, educating youth, and linking alcohol prevention education to HIV/AIDS education. Findings from this study support the idea that future HIV/AIDS prevention programs must take into account subgroup and individual level differences among Native American drug users. [ABSTRACT FROM AUTHOR]
- Published
- 1999
3. HIV sex and drug risk behavior and behavior change in a national sample of injection drug and crack cocaine using women... co-published simultaneously in Women, Drug Use, and HIV Infection (ed: Sally J. Stevens, Stephanie Tortu, and Susan L Coyle) The Haworth Medical Press, an imprint of The Haworth Press, Inc, 1998, pp. 25-48.
- Author
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Stevens SJ, Estrada AL, and Estrada BD
- Abstract
This paper describes HIV sex and drug risk behavior and behavior change of injection drug and crack cocaine using women enrolled in a national multi-site Cooperative Agreement program. Baseline data on the 1,403 women who were randomly assigned to a two session intervention that was standardized across sites indicate that sex and drug risk behavior for becoming infected with HIV was considerable. Six-month post intervention follow-up data for the same sample of women show that significant reductions in sex and drug risk behavior were observed for the entire sample of women for the risk variables under study. Significant reductions were also demonstrated for various sub-groups of women enrolled in the study on most of the sex and drug risk variables. Given these findings, it appears that the standard intervention was effective in assisting drug using women reduce their behaviors that put them at risk of becoming infected with HIV. Further research is needed on the development and evaluation of HIV interventions that target specific risk behaviors and various HIV risk behavior profiles of women. [ABSTRACT FROM AUTHOR]
- Published
- 1998
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4. Violence and HIV sexual risk behaviors among female sex partners of male drug users... co-published simultaneously in Women, Drug Use, and HIV Infection (ed: Sally J. Stevens, Stephanie Tortu, and Susan L. Coyle) The Haworth Medical Press, an imprint of The Haworth Press, Inc., 1998. pp 161-75.
- Author
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He H, McCoy HV, Stevens SJ, and Stark MJ
- Abstract
Objective: Violence and HIV are emerging as interconnected public health hazards among drug users and their families. The purposes of this study. are to (1) determine the prevalence of sexual and physical abuse of non-drug-using female sex partners of mate drug users, and (2) ascertain the association. between such violence and HIV-related risk behaviors. Methods: From 11/93 to 11/95, 208 female sex partners of injection drug or crack users in Collier County, FL, Tucson, AZ, and Portland, OF, were interviewed as part of a NIDA-funded HIV risk reduction project. Their mean age was 30 years (range 18-54); 21 % were White, 6% African American, 7% Native American, and 63% Hispanic. Results: Of the 208 women, 28% reported being sexually molested and 20% raped before age 13; 41% reported being raped at least once in their lifetime. Forty-two percent of the women were physically assaulted by their sex partners; 36% had been threatened with assault by their sex partners. Those who were raped or threatened with assault were more likely to have multiple sex partners and engage in unprotected anal sex; there was a trend for women who had been physically assaulted to be more likely to engage in unprotected anal sex. Discussion: Rape, assault and the threat of assault are commonplace in the histories of female sex partners of male drug users. Experiences of violence and threats of violence are associated with heightened risk for the sexual transmission of HIV. Providers of HIV prevention need to understand the sequelae of violence, and design interventions which empower women to protect themselves from sexual transmission of HIV. [ABSTRACT FROM AUTHOR]
- Published
- 1998
5. Social Vulnerability and Frailty in Hospitalized Older Adults.
- Author
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Mah JC, Godin J, Stevens SJ, Keefe JM, Rockwood K, and Andrew MK
- Abstract
Background: Social vulnerability is the accumulation of disadvantageous social circumstances resulting in susceptibility to adverse health outcomes. Associated with increased mortality, cognitive decline, and disability, social vulnerability has primarily been studied in large population databases rather than frail hospitalized individuals. We examined how social vulnerability contributes to hospital outcomes and use of hospital resources for older adults presenting to the Emergency Department., Methods: We analyzed patients 65 years of age or older admitted through the Emergency Department and consulted to internal medicine or geriatrics at a Canadian tertiary care hospital from July 2009 to September 2020. A 20-item social vulnerability index (SVI) and a 57-item frailty index (FI) were calculated, using a deficit accumulation approach. Outcomes were length of stay (LOS), extended hospital LOS designation, alternative level of care (ALC) designation, in-hospital mortality, and discharge to long-term care (LTC)., Results: In 1,146 patients (mean age 80.5±8.3, 54.0% female), mean SVI was 0.40±0.16 and FI was 0.44±0.14. The SVI scores were not associated with admission to hospital. Amongst those admitted, for every 0.1 unit increase in SVI, LOS increased by 1.15 days ( p <.001) after adjusting for age, sex and FI. SVI was associated with staying over the expected LOS (aOR: 1.19, 1.05 - 1.34, p =.009) and ALC status (aOR 1.39, 1.12 - 1.74, p <.004). SVI was not associated with in-hospital mortality, but was associated with incident discharge to LTC (aOR 1.03, 1.02 - 1.04, p <.001)., Conclusion: Independent of frailty, being socially vulnerable was associated with increased LOS, designation as ALC, and being discharged to LTC from hospital. Consideration of social vulnerability's influence on prolonged hospitalization and long-term care needs has implications for screening and hospital resources., Competing Interests: CONFLICT OF INTEREST DISCLOSURES JCM’s graduate studies are supported by scholarships from the Pierre Elliot Trudeau Foundation, Dalhousie Medical Research Foundation’s Dr. Patrick Madore Scholarship, Dalhousie University’s Department of Medicine’s Killam Postgraduate Medical Scholarship & University Internal Medicine Research Foundation Fellowship. KR is President and Chief Science Officer of DGI Clinical, which in the last five years has contracts with pharma and device manufacturers on individualized outcome measurement. In 2019 he attended an advisory board meeting with Nutricia. Otherwise any personal fees are for invited guest lectures and academic symposia, received directly from event organizers, chiefly for presentations on frailty. He is Associate Director of the Canadian Consortium on Neurodegeneration in Aging, which is funded by the Canadian Institutes of Health Research, and with additional funding from the Alzheimer Society of Canada and several other charities. He receives career support from the Dalhousie Medical Research Foundation as the Kathryn Allen Weldon Professor of Alzheimer Research, and research support from the Canadian Institutes of Health Research, the QEII Health Science Centre Foundation, the Capital Health Research Fund and the Fountain Family Innovation Fund of the QEII Health Science Centre Foundation. KR has asserted copyright of the Clinical Frailty Scale through Dalhousie University. Use is free for research, education or not-for-profit care (users are asked not to change it or charge for its use). MKA reports grants from Canadian Consortium on Neurodegeneration in Aging (CCNA), with funding from Canadian Institutes of Health Research (CIHR). MKA reports grant funding and honoraria from Sanofi, GSK, Pfizer, Seqirus and the Canadian Frailty Network for work relating to frailty and vaccine preventable illness. All other authors declare that they have no competing interests., (© 2023 Author(s).)
- Published
- 2023
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6. Changes in synaptic inputs to dI3 INs and MNs after complete transection in adult mice.
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Goltash S, Stevens SJ, Topcu E, and Bui TV
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- Humans, Mice, Animals, Motor Neurons physiology, Movement, Synapses physiology, Interneurons physiology, Spinal Cord, Spinal Cord Injuries
- Abstract
Introduction: Spinal cord injury (SCI) is a debilitating condition that disrupts the communication between the brain and the spinal cord. Several studies have sought to determine how to revive dormant spinal circuits caudal to the lesion to restore movements in paralyzed patients. So far, recovery levels in human patients have been modest at best. In contrast, animal models of SCI exhibit more recovery of lost function. Previous work from our lab has identified dI3 interneurons as a spinal neuron population central to the recovery of locomotor function in spinalized mice. We seek to determine the changes in the circuitry of dI3 interneurons and motoneurons following SCI in adult mice., Methods: After a complete transection of the spinal cord at T9-T11 level in transgenic Isl1:YFP mice and subsequent treadmill training at various time points of recovery following surgery, we examined changes in three key circuits involving dI3 interneurons and motoneurons: (1) Sensory inputs from proprioceptive and cutaneous afferents, (2) Presynaptic inhibition of sensory inputs, and (3) Central excitatory glutamatergic synapses from spinal neurons onto dI3 INs and motoneurons. Furthermore, we examined the possible role of treadmill training on changes in synaptic connectivity to dI3 interneurons and motoneurons., Results: Our data suggests that VGLUT1
+ inputs to dI3 interneurons decrease transiently or only at later stages after injury, whereas levels of VGLUT1+ remain the same for motoneurons after injury. Levels of VGLUT2+ inputs to dI3 INs and MNs may show transient increases but fall below levels seen in sham-operated mice after a period of time. Levels of presynaptic inhibition to VGLUT1+ inputs to dI3 INs and MNs can rise shortly after SCI, but those increases do not persist. However, levels of presynaptic inhibition to VGLUT1+ inputs never fell below levels observed in sham-operated mice. For some synaptic inputs studied, levels were higher in spinal cord-injured animals that received treadmill training, but these increases were observed only at some time points., Discussion: These results suggest remodeling of spinal circuits involving spinal interneurons that have previously been implicated in the recovery of locomotor function after spinal cord injury in mice., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Goltash, Stevens, Topcu and Bui.)- Published
- 2023
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7. The performance of genome sequencing as a first-tier test for neurodevelopmental disorders.
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van der Sanden BPGH, Schobers G, Corominas Galbany J, Koolen DA, Sinnema M, van Reeuwijk J, Stumpel CTRM, Kleefstra T, de Vries BBA, Ruiterkamp-Versteeg M, Leijsten N, Kwint M, Derks R, Swinkels H, den Ouden A, Pfundt R, Rinne T, de Leeuw N, Stegmann AP, Stevens SJ, van den Wijngaard A, Brunner HG, Yntema HG, Gilissen C, Nelen MR, and Vissers LELM
- Subjects
- Humans, Genetic Testing methods, Base Sequence, Chromosome Mapping, Exome Sequencing, Neurodevelopmental Disorders diagnosis, Neurodevelopmental Disorders genetics
- Abstract
Genome sequencing (GS) can identify novel diagnoses for patients who remain undiagnosed after routine diagnostic procedures. We tested whether GS is a better first-tier genetic diagnostic test than current standard of care (SOC) by assessing the technical and clinical validity of GS for patients with neurodevelopmental disorders (NDD). We performed both GS and exome sequencing in 150 consecutive NDD patient-parent trios. The primary outcome was diagnostic yield, calculated from disease-causing variants affecting exonic sequence of known NDD genes. GS (30%, n = 45) and SOC (28.7%, n = 43) had similar diagnostic yield. All 43 conclusive diagnoses obtained with SOC testing were also identified by GS. SOC, however, required integration of multiple test results to obtain these diagnoses. GS yielded two more conclusive diagnoses, and four more possible diagnoses than ES-based SOC (35 vs. 31). Interestingly, these six variants detected only by GS were copy number variants (CNVs). Our data demonstrate the technical and clinical validity of GS to serve as routine first-tier genetic test for patients with NDD. Although the additional diagnostic yield from GS is limited, GS comprehensively identified all variants in a single experiment, suggesting that GS constitutes a more efficient genetic diagnostic workflow., (© 2022. The Author(s).)
