37 results on '"Steven Chow"'
Search Results
2. ID:15831 Targeted Peripheral Nerve Interventional Therapies for Chronic Pelvic Pain - Systematic Review Preliminary Results
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Jason Hamamoto, Kaiwen Guo, Steven Chow, and Behnum Habibi
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Anesthesiology and Pain Medicine ,Neurology ,Neurology (clinical) ,General Medicine - Published
- 2022
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3. Pre-malignant and Malignant Skin Lesions
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Steven Chow
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Pathology ,medicine.medical_specialty ,business.industry ,Medicine ,business ,Skin lesion ,Pre malignant - Published
- 2021
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4. Detection of ultrashort-chain and other per- and polyfluoroalkyl substances (PFAS) in U.S. bottled water
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Nadezda Ojeda, Joseph G. Jacangelo, Steven Chow, and Kellogg J. Schwab
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Environmental Engineering ,0208 environmental biotechnology ,Water source ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Tandem Mass Spectrometry ,Reverse osmosis ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology ,Civil and Structural Engineering ,Related factors ,Fluorocarbons ,Chemistry ,Ecological Modeling ,Drinking Water ,Bottled water ,Pollution ,Purified water ,020801 environmental engineering ,Environmental chemistry ,Global water cycle ,Water treatment ,Water Pollutants, Chemical ,Chromatography, Liquid ,Environmental Monitoring - Abstract
Per- and polyfluoroalkyl substances (PFAS) are compounds of emerging concern due to their persistence in the global water cycle and detection in drinking water sources. However, PFAS have been poorly studied in bottled water, especially in the United States. This study investigated the occurrence of PFAS and related factors in 101 uniquely labelled bottled water products for sale in the U.S. Products were screened for 32 target PFAS by solid phase extraction-liquid chromatography-tandem mass spectrometry (SPE-LC-MS/MS). Fifteen of 32 measured analytes were detected, consisting primarily of C3-C10 perfluorocarboxylic acids (PFCA) and C3-C6 and C8 perfluorosulfonic acids (PFSA). PFAS were detected above method detection limits in 39/101 tested products. The Σ32PFAS concentrations detected were 0.17–18.87 ng/L with a median of 0.98 ng/L; 97% of samples were below 5 ng/L. PFCA (83%) and short-chain perfluoroalkyl acids (PFAA) containing 5 or less CF2 groups (67%) were more prevalent on a mass basis than PFSA and longer-chain PFAA, respectively. Ultrashort-chain PFPrA, measured for the first time in bottled water, accounted for the greatest individual fraction of detected PFAS mass (42%) and was found almost exclusively in products labeled as Spring water. Purified water products contained significantly less PFAS than Spring water products, which was attributed to the use of reverse osmosis (RO) treatment in the majority of Purified waters (25/35) compared to Spring waters (1/45). RO-treated products contained significantly lower Σ32PFAS, long-chain, short-chain, and PFPrA concentrations than products without RO. Although no enforceable PFAS regulations exist for bottled water in the U.S., the finding that some products approach levels of concern justify a framework for monitoring PFAS in bottled water production.
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- 2021
5. Adaptation of selected models for describing competitive per- and polyfluoroalkyl substances breakthrough curves in groundwater treated by granular activated carbon
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Henry C. Croll, Steven Chow, Nadezda Ojeda, Kellogg Schwab, Carsten Prasse, Ryan Capelle, Jamie Klamerus, Joan Oppenheimer, and Joseph G. Jacangelo
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Fluorocarbons ,Environmental Engineering ,Charcoal ,Health, Toxicology and Mutagenesis ,Environmental Chemistry ,Pilot Projects ,Groundwater ,Pollution ,Waste Management and Disposal ,Water Pollutants, Chemical ,Water Purification - Abstract
Granular activated carbon (GAC) has proven to be a successful technology for per- and polyfluoroalkyl substances (PFAS) removal from contaminated drinking water supplies. Proper design of GAC treatment relies upon characterization of media service-life, which can change significantly depending on the PFAS contamination, treatment media, and water quality, and is often determined by fitting descriptive models to breakthrough curves. However, while common descriptive breakthrough models are favored for their ease-of-use, they have a significant shortcoming in that they are not able to properly fit PFAS desorption in competitive sorption scenarios. The present work adapts three common descriptive models to fit competitive PFAS breakthrough curves from a GAC pilot study. The adapted and original models were fit to the experimental breakthrough curves for 12 common PFAS and evaluated using adjusted R
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- 2022
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6. TerrANTALife 1.0 Biodiversity data checklist of known Antarctic terrestrial and freshwater life forms
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Luis Pertierra, Gilda Varliero, Andrés Barbosa, Elisabeth Biersma, Peter Convey, Steven Chown, Don Cowan, Asunción De Los Rios, Pablo Escribano-Alvarez, Diego Fontaneto, Ceridwen Fraser, Mathew Harris, Kevin Hughes, Huw Griffiths, Peter le Roux, Xiaoyue Liu, Heather Lynch, Roksana Majewska, Pablo Martinez, Marco Molina-Montenegro, Miguel Olalla-Tarraga, Lloyd Peck, Antonio Quesada, Cristina Ronquillo, Yan Ropert-Coudert, Leopoldo Sancho, Aleks Terauds, Juliana Vianna, Annick Wilmotte, Joaquín Hortal, and Michelle Greve
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Antarctica ,biodiversity ,polar fauna ,polar flora ,Biology (General) ,QH301-705.5 - Abstract
Incomplete species inventories for Antarctica represent a key challenge for comprehensive ecological research and conservation in the region. Additionally, data required to understand population dynamics, rates of evolution, spatial ranges, functional traits, physiological tolerances and species interactions, all of which are fundamental to disentangle the different functional elements of Antarctic biodiversity, are mostly missing. However, much of the fauna, flora and microbiota in the emerged ice-free land of the continent have an uncertain presence and/or unresolved status, with entire biodiversity compendia of prokaryotic groups (e.g. bacteria) being missing. All the available biodiversity information requires consolidation, cross-validation, re-assessment and steady systematic inclusion in order to create a robust catalogue of biodiversity for the continent.We compiled, completed and revised eukaryotic species inventories present in terrestrial and freshwater ecosystems in Antarctica in a new living database: terrANTALife (version 1.0). The database includes the first integration in a compendium for many groups of eukaryotic microorganisms. We also introduce a first catalogue of amplicon sequence variants (ASVs) of prokaryotic biodiversity. Available compendia and literature to date were searched for Antarctic terrestrial and freshwater species, integrated, taxonomically harmonised and curated by experts to create comprehensive checklists of Antarctic organisms. The final inventories comprises 470 animal species (including vertebrates, free-living invertebrates and parasites), 306 plants (including all Viridiplantae: embryophytes and green algae), 997 fungal species and 434 protists (sensu lato). We also provide a first account for many groups of microorganisms, including non-lichenised fungi and multiple groups of eukaryotic unicellular species (Stramenophila, Alveolata and Rhizaria (SAR), Chromists and Amoeba), jointly referred to as "protists". In addition, we identify 1753 bacterial (obtained from 348117 ASVs) and 34 archaeal genera (from 1848 ASVs), as well as, at least, 14 virus families. We formulate a basic tree of life in Antarctica with the main lineages listed in the region and their “known-accepted-species” numbers.
