Search

Tidal wetlands are expected to respond dynamically to global environmental change, but the extent to which wetland losses have been offset by gains remains poorly understood. We developed a global analysis of satellite data to simultaneously monitor change in three highly interconnected intertidal ecosystem types—tidal flats, tidal marshes, and mangroves—from 1999 to 2019. Globally, 13,700 square kilometers of tidal wetlands have been lost, but these have been substantially offset by gains of 9700 km 2 , leading to a net change of −4000 km 2 over two decades. We found that 27% of these losses and gains were associated with direct human activities such as conversion to agriculture and restoration of lost wetlands. All other changes were attributed to indirect drivers, including the effects of coastal processes and climate change.

Rural, tropical coastal communities are experiencing sustained, often increasing food insecurity, poverty, and global change impacts. These challenges have stimulated a rise in projects aiming to enhance and diversify local livelihoods. The ability of these projects to achieve broad-scale benefits is limited by approaches that do not account for feedbacks among sectors and across marine and terrestrial environments. To address these limitations, we present an applied research agenda to support an integrated approach to livelihood project planning and management. This agenda explicitly examines interactions among natural resources, industries, and livelihoods and is based on three foundational activities: (1) a governance review and assessment, (2) strategic partnership formation, and (3) a diagnostic approach supported by science and shared outcomes. We add structure to the established logic in our field by broadening the sectoral and spatial scope of livelihoods projects, so they can better contribute to interrelated UN Sustainable Development Goals.

Bioturbation of reef sediments aerates the upper sediment layers and releases organic material to benthic communities. Despite being the larger and more conspicuous bioturbators on coral reefs, the value of holothurians (sea cucumbers) to reef ecosystems is less often attributed to their ecosystem services than their value for fisheries. This may be because they are considered to have an insignificant effect on reef health relative to other animals. Here, we ground-truthed remote sensing data obtained from drone and satellite imagery to estimate the bioturbation rates of holothurians across the 19 km2 Heron Island Reef in Queensland, Australia. Ex situ bioturbation rates of the most abundant holothurian, Holothuria atra, were assessed during 24-h feeding experiments. Using density measurements of holothurians across reef flat zones in a 27,000 m2 map produced from drone imagery, we extrapolated bioturbation across the reef using satellite remote sensing data. Individual H. atra were estimated to produce approximately 14 kg of bioturbated sediment per year. On a reef scale (excluding the reef lagoon) and accounting for varying densities of holothurians across different reef zones, total bioturbation from holothurians at Heron Reef was estimated at over 64,000 metric tonnes per year, slightly more than the mass of five Eiffel Towers. These results highlight the scale of structural and biochemical impacts that holothurians have on reef flats and their importance to ecosystem functioning and services. Management of these animals on reefs is imperative as overharvesting would likely cause substantial negative effects on sedimentary ecosystems and their biogeochemistry in corals reefs.

Sediments are ubiquitous on coral reefs. However, studies of reef sediments have largely focused on isolated reservoirs, or processes, and rarely consider hydrodynamic drivers. We therefore provide a quantitative snapshot of sediment dynamics on a coral reef. Across a depth profile, we simultaneously examined: suspended sediments, sediment deposition and accumulation, and hydrodynamic and biological movement processes. We reveal the marked potential for the water column to deliver sediments. Currents carried 12.6 t of sediment over the 2,314 m