- Published
- 2023
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8. Social factors influencing utilization of home care in community-dwelling older adults: a scoping review.
- Author
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Mah JC, Stevens SJ, Keefe JM, Rockwood K, and Andrew MK
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- Aged, Educational Status, Housing, Humans, Social Factors, Home Care Services, Independent Living
- Abstract
Background: Older adults want to live at home as long as possible, even in the face of circumstances that limit their autonomy. Home care services reflect this emergent preference, allowing older adults to 'age in place' in familiar settings rather than receiving care for chronic health conditions or ageing needs in an institutionalized setting. Numerous social factors, generally studied in isolation, have been associated with home care utilization. Even so, social circumstances are complex and how these factors collectively influence home care use patterns remains unclear., Objectives: To provide a broad and comprehensive overview of the social factors influencing home care utilization; and to evaluate the influence of discrete social factors on patterns of home care utilization in community-dwelling older adults in high-income countries., Methods: A scoping review was conducted of six electronic databases for records published between 2010 and 2020; additional records were obtained from hand searching review articles, reference lists of included studies and documents from international organisations. A narrative synthesis was presented, complemented by vote counting per social factor, harvest plots and an evaluation of aggregated findings to determine consistency across studies., Results: A total of 2,365 records were identified, of which 66 met inclusion criteria. There were 35 discrete social factors grouped into four levels of influence using a socio-ecological model (individual, relationship, community and societal levels) and grouped according to outcome of interest (home care propensity and intensity). Across all studies, social factors consistently showing any association (positive, negative, or equivocal in pattern) with home care propensity were: age, ethnicity/race, self-assessed health, insurance, housing ownership, housing problems, marital status, household income, children, informal caregiving, social networks and urban/rural area. Age, education, personal finances, living arrangements and housing ownership were associated with home care intensity, also with variable patterns in utilization. Additional community and societal level factors were identified as relevant but lacking consistency across the literature; these included rurality, availability of community services, methods of financing home care systems, and cultural determinants., Conclusion: This is the first literature review bringing together a wide range of reported social factors that influence home care utilization. It confirms social factors do influence home care utilization in complex interactions, distinguishes level of influences at which these factors affect patterns of use and discusses policy implications for home care reform.
- Published
- 2021
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9. Painful Seizures: a Review of Epileptic Ictal Pain.
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Hwang ST, Goodman T, and Stevens SJ
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- Humans, Pain etiology, Pain physiopathology, Seizures complications, Seizures physiopathology
- Abstract
Purpose of Review: To summarize the literature regarding the prevalence, pathophysiology, and anatomic networks involved with painful seizures, which are a rare but striking clinical presentation of epilepsy., Recent Findings: Several recent large case series have explored the prevalence of the main cephalgic, somatosensory, and abdominal variants of this rare disorder. Research studies including the use of electrical stimulation and functional neuroimaging have demonstrated the networks underlying painful somatosensory or visceral seizures. Improved understanding of some of the overlapping mechanisms between migraines and seizures has elucidated their common pathophysiology. The current literature reflects a widening range of awareness and understanding of painful seizures, despite their rarity.
- Published
- 2019
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10. Intractable Generalized Epilepsy: Therapeutic Approaches.
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Hwang ST, Stevens SJ, Fu AX, and Proteasa SV
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- Anticonvulsants therapeutic use, Combined Modality Therapy, Deep Brain Stimulation, Diet, Ketogenic, Drug Resistant Epilepsy diet therapy, Drug Resistant Epilepsy drug therapy, Drug Resistant Epilepsy surgery, Humans, Neurosurgical Procedures, Drug Resistant Epilepsy therapy, Epilepsy, Generalized therapy
- Abstract
Purpose of Review: To summarize recent developments in therapeutic options, both medical and surgical, for patients with drug-resistant generalized epilepsy syndromes, which continue to be a multifaceted challenge for patients and physicians., Recent Findings: Newer generation pharmaceutical options are now available, such as brivaracetam, rufinamide, lacosamide, perampanel, and cannabidiol. Less restrictive dietary options appear to be nearly as effective as classic ketogenic diet for amelioration of seizures. The latest implantable devices include responsive neurostimulation and deep brain stimulation. Corpus callosotomy is an effective treatment for some seizure types, and newer and less invasive approaches are being explored. Resective surgical options have demonstrated success in carefully selected patients despite generalized electrographic findings on electroencephalogram. The current literature reflects a widening range of clinical experience with newer anticonvulsant medications including cannabinoids, dietary therapies, surgical approaches, and neurostimulation devices for patients with intractable generalized epilepsy.
- Published
- 2019
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11. Truncating de novo mutations in the Krüppel-type zinc-finger gene ZNF148 in patients with corpus callosum defects, developmental delay, short stature, and dysmorphisms.
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Stevens SJ, van Essen AJ, van Ravenswaaij CM, Elias AF, Haven JA, Lelieveld SH, Pfundt R, Nillesen WM, Yntema HG, van Roozendaal K, Stegmann AP, Gilissen C, and Brunner HG
- Subjects
- Agenesis of Corpus Callosum pathology, Body Dysmorphic Disorders pathology, Child, Developmental Disabilities pathology, Female, Humans, Infant, Newborn, Male, Agenesis of Corpus Callosum genetics, Base Sequence, Body Dysmorphic Disorders genetics, DNA-Binding Proteins genetics, Developmental Disabilities genetics, Sequence Deletion, Transcription Factors genetics
- Abstract
Background: Krüppel-type zinc finger genes (ZNF) constitute a large yet relatively poorly characterized gene family. ZNF genes encode proteins that recognize specific DNA motifs in gene promotors. They act as transcriptional co-activators or -repressors via interaction with chromatin remodeling proteins and other transcription factors. Only few ZNF genes are currently linked to human disorders and identification of ZNF gene-associated human diseases may help understand their function. Here we provide genetic, statistical, and clinical evidence to support association of ZNF148 with a new intellectual disability (ID) syndrome disorder., Methods: Routine diagnostic exome sequencing data were obtained from 2172 patients with ID and/or multiple congenital anomalies., Results: In a cohort of 2172 patient-parent trios referred for routine diagnostic whole exome sequencing for ID and/or multiple congenital anomalies (MCA) in the period 2012-2016, four patients were identified who carried de novo heterozygous nonsense or frameshift mutations in the ZNF148 gene. This was the only ZNF gene with recurrent truncating de novo mutations in this cohort. All mutations resulted in premature termination codons in the last exon of ZNF148. The number of the de novo truncating mutations in the ZNF148 gene was significantly enriched (p = 5.42 × 10
-3 ). The newly described ZNF148-associated syndrome is characterized by underdevelopment of the corpus callosum, mild to moderate developmental delay and ID, variable microcephaly or mild macrocephaly, short stature, feeding problems, facial dysmorphisms, and cardiac and renal malformations., Conclusions: We propose ZNF148 as a gene involved in a newly described ID syndrome with a recurrent phenotype and postulate that the ZNF148 is a hitherto unrecognized but crucial transcription factor in the development of the corpus callosum. Our study illustrates the advantage of whole exome sequencing in a large cohort using a parent-offspring trio approach for identifying novel genes involved in rare human diseases.- Published
- 2016
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12. Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability.
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Lelieveld SH, Reijnders MR, Pfundt R, Yntema HG, Kamsteeg EJ, de Vries P, de Vries BB, Willemsen MH, Kleefstra T, Löhner K, Vreeburg M, Stevens SJ, van der Burgt I, Bongers EM, Stegmann AP, Rump P, Rinne T, Nelen MR, Veltman JA, Vissers LE, Brunner HG, and Gilissen C
- Subjects
- Carrier Proteins genetics, DNA-Binding Proteins genetics, Disks Large Homolog 4 Protein, Exome genetics, Heterogeneous-Nuclear Ribonucleoproteins genetics, Humans, Intracellular Signaling Peptides and Proteins genetics, Membrane Proteins genetics, Minor Histocompatibility Antigens genetics, Phenotype, Protein Kinases genetics, Protein Phosphatase 2C genetics, SOXD Transcription Factors genetics, Smad6 Protein genetics, Transcription Factors genetics, Ubiquitin-Protein Ligases genetics, rac1 GTP-Binding Protein genetics, Intellectual Disability genetics, Mutation genetics
- Abstract
To identify candidate genes for intellectual disability, we performed a meta-analysis on 2,637 de novo mutations, identified from the exomes of 2,104 patient-parent trios. Statistical analyses identified 10 new candidate ID genes: DLG4, PPM1D, RAC1, SMAD6, SON, SOX5, SYNCRIP, TCF20, TLK2 and TRIP12. In addition, we show that these genes are intolerant to nonsynonymous variation and that mutations in these genes are associated with specific clinical ID phenotypes.
- Published
- 2016
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13. Education Research: The pod system: An innovative strategy to reform residency teaching sessions in neurology.
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Stevens SJ, Fornari A, and Kanner R
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- Humans, Prospective Studies, Research, Surveys and Questionnaires, Internship and Residency, Neurology education
- Published
- 2016
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14. Phenotypic spectrum associated with PTCHD1 deletions and truncating mutations includes intellectual disability and autism spectrum disorder.
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Chaudhry A, Noor A, Degagne B, Baker K, Bok LA, Brady AF, Chitayat D, Chung BH, Cytrynbaum C, Dyment D, Filges I, Helm B, Hutchison HT, Jeng LJ, Laumonnier F, Marshall CR, Menzel M, Parkash S, Parker MJ, Raymond LF, Rideout AL, Roberts W, Rupps R, Schanze I, Schrander-Stumpel CT, Speevak MD, Stavropoulos DJ, Stevens SJ, Thomas ER, Toutain A, Vergano S, Weksberg R, Scherer SW, Vincent JB, and Carter MT
- Subjects
- Adolescent, Adult, Child, Child, Preschool, Exons, Facies, Female, Humans, Infant, Male, Young Adult, Autism Spectrum Disorder diagnosis, Autism Spectrum Disorder genetics, Intellectual Disability diagnosis, Intellectual Disability genetics, Membrane Proteins genetics, Mutation, Phenotype, Sequence Deletion
- Abstract
Studies of genomic copy number variants (CNVs) have identified genes associated with autism spectrum disorder (ASD) and intellectual disability (ID) such as NRXN1, SHANK2, SHANK3 and PTCHD1. Deletions have been reported in PTCHD1 however there has been little information available regarding the clinical presentation of these individuals. Herein we present 23 individuals with PTCHD1 deletions or truncating mutations with detailed phenotypic descriptions. The results suggest that individuals with disruption of the PTCHD1 coding region may have subtle dysmorphic features including a long face, prominent forehead, puffy eyelids and a thin upper lip. They do not have a consistent pattern of associated congenital anomalies or growth abnormalities. They have mild to moderate global developmental delay, variable degrees of ID, and many have prominent behavioral issues. Over 40% of subjects have ASD or ASD-like behaviors. The only consistent neurological findings in our cohort are orofacial hypotonia and mild motor incoordination. Our findings suggest that hemizygous PTCHD1 loss of function causes an X-linked neurodevelopmental disorder with a strong propensity to autistic behaviors. Detailed neuropsychological studies are required to better define the cognitive and behavioral phenotype., (© 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)
- Published
- 2015
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15. A recurrent deletion syndrome at chromosome bands 2p11.2-2p12 flanked by segmental duplications at the breakpoints and including REEP1.