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- 2024
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7. Reconstruction of a Composite Medial Cheek Defect
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Laura Blumenthal, Steven Chow, and Brandon E. Cohen
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Skin Neoplasms ,Composite number ,Surgical Wound ,Dermatology ,General Medicine ,Anatomy ,Cheek ,Mohs Surgery ,Surgical Flaps ,medicine.anatomical_structure ,Treatment Outcome ,Carcinoma, Basal Cell ,medicine ,Humans ,Surgery ,Female ,Facial Neoplasms ,Geology ,Aged - Published
- 2020
8. Repair of a Composite Cheek and Nose Defect
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Richard G. Bennett and Steven Chow
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Male ,medicine.medical_specialty ,Skin Neoplasms ,Dermatologic Surgical Procedures ,Dermatology ,Surgical Flaps ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Facial neoplasm ,Nose ,Aged ,business.industry ,General Medicine ,Cheek ,Surgery ,medicine.anatomical_structure ,Carcinoma, Basal Cell ,030220 oncology & carcinogenesis ,Facial Neoplasms ,business - Published
- 2018
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9. Engineering of a miniaturized, robotic clinical laboratory
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Pradeep L. Ramachandran, Elizabeth A. Holmes, Chinmay Pangarkar, Karthik Jayasurya, Jared O'Leary, Chandan Shee, Alphonso Nguyen, Lucie S. Lee, Laura Hyland, Marilyn B. Nourse, Kevin D. Ha, Steven Chow, Samartha Anekal, Pradeep Bhatta, Steven F. Gessert, Ran Hu, Kate Engel, Renuka Shenoy, Yang Lily Liu, Bernardo Sosa-Padilla, Ushati Das, Amy Yuan, Jerald F. Sapida, Joy Roy, Peter Zhao, Lorraine Tran, Dariusz Wodziak, Amanda Trent, Daniel L. Young, Shekar Chandrasekaran, Amy R. Rappaport, Ken Quon, Andrew N. Kim, Yutao Chen, Timothy Michael Kemp, Arvind Jammalamadaka, Thomas C. Waggoner, Jocelyn A. Bailey, Channing R. Robertson, Xinwei Gong, Erez Galil, Nikolay V. Sergeev, Devayani Bhave, Sharada Sivaraman, and Paul Patel
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0301 basic medicine ,Analyte ,Spectrum analyzer ,business.industry ,Computer science ,Small footprint ,Biomedical Engineering ,Pharmaceutical Science ,030204 cardiovascular system & hematology ,Molecular diagnostics ,Laboratory testing ,Automation ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Virus type ,Minilab ,business ,Computer hardware ,Biotechnology - Abstract
The ability to perform laboratory testing near the patient and with smaller blood volumes would benefit patients and physicians alike. We describe our design of a miniaturized clinical laboratory system with three components: a hardware platform (ie, the miniLab) that performs preanalytical and analytical processing steps using miniaturized sample manipulation and detection modules, an assay-configurable cartridge that provides consumable materials and assay reagents, and a server that communicates bidirectionally with the miniLab to manage assay-specific protocols and analyze, store, and report results (i.e., the virtual analyzer). The miniLab can detect analytes in blood using multiple methods, including molecular diagnostics, immunoassays, clinical chemistry, and hematology. Analytical performance results show that our qualitative Zika virus assay has a limit of detection of 55 genomic copies/ml. For our anti-herpes simplex virus type 2 immunoglobulin G, lipid panel, and lymphocyte subset panel assays, the miniLab has low imprecision, and method comparison results agree well with those from the United States Food and Drug Administration-cleared devices. With its small footprint and versatility, the miniLab has the potential to provide testing of a range of analytes in decentralized locations.