There is increasing evidence that non-reef habitats in the seascape surrounding coral reefs are widely used by reef-associated fishes. However, our understanding of seascape use in the Indo-Pacific region is incomplete due to its large geographical range and as a consequence, considerable environmental variation (e.g. tidal regimes). We used remote video cameras to survey reef-associated fishes within five habitat types (coral reef slope, coral reef flat, macroalgal beds, mangroves and seagrass meadows) around the Tigak Islands, Kavieng, Papua New Guinea. Of the 282 shallow-water reef-associated species observed across 360 videos, 35% (99 species) were recorded in non-reef habitats, the majority (78 species) on multiple occasions. We found that macroalgal beds dominated by low-complexity algal genera (e.g. Halimeda, Caulerpa) were used extensively by reef-associated fishes, complementing previous research that has documented the use of canopy-forming macroalgae (e.g. Sargassum). Mean species richness and relative abundances (MaxN) of reef-associated fishes were twofold higher in macroalgal beds than mangroves or seagrass. Interestingly, mangroves contained the most distinct fish assemblage of the three non-reef habitats, including several reef-associated species that were not recorded from any other habitat type. This suggests that mangroves possess attributes not shared by other shallow non-reef, or even reef, habitats. Importantly, many of the fish families commonly found in non-reef habitats (i.e. lethrinids, lutjanids) are targeted by local fishers and are thus critical to sustaining local livelihoods. Our study demonstrates that non-reef habitat use is common for many reef-associated fishes and highlights the need to incorporate a range of habitats into study designs to better understand habitat use patterns in the Indo-Pacific. Given the widespread degradation of coral reefs and other shallow-water habitats, we emphasize the need to recognize that reefs are embedded within a mosaic of habitat types that influence patterns and processes and that management strategies should be scaled appropriately.

Legislation to ban the targeted fishing of sharks is frequently employed within developing coastal nations. These Shark Large Marine Protected Areas (SLMPAs) are established primarily to alleviate the direct threats that humans pose to sharks through activities such as overfishing and destructive fishing practices. However, despite the anthropogenic nature of these threats, socioeconomic factors are often given less consideration than their ecological counterparts when designating SLMPAs. In this paper, we identified and examined relevant national-level socioeconomic data to determine the challenges and opportunities associated with implementing SLMPAs, focussing on least developed and low income countries. We aimed to use these socioeconomic data to identify nations where SLMPAs are more likely to be successful in providing conservation benefits to sharks. We used principal component analysis to develop two national-level indices that represent these anticipated opportunities and challenges for implementing SLMPAs across 87 coastal nations. The Opportunity Index identifies those nations in which socioeconomic conditions such as adaptive capacity, and strong and fair governance, are favourable for SLMPAs to provide conservation benefits to sharks. The Challenge Index identifies those nations that may not yet be in a position developmentally to support communities to adapt to a loss of access to resources associated with SLMPAs, or to manage and enforce broad scale restrictive legislation. In combination with biophysical considerations, the Challenge and Opportunity indices presented here can support policy makers in deciding whether, and in what cases, SLMPAs are the most appropriate measure to provide conservation benefits to sharks.

Rubble islands are dynamic sedimentary features present on reef platforms that evolve under a variety of morphodynamic processes and controlling mechanisms. They provide valuable inhabitable land for small island nations, critical habitat for numerous species, and are threatened by climate change. Aiming to investigate the controlling mechanisms dictating the evolution of One Tree Island (OTI), a rubble island in the Southern Great Barrier Reef, we combined different remotely-sensed data across varying timescales with wave data extracted from satellite altimetry and cyclone activity. Our findings show that (1) OTI had expanded by 7% between 1978 and 2019, (2) significant gross planform decadal adjustments were governed by the amount, intensity, proximity, and relative position of cyclones as well as El Niño Southern Oscillation (ENSO) phases, and (3) the mechanisms of island growth involve rubble spits delivering and redistributing rubble to the island through alongshore sediment transport and wave overtopping. Frequent short-term monitoring of the island and further research coupling variations in the different factors driving island change (i.e., sediment availability, reef-wave interactions, and extreme events) are needed to shed light on the future trajectory of OTI and other rubble islands under a climate change scenario.

Coral reefs are widely recognized as effective dissipaters of wave energy. Spurs and grooves (SAG) are common features of fore reefs worldwide and are thought to be particularly efficient at dissip...