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Stevens SJ, Blom EW, Siegelaer IT, and Smeets EE
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- Adolescent, Alleles, Child, Preschool, DNA Copy Number Variations, Developmental Disabilities genetics, Female, Genome-Wide Association Study, Homologous Recombination, Humans, Intellectual Disability genetics, Male, Membrane Proteins genetics, Nerve Tissue Proteins genetics, Oligonucleotide Array Sequence Analysis, Phenotype, alpha Catenin genetics, Chromosomes, Human, Pair 2 genetics, Membrane Transport Proteins genetics, Segmental Duplications, Genomic, Sequence Deletion
- Abstract
We identified an identical and recurrent 9.4-Mbp deletion at chromosome bands 2p11.2-2p12, which occurred de novo in two unrelated patients. It is flanked at the distal and proximal breakpoints by two homologous segmental duplications consisting of low copy repeat (LCR) blocks in direct orientation, which have >99% sequence identity. Despite the fact that the deletion was almost 10 Mbp in size, the patients showed a relatively mild clinical phenotype, that is, mild-to-moderate intellectual disability, a happy disposition, speech delay and delayed motor development. Their phenotype matches with that of previously described patients. The 2p11.2-2p12 deletion includes the REEP1 gene that is associated with spastic paraplegia and phenotypic features related to this are apparent in most 2p11.2-2p12 deletion patients, but not in all. Other hemizygous genes that may contribute to the clinical phenotype include LRRTM1 and CTNNA2. We propose a recurrent but rare 2p11.2-2p12 deletion syndrome based on (1) the identical, non-random localisation of the de novo deletion breakpoints in two unrelated patients and a patient from literature, (2) the patients' phenotypic similarity and their phenotypic overlap with other 2p deletions and (3) the presence of highly identical LCR blocks flanking both breakpoints, consistent with a non-allelic homologous recombination (NAHR)-mediated rearrangement.
- Published
- 2015
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16. Development of novel Asf1-H3/H4 inhibitors.
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Miknis GF, Stevens SJ, Smith LE, Ostrov DA, and Churchill ME
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- Humans, Molecular Chaperones, Cell Cycle Proteins antagonists & inhibitors, Histones antagonists & inhibitors
- Abstract
The histone chaperone anti-silencing function 1 (Asf1) has emerged as a promising target for therapeutic intervention for multiple cancers (Cell2006, 127, 458). Asf1 is involved in the packaging of the eukaryotic genome into chromatin, which is essential for normal growth, development, and differentiation, as this regulates all nuclear processes that use DNA as a substrate. Starting from a collection of HTS leads, we identified a series of N-acyl hydrazones as novel inhibitors of the Asf-histone H3/H4 interaction. These compounds represent the first example of inhibitors capable of disrupting the Asf1-H3/H4 complex., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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17. Genome-wide karyomapping accurately identifies the inheritance of single-gene defects in human preimplantation embryos in vitro.
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Natesan SA, Bladon AJ, Coskun S, Qubbaj W, Prates R, Munne S, Coonen E, Dreesen JC, Stevens SJ, Paulussen AD, Stock-Myer SE, Wilton LJ, Jaroudi S, Wells D, Brown AP, and Handyside AH
- Subjects
- Blastocyst, Female, Genome, Human, Humans, In Vitro Techniques, Male, Parents, Polymorphism, Single Nucleotide, Reproducibility of Results, Retrospective Studies, Chromosome Mapping methods, Genotyping Techniques methods, Karyotyping methods, Preimplantation Diagnosis methods
- Abstract
Purpose: Our aim was to compare the accuracy of family- or disease-specific targeted haplotyping and direct mutation-detection strategies with the accuracy of genome-wide mapping of the parental origin of each chromosome, or karyomapping, by single-nucleotide polymorphism genotyping of the parents, a close relative of known disease status, and the embryo cell(s) used for preimplantation genetic diagnosis of single-gene defects in a single cell or small numbers of cells biopsied from human embryos following in vitro fertilization., Methods: Genomic DNA and whole-genome amplification products from embryo samples, which were previously diagnosed by targeted haplotyping, were genotyped for single-nucleotide polymorphisms genome-wide detection and retrospectively analyzed blind by karyomapping., Results: Single-nucleotide polymorphism genotyping and karyomapping were successful in 213/218 (97.7%) samples from 44 preimplantation genetic diagnosis cycles for 25 single-gene defects with various modes of inheritance distributed widely across the genome. Karyomapping was concordant with targeted haplotyping in 208 (97.7%) samples, and the five nonconcordant samples were all in consanguineous regions with limited or inconsistent haplotyping results., Conclusion: Genome-wide karyomapping is highly accurate and facilitates analysis of the inheritance of almost any single-gene defect, or any combination of loci, at the single-cell level, greatly expanding the range of conditions for which preimplantation genetic diagnosis can be offered clinically without the need for customized test development.
- Published
- 2014
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18. Epstein-Barr virus DNA load in nasopharyngeal brushings and whole blood in nasopharyngeal carcinoma patients before and after treatment.
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Adham M, Greijer AE, Verkuijlen SA, Juwana H, Fleig S, Rachmadi L, Malik O, Kurniawan AN, Roezin A, Gondhowiardjo S, Atmakusumah D, Stevens SJ, Hermani B, Tan IB, and Middeldorp JM
- Subjects
- Adolescent, Adult, Carcinoma, Chemoradiotherapy, Child, Child, Preschool, DNA, Viral genetics, Early Diagnosis, Epstein-Barr Virus Infections diagnosis, Epstein-Barr Virus Infections therapy, Female, Follow-Up Studies, Herpesvirus 4, Human drug effects, Herpesvirus 4, Human radiation effects, Humans, Male, Nasopharyngeal Carcinoma, Nasopharyngeal Neoplasms diagnosis, Nasopharyngeal Neoplasms therapy, Nasopharynx drug effects, Nasopharynx radiation effects, Sensitivity and Specificity, Treatment Outcome, Viral Load drug effects, Viral Load radiation effects, Young Adult, DNA, Viral blood, Epstein-Barr Virus Infections virology, Herpesvirus 4, Human genetics, Nasopharyngeal Neoplasms virology, Nasopharynx virology
- Abstract
Purpose: Nasopharyngeal carcinoma (NPC) is consistently associated with Epstein-Barr virus (EBV) and highly prevalent in Indonesia. EBV-DNA load can be used for early diagnosis and may have prognostic value. In this study, EBV-DNA load was evaluated in minimal invasive nasopharyngeal (NP) brushings and whole blood for initial diagnosis and therapy assessment against the standard-of-care diagnosis by biopsy with EBV-RISH and standard EBV-IgA serology., Experimental Design: NP brushings and blood samples were collected from 289 consecutive ENT patients suspected of NPCs and 53 local healthy controls. EBV-DNA load was quantified by real-time PCR and serology by peptide-based EBV-IgA ELISA. Tissue biopsies were examined by routine histochemistry and by EBER RNA in situ hybridization., Results: Repeated NP brushing was well tolerated by patients and revealed high viral load in the 228 NPC cases at diagnosis than 61 non-NPC cancer cases and healthy controls (P < 0.001). The diagnostic value of EBV-DNA load in blood and EBV-IgA serology was inferior to the NP brush results. The level of EBV-DNA load in brushes of patients with NPC was not related to T, N, or M stage, whereas elevated EBV-DNA load in blood correlated with N and M stage. EBV-DNA levels in brushings and whole blood showed a significant reduction at 2 months after treatment (P = 0.001 and P = 0.005, respectively), which was not reflected in EBV-IgA serology., Conclusions: NP brush sampling combined with EBV-DNA load analysis is a minimal invasive and well-tolerated diagnostic procedure, suited for initial diagnosis and follow-up monitoring of NPCs.
- Published
- 2013
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19. SNP array-based copy number and genotype analyses for preimplantation genetic diagnosis of human unbalanced translocations.
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van Uum CM, Stevens SJ, Dreesen JC, Drüsedau M, Smeets HJ, Hollanders-Crombach B, Die-Smulders CE, Geraedts JP, Engelen JJ, and Coonen E
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- Blastomeres, Cell Line, Transformed, Embryo Implantation genetics, Embryo Transfer, Embryo, Mammalian, Female, Gene Dosage, Genotype, Genotyping Techniques, Humans, In Situ Hybridization, Fluorescence, Pregnancy, Translocation, Genetic, Chromosome Deletion, Chromosomes, Human genetics, Oligonucleotide Array Sequence Analysis methods, Polymorphism, Single Nucleotide, Preimplantation Diagnosis methods
- Abstract
Preimplantation genetic diagnosis (PGD) for chromosomal rearrangements (CR) is mainly based on fluorescence in situ hybridisation (FISH). Application of this technique is limited by the number of available fluorochromes, the extensive preclinical work-up and technical and interpretative artefacts. We aimed to develop a universal, off-the-shelf protocol for PGD by combining single-nucleotide polymorphism (SNP) array-derived copy number (CN) determination and genotyping for detection of unbalanced translocations in cleavage-stage embryos. A total of 36 cleavage-stage embryos that were diagnosed as unbalanced by initial PGD FISH analysis were dissociated (n=146) and amplified by multiple displacement amplification (MDA). SNP CNs and genotypes were determined using SNP array. Epstein-Barr Virus-transformed cell lines with known CR were used for optimising the genomic smoothing (GS) length setting to increase signal to noise ratio. SNP CN analysis showed 23 embryos (64%) that were unbalanced in all blastomeres for the chromosomes involved in the translocation, 5 embryos (14%) that were normal or balanced in all blastomeres and 8 embryos (22%) that were mosaic. SNP genotyping, based on analysis of informative SNP loci with opposing homozygous parental genotypes, confirmed partial monosomies associated with inheritance of unbalanced translocation in surplus embryos. We have developed a universal MDA-SNP array technique for chromosome CN analysis in single blastomeres. SNP genotyping could confirm partial monosomies. This combination of techniques showed improved diagnostic specificity compared with FISH and may provide more reliable PGD analysis associated with higher embryo transfer rate.
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- 2012
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20. A new syndrome of microtia with unilateral renal agenesis and short stature.
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Caglayan AO, Stevens SJ, Albrechts JC, Dundar M, and Engelen J
- Subjects
- Child, Preschool, Congenital Microtia, Ear abnormalities, Female, Humans, Kidney abnormalities, Syndrome, Body Height, Congenital Abnormalities, Kidney Diseases congenital
- Abstract
We report on a 13-month-old girl of first cousin parents who presented with a combination of short stature, bilateral microtia, proportionate short stature, distinctive facial features (bitemporal narrowing, long philtrum), and agenesis of the left kidney and a small right kidney. Clinical findings did not match any previously described syndromes with the anomalies seen in the patient. We performed SNP array analysis to characterize the observation as a novel syndrome and this was normal. We propose that this represents a new syndrome, likely of autosomal recessive inheritance., (Copyright © 2012 Wiley Periodicals, Inc.)