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- 2018
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10. Application of piezo film for active dampening of a cantilever beam
- Author
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Steven Chow
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- 2019
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11. Phytoremediation of agriculture runoff by filamentous algae poly-culture for biomethane production, and nutrient recovery for secondary cultivation of lipid generating microalgae
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Mark Zivojnovich, Dean Yacar, Pavlo Bohutskyi, Yuting Tang, Steven Chow, Michael J. Betenbaugh, Edward J. Bouwer, Ben Ketter, and Coral Fung Shek
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Environmental Engineering ,Nitrogen ,020209 energy ,Biomass ,Bioengineering ,Chlorella ,macromolecular substances ,02 engineering and technology ,010501 environmental sciences ,Biology ,Waste Disposal, Fluid ,complex mixtures ,01 natural sciences ,Bioreactors ,Algae ,Microalgae ,0202 electrical engineering, electronic engineering, information engineering ,Anaerobiosis ,Fertilizers ,Waste Management and Disposal ,Effluent ,0105 earth and related environmental sciences ,Chlorella sorokiniana ,Renewable Energy, Sustainability and the Environment ,food and beverages ,Agriculture ,Esters ,Phosphorus ,General Medicine ,biology.organism_classification ,Lipids ,Anaerobic digestion ,Phytoremediation ,Biodegradation, Environmental ,Solubility ,Agronomy ,Biofuel ,Biofuels ,Biodiesel production ,Seasons ,Volatilization ,Methane ,Water Pollutants, Chemical - Abstract
An integrated system was implemented for water phytoremediation and biofuel production through sequential cultivation of filamentous algae followed by cultivation of lipid-producing microalgae Chlorella sorokiniana. Natural poly-culture of filamentous algae was grown in agricultural stormwater using the Algal Turf Scrubber®, harvested and subjected for lipid extraction and/or methane production using anaerobic digestion (AD). While filamentous algae lipid content was too low for feasible biodiesel production (
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- 2016
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12. Effects of inoculum size, light intensity, and dose of anaerobic digestion centrate on growth and productivity of Chlorella and Scenedesmus microalgae and their poly-culture in primary and secondary wastewater
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Chunyang Su, Natalie Byers, Laila Khaled Nasr, Michael J. Betenbaugh, Debora Cynamon Kligerman, Pavlo Bohutskyi, Steven Chow, Edward J. Bouwer, Yuting Tang, and Celine Cua
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0106 biological sciences ,Chlorella sorokiniana ,biology ,Biomass ,010501 environmental sciences ,biology.organism_classification ,01 natural sciences ,Chlorella ,Anaerobic digestion ,Light intensity ,Wastewater ,010608 biotechnology ,Botany ,Food science ,Agronomy and Crop Science ,Effluent ,Scenedesmus ,0105 earth and related environmental sciences - Abstract
Scale-up of microalgal biofuel technology is challenged by availability of nitrogen and phosphorus fertilizers and the potential negative impact vast increases in chemical fertilizer demand would have on conventional agriculture. The current study investigated replacement of chemical fertilizers with nutrients sourced from primary and secondary wastewater effluents and anaerobic digestion centrate (ADC). Although primary wastewater effluent possessed a high optical density (OD) and bacterial contamination, it was a superior growth medium for microalgal cultivation than nutrient-scarce secondary effluent. Chlorella sorokiniana and Scenedesmus acutus f. alternans showed higher growth rates, productivities, and robustness than other species or poly-cultures of five species. While supplementing with 5–10% nutrient-rich ADC increased wastewater OD, it also enhanced microalgal growth rates from 0.2–0.3 d − 1 to 0.7–0.9 d − 1 and biomass productivity from 10 to 20 mg L − 1 d to 40–60 mg L − 1 d with greater improvements for secondary effluents. Supplementation with ADC also increased nutrient concentrations (N, P, Mn, B, Zn, Co by > 100% and S, Mg, Ca, Mo by 20–60%) and improved the nitrogen to phosphorus (N:P) ratio. Higher ADC dose of 20% inhibited microalgae growth potentially due to ammonia toxicity. Elevation of inoculum doses and light intensity increased final biomass density and productivity, with intensities − 2 s − 1 limiting algal growth rates. Inoculum doses of ≥ 2.5 × 10 5 cell mL − 1 were most favorable for cultivation of all tested microalgae and for FAME content and composition for a newly characterized strain of Chlorella sorokiniana . Overall, ADC represents an economical fertilizer substitute providing various nutrients needed for microalgal growth and enhancing biofuel sustainability.
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- 2016
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13. Sequential biodegradation of 1,2,4-trichlorobenzene at oxic-anoxic groundwater interfaces in model laboratory columns
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Michelle M. Lorah, Neal D. Durant, Edward J. Bouwer, Steven Chow, and Amar R. Wadhawan
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biology ,Chemistry ,0207 environmental engineering ,02 engineering and technology ,Dehalobacter ,010501 environmental sciences ,Biodegradation ,Chlorobenzenes ,biology.organism_classification ,01 natural sciences ,Anoxic waters ,Article ,Biodegradation, Environmental ,Bioremediation ,Wetlands ,Environmental chemistry ,Reductive dechlorination ,Environmental Chemistry ,Aeration ,020701 environmental engineering ,Groundwater ,Anaerobic exercise ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
Halogenated organic solvents such as chlorobenzenes (CBs) are frequent groundwater contaminants due to legacy spills. When contaminated anaerobic groundwater discharges into surface water through wetlands and other transition zones, aeration can occur from various physical and biological processes at shallow depths, resulting in oxic-anoxic interfaces (OAIs). This study investigated the potential for 1,2,4-trichlorobenzene (1,2,4-TCB) biodegradation at OAIs. A novel upflow column system was developed to create stable anaerobic and aerobic zones, simulating a natural groundwater OAI. Two columns containing (1) sand and (2) a mixture of wetland sediment and sand were operated continuously for 295 days with varied doses of 0.14–1.4 mM sodium lactate (NaLac) as a model electron donor. Both column matrices supported anaerobic reductive dechlorination and aerobic degradation of 1,2,4-TCB spatially separated between anaerobic and aerobic zones. Reductive dechlorination produced a mixture of di- and monochlorobenzene daughter products, with estimated zero-order dechlorination rates up to 31.3 μM/h. Aerobic CB degradation, limited by available dissolved oxygen, occurred for 1,2,4-TCB and all dechlorinated daughter products. Initial reductive dechlorination did not enhance the overall observed extent or rate of subsequent aerobic CB degradation. Increasing NaLac dose increased the extent of reductive dechlorination, but suppressed aerobic CB degradation at 1.4 mM NaLac due to increased oxygen demand. 16S-rRNA sequencing of biofilm microbial communities revealed strong stratification of functional anaerobic and aerobic organisms between redox zones including the sole putative reductive dechlorinator detected in the columns, Dehalobacter. The sediment mixture column supported enhanced reductive dechlorination compared to the sand column at all tested NaLac doses and growth of Dehalobacter populations up to 4.1 × 108 copies/g (51% relative abundance), highlighting the potential benefit of sediments in reductive dechlorination processes. Results from these model systems suggest both substantial anaerobic and aerobic CB degradation can co-occur along the OAI at contaminated sites where bioavailable electron donors and oxygen are both present.