Many factors govern reef growth through time, but their relative contributions are commonly poorly known. A prime example is the degree to which modern reef morphology is controlled by contemporary hydrodynamic settings or antecedent topography. Fortunately, reefs record essential information for interpreting palaeoclimate and palaeoenvironment within their structure as they accrete in response to environmental change. Five new cores recovered from the margin of Heron Reef, southern Great Barrier Reef (GBR), provide new insights into Holocene reef development and relationships between Holocene reefs and Pleistocene antecedent topography, suggesting much more irregular underlying topography than expected based on the configuration of the overlying modern reef margin. Cores were recovered to depths of 30 m and 94 new 230Th ages document growth between 8408 ± 24 and 2222 ± 16 yrs. BP. One core penetrated Pleistocene basement at ∼15.3 m with Holocene reef growth initiated by ∼8.4 ka BP. However, 1.83 km west along the same smooth margin, four cores failed to penetrate Pleistocene basement at depths between 20 and 30 m, suggesting that the margin at this location overlies a karst valley, or alternatively, the antecedent platform does not extend there. A 48 m-long margin-perpendicular transect of three cores documents the filling of this topographic low, at least 30 m beneath the current reef top, with seaward lateral accretion at a rate of 34.3 m/ka. Cores indicate steady vertical and lateral accretion between 3.2 and 1.8 ka BP with no evidence of the hiatus in reef flat progradation seen in most other offshore reefs of the GBR at that time. These cores suggest that the relative protection afforded by the valley allowed for unconsolidated sediment to accumulate, enabling continuous progradation even when other areas of the reef flat appear to have ‘turned off’. Additionally, the cores suggest that although reefs in the southern GBR clearly owe their location to Pleistocene antecedent topography, modern reef morphology at sea level primarily reflects the interaction of Holocene reef communities with contemporary hydrodynamics.

Carbonate production on coral reefs is responsible for the provision of beach sands, for the maintenance of seawater chemical balances and for the growth of reef structure and associated habitat complexity. Key carbonate producers including hard coral, crustose coralline algae, foraminiferal sand and Halimeda were mapped from satellite imagery (spatial resolution 2.5 m, mean overall accuracy = 81%) and an upscaling model was applied to estimate carbonate production. A sensitivity analysis was conducted to evaluate the influence of employing different calcification rates for live coral on the upscaling model. Contemporary coral reef carbonate production for the 21 reef platforms of the Capricorn-Bunker Group (southern Great Barrier Reef) is estimated to be between 489,000 and 659,000 t per year based on seawater chemistry, community composition, calcification rates and reef structural complexity (rugosity). The upscaling model was relatively insensitive to different parameterisations of live coral calcification employed, probably due to live coral being a relatively minor contributor by area (approximately 18% of total reef area throughout the study region). This suggests regional scale seafloor characteristics, such as percentage of area dominated by substrates prone to dissolution (e.g. coral rubble), have a strong bearing on calcium carbonate production and need to be given greater consideration The upscaling framework presented provides a new method for quantifying regional carbonate production that could be applied globally, and provides a valuable baseline against which future changes to carbonate production in this region can be assessed.