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- 2012
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21. Variable EBV DNA load distributions and heterogeneous EBV mRNA expression patterns in the circulation of solid organ versus stem cell transplant recipients.
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Greijer AE, Stevens SJ, Verkuijlen SA, Juwana H, Fleig SC, Verschuuren EA, Hepkema BG, Cornelissen JJ, Brooimans RA, Verdonck LF, and Middeldorp JM
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- Adolescent, Adult, B-Lymphocytes immunology, B-Lymphocytes virology, Child, DNA, Viral blood, DNA, Viral immunology, Epstein-Barr Virus Infections blood, Epstein-Barr Virus Infections immunology, Epstein-Barr Virus Nuclear Antigens genetics, Epstein-Barr Virus Nuclear Antigens immunology, Female, Herpesvirus 4, Human immunology, Humans, Leukocytes immunology, Leukocytes virology, Lymphoproliferative Disorders blood, Lymphoproliferative Disorders immunology, Lymphoproliferative Disorders virology, Male, Middle Aged, Monocytes immunology, Monocytes virology, RNA, Messenger biosynthesis, RNA, Messenger immunology, RNA, Viral biosynthesis, RNA, Viral immunology, T-Lymphocytes immunology, T-Lymphocytes virology, Viral Load, Viral Matrix Proteins genetics, Viral Matrix Proteins immunology, Viral Proteins genetics, Viral Proteins immunology, Young Adult, DNA, Viral genetics, Epstein-Barr Virus Infections virology, Herpesvirus 4, Human genetics, RNA, Messenger genetics, RNA, Viral genetics, Stem Cell Transplantation
- Abstract
Unlabelled: Epstein-Barr virus (EBV) driven post-transplant lymphoproliferative disease (PTLD) is a heterogeneous and potentially life-threatening condition. Early identification of aberrant EBV activity may prevent progression to B-cell lymphoma. We measured EBV DNA load and RNA profiles in plasma and cellular blood compartments of stem cell transplant (SCT; n = 5), solid organ transplant recipients (SOT; n = 15), and SOT having chronic elevated EBV-DNA load (n = 12). In SCT, EBV DNA was heterogeneously distributed, either in plasma or leukocytes or both. In SOT, EBV DNA load was always cell associated, predominantly in B cells, but occasionally in T cells (CD4 and CD8) or monocytes. All SCT with cell-associated EBV DNA showed BARTs and EBNA1 expression, while LMP1 and LMP2 mRNA was found in 1 and 3 cases, respectively. In SOT, expression of BARTs was detected in all leukocyte samples. LMP2 and EBNA1 mRNA was found in 5/15 and 2/15, respectively, but LMP1 mRNA in only 1, coinciding with severe PTLD and high EBV DNA., Conclusion: EBV DNA is differently distributed between white cells and plasma in SOT versus SCT. EBV RNA profiling in blood is feasible and may have added value for understanding pathogenic virus activity in patients with elevated EBV-DNA.
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- 2012
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22. MYT1L is a candidate gene for intellectual disability in patients with 2p25.3 (2pter) deletions.
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Stevens SJ, van Ravenswaaij-Arts CM, Janssen JW, Klein Wassink-Ruiter JS, van Essen AJ, Dijkhuizen T, van Rheenen J, Heuts-Vijgen R, Stegmann AP, Smeets EE, and Engelen JJ
- Subjects
- Abnormal Karyotype, Adolescent, Adult, Body Mass Index, Child, Child, Preschool, Chromosomes, Human, Pair 2 metabolism, DNA-Binding Proteins metabolism, Female, Haploinsufficiency, Humans, In Situ Hybridization, Fluorescence, Infant, Intellectual Disability metabolism, Male, Metaphase, Middle Aged, Neurogenesis, Obesity genetics, Oligonucleotide Array Sequence Analysis, Overweight genetics, Polymorphism, Single Nucleotide, Transcription Factors metabolism, Chromosome Deletion, Chromosomes, Human, Pair 2 genetics, DNA-Binding Proteins genetics, Intellectual Disability genetics, Transcription Factors genetics
- Abstract
A partial deletion of chromosome band 2p25.3 (2pter) is a rarely described cytogenetic aberration in patients with intellectual disability (ID). Using microarrays we identified deletions of 2p25.3, sized 0.37-3.13 Mb, in three adult siblings and three unrelated patients. All patients had ID, obesity or overweight and/or a square-shaped stature without overt facial dysmorphic features. Combining our data with phenotypic and genotypic data of three patients from the literature we defined the minimal region of overlap which contained one gene, i.e., MYT1L. MYT1L is highly transcribed in the mouse embryonic brain where its expression is restricted to postmitotic differentiating neurons. In mouse-induced pluripotent stem cell (iPS) models, MYT1L is essential for inducing functional mature neurons. These resemble excitatory cortical neurons of the forebrain, suggesting a role for MYT1L in development of cognitive functions. Furthermore, MYT1L can directly convert human fibroblasts into functional neurons in conjunction with other transcription factors. MYT1L duplication was previously reported in schizophrenia, indicating that the gene is dosage-sensitive and that shared neurodevelopmental pathways may be affected in ID and schizophrenia. Finally, deletion of MYT1, another member of the Myelin Transcription Factor family involved in neurogenesis and highly similar to MYT1L, was recently described in ID as well. The identification of MYT1L as candidate gene for ID justifies further molecular studies aimed at detecting mutations and for mechanistic studies on its role in neuron development and on neuropathogenic effects of haploinsufficiency., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2011
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23. Synthetic Studies Toward Providencin: Efficient Construction of a Furanyl-Cyclobutanone Fragment.
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Stevens SJ, Bérubé A, and Wood JL
- Abstract
Described is the construction of a furanyl-cylcobutanone fragment suited for incorporation into a synthesis of the naturally occurring anti-cancer agent Providencin.
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- 2011
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24. Hormonal therapy for epilepsy.
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Stevens SJ and Harden CL
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- Anticonvulsants therapeutic use, Humans, Menstrual Cycle physiology, Neurons physiology, Pregnanolone metabolism, Progesterone metabolism, Testosterone therapeutic use, Epilepsy drug therapy, Estrogens therapeutic use, Pregnanolone therapeutic use, Progesterone therapeutic use
- Abstract
In 2011, there are greater than 20 antiepileptic medications available. These medications work by modulating neuronal excitability. Reproductive hormones have been found to have a role in the pathogenesis and treatment of seizures by also altering neuronal excitability, especially in women with catamenial epilepsy. The female reproductive hormones have in general opposing effects on neuronal excitability; estrogens generally impart a proconvulsant neurophysiologic tone, whereas the progestogens have anticonvulsant effects. It follows then that fluctuations in the levels of serum progesterone and estrogen throughout a normal reproductive cycle bring about an increased or decreased risk of seizure occurrence based upon the serum estradiol/progesterone ratio. Therefore, using progesterone, its metabolite allopregnanolone, or other hormonal therapies have been explored in the treatment of patients with epilepsy.
- Published
- 2011
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25. Purified hexameric Epstein-Barr virus-encoded BARF1 protein for measuring anti-BARF1 antibody responses in nasopharyngeal carcinoma patients.
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Hoebe EK, Hutajulu SH, van Beek J, Stevens SJ, Paramita DK, Greijer AE, and Middeldorp JM
- Subjects
- Baculoviridae genetics, Carcinoma, Enzyme-Linked Immunosorbent Assay, Epstein-Barr Virus Infections virology, Escherichia coli genetics, Herpesvirus 4, Human immunology, Humans, Immunoglobulin A blood, Immunoglobulin G blood, Indonesia, Nasopharyngeal Carcinoma, Nasopharyngeal Neoplasms diagnosis, Nasopharyngeal Neoplasms virology, Recombinant Proteins isolation & purification, Viral Proteins immunology, Virology methods, Antibodies, Viral blood, Epstein-Barr Virus Infections diagnosis, Herpesvirus 4, Human isolation & purification, Viral Proteins isolation & purification
- Abstract
WHO type III nasopharyngeal carcinoma (NPC) is highly prevalent in Indonesia and 100% associated with Epstein-Barr virus (EBV). NPC tumor cells express viral proteins, including BARF1, which is secreted and is considered to have oncogenic and immune-modulating properties. Recently, we found conserved mutations in the BARF1 gene in NPC isolates. This study describes the expression and purification of NPC-derived BARF1 and analyzes humoral immune responses against prototype BARF1 (B95-8) and purified native hexameric BARF1 in sera of Indonesian NPC patients (n = 155) compared to healthy EBV-positive (n = 56) and EBV-negative (n = 16) individuals. BARF1 (B95-8) expressed in Escherichia coli and baculovirus, as well as BARF1-derived peptides, did not react with IgG or IgA antibodies in NPC. Purified native hexameric BARF1 protein isolated from culture medium was used in enzyme-linked immunosorbent assay (ELISA) and revealed relatively weak IgG and IgA responses in human sera, although it had strong antibody responses to other EBV proteins. Higher IgG reactivity was found in NPC patients (P = 0.015) than in regional Indonesian controls or EBV-negative individuals (P < 0.001). IgA responses to native BARF1 were marginal. NPC sera with the highest IgG responses to hexameric BARF1 in ELISA showed detectable reactivity with denatured BARF1 by immunoblotting. In conclusion, BARF1 has low immunogenicity for humoral responses and requires native conformation for antibody binding. The presence of antibodies against native BARF1 in the blood of NPC patients provides evidence that the protein is expressed and secreted as a hexameric protein in NPC patients.
- Published
- 2011
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26. Combination of Epstein-Barr virus scaffold (BdRF1/VCA-p40) and small capsid protein (BFRF3/VCA-p18) into a single molecule for improved serodiagnosis of acute and malignant EBV-driven disease.