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- 2020
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14. Synergistic co-digestion of wastewater grown algae-bacteria polyculture biomass and cellulose to optimize carbon-to-nitrogen ratio and application of kinetic models to predict anaerobic digestion energy balance
- Author
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Pavlo Bohutskyi, Michael J. Betenbaugh, Anatoliy M. Kopachevsky, Duc Phan, Edward J. Bouwer, and Steven Chow
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Environmental Engineering ,Carbon-to-nitrogen ratio ,Nitrogen ,020209 energy ,Energy balance ,Biomass ,Bioengineering ,02 engineering and technology ,010501 environmental sciences ,Raw material ,Wastewater ,01 natural sciences ,chemistry.chemical_compound ,Bioreactors ,Biogas ,0202 electrical engineering, electronic engineering, information engineering ,Anaerobiosis ,Cellulose ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Bacteria ,Renewable Energy, Sustainability and the Environment ,General Medicine ,Pulp and paper industry ,Carbon ,Anaerobic digestion ,chemistry ,Biofuels ,Methane - Abstract
This study investigated enhancing methane production from algal-bacteria biomass by adjusting the C/N ratio through co-digestion with a nitrogen-poor co-substrate - cellulose. A biomethane potential test was used to determine cumulative biogas and methane production for pure and co-digested substrates. Four kinetic models were evaluated for their accuracy describing experimental data. These models were used to estimate the total energy output and net energy ratio (NER) for a scaled AD system. Increasing the algal C/N ratio from 5.7 to 20-30 (optimal algae:cellulose feedstock ratios of 35%:65% and 20%:80%) improved the ultimate methane yield by >10% and the first ten days production by >100%. The modified Gompertz kinetic model demonstrated highest accuracy, predicting that co-digestion improved methane production by reducing the time-lag by ∼50% and increasing rate by ∼35%. The synergistic effects increase the AD system energy efficiency and NER by 30-45%, suggesting potential for substantial enhancements from co-digestion at scale.
- Published
- 2018
15. Prospects for methane production and nutrient recycling from lipid extracted residues and whole Nannochloropsis salina using anaerobic digestion
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Pavlo Bohutskyi, Steven Chow, Ben Ketter, Edward J. Bouwer, and Michael J. Betenbaugh
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Biodiesel ,Waste management ,biology ,Chemistry ,Mechanical Engineering ,food and beverages ,Biomass ,Building and Construction ,Management, Monitoring, Policy and Law ,biology.organism_classification ,Methane ,Anaerobic digestion ,chemistry.chemical_compound ,General Energy ,Bioenergy ,Biofuel ,Food science ,Effluent ,Nannochloropsis - Abstract
Sustainable mass production of algal biofuels requires a reduction in nutrient demand and efficient conversion into fuels of all biomass including lipid-extracted algal residues (LEA). This study evaluated methane production, nutrient recovery and recycling from untreated and enzymatically pretreated Nannochloropsis LEA using semi-continuous anaerobic digestion (AD). Additionally, this process was compared to methane generation from whole Nannochloropsis alga (WA) and thermally pretreated WA. The methane production from untreated LEA and WA reached up to 0.22 L and 0.24 L per gram of biomass volatile solids (VS), respectively, corresponding to only 36–38% of the theoretical potential. Additionally, observed VS reduction was only 40–50% confirming biomass recalcitrance to biodegradation. While enzymatic treatment hydrolyzed up to 65% of the LEA polysaccharides, the methane production increased by only 15%. Alternatively, WA thermal pretreatment at 150–170 °C enhanced methane production up to 40%. Overall, an integrated process of lipid conversion into biodiesel coupled with LEA conversion into methane generates nearly 40% more energy compared to methane production from WA, and about 100% more energy than from biodiesel alone. Additionally, the AD effluent contained up to 60–70% of the LEA phosphorus content, 30–50% of the nitrogen, sulfur, calcium and boron, 20% of the iron and cobalt, and 10% of manganese, zinc and copper, which can partially replace chemical fertilizers during algal cultivation. Consequently, supplementation of Nannochloropsis cultures with 5% AD effluent was optimal for a high algal growth rate. Therefore, coupling biodiesel and methane production provides significant energy advantages along with sustainability and economic benefits from nutrient recycling.
- Published
- 2015
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16. Scar Revision
- Author
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Steven Chow and Richard Bennett
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- 2018
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17. Engineering of a miniaturized, robotic clinical laboratory
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Marilyn B, Nourse, Kate, Engel, Samartha G, Anekal, Jocelyn A, Bailey, Pradeep, Bhatta, Devayani P, Bhave, Shekar, Chandrasekaran, Yutao, Chen, Steven, Chow, Ushati, Das, Erez, Galil, Xinwei, Gong, Steven F, Gessert, Kevin D, Ha, Ran, Hu, Laura, Hyland, Arvind, Jammalamadaka, Karthik, Jayasurya, Timothy M, Kemp, Andrew N, Kim, Lucie S, Lee, Yang Lily, Liu, Alphonso, Nguyen, Jared, O'Leary, Chinmay H, Pangarkar, Paul J, Patel, Ken, Quon, Pradeep L, Ramachandran, Amy R, Rappaport, Joy, Roy, Jerald F, Sapida, Nikolay V, Sergeev, Chandan, Shee, Renuka, Shenoy, Sharada, Sivaraman, Bernardo, Sosa-Padilla, Lorraine, Tran, Amanda, Trent, Thomas C, Waggoner, Dariusz, Wodziak, Amy, Yuan, Peter, Zhao, Daniel L, Young, Channing R, Robertson, and Elizabeth A, Holmes
- Subjects
Research Report ,molecular diagnostics ,hematology ,laboratory testing ,diagnostics ,Research Reports ,immunoassay ,clinical chemistry ,automation - Abstract
The ability to perform laboratory testing near the patient and with smaller blood volumes would benefit patients and physicians alike. We describe our design of a miniaturized clinical laboratory system with three components: a hardware platform (ie, the miniLab) that performs preanalytical and analytical processing steps using miniaturized sample manipulation and detection modules, an assay‐configurable cartridge that provides consumable materials and assay reagents, and a server that communicates bidirectionally with the miniLab to manage assay‐specific protocols and analyze, store, and report results (i.e., the virtual analyzer). The miniLab can detect analytes in blood using multiple methods, including molecular diagnostics, immunoassays, clinical chemistry, and hematology. Analytical performance results show that our qualitative Zika virus assay has a limit of detection of 55 genomic copies/ml. For our anti‐herpes simplex virus type 2 immunoglobulin G, lipid panel, and lymphocyte subset panel assays, the miniLab has low imprecision, and method comparison results agree well with those from the United States Food and Drug Administration‐cleared devices. With its small footprint and versatility, the miniLab has the potential to provide testing of a range of analytes in decentralized locations.