Reef response to Last Interglacial (LIG) sea level and palaeoenvironmental change has been well documented at a limited number of far-field sites remote from former ice sheets. However, the age and development of LIG reefs in the Great Barrier Reef (GBR) remain poorly understood due to their location beneath modern living reefs. Here we report thirty-nine new mass spectrometry U-Th ages from seven LIG platform reefs across the northern, central and southern GBR. Two distinct geochemical populations of corals were observed, displaying activity ratios consistent with either closed or open system evolution. Our closed-system ages (~ 129–126 ka) provide the first reliable LIG ages for the entire GBR. Combined with our open-system model ages, we are able to constrain the interval of significant LIG reef growth in the southern GBR to between ~ 129–121 ka. Using age-elevation data in conjunction with newly defined coralgal assemblages and sedimentary facies analysis we have defined three distinct phases of LIG reef development in response to major sea level and oceanographic changes. These phases include: Phase 1 (> 129 ka), a shallow-water coralgal colonisation phase following initial flooding of the older, likely Marine Isotope Stage 7 (MIS7) antecedent platform; Phase 2 (~ 129 ka), a near drowning event in response to rapid sea level rise and greater nutrient-rich upwelling and; Phase 3 (~ 128–121 ka), establishment of significant reef framework through catch-up reef growth, initially characterised by deeper, more turbid coralgal assemblages (Phase 3a) that transition to shallow-water assemblages following sea level stabilisation (Phase 3b). Coralgal assemblage analysis indicates that the palaeoenvironments during initial reef growth phases (1 and 2) of the LIG were significantly different than the initial reef growth phases in the Holocene. However, the similar composition of ultimate shallow-water coralgal assemblages and slow reef accretion rates following stabilisation of sea level (phase 3b) suggest that reefs of both ages developed in a similar way during the main phase of relatively stable sea level.

Sea cucumbers (Holothuroidea or holothurians) are a valuable fishery and are also crucial nutrient recyclers, bioturbation agents, and hosts for many biotic associates. Their ecological impacts could be substantial given their high abundance in some reef locations and thus monitoring their populations and spatial distribution is of research interest. Traditional in situ surveys are laborious and only cover small areas but drones offer an opportunity to scale observations more broadly, especially if the holothurians can be automatically detected in drone imagery using deep learning algorithms. We adapted the object detection algorithm YOLOv3 to detect holothurians from drone imagery at Hideaway Bay, Queensland, Australia. We successfully detected 11,462 of 12,956 individuals over 2.7ha with an average density of 0.5 individual/m2 . We tested a range of hyperparameters to determine the optimal detector performance and achieved 0.855 mAP, 0.82 precision, 0.83 recall, and 0.82 F1 score. We found as few as ten labelled drone images was sufficient to train an acceptable detection model (0.799 mAP). Our results illustrate the potential of using small, affordable drones with direct implementation of open-source object detection models to survey holothurians and other shallow water sessile species.

Measurements of geomorphic change in the intertidal zones of coral reefs are made using a variety of remote sensing and in-situ techniques, where variations in the coverage and spatial-temporal precision achieved are directly related to the cost of data acquisition. We present a novel, low-cost technique for measuring high-resolution changes in reef environments based on Kite Aerial Photography (KAP) and photogrammetry/structure-from-motion post-processing. KAP images are used to measure fine-scale changes in intertidal topography and sediment texture characteristics, including rubble particle size, of a coral shingle cay at One Tree Island, Great Barrier Reef in the context of storm activity. Validation using Real Time Kinematic DGPS demonstrates the ability to measure topographic elevation with an error of 5.53 cm (RMSE) and a spatial resolution of 5 cm per point, an accuracy/resolution that is superior to airborne LiDAR and equivalent to terrestrial LiDAR, but at a fraction of the equipment cost.

Spurs and grooves (SaGs) are a common and important feature of coral reef fore slopes worldwide. However, they are difficult to access and hence their morphodynamics and formation are poorly understood. We use remote sensing, with extensive ground truthing, to measure SaG morphometrics and environmental factors at 11,430 grooves across 17 reefs in the southern Great Barrier Reef, Australia. We revealed strong positive correlations between groove length, orientation and wave exposure with longer, more closely-spaced grooves oriented easterly reflecting the dominant swell regime. Wave exposure was found to be the most important factor controlling SaG distribution and morphology. Gradient of the upper reef slope was also an important limiting factor, with SaGs less likely to develop in steeply sloping (> 5°) areas. We used a subset of the morphometric data (11 reefs) to statistically define four classes of SaG. This classification scheme was tested on the remaining six reefs. SaGs in the four classes differ in morphology, groove substrate and coral cover. These differences provide insights into SaG formation mechanisms with implications to reef platform growth and evolution. We hypothesize SaG formation is dominated by coral growth processes at two classes and erosion processes at one class. A fourth class may represent relic features formed earlier in the Holocene transgression. The classes are comparable with SaGs elsewhere, suggesting the classification could be applied globally with the addition of new classes if necessary. While further research is required, we show remotely sensed SaG morphometrics can provide useful insights into reef platform evolution.