- Author
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Fachiroh J, Stevens SJ, Haryana SM, and Middeldorp JM
- Subjects
- Biopsy, Blotting, Western, Carcinoma, Chromatography, Affinity, Escherichia coli genetics, Herpesvirus 4, Human genetics, Humans, Immunoglobulin M blood, Infectious Mononucleosis diagnosis, Infectious Mononucleosis virology, Molecular Weight, Nasopharyngeal Carcinoma, Nasopharyngeal Neoplasms diagnosis, Nasopharyngeal Neoplasms virology, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins isolation & purification, Sensitivity and Specificity, Serologic Tests methods, Antibodies, Viral blood, Antigens, Viral genetics, Antigens, Viral immunology, Capsid Proteins genetics, Capsid Proteins immunology, Epstein-Barr Virus Infections diagnosis, Herpesvirus 4, Human immunology, Virology methods
- Abstract
Current single Epstein-Barr virus (EBV) markers fail to reach 100% sensitivity for serodiagnosis of acute and malignant diseases associated with EBV infection. Previous study had identified immunodominant epitopes of VCA-p40 and VCA-p18, and indicated that these two VCA antigens may have diagnostic value for EBV-related diseases. A recombinant protein of the full-length BdRF1 fused to the immunodominant domain of BFRF3 as 6-his tagged protein in Escherichia coli was developed. The recombinant protein was extracted in 8M urea solution and purified by metal-affinity chromatography yielding a 55 kDa product (VCA-p40+18). VCA-p40+18 blot-strips examined for IgM reactivity in infectious mononucleosis samples yielded 100% sensitivity and specificity, with improved reactivity compared with IgM/VCA-p18-ELISAs. A recent study described a synthetic peptide-based IgA/[EBNA1+VCA-p18]-ELISA (IgA/EBV-ELISA), with a sensitivity of 90% for diagnosing nasopharyngeal carcinoma. Immunoblot analysis of biopsy-confirmed nasopharyngeal carcinoma cases with low or negative IgA/EBV-ELISA showed 100% IgG reactivity to VCA-p40 and VCA-p18 proteins. Evaluation of VCA-p40+18 as an additional marker for screening and diagnosis of nasopharyngeal carcinoma was carried out. The data showed positive IgA/VCA-p40+18 reactivity by ELISA for 63.6% (14 of 22) nasopharyngeal carcinoma samples that were missed by peptide-based IgA/EBV-ELISA, suggested VCA-p40+18 as an improved marker for nasopharyngeal carcinoma serodiagnosis. The VCA-p40+18 may be combined with an EBNA1 synthetic peptide as an antigen mixture in one or separate IgA ELISA for improved nasopharyngeal carcinoma serodiagnosis., (Copyright (c) 2010 Elsevier B.V. All rights reserved.)
- Published
- 2010
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27. Conserved mutation of Epstein-Barr virus-encoded BamHI-A Rightward Frame-1 (BARF1) gene in Indonesian nasopharyngeal carcinoma.
- Author
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Hutajulu SH, Hoebe EK, Verkuijlen SA, Fachiroh J, Hariwijanto B, Haryana SM, Stevens SJ, Greijer AE, and Middeldorp JM
- Abstract
Background: BamHI-A rightward frame-1 (BARF1) is a carcinoma-specific Epstein-Barr virus (EBV) encoded oncogene. Here we describe the BARF1 sequence diversity in nasopharyngeal carcinoma (NPC), other EBV-related diseases and Indonesian healthy EBV carriers in relation to EBV genotype, viral load and serology markers. Nasopharyngeal brushings from 56 NPC cases, blood or tissue from 15 other EBV-related disorders, spontaneous B cell lines (LCL) from 5 Indonesian healthy individuals and several prototype EBV isolates were analysed by PCR-direct sequencing., Results: Most NPC isolates revealed specific BARF1 nucleotide changes compared to prototype B95-8 virus. At the protein level these mutations resulted in 3 main substitutions (V29A, W72G, H130R), which are not considered to cause gross tertiary structure alterations in the hexameric BARF1 protein. At least one amino acid conversion was detected in 80.3% of NPC samples compared to 33.3% of non-NPC samples (p < 0.001) and 40.0% of healthy LCLs (p = 0.074). NPC isolates also showed more frequent codon mutation than non-NPC samples. EBV strain typing revealed most isolates as EBV type 1. The viral load of either NPC or non-NPC samples was high, but only in non- NPC group it related to a particular BARF1 variant. Serology on NPC sera using IgA/EBNA-1 ELISA, IgA/VCA-p18 ELISA and immunoblot score showed no relation with BARF1 sequence diversity (p = 0.802, 0.382 and 0.058, respectively). NPC patients had variable antibody reactivity against purified hexameric NPC-derived BARF1 irrespective of the endogenous BARF1 sequence., Conclusion: The sequence variation of BARF1 observed in Indonesian NPC patients and controls may reflect a natural selection of EBV strains unlikely to be predisposing to carcinogenesis. The conserved nature of BARF1 may reflect an important role in EBV (epithelial) persistence.
- Published
- 2010
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28. A translocation in acute lymphoblastic leukemia that cytogenetically mimics the recurrent MLL-AFF1 translocation and fuses SEPT11 to MLL.
- Author
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Stevens SJ, Meers LE, Albrechts JC, Mebis-Verhees K, Bos GM, Engelen JJ, and Janssen JW
- Subjects
- Base Sequence, Chromosomes, Human, Pair 11, Chromosomes, Human, Pair 4, DNA Primers, Histone-Lysine N-Methyltransferase, Humans, Karyotyping, Male, Middle Aged, Reverse Transcriptase Polymerase Chain Reaction, Septins, Transcriptional Elongation Factors, Cell Cycle Proteins genetics, DNA-Binding Proteins genetics, Gene Fusion, Myeloid-Lymphoid Leukemia Protein genetics, Nuclear Proteins genetics, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics, Translocation, Genetic
- Abstract
A 55-year-old man sought care for aggressive acute lymphoblastic leukemia (ALL), which developed 8 years after he had received chemotherapeutic treatment for nephrotic syndrome. The sole cytogenetic abnormality observed in bone marrow-derived metaphases was a t(4;11)(q21;q23), which is a frequently occurring translocation in ALL. However, subsequent reverse transcriptase-polymerase chain reaction for the expected mixed lineage leukemia [trithorax homolog, Drosophila] (MLL)-AFF1 fusion transcript was negative. Further fluorescence in situ hybridization (FISH) analysis narrowed the 4q21 breakpoint down to a 250-kb region proximal of AFF1. This comprised four genes, of which septin11 (SEPT11) was further analyzed. Reverse transcriptase-polymerase chain reaction revealed expression of a chimeric MLL-SEPT11 transcript, thus identifying what is to our knowledge a hitherto undescribed translocation in ALL. Sequence analysis of cDNA showed in-frame fusion of MLL exon 11 to SEPT11 exon 2. This MLL-SEPT11 fusion is cytogenetically indistinguishable from the recurrent t(4;11)(q21;q23). Thus, it is crucial to characterize cytogenetic aberrations in leukemia by molecular methods, even in cases where a known recurrent translocation is presumed. This report expands the spectrum of ALL-related translocations and hypothesizes on the mechanism leading to the MLL-SEPT11 fusion. Five septins have been identified thus far as MLL fusion partners in leukemia. Their putative oncogenic role may be related to forced MLL dimerization by the septin coiled coil and GTP-binding domains, which could convert MLL to an oncogene., (Copyright (c) 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
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29. Partial monosomy 8p/trisomy 8q in a newborn infant due to a maternal three-way translocation: Clinical and cytogenetic comparison with San Luis Valley syndrome.
- Author
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Stevens SJ, Smeets EE, van den Broek N, Droog RP, Breukels MA, Albrechts JC, Rauh-van Delst M, Traa E, Lennarts M, Janssen JW, and Engelen JJ
- Subjects
- Cytogenetic Analysis, Humans, Infant, Newborn, Male, Monosomy pathology, Syndrome, Trisomy pathology, Abnormalities, Multiple genetics, Chromosomes, Human, Pair 8 genetics, Monosomy genetics, Translocation, Genetic, Trisomy genetics
- Published
- 2010
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30. A phase I trial of epstein-barr virus gp350 vaccine for children with chronic kidney disease awaiting transplantation.
- Author
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Rees L, Tizard EJ, Morgan AJ, Cubitt WD, Finerty S, Oyewole-Eletu TA, Owen K, Royed C, Stevens SJ, Shroff RC, Tanday MK, Wilson AD, Middeldorp JM, Amlot PL, and Steven NM
- Subjects
- Adolescent, Animals, CHO Cells immunology, Child, Child, Preschool, Cricetinae, Cricetulus, Humans, Immunoglobulin G blood, Immunoglobulin G drug effects, Infant, Membrane Glycoproteins genetics, Viral Matrix Proteins genetics, Herpesvirus 4, Human immunology, Kidney Failure, Chronic immunology, Kidney Transplantation immunology, Membrane Glycoproteins immunology, Vaccines, Synthetic toxicity, Viral Matrix Proteins immunology, Viral Vaccines toxicity
- Abstract
BACKGROUND.: Vaccination against Epstein-Barr virus (EBV), inducing an antibody response to the envelope glycoprotein gp350, might protect EBV-negative children with chronic kidney disease from lymphoproliferative disease after transplantation. METHODS.: A phase I trial recruited children with chronic kidney disease to two successive cohorts given three injections of 12.5 microg (n=6) and 25 microg (n=10) recombinant gp350/alhydrogel vaccine over 6 to 8 weeks. RESULTS.: One in each cohort acquired wild EBV before the week 28 evaluation. Both doses were similarly immunogenic, inducing an IgG response in all 13 evaluable patients. Neutralizing antibodies were detected in four recipients (1/4 in the 12.5 microg and 3/9 in the 25 microg cohort). Median time from first vaccination to transplantation was 24 weeks. Immune responses declined rapidly and were unlikely to affect posttransplant events. DISCUSSION.: The vaccine was immunogenic but a prolonged vaccine schedule up to time of transplantation or improved adjuvants are required in future trials to reduce posttransplant EBV load and risk of lymphoproliferative disease.
- Published
- 2009
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31. Identical cryptic partial monosomy 20pter and trisomy 20qter in three adult siblings due to a large maternal pericentric inversion: detection by MLPA and breakpoint mapping by SNP array analysis.
- Author
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Stevens SJ, Smeets EE, Blom E, van Uum CM, Albrechts JC, Herbergs J, Janssen JW, and Engelen JJ
- Subjects
- Abnormalities, Multiple genetics, Adult, Chromosome Breakage, Chromosome Mapping methods, Female, Humans, Inheritance Patterns genetics, Male, Microarray Analysis methods, Mothers, Nucleic Acid Amplification Techniques, Polymorphism, Single Nucleotide, Young Adult, Chromosome Deletion, Chromosome Inversion genetics, Chromosomes, Human, Pair 20, Siblings, Trisomy diagnosis, Trisomy genetics
- Abstract
Genotypic and phenotypic data are presented on three adult siblings with mild to moderate mental retardation and mild dysmorphic features. All three siblings showed a chromosome 20 gain at the q-telomere and loss at the p-telomere in routine subtelomeric MLPA screening. Analysis of GTG-banded chromosomes did not detect any abnormalities, but subtelomeric fluorescent in situ hybridization (FISH) confirmed cryptic partial monosomy of chromosome region 20p13 --> 20pter and cryptic partial trisomy of chromosome region 20q13.33 --> 20qter. Furthermore, FISH analysis in the mother showed a cryptic inv(20)(p13q13.33). This explained the cytogenetic mechanism underlying the chromosomal imbalance in the three children, that is, the meiotic formation of a recombinant chromosome 20 due to crossing-over in the inverted segment. All three children thus carried a rec(20)dup(20q)inv(20)(p13q13.33)mat chromosome. SNP array analysis enabled rapid and detailed imbalance sizing and showed a 1.06 Mb loss in 20p13 and a 2.51 Mb gain in 20q13.33, comprising 21 and 78 genes, respectively. The maternal inversion is the largest described thus far for chromosome 20, comprising 94.4% of its length. Such large inversions result in a particularly high risk for live-born unbalanced offspring because the partial monosomy and trisomy segments are small. Moreover, the inversion size is directly related to the percentage of unbalanced gametes due to high crossing-over change within the inverted segment. The fact that all three children carry an identical chromosomal rearrangement has consequences for genetic counseling for carriers of large pericentric inversions, as the recurrence risk is very high.