- Published
- 2017
18. High-Throughput Single-Cell Targeted DNA Sequencing for Hematologic Cancers Using Droplet-Based Microfluidic Platform
- Author
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Jacob Ho, Adam Sciambi, Nigel Beard, Benchun Liu, Saurabh Gulati, Kaustubh Gokhale, Jacqueline Marin, Nianzhen Li, Mani Manivannan, Sombeet Sahu, Keith W. Jones, Charles Curt, Florencia Carrerou, Lubna Nousheen, Daniel Mendoza, Kathryn Thompson, Shu Wang, and Steven Chow
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Cancer Research ,medicine.anatomical_structure ,Oncology ,business.industry ,Microfluidics ,Cell ,Medicine ,Hematology ,Computational biology ,business ,Throughput (business) ,DNA sequencing - Published
- 2019
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19. Abstract 4696: High-throughput single-cell targeted DNA sequencing using an updated TapestriTM Platform reveals rare clones and clonal evolution for multiple blood cancers
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Nianzhen Li, Daniel Mendoza, Adam Sciambi, Mani Manivannan, Jacob Ho, Kaustubh Gokhale, Jacqueline Marin, Kathryn Thompson, Jamie Yates, Vasu Sharma, Steven Chow, Sombeet Sahu, Shu Wang, Dennis Eastburn, and Keith Jones
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Cancer Research ,Oncology - Abstract
Introduction: The challenge in precision medicine has been improving the understanding of cancer heterogeneity and clonal evolution, which has major implications in targeted therapy selection and disease monitoring. However, current bulk sequencing methods are unable to unambiguously identify rare pathogenic or drug-resistant cell populations and determine whether mutations co-occur within the same cell. Single-cell sequencing has the potential to provide unique insights on the cellular and genetic composition, drivers, and signatures of cancer at unparalleled sensitivity. Methods: Previously we have developed a high-throughput single-cell DNA analysis platform (TapestriTM) that leverages droplet microfluidics and a multiplex-PCR based targeted DNA sequencing approach, and demonstrated the generation of high-resolution maps of clonal architecture from acute myeloid leukemia (AML) tumors. Here we present an update to the Tapestri Platform which employs new biochemistry and features improved firmware, software, workflow, and data analysis solution resulting in higher throughput, better sensitivity, specificity and unprecedented flexibility. Results: From cell prep to sequencing-ready libraries, the workflow can be completed within 2 days, and new modifications have doubled the throughput to up to 20,000 genotyped cells per run from 10,000 shown previously. We have validated the performance of an AML (19 genes, 50 amplicons) and a CLL (chronic lymphocytic leukemia) (34 genes, 286 amplicons) panel. We also developed a robust web-based design portal for custom targets. The updated biochemistry enables easy addition of new gene and loci targets into existing panels for improved coverage and updated studies. Using longitudinal AML and CLL samples, we were able to detect rare subclones of Conclusion: We demonstrate that single-cell DNA sequencing can reveal the heterogeneity of blood cancers and map the clonal architecture and clonal evolution with higher sensitivity than bulk NGS methods. This is critical in patient stratification and drug selection over the entire course of treatment. Besides the catalog AML and CLL panels, the flexibility of system allows for analyzing SNV and indel mutations of any custom cancer DNA targets. Additionally, the system provides capabilities for quality control of gene edited cells, further advancing research into cancer therapies. Citation Format: Nianzhen Li, Daniel Mendoza, Adam Sciambi, Mani Manivannan, Jacob Ho, Kaustubh Gokhale, Jacqueline Marin, Kathryn Thompson, Jamie Yates, Vasu Sharma, Steven Chow, Sombeet Sahu, Shu Wang, Dennis Eastburn, Keith Jones. High-throughput single-cell targeted DNA sequencing using an updated TapestriTM Platform reveals rare clones and clonal evolution for multiple blood cancers [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 4696.
- Published
- 2019
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20. Staged Trilobe Pedicle Flap to Repair a Large Cutaneous Lip and Nasal Vestibule Defect
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Sandra Elizabeth Bendeck, Richard G. Bennett, and Steven Chow
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Male ,medicine.medical_specialty ,Pedicle flap ,business.industry ,Dermatology ,General Medicine ,Anatomy ,Nose ,Mohs Surgery ,Surgical Flaps ,Surgery ,Cheek ,medicine.anatomical_structure ,Carcinoma, Basal Cell ,Lip Neoplasms ,medicine ,Humans ,Nasal vestibule ,business ,Aged - Published
- 2012
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21. Superficial Head and Neck Anatomy for Dermatologic Surgery: Critical Concepts
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Steven Chow and Richard G. Bennett
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medicine.medical_specialty ,Head and neck anatomy ,business.industry ,medicine.medical_treatment ,Dermatologic Surgical Procedures ,Facial Muscles ,Dermatology ,General Medicine ,Mohs Surgery ,Surgical Flaps ,Surgery ,Head and Neck Neoplasms ,Mohs surgery ,Medicine ,Dermatologic surgery ,Humans ,Radiology ,business ,Head and neck ,Head ,Neck - Abstract
Background Thorough understanding of head and neck anatomy is useful and necessary for dermatologic surgery. Objective To highlight pertinent head and neck anatomic structures that are encountered during dermatologic surgery and correlate these with common surgical problems. Methods Important anatomic structures and regional cutaneous anatomy are discussed and illustrated. Results Several important anatomic structures exist within the head and neck that can influence surgical outcomes. Conclusion Anatomic knowledge is helpful to the dermatologic surgeon to optimize reconstructive outcomes.