Linking surficial sediment patterns in reef environments to the processes that underlie their depositional dynamics enables predictions to be made of how environmental changes will influence reef-associated sedimentary landforms, such as islands and beaches. Geomorphic linkages between sediment deposition patterns and the biophysical processes that drive them are often poorly resolved, particularly at broad landscape scales where tangible statements can be made about structural changes to landforms. The present study applies geospatial techniques to link patterns in reef sediment dynamics at Lady Musgrave Island to the underlying processes driving them. In situ calcification is characterized by developing a high resolution map of the surficial calcium carbonate producing communities inhabiting the reef platform, and associated sediments across the reef flat are analysed for grain size, kurtosis, sorting and threshold bed shear stress to explore transport pathways across the reef flat and lagoon. Wave energy is modelled across the entire reef platform as a potential driver of sediment dynamics, and morphometric linkages are empirically defined between wave energy and grain size. Findings indicate that carbonate sediments are primarily sourced from calcifying communities colonizing the outer periphery of the reef platform and that sediment grain size can be reliably linked to wave energy by virtue of a linear model.

The response of platform reefs to sea-level stabilization over the past 6 ka is well established for the Great Barrier Reef (GBR), with reefs typically accreting laterally from windward to leeward. However, these observations are based on few cores spread across reef zones and may not accurately reflect a reef's true accretional response to the Holocene stillstand. We present a new record of reef accretion based on 49 U/Th ages from Heron and One Tree reefs in conjunction with re-analyzed data from 14 reefs across the GBR. We demonstrate that hydrodynamic energy is the main driver of accretional direction; exposed reefs accreted primarily lagoon-ward while protected reefs accreted seawards, contrary to the traditional growth model in the GBR. Lateral accretion rates varied from 86.3 m/ka–42.4 m/ka on the exposed One Tree windward reef and 68.35 m/ka–15.7 m/ka on the protected leeward Heron reef, suggesting that wind/wave energy is not a dominant control on lateral accretion rates. This represents the most comprehensive statement of lateral accretion direction and rates from the mid-outer platform reefs of the GBR, confirming great variability in reef flat growth both within and between reef margins over the last 6 ka, and highlighting the need for closely-spaced transects.

Marine Protected Areas (MPAs) have the potential to support small-scale fishers in managing their resources. However, a general failure to consider the varying levels of vulnerability of fishers has resulted in MPAs that, often unintentionally, adversely impact small-scale fishers. Furthermore, when fishers lack the capacity to adapt to MPA-related changes, MPAs may fail to meet conservation objectives because fishers do not comply with MPA regulations. In this study, we developed a systematic method to identify individuals who are most vulnerable to being negatively impacted by no-take MPAs through an index that represents individual-level vulnerability. We designed a method for identifying these individuals based on four socioeconomic factors pertaining to vulnerability to MPA changes: livelihood diversity, education, age and wealth, then applied this method in two socially and economically heterogeneous communities in Myanmar's Myeik Archipelago. We used empirical data collected from 80 small-scale fishers in this area to represent each factor, then generated a local-level ‘Livelihood Impact Potential Index’ (LIPI) that reflects the degree to which a no-take MPA would impact an individual fisher's ability to support his or her livelihood. When attributed to each fisher's most frequented fishing ground, the LIPI can identify locations where no-take MPAs would be most detrimental to small-scale fishers' livelihoods based on their levels of vulnerability. The LIPI can thus be used alongside ecological and commercial fishing data to support planners in designing local-scale MPAs that maximise positive impact on biodiversity and minimise adverse impacts on the most vulnerable fishers in a community.