- Published
- 2009
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32. Response: a sensible division of labor.
- Author
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McDonald D, Stevens SJ, and Strauss S
- Subjects
- Humans, Continuity of Patient Care organization & administration, Contract Services organization & administration, Criminal Law organization & administration, Prisons organization & administration, Substance-Related Disorders therapy
- Published
- 2009
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33. Women and substance abuse: gender, age, and cultural considerations.
- Author
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Stevens SJ, Andrade RA, and Ruiz BS
- Subjects
- Adult, Aged, Alcohol Drinking ethnology, Attitude to Health ethnology, Behavior, Addictive ethnology, Behavior, Addictive psychology, Cultural Characteristics, Ethnicity statistics & numerical data, Female, Gender Identity, History, 17th Century, History, 18th Century, History, 19th Century, History, 20th Century, History, 21st Century, Humans, Male, Mental Health, Middle Aged, Psychological Trauma history, Psychological Trauma psychology, Substance-Related Disorders history, Substance-Related Disorders psychology, Women's Health history, Young Adult, Substance-Related Disorders ethnology, Women's Health ethnology
- Abstract
Historically, data has shown that a smaller percentage of women use alcohol and illicit substances compared to men, and that frequency of use has been lower among women compared to use among men. Although this data on usage may be true, researchers also acknowledge that substance use among women has been a hidden issue, one not realistically acknowledged by society, especially prior to the mid-1960s. Along with this, more recent data indicates that rates of substance use among women are increasing. Factors contributing to this increase in substance abuse have begun to receive considerable attention, and recent research suggests that many issues exist that are unique to substance use among women. The purpose of this article is to discuss gender specific considerations in women's substance abuse by examining the history of substance use among women; analyzing gender-specific factors, including physiological factors, trauma-related factors, mental health issues, and cultural considerations that impact on women's substance use; articulating treatment approaches for working with substance abusing women and girls; and providing recommendations for further research in this area.
- Published
- 2009
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34. Monitoring of EBV reactivation is justified in patients with aplastic anemia treated with rabbit ATG as a second course of immunosuppression.
- Author
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Wondergem MJ, Stevens SJ, Janssen JJ, Oudejans JJ, Ossenkoppele GJ, Middeldorp JM, and Zweegman S
- Subjects
- Adult, Anemia, Aplastic virology, Animals, Female, Humans, Immunotherapy, Rabbits, Anemia, Aplastic immunology, Anemia, Aplastic therapy, Antilymphocyte Serum immunology, Antilymphocyte Serum therapeutic use, Herpesvirus 4, Human physiology, Immunosuppressive Agents therapeutic use, Virus Activation
- Published
- 2008
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35. Aberrant Epstein-Barr virus persistence in HIV carriers is characterized by anti-Epstein-Barr virus IgA and high cellular viral loads with restricted transcription.
- Author
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Stevens SJ, Smits PH, Verkuijlen SA, Rockx DA, van Gorp EC, Mulder JW, and Middeldorp JM
- Subjects
- Adult, Antigens, Viral immunology, Autoradiography, Capsid Proteins immunology, DNA, Viral blood, Epstein-Barr Virus Infections immunology, HIV Seropositivity immunology, Herpesvirus 4, Human genetics, Humans, Lymphoma, B-Cell immunology, Transcription, Genetic, Viral Load, Virus Latency, Epstein-Barr Virus Infections virology, Epstein-Barr Virus Nuclear Antigens immunology, HIV Seropositivity virology, Herpesvirus 4, Human physiology, Immunoglobulin A blood, Lymphoma, B-Cell virology
- Abstract
Objective: Epstein-Barr virus (EBV)-positive lymphomas in HIV carriers are paralleled by elevated EBV-DNA loads in the circulation. Approximately 20% of asymptomatic HIV carriers also show elevated circulating EBV-DNA loads. We aimed to characterize the nature of this EBV DNA and to determine the transcriptional phenotype of EBV in blood, in relation to serological parameters., Design: A total of 197 random asymptomatic HIV carriers, representing 2% of the Dutch HIV-positive population, were sampled for blood, peripheral blood mononuclear cells and plasma. In addition, 39 EBV-DNA carriers were sampled twice, with a 5-year interval., Methods: EBV-DNA loads were determined by LightCycler-based real-time polymerase chain reaction (PCR). EBV transcription was studied by nucleic acid sequence-based amplification and reverse transcriptase PCR. IgA and IgG antibodies to EBV antigens EBNA1 and VCA-p18 were quantified by synthetic peptide-based enzyme-linked immunosorbent assay., Results: : Elevated EBV-DNA loads were found in whole blood of 19.3% of the tested HIV population, which were persistent in 82%. Plasma samples were EBV-DNA negative and circulating EBV DNA could be attributed to the B-cell compartment. Transcription of only LMP2 and (non-translated) transcripts from the BamHI-A region of the EBV genome was found, whereas EBNA1, LMP1 and lytic EBV transcripts were absent despite high cellular EBV-DNA loads. IgA-reactivity to VCA-p18 was seen in 69%. IgG to VCA-p18 was significantly higher in high EBV-DNA load carriers., Conclusion: Asymptomatic HIV carriers show aberrant EBV persistence in the circulation, characterized by elevated, B-cell-associated EBV-DNA loads. EBV transcription is restricted, arguing for EBV gene shutdown in circulating EBV-carrying B cells. Increased IgA and IgG reactive to VCA-p18 is indicative of increased lytic EBV replication, possibly occurring at mucosal lymphoid sites but not in the circulation.
- Published
- 2007
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36. Parental involvement, psychological distress, and sleep: a preliminary examination in sleep-disturbed adolescents with a history of substance abuse.
- Author
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Cousins JC, Bootzin RR, Stevens SJ, Ruiz BS, and Haynes PL
- Subjects
- Adolescent, Adolescent Behavior psychology, Female, Follow-Up Studies, Humans, Interview, Psychological methods, Male, Sleep Wake Disorders complications, Social Environment, Stress, Psychological complications, Substance-Related Disorders complications, Parent-Child Relations, Parenting psychology, Sleep, Sleep Wake Disorders psychology, Stress, Psychological psychology, Substance-Related Disorders psychology
- Abstract
The relationships between family environment and psychological distress and between psychological distress and sleep disturbance in adolescents are well established. However, less is known about the influence of family environment on sleep disturbance. The authors' goal is to examine the effects of parental involvement on psychological distress and sleep disturbance in 34 adolescents with a history of substance abuse. Linear regression techniques and confidence intervals were used to test the significance of mediation analyses. Lower levels of parental involvement were associated with higher levels of psychological distress, and higher levels of psychological distress were associated with lower sleep efficiency and more time spent in bed. Follow-up analyses found that higher levels of parental involvement were associated with earlier morning arising times, when controlling for psychological distress. These data indicate that psychological distress is important to consider when examining the relationship between parental involvement and sleep in adolescents.
- Published
- 2007
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37. Epstein-Barr virus (EBV) serology for predicting distant metastases in a white juvenile patient with nasopharyngeal carcinoma and no clinical response to EBV lytic induction therapy.
- Author
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Stevens SJ, Zwaan CM, Verkuijlen SA, and Middeldorp JM
- Subjects
- Adolescent, Fatal Outcome, Female, Humans, Lung Neoplasms blood, Lung Neoplasms secondary, Lung Neoplasms virology, Lymphatic Metastasis, Nasopharyngeal Neoplasms blood, Nasopharyngeal Neoplasms therapy, Neoplasm Metastasis, Serologic Tests, Antibodies, Viral blood, Herpesvirus 4, Human immunology, Immunoglobulin A blood, Immunoglobulin G blood, Nasopharyngeal Neoplasms pathology, Nasopharyngeal Neoplasms virology
- Abstract
Background: We describe a case of a 16-year-old white girl with Epstein-Barr virus (EBV)-positive nasopharyngeal carcinoma (NPC). METHODS.: At diagnosis, the patient had characteristic immunoglobulin (Ig)A and IgG responses to EBNA1, viral capsid antigen (VCA)-p18, and early antigens (EAs), with no detectable EBV DNA in her blood. Combined chemotherapy and radiotherapy resulted in complete remission. Eighteen months later, the patient's IgA responses to EBNA1 and p18 and both IgA and IgG anti-EA increased, without apparent recurrence. Five months later, lung metastases were found. She underwent surgical removal of the lung metastases and conventional chemotherapy, but had intraabdominal lymph node metastasis and mediastinal lesions develop. The patient was then treated with a novel treatment consisting of 5-fluorouracil plus valproic acid and subsequent valganciclovir to induce lytic EBV replication. This resulted in the first detectable EBV DNA levels in the blood but did not result in clinical response., Results: The patient's disease progressed, and the patient declined further cancer treatment and died., Conclusion: In contrast to EBV DNA load, EBV serology was useful in predicting distant NPC metastasis after initial complete remission in this patient.
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- 2006
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38. Noninvasive diagnosis of nasopharyngeal carcinoma: nasopharyngeal brushings reveal high Epstein-Barr virus DNA load and carcinoma-specific viral BARF1 mRNA.
- Author
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Stevens SJ, Verkuijlen SA, Hariwiyanto B, Harijadi, Paramita DK, Fachiroh J, Adham M, Tan IB, Haryana SM, and Middeldorp JM
- Subjects
- Animals, Cell Line, Transformed, Cell Line, Tumor, Cytodiagnosis methods, DNA, Viral blood, DNA, Viral genetics, Epstein-Barr Virus Infections blood, Epstein-Barr Virus Infections virology, Epstein-Barr Virus Nuclear Antigens genetics, Humans, Indonesia, Nasopharyngeal Neoplasms blood, Nasopharyngeal Neoplasms virology, Nasopharynx virology, Prospective Studies, RNA, Messenger genetics, RNA, Messenger metabolism, Reproducibility of Results, Reverse Transcriptase Polymerase Chain Reaction, Sensitivity and Specificity, Viral Load, Viral Matrix Proteins genetics, Viral Proteins genetics, Epstein-Barr Virus Infections diagnosis, Herpesvirus 4, Human genetics, Nasopharyngeal Neoplasms diagnosis, Nasopharynx pathology
- Abstract
Nasopharyngeal carcinoma (NPC) is the most prevalent ENT-tumour in Indonesia. We investigated the primary diagnostic value of Epstein-Barr virus (EBV) DNA load and mRNA detection in noninvasive nasopharyngeal (NP) brushings, obtained prospectively from consecutive Indonesian ENT-patients with suspected NPC (N=106) and controls. A subsequent routine NP biopsy was taken for pathological examination and EBER-RISH, yielding 85 confirmed NPC and 21 non-NPC tumour patients. EBV DNA and human DNA load were quantified by real-time PCR. NP brushings from NPC patients contained extremely high EBV DNA loads compared to the 88 non-NPC controls (p<0.0001). Using mean EBV DNA load in controls plus 3 SD as cut-off value, specificity, sensitivity, positive and negative predictive values were 98, 90, 97 and 91%, respectively. Epstein-Barr nuclear antigen 1 (EBNA1) and the carcinoma-specific BARF1 mRNA were detected by nucleic acid sequence based amplification and found in 86 and 74% of NP brushings, confirming NPC tumour cell presence. EBV RNA positivity was even higher in fresh samples stored at -80 degrees C until RNA expression analyses (88% for both EBNA1 and BARF1). EBV RNA-negative NP brushings from proven NPC cases had the lowest EBV DNA loads, indicating erroneous sampling. No EBV mRNA was detected in NP brushings from healthy donors and non-NPC patients. In conclusion, EBV DNA load measurement combined with detection of BARF1 mRNA in simple NP brushings allows noninvasive NPC diagnosis. It reflects carcinoma-specific EBV involvement at the anatomical site of tumour development and reduces the need for invasive biopsies. This procedure may be useful for confirmatory diagnosis in large serological NPC screening programs and has potential as prognostic tool., (Copyright (c) 2006 Wiley-Liss, Inc.)
