1. Escherichia coli recombinant expression of SARS-CoV-2 protein fragments
- Author
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Dirk F. H. Winkler, Julia E Mela, Steven L. Pelech, Vanessa C Thompson, Bailey E. McGuire, Logan R Cucsksey, Ralph L McWhinnie, Claire E Stevens, and Francis E. Nano
- Subjects
Proteases ,medicine.medical_treatment ,Recombinant Fusion Proteins ,CBM9 ,Recombinant spike protein ,Bioengineering ,Receptors, Cell Surface ,medicine.disease_cause ,Antibodies, Viral ,Applied Microbiology and Biotechnology ,Microbiology ,Epitope ,Mass Spectrometry ,Antigen-Antibody Reactions ,medicine ,Escherichia coli ,Coronavirus Nucleocapsid Proteins ,Humans ,Carbohydrate-binding module ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,Protease ,biology ,Chemistry ,SARS-CoV-2 ,Research ,COVID-19 ,Phosphoproteins ,Fusion protein ,QR1-502 ,Amino acid ,Biochemistry ,Spike Glycoprotein, Coronavirus ,Protein Fragment ,biology.protein ,Antibody ,Biotechnology - Abstract
We have developed a method for the inexpensive, high-level expression of antigenic protein fragments of SARS-CoV-2 proteins in Escherichia coli. Our approach uses the thermophilic family 9 carbohydrate-binding module (CBM9) as an N-terminal carrier protein and affinity tag. The CBM9 module was joined to SARS-CoV-2 protein fragments via a flexible proline–threonine linker, which proved to be resistant to E. coli proteases. Two CBM9-spike protein fragment fusion proteins and one CBM9-nucleocapsid fragment fusion protein largely resisted protease degradation, while most of the CBM9 fusion proteins were degraded at some site in the SARS-CoV-2 protein fragment. All of the fusion proteins were highly expressed in E. coli and the CBM9-ID-H1 fusion protein was shown to yield 122 mg/L of purified product. Three purified CBM9-SARS-CoV-2 fusion proteins were tested and found to bind antibodies directed to the appropriate SARS-CoV-2 antigenic regions. The largest intact CBM9 fusion protein, CBM9-ID-H1, incorporates spike protein amino acids 540–588, which is a conserved region overlapping and C-terminal to the receptor binding domain that is widely recognized by human convalescent sera and contains a putative protective epitope.
- Published
- 2022