- Published
- 2015
22. The Victory Stitch
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Steven Chow, Theresa L. Ray, Bart T. Endrizzi, Matthew W. Tsang, Peter K. Lee, Lydia I. Eleftheriou, and Christine H. Weinberger
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Wound Healing ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Dermatologic Surgical Procedures ,Suture Techniques ,Victory ,Dermatology ,General Medicine ,Mohs Surgery ,Surgery ,Mohs surgery ,medicine ,Humans ,Epidermis ,business - Published
- 2011
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23. Mohs Surgery for Periungual and Subungual Skin Cancer
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Richard G. Bennett and Steven Chow
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medicine.medical_specialty ,integumentary system ,business.industry ,Wide local excision ,medicine.medical_treatment ,medicine.disease ,Malignancy ,Dermatology ,medicine.anatomical_structure ,Amputation ,medicine ,Nail (anatomy) ,Mohs surgery ,Normal appearance ,Skin cancer ,business ,Nail matrix - Abstract
Mohs surgery for a malignancy in the periungual and subungual location is advantageous because it is a tissue-sparing technique that preserves maximum function and normal appearance. Traditional surgical treatment for such tumors is wide local excision and closure; in some cases, amputation of the digit is considered. The amount of tissue removed with these standard surgical treatments may be quite debilitating for the patient. Often, Mohs surgery will preserve a significant amount of nail matrix so that an almost normal-appearing nail regrows.
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- 2011
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24. Myocutaneous island pedicle 'sling' flap for correction of central upper cutaneous (philtral) lip defects
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Steven Chow, Peter K. Lee, and Theresa L. Ray
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medicine.medical_specialty ,Sling (implant) ,business.industry ,Dermatology ,General Medicine ,Anatomy ,Skin Transplantation ,Plastic Surgery Procedures ,Lip ,Surgical Flaps ,Surgery ,Treatment Outcome ,Lip Neoplasms ,Medicine ,Humans ,business ,Follow-Up Studies - Published
- 2010
25. Use of a swim goggle for corneal protection
- Author
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Steven Chow and Richard G. Bennett
- Subjects
Aged, 80 and over ,Male ,Postoperative Care ,medicine.medical_specialty ,business.industry ,Eyelids ,Dermatology ,General Medicine ,Eyelid Neoplasms ,Cornea ,medicine.anatomical_structure ,Carcinoma, Basal Cell ,Ophthalmology ,medicine ,Humans ,Surgery ,business ,Eye Protective Devices - Published
- 2009
26. Contributors
- Author
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David R. Adams, April W. Armstrong, Kimberly Bohjanen, Katy Burris, David F. Butler, Melvin W. Chiu, Steven Chow, Jonathan Cotliar, Richard Devillez, David Doyle, Lisa C. Edsall, Dirk M. Elston, Laura Korb Ferris, Robin P. Gehris, Robert T. Gilson, Whitney A. High, Jenny C. Hu, Maria Yadira Hurley, Sharon E. Jacob, Juan P. Jaimes, Jonette E. Keri, Christine J. Ko, Eve J. Lowenstein, Jared Lund, Donald Miech, Linda S. Nield, Julia R. Nunley, Geeta K. Patel, Arturo P. Saavedra, Papri Sarkar, Elizabeth Satter, Brooke N. Shadel, Christopher B. Skvarka, James E. Sligh, Stefani Takahashi, Donna Marie Vleugels, Oliver J. Wisco, and Clarissa Yang
- Published
- 2009
- Full Text
- View/download PDF
27. Granuloma faciale
- Author
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Steven Chow and Kimberly Bohjanen
- Published
- 2009
- Full Text
- View/download PDF
28. Sunitinib: A Cause of Bullous Palmoplantar Erythrodysesthesia, Periungual Erythema, and Mucositis
- Author
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Steven Chow, Erin M. Warshaw, Brian C Berg, and Pitiporn Suwattee
- Subjects
medicine.medical_specialty ,Erythema ,business.industry ,Sunitinib ,Treatment outcome ,Follow up studies ,Dermatology ,General Medicine ,medicine.disease ,Multikinase inhibitor ,Mucositis ,Medicine ,Mucous inflammation ,medicine.symptom ,business ,medicine.drug - Published
- 2008
- Full Text
- View/download PDF
29. Total skin electron beam therapy with or without adjuvant topical nitrogen mustard or nitrogen mustard alone as initial treatment of T2 and T3 mycosis fungoides
- Author
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Daniel M. Chinn, Youn H. Kim, Richard T. Hoppe, and Steven Chow
- Subjects
Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Skin Neoplasms ,medicine.medical_treatment ,Administration, Topical ,Salvage therapy ,Gastroenterology ,chemistry.chemical_compound ,Mycosis Fungoides ,Internal medicine ,Cause of Death ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Mechlorethamine ,Antineoplastic Agents, Alkylating ,Survival analysis ,Aged ,Neoplasm Staging ,Retrospective Studies ,Aged, 80 and over ,Salvage Therapy ,Chemotherapy ,Mycosis fungoides ,Radiation ,business.industry ,Remission Induction ,Retrospective cohort study ,Middle Aged ,medicine.disease ,Survival Analysis ,Nitrogen mustard ,Surgery ,Radiation therapy ,Oncology ,chemistry ,Chemotherapy, Adjuvant ,Female ,business ,Adjuvant ,Follow-Up Studies - Abstract
To compare the efficacy of total skin electron beam therapy (TSEBT) with or without adjuvant topical nitrogen mustard (+/- HN2) with topical nitrogen mustard (HN2) alone as initial management of T2 and T3 mycosis fungoides (MF).A retrospective analysis of 148 patients presenting to Stanford from January, 1970 through January, 1995 within 4 months of pathologic diagnosis of MF. Fifty-five patients with T2 and 27 with T3 disease received TSEBT +/- HN2. Fifty-four patients with T2 and 12 with T3 disease received HN2 alone. Boosts with radiotherapy were usually administered to cutaneous tumors of patients with T3 disease.TSEBT +/- HN2 yielded significantly higher complete response (CR) rates than did HN2 alone in patients with T2 and T3 disease (76% vs 39%, p = 0.03 for T2, and 44% vs 8%, p0.05 for T3, respectively). In T2 disease, treatment with adjuvant HN2 was associated with a longer freedom from relapse following TSEBT when compared to observation following a CR to TSEBT (p = 0.068). However, no significant differences in survival were observed for different management programs for T2 or T3 disease. In T2 disease, both TSEBT and HN2 were as effective as salvage therapy as when utilized as initial therapy. However, salvage therapy in T3 disease was rarely effective. Limited tumor involvement in T3 disease did not correlate with improved survival compared to more generalized tumorous disease. MF contributed to 27% and 68% of deaths in patients with T2 and T3 disease, respectively.Because of high response rates, management of significantly symptomatic or extensive T2 MF should include TSEBT, and adjuvant HN2 should be administered after a CR to TSEBT. Patients with T2 disease who fail TSEBT or HN2 can be salvaged with the other modality. TSEBT is also an effective treatment for T3 disease. The small subset of patients with limited T3 disease may also be treated with HN2 and local radiotherapy to the tumors. Further investigations are necessary to improve the overall outcome for T3 mycosis fungoides.