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- 2006
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39. Adolescents, substance abuse, and the treatment of insomnia and daytime sleepiness.
- Author
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Bootzin RR and Stevens SJ
- Subjects
- Adolescent, Adult, Cognitive Behavioral Therapy, Emotions, Female, Health Status, Humans, Male, Photoperiod, Recurrence, Relaxation Therapy, Substance-Related Disorders psychology, Treatment Outcome, Adolescent Behavior, Sleep Initiation and Maintenance Disorders complications, Sleep Initiation and Maintenance Disorders therapy, Substance-Related Disorders etiology
- Abstract
Adolescence is a time of change that can be both exciting and stressful. In this review, we focus on the central role that disturbed sleep and daytime sleepiness occupies in interactions involving substance abuse and negative health, social, and emotional outcomes. As a means of improving sleep and lowering risk for recidivism of substance abuse, we developed and implemented a six-session group treatment to treat sleep disturbances in adolescents who have received treatment for substance abuse. The components of the treatment are stimulus control instructions, use of bright light to regularize sleep, sleep hygiene education, cognitive therapy, and Mindfulness-Based Stress Reduction. Preliminary evidence indicates that participants who completed four or more sessions in the treatment program showed improved sleep and that improving sleep may lead to a reduction in substance abuse problems at the 12-month follow-up.
- Published
- 2005
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40. Diagnostic value of measuring Epstein-Barr virus (EBV) DNA load and carcinoma-specific viral mRNA in relation to anti-EBV immunoglobulin A (IgA) and IgG antibody levels in blood of nasopharyngeal carcinoma patients from Indonesia.
- Author
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Stevens SJ, Verkuijlen SA, Hariwiyanto B, Harijadi, Fachiroh J, Paramita DK, Tan IB, Haryana SM, and Middeldorp JM
- Subjects
- Carcinoma virology, Herpesvirus 4, Human genetics, Herpesvirus 4, Human immunology, Humans, Immunoglobulin A blood, Immunoglobulin G blood, Indonesia, Nasopharyngeal Neoplasms virology, Viral Load, Antibodies, Viral blood, Carcinoma diagnosis, DNA, Viral blood, Herpesvirus 4, Human isolation & purification, Nasopharyngeal Neoplasms diagnosis, RNA, Messenger blood
- Abstract
Nasopharyngeal carcinoma (NPC) is a prevalent malignancy in Southeast Asia and is strongly associated with Epstein-Barr virus (EBV). We investigated the primary diagnostic value of circulating EBV DNA and anti-EBV immunoglobulin G (IgG) and IgA levels in Indonesian NPC patients (n = 149). By a 213-bp Epstein-Barr virus nuclear antigen 1 (EBNA1)-based real-time LightCycler PCR, 72.5% of patients were positive for EBV DNA in whole blood, with 29.5% having levels above a previously determined clinical cutoff value (COV) of 2,000 EBV DNA copies/ml, the upper level in healthy carriers. In a 99-bp LightCycler PCR, 85.9% of patients were positive and 60.4% had levels above the COV. This assay quantified a significantly higher EBV load than the 213-bp PCR assay (P < 0.0001), suggesting that circulating EBV DNA is fragmented. Using data from 11 different studies, we showed a significant inverse correlation between PCR amplicon size and the percentage of patients positive for circulating EBV DNA (Spearman's rho = -0.91; P < 0.0001). EBV DNA loads were unrelated to anti-EBV IgG or IgA levels, as measured by VCA-p18 and EBNA1-specific synthetic peptide-based enzyme-linked immunosorbent assays. The presence of circulating tumor cells was assessed by amplification of BamHI-A rightward frame 1 (BARF1) mRNA, a viral oncogene abundantly expressed in EBV-carrying carcinomas but virtually absent from EBV-associated lymphomas. Despite high EBV DNA loads and the presence of EBNA1 and human U1A small nuclear ribonucleoprotein mRNA, BARF1 mRNA was never detected in blood. We conclude that amplicon size significantly influences EBV DNA load measurement in NPC patients. The circulating EBV DNA load is independent of serological parameters and does not reflect intact tumor cells. The primary diagnostic value of the EBV DNA load for the detection of NPC is limited.
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- 2005
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41. Profiling of Epstein-Barr virus latent RNA expression in clinical specimens by gene-specific multiprimed cDNA synthesis and PCR.
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Stevens SJ, Brink AA, and Middeldorp JM
- Subjects
- Humans, DNA, Complementary, Herpesvirus 4, Human genetics, Polymerase Chain Reaction methods, RNA analysis
- Abstract
We describe a two-step RT-PCR method for simultaneous detection of EBNA-1 (QK and Y3K splice variants), EBNA-2, LMP-1, LMP-2a and -2b, ZEBRA, and BARTs RNA encoded by Epstein-Barr virus. As a control for RNA integrity, the low-copy-number transcript derived from U1A snRNP, a cellular housekeeping gene, is coamplified. Copy DNA (cDNA) for these nine targets is simultaneously synthesized in a gene-specific, multiprimed cDNA reaction, which strongly reduces the amount of required clinical specimen and allows more sensitive detection than random hexamer or oligo-dT priming. For amplification, cDNA synthesis is followed by nine separate PCRs for the mentioned targets. Primers were designed either as intron-flanking, to avoid background DNA amplification, or in different exons, allowing identification of differentially spliced RNA molecules. To increase specificity, PCR products are detected by autoradiography after hybridization with radiolabeled internal oligonucleotide probes. The method described is highly suitable for profiling EBV latent RNA expression in tissue biopsies, cultured or isolated cells, and unfractionated whole blood and for definition of EBV latency type I, II, or III gene expression in these samples.
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- 2005
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42. Quantitative detection of Epstein-Barr virus DNA in clinical specimens by rapid real-time PCR targeting a highly conserved region of EBNA-1.
- Author
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Stevens SJ, Verkuijlen SA, and Middeldorp JM
- Subjects
- Herpesvirus 4, Human genetics, Humans, DNA, Viral analysis, Epstein-Barr Virus Nuclear Antigens genetics, Herpesvirus 4, Human isolation & purification, Reverse Transcriptase Polymerase Chain Reaction methods
- Abstract
Here we describe a LightCycler-based real-time PCR for quantitative detection of EBV DNA in clinical samples such as unfractionated whole blood, serum, or plasma. This assay is based on amplification of a highly conserved 213-bp region of the EBNA-1 gene, a single-copy gene of EBV required for maintenance of the EBV genome within the infected host cell. For real-time detection of amplicons, two internal hybridization probes are added, labeled with the fluoregenic dyes fluorescein and LCRed640, respectively. Simultaneous hybridization of these probes to the amplification products brings them in close proximity. Subsequent excitation of the fluorescein label by filtered excitation light from a light source in the LightCycler device will lead to fluorescence energy transfer (FRET) from the fluorescein label to the LCRed640 label. The light emitted from the LCRed640 label is then measured and correlates to the amount of product generated. The cycle at which the fluorescence exceeds the background is designated the threshold cycle. By comparing the threshold cycle of a clinical specimen with those of standard curve samples, the amount of EBV DNA in clinical samples can be determined. This real-time PCR approach is extremely rapid owing to efficient heat conduction by using glass capillaries, small reaction volumes, and air as heating medium. The "closed-tube" system eliminates the risk of PCR contamination by product carryover and also the need for post-PCR detection.
- Published
- 2005
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43. Imaging of the ovary.
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Brewer MA, Utzinger U, Barton JK, Hoying JB, Kirkpatrick ND, Brands WR, Davis JR, Hunt K, Stevens SJ, and Gmitro AF
- Subjects
- Adolescent, Adult, Aged, Cell Proliferation, Female, Humans, Microscopy, Confocal, Middle Aged, Ovariectomy, Ovary blood supply, Spectrometry, Fluorescence, Tomography, Optical Coherence, Ovarian Neoplasms diagnosis, Ovarian Neoplasms pathology, Ovary cytology, Ovary pathology
- Abstract
Epithelial ovarian cancer has the highest mortality rate among the gynecologic cancers and spreads beyond the ovary in 90% of the women diagnosed with ovarian cancer. Detection before the disease has spread beyond the ovary would significantly improve the survival from ovarian cancer, which is currently only 30% over 5 years, despite extensive efforts to improve the survival. This study describes initial investigation of the use of optical technologies to improve the outcome for this disease by detecting cancers at an earlier and more treatable stage. Women undergoing oophorectomy were recruited for this study. Ovaries were harvested for fluorescence spectroscopy, confocal microscopy, and optical coherence tomography. Fluorescence spectroscopy showed large diagnostic differences between normal and abnormal tissue at 270 and 340 nm excitation. Optical coherence tomography was able to image up to 2mm deep into the ovary with particular patterns of backscattered intensity observed in normal versus abnormal tissue. Fluorescence confocal microscopy was able to visualize sub-cellular structures of the surface epithelium and underlying cell layers. Optical imaging and/or spectroscopy has the potential to improve the diagnostic capability in the ovary, but extended systematic investigations are needed to identify the unique signatures of disease. The combination of optical technologies supported by modern molecular biology may lead to an instrument that can accurately detect early carcinogenesis.
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- 2004
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44. Gender differences in substance use, mental health, and criminal justice involvement of adolescents at treatment entry and at three, six, twelve and thirty month follow-up.
- Author
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Stevens SJ, Estrada B, Murphy BS, McKnight KM, and Tims F
- Subjects
- Adolescent, Chi-Square Distribution, Crime psychology, Female, Follow-Up Studies, Humans, Linear Models, Male, Substance Abuse Treatment Centers statistics & numerical data, Substance-Related Disorders psychology, United States epidemiology, Crime statistics & numerical data, Mental Health statistics & numerical data, Sex Characteristics, Substance-Related Disorders epidemiology, Substance-Related Disorders therapy
- Abstract
Many adolescents entering substance abuse treatment have coexisting mental health problems and are criminally involved. Examination of the complexities of substance use, mental health, and criminal justice involvement along with changes in these issues following treatment is needed. This study includes 941 males and 266 females enrolled in seven drug treatment programs located in geographically diverse areas of the United States. Comparisons between males and females at treatment entry and three, six, 12 and 30 months later were examined with regard to substance use, mental health, and criminal justice involvement. Results indicate that females showed significantly greater severity in substance use, problems associated with use, and mental health related variables at intake while males had significantly more days on probation/parole. With respect to change over time, the rate of change in mental health and days on probation/parole differed between the sexes. Results indicate that while rate of change is different for males and females on most variables, there was positive change following treatment for both groups with regard to substance use, mental health, and probation/parole status. The high severity levels of females at intake calls for gender-specific outreach and identification along with gender-specific treatments.
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- 2004
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45. EBV-positive cutaneous B-cell lymphoproliferative disease after imatinib mesylate.
- Author
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Bekkenk MW, Vermeer MH, Meijer CJ, Jansen PM, Middeldorp JM, Stevens SJ, and Willemze R
- Subjects
- Aged, B-Lymphocytes pathology, Benzamides, Female, Humans, Imatinib Mesylate, Immunosuppression Therapy adverse effects, Leukemia, Myelogenous, Chronic, BCR-ABL Positive drug therapy, Lymphoproliferative Disorders pathology, Neoplasms, Second Primary pathology, Piperazines therapeutic use, Pyrimidines therapeutic use, Skin Neoplasms pathology, Herpesvirus 4, Human, Lymphoproliferative Disorders etiology, Neoplasms, Second Primary etiology, Piperazines adverse effects, Pyrimidines adverse effects, Skin Neoplasms etiology
- Published
- 2003
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46. Traumatic stress and gender differences in relationship to substance abuse, mental health, physical health, and HIV risk behavior in a sample of adolescents enrolled in drug treatment.
- Author
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Stevens SJ, Murphy BS, and McKnight K
- Subjects
- Adolescent, Adolescent Behavior, Ambulatory Care, Arizona epidemiology, Female, Humans, Linear Models, Logistic Models, Male, Risk-Taking, Sex Factors, Sexual Behavior, Stress Disorders, Post-Traumatic epidemiology, Substance-Related Disorders psychology, Health Status, Mental Health, Stress Disorders, Post-Traumatic psychology, Substance Abuse Treatment Centers, Substance-Related Disorders therapy
- Abstract
Research on traumatic stress (TS) among adolescent substance users is limited, with research indicating that not all adolescents who experience trauma are substance users and not all adolescent substance users report symptoms of TS. In the general adolescent population, research on TS symptoms indicates gender differences, with more females reporting traumatic life events and more symptoms associated with traumatic stress. A gap in research exists, however, with regard to gender differences among adolescent substance users who report low versus acute levels of TS symptoms. This study included 274 male and 104 female adolescents enrolled in four drug treatment programs in Arizona. Comparisons between males and females and those with low versus acute levels of TS symptoms were examined with regard to substance use, mental health, physical health, and HIV risk-taking behavior. Results indicate significant differences between males and females and between those reporting low versus acute TS. In general, females and those with acute levels of TS symptoms had higher levels of substance use, mental health, and physical health problems as well as greater HIV risk behaviors when compared to males and those with low levels of TS symptoms. Results of this study indicate the need to assess adolescents for TS, including victimization and maltreatment histories, when entering substance abuse treatment and the need to simultaneously address issues of substance use, TS, and related mental health, physical health, and HIV sex risk behavior while in treatment.
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- 2003
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47. Maltreatment issues and outcomes of adolescents enrolled in substance abuse treatment.
- Author
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Dennis ML and Stevens SJ
- Subjects
- Adolescent, Humans, Substance-Related Disorders psychology, United States, Child Abuse psychology, Substance Abuse Treatment Centers, Substance-Related Disorders therapy
- Abstract
Although they are mandated reporters and work regularly with youth who have experienced abuse and trauma, many substance abuse treatment programs do not systematically screen for or address child maltreatment issues. This special issue provides a collection of articles that consistently demonstrate the feasibility of systematically screening for victimization among adolescents entering these programs and documents that multiple co-occurring types of victimization are actually the norm. Other articles in the section examine how levels of abuse and traumatic victimization are associated with aspects of adolescent substance use disorders, traumatic distress symptoms, co-occurring somatic and health problems, HIV risk behaviors, and a victim-to-abuser spiral. Finally, the articles address how this might affect treatment matching across levels of care. This introduction provides an overview of the articles and then highlights some of the key implications of this collective body of work for practice, policy, and future research.
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- 2003
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48. Comparison of quantitative competitive PCR with LightCycler-based PCR for measuring Epstein-Barr virus DNA load in clinical specimens.
- Author
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Stevens SJ, Verkuijlen SA, Brule AJ, and Middeldorp JM
- Subjects
- Epstein-Barr Virus Infections virology, Humans, Lung Transplantation adverse effects, Lymphoproliferative Disorders virology, Reproducibility of Results, Sensitivity and Specificity, DNA, Viral blood, Herpesvirus 4, Human physiology, Polymerase Chain Reaction methods, Viral Load
- Abstract
The aim of this study was to develop a LightCycler-based real-time PCR assay for monitoring the Epstein-Barr virus (EBV) DNA load in unfractionated whole blood. This assay was compared with quantitative competitive PCR (Q-PCR) for EBV. The LightCycler-based assay was highly sensitive and reproducible when quantifying plasmid DNA in either the presence or absence of healthy donor blood DNA. Amplifying plasmid DNA in DNA backgrounds from different donors slightly increased the variation of quantification, indicating that clinical specimen DNA has an influence on quantification. In most transplant recipients, a good correlation was observed between EBV DNA load dynamics determined by LightCycler and Q-PCR in follow-up samples, although the correlation between absolute values of EBV DNA loads was weak and occasional samples were false negative in the LightCycler assay. In 253 cross-sectional blood samples from patients with Burkitt's lymphoma, infectious mononucleosis, or human immunodeficiency virus infection, a weak but significant correlation between the two methods was found (r(2) = 0.37, P < 0.001). Our results indicate that the clinical specimen DNA background may influence the absolute values of EBV DNA load in LightCycler analyses but that this effect is rare. LightCycler PCR is very well suited for monitoring of EBV DNA load dynamics, and its diagnostic value is comparable to that of Q-PCR. To avoid false negativity or underestimation of viral load, future internal calibration of the LightCycler is recommended. This would also enhance EBV load assay standardization and interinstitute comparisons.
- Published
- 2002
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49. High Epstein-Barr virus (EBV) DNA loads in HIV-infected patients: correlation with antiretroviral therapy and quantitative EBV serology.
- Author
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Stevens SJ, Blank BS, Smits PH, Meenhorst PL, and Middeldorp JM
- Subjects
- Blood Cells virology, CD4 Lymphocyte Count, DNA, Viral isolation & purification, Epstein-Barr Virus Infections blood, Epstein-Barr Virus Infections complications, Epstein-Barr Virus Infections epidemiology, HIV Infections complications, HIV Infections epidemiology, Herpesvirus 4, Human genetics, Herpesvirus 4, Human immunology, Herpesvirus 4, Human physiology, Humans, Netherlands epidemiology, Plasma virology, Polymerase Chain Reaction, Viral Load, Viremia epidemiology, Virus Activation, Anti-HIV Agents therapeutic use, Antibodies, Viral blood, Antiretroviral Therapy, Highly Active, DNA, Viral blood, Epstein-Barr Virus Infections virology, HIV Infections drug therapy, Herpesvirus 4, Human isolation & purification, Viremia virology
- Abstract
Objective: To study Epstein-Barr virus (EBV) DNA loads in peripheral blood of HIV carriers to determine base-line values and diagnostic relevance of viral load in relation to quantitative serology; to compare EBV presence in parallel plasma and unfractionated whole blood samples; and to correlate EBV DNA load to HIV, CD4 T-cell counts and HAART., Design: One-hundred and nine random patients receiving highly active antiretroviral therapy (HAART) during 1999 and 99 patients on anti-HIV monotherapy during 1993-1996 were included., Methods: EBV DNA load was determined by quantitative competitive PCR. EBV serology was determined by immunoblot profile and quantitative enzyme-linked immunosorbent assay for responses against VCA-p18 and EBNA-1., Results: Twenty-two out of 109 patients receiving HAART and 28 out of 99 of patients on anti-HIV monotherapy showed elevated EBV DNA loads in whole blood (> 2000 copies/ml), without elevated loads in parallel plasma. EBV DNA load distribution did not differ between the two groups (P = 0.78) and did not correlate with HIV or CD4 T-cell count. In three patients with high EBV DNA loads EBV RNA was virtually absent. Patients with high EBV DNA loads (3610-89 400 copies/ml) had higher anti-VCA-p18 IgG levels than patients with undetectable EBV DNA (P < 0.0001) but lower anti-EBNA-1 IgG levels (P = 0.005)., Conclusion: Absolute values of EBV DNA load may have poor diagnostic value for defining HIV patients at risk for developing EBV-associated disease. Elevated EBV DNA loads are cell-associated and are not influenced by HAART. Increased anti-p18-VCA and decreased anti-EBNA-1 IgG levels in patients with high EBV loads indicate impaired latency control and increased lytic replication suggesting disturbed overall immunosurveillance against EBV.
- Published
- 2002
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50. Role of Epstein-Barr virus DNA load monitoring in prevention and early detection of post-transplant lymphoproliferative disease.
- Author
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Stevens SJ, Verschuuren EA, Verkuujlen SA, Van Den Brule AJ, Meijer CJ, and Middeldorp JM
- Subjects
- Herpesvirus 4, Human genetics, Humans, Lymphoproliferative Disorders diagnosis, Lymphoproliferative Disorders prevention & control, Polymerase Chain Reaction, Prognosis, RNA, Viral analysis, DNA, Viral analysis, Herpesvirus 4, Human isolation & purification, Lymphoproliferative Disorders virology, Organ Transplantation adverse effects, Stem Cell Transplantation adverse effects, Viral Load
- Abstract
Posttransplant lymphoproliferative disease (PTLD) is a severe and life-threatening complication after stem cell or solid-organ transplantation, virtually always associated with presence of Epstein-Barr virus (EBV) in the proliferating cells. PTLD is probably caused by the iatrogenically impaired T-cell response allowing outgrowth of EBV-positive B-cells. Quantitative EBV DNA load monitoring is a minimally invasive technique increasingly recognized as a valuable tool in posttransplant patient management. In this review, we focus on the clinical utility of EBV DNA load monitoring in the peripheral blood of transplant recipients using PCR and we discuss the currently most-widely used techniques and their value and limitations in predicting and diagnosing PTLD. Options for EBV DNA load-guided pre-emptive therapy and application of monitoring EBV DNA load dynamics in the prediction of clinical response after therapy are described. Origins of elevated EBV DNA loads in immunosuppressed patients and recent insights in the EBV life cycle in the immuncompromised host are discussed. Finally, a standardization of methodology, clinical specimen type, and cut-off values is proposed. This is essential for comparisons between different institutes and more adequate patient management.
- Published
- 2002
- Full Text
- View/download PDF
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