- Published
- 1999
30. Politicians must heed health effects of climate change
- Author
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Lim, Victor, primary, Stubbs, Joseph W, additional, Nahar, Nazmun, additional, Amarasena, Naomali, additional, Chaudry, Zafar Ullah, additional, Weng, Steven Chow Kim, additional, Mayosi, Bongani, additional, van der Spuy, Zephne, additional, Liang, Raymond, additional, Lai, Kar Neng, additional, Metz, Geoffrey, additional, Fitzgerald, G William N, additional, Williams, Brian, additional, Douglas, Neil, additional, Donohoe, John, additional, Darnchaivijir, Somwang, additional, Coker, Patrick, additional, and Gilmore, Ian, additional
- Published
- 2009
- Full Text
- View/download PDF
31. Politicians must heed health effects of climate change
- Author
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John Donohoe, Nazmun Nahar, Joseph W Stubbs, Bongani M. Mayosi, Kar Neng Lai, Brian Williams, Patrick Coker, Zephne van der Spuy, Naomali Amarasena, Somwang Darnchaivijir, Victor Lim, Geoffrey Metz, G William N Fitzgerald, Zafar Ullah Chaudry, Neil Douglas, Ian Gilmore, Steven Chow Kim Weng, and Raymond Liang
- Subjects
Political economy of climate change ,General Engineering ,Climate change ,General Medicine ,Politics ,Effects of global warming ,Environmental protection ,Political economy ,Political science ,Immediacy ,Development economics ,Global health ,General Earth and Planetary Sciences ,Greenhouse effect ,General Environmental Science - Abstract
The report on climate change and health commissioned by University College London and the Lancet concludes: “Climate change is the biggest global health threat of the 21st century.”1 In this report, the authors emphasise not only the immediacy and gravity of this threat but also the directness: while the poorest in the world will be …
- Published
- 2009
- Full Text
- View/download PDF
32. Towards a global synthesis of Collembola knowledge – challenges and potential solutions
- Author
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Anton Potapov, Bruno Bellini, Steven Chown, Louis Deharveng, Frans Janssens, Ľubomír Kováč, Natalia Kuznetsova, Jean-François Ponge, Mikhail Potapov, Pascal Querner, David Russell, Xin Sun, Feng Zhang, and Matty Berg
- Subjects
springtails ,taxonomy ,macroecology ,#GlobalCollembola ,functional traits ,Microbiology ,QR1-502 ,Zoology ,QL1-991 - Abstract
Collembola are among the most abundant and diverse soil microarthropods, which are found in almost all (semi)terrestrial environments and often serve as model organisms in empirical studies. Diverse data collected on the biology and ecology of Collembola over the last century are waiting for synthesis studies, while developing technologies may facilitate generation of new knowledge. Collembola research in 2020 is entering the stage of global synthesis and in this opinion paper we address the main challenges that the community of collembologists is facing on this avenue. We first discuss the present status and social context of Collembola taxonomy and the potential use of novel technologies to describe new species. We then focus on aspects of community ecology, reviewing the processes of dispersal, environmental and biotic filtering, from the spatial scale of microhabitat to the globe. We also discuss the involvement of Collembola in ecosystem processes and which proxies, such as functional traits, can be used to predict the functional roles of species. Finally, we provide recommendations on how we can improve community data collection by using standard methods and better data handling practices. We call for (1) integrating morphological descriptions with high-resolution photographs and genetic barcodes for species descriptions and developing of user friendly software and machine learning approaches to facilitate deposition of structured taxonomic knowledge on web platforms; (2) multiscale studies on biodiversity distribution and community processes, especially including dispersal mechanisms; (3) recording and sharing functional, not only morphological, trait data in controlled experiments and field surveys; (4) knowledge synthesis and meta-analysis studies on the topics of ecosystem roles of Collembola, conservation of its diversity, feeding behaviour, protection mechanisms and dispersal of different Collembola species, and effects of land use and climate change on collembolan communities; (5) joint efforts in covering the gaps in Collembola knowledge, especially in underexplored regions (predominantly tropics and subtropics) using standard methodologies; (6) data sharing and its integration in open structured databases. We believe that Collembola studies could make use of new technologies and ongoing changes in society. To facilitate the progress across these research topics by 2040, we have established #GlobalCollembola, a distributed-effort community-driven initiative that aims to provide open and global data on Collembola taxonomic and genetic diversity, abundance, traits and literature and to coordinate global efforts in covering the key knowledge gaps.
- Published
- 2020
- Full Text
- View/download PDF
33. Threats of Statutory Tenure on Customary Land in Zambia: Evidence from Chamuka Chiefdom in Chisamba District
- Author
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Anthony Mushinge, Alex Mumbaala Simposya, and Steven Chowa
- Subjects
Displacement ,Dual land governance ,Customary land ,Land tenure ,State land ,Tenure security ,Mathematical geography. Cartography ,GA1-1776 ,Land use ,HD101-1395.5 - Abstract
This chapter investigated threats of statutory tenure on customary land. The study was primarily qualitative in nature and adopted a case study approach. Using evidence from Chamuka Chiefdom in Chisamba District, Central Province, the paper concludes that there are various threats of statutory tenure on customary land. These include traditional leaders losing control over land, displacements, land disputes, investors acquire more land than what is demarcated to them by traditional leaders, traditional leaders’ not consulting their community members, corruption, and tenure insecurity. To resolve these challenges, some villages have been enumerated and mapped using the Social Tenure Domain Model. STDM is aimed at providing Customary Land Holding Certificates. However, certificates issued through the Social Tenure Domain Model are not recognised by the land laws in Zambia. In view of the foregoing, the government and traditional leaders’ should ensure that legal reforms are undertaken (for certificates issued through STDM to be recognised by the land laws); traditional leaders are equipped with knowledge and skills in land management; and zero tolerance to corruption.
- Published
- 2020
- Full Text
- View/download PDF
34. Total skin electron beam therapy (TSEBT) +/− adjuvant topical nitrogen mustard (HN2) or HN2 alone as initial treatment of T2- T3 mycosis fungoides (MF)
- Author
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Steven Chow, Daniel M. Chinn, Richard T. Hoppe, and Youn H. Kim
- Subjects
Cancer Research ,Mycosis fungoides ,medicine.medical_specialty ,Radiation ,business.industry ,medicine.medical_treatment ,medicine.disease ,Dermatology ,Nitrogen mustard ,Total skin electron beam therapy ,chemistry.chemical_compound ,Oncology ,chemistry ,medicine ,Initial treatment ,Radiology, Nuclear Medicine and imaging ,business ,Adjuvant - Published
- 1998
- Full Text
- View/download PDF
35. Prevalence of Albuminuria and Cardiovascular Risk Profile in a Referred Cohort of Patients with Type 2 Diabetes: An Asian Perspective.
- Author
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C.Y. Pan, L.T. Ho, S. Soegondo, W. Prodjosudjadi, S. Suwanwalaikorn, S.C. Lim, T.M. Chan, K.W. Steven Chow, M. Thoenes, and D.S. Choi
- Published
- 2008
36. Updated list of Collembola species currently recorded from South Africa
- Author
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Charlene Janion–Scheepers, Louis Deharveng, Anne Bedos, and Steven Chown
- Subjects
Zoology ,QL1-991 - Abstract
Understanding the abundance and richness of species is one of the most fundamental steps in effecting their conservation. Despite global recognition of the significance of the below-ground component of diversity for ecosystem functioning, the soil remains a poorly studied terrestrial ecosystem. In South Africa, knowledge is increasing for a variety of soil faunal groups, but many still remain poorly understood. We have started to address this gap in the knowledge of South African soil biodiversity by focusing on the Collembola in an integrated project that encompasses systematics, barcoding and ecological assessments. Here we provide an updated list of the Collembola species from South Africa. A total of 124 species from 61 genera and 17 families has been recorded, of which 75 are considered endemic, 24 widespread, and 25 introduced. This total number of species excludes the 36 species we consider to be dubious. From the published data, Collembola species richness is high compared to other African countries, but low compared to European countries. This is largely a consequence of poor sampling in the African region, as our discovery of many new species in South Africa demonstrates. Our analyses also show that much ongoing work will be required before a reasonably comprehensive and spatially explicit picture of South Africa’s springtail fauna can be provided, which may well exceed 1000 species. Such work will be necessary to help South Africa meet its commitments to biodiversity conservation, especially in the context of the 2020 Aichi targets of the Convention on Biological Diversity.
- Published
- 2015
- Full Text
- View/download PDF
37. Springtail diversity in South Africa
- Author
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Charlene Janion, Anne Bedos, Jan Bengtsson, Louis Deharveng, Bettine Jansen van Vuuren, Hans Petter Leinaas, Amy Liu, Anna Malmström, David Porco, and Steven Chown
- Subjects
Collembola ,fynbos ,decomposition ,invasive species ,barcoding ,Science ,Science (General) ,Q1-390 ,Social Sciences ,Social sciences (General) ,H1-99 - Abstract
Despite their significance in soil ecosystems and their use for investigations of soil ecosystem functioning and in bioindication elsewhere, springtails (Collembola) have not been well investigated in South Africa. Early recognition of their role in soil systems and sporadic systematic work has essentially characterised knowledge of the southern African fauna for some time. The situation is now changing as a consequence of systematic and ecological work on springtails. To date this research has focused mostly on the Cape Floristic Region and has revealed a much more diverse springtail fauna than previously known (136 identifiable species and an estimated 300 species for the Cape Floristic Region in total), including radiations in genera such as the isotomid Cryptopygus. Quantitative ecological work has shown that alpha diversity can be estimated readily and that the group may be useful for demonstrating land use impacts on soil biodiversity. Moreover, this ecological work has revealed that some disturbed sites, such as those dominated by Galenia africana, may be dominated by invasive springtail species. Investigation of the soil fauna involved in decomposition in Renosterveld and Fynbos has also revealed that biological decomposition has likely been underestimated in these vegetation types, and that the role of fire as the presumed predominant source of nutrient return to the soil may have to be re-examined. Ongoing research on the springtails will provide the information necessary for understanding and conserving soils: one of southern Africa's major natural assets.
- Published
- 2011
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