Contemporary understanding of Holocene coral reef development is based primarily on sub-surface investigations of reef flat, back reef and lagoon zones. Few studies of Holocene fore reef development exist, constituting a significant gap in our understanding of reef evolution. The spur and groove (SaG) zone is a distinct, understudied, feature of fore reefs worldwide. We review SaG development from previous studies and present 29 new SaG short cores with 52 14C and U–Th ages from six fore reef regions of Heron and One Tree reefs, the first such data from the Great Barrier Reef. Remarkably, we found that SaGs do not necessarily accrete in the same direction as their adjacent reef flat. We identified three modes of reef flat and SaG lateral accretion: Mode 1 – lagoonward accretion of both the reef flat and SaGs; Mode 2 –lagoonward accretion of the reef flat but seaward accretion of the SaGs; Mode 3 - seaward accretion of both the reef flat and SaGs. Most SaG zones (five of the six studied) accreted in a seaward direction (Modes 2 or 3). Hydrodynamic conditions and local topography appear to be the dominant factors determining which mode occurs. Episodic high-energy events are also likely to play an important role in SaG formation. Our findings suggest that traditionally held models of reef evolution whereby lagoonal, mature reefs fill, developing into senile platform reefs, may not hold. Rather, reef flats may continue to expand seaward on their leeward, and semi-exposed fronts to increase in size while maintaining their lagoons.

Duce, S., Vila-Concejo, A., Hamylton, S., Bruce, E., Webster, J. M, 2014. Spur and groove distribution, morphology and relationship to relative wave exposure, Southern Great Barrier Reef, Australia. In: Green, A.N. and Cooper, J.A.G. (eds.), Proceedings 13 th International Coastal Symposium (Durban, South Africa), Journal of Coastal Research, Special Issue No. 70, pp. 115-120, ISSN 0749-0208. Spur and groove features occur on the seaward reef slope of coral reefs around the world. They are believed to act as important natural breakwaters, regulating the hydrodynamic energy and nutrients received by reef platforms. They also represent one of the most diverse and productive zones of modern reefs. However, the formation processes and morphodynamics of spur and groove systems are poorly understood, particularly in the Great Barrier Reef (GBR). This paper constitutes the first broad scale analysis of spur and groove systems in the Capricorn Bunker Group (CBG) in the southern GBR. It uses remotely sensed imagery coupled with ground-truthed data to measure groove length at four reefs (Wreck, Heron, One Tree and Lady Elliot). A total of 2621 grooves were digitised across the four study reefs. Groove length was found to vary both between and within the study reefs. The maximum groove length was 536 m. Average groove length ranged from 93 m at Wreck Reef to 32 m at Heron Reef. This data was compared to relative wave exposure estimates derived from the fetch scenario at each reef. Strong positive correlation was found with groove length increasing as wave exposure increased. Groove length was highly spatially dependant and varied around the reef platforms according to the degree of wave exposure. The longest grooves were found on the most exposed, eastern sides of all reefs. These results provide valuable insight into spur and groove function, formation and likely response to future environmental changes in the CBG and further afield.

With almost limitless applications across marine and freshwater environments, the number of people using, and wanting to use, remotely piloted aircraft systems (or drones) is increasing exponentially. However, successfully using drones for data collection and mapping is often preceded by hours of researching drone capabilities and functionality followed by numerous limited-success flights as users tailor their approach to data collection through trial and error. Working over water can be particularly complex and the published research using drones rarely documents the methodology and practical information in sufficient detail to allow others, with little remote pilot experience, to replicate them or to learn from their mistakes. This can be frustrating and expensive, particularly when working in remote locations where the window of access is small. The aim of this paper is to provide a practical guide to drone-based data acquisition considerations. We hope to minimise the amount of trial and error required to obtain high-quality, map-ready data by outlining the principles and practice of data collection using drones, particularly in marine and freshwater environments. Importantly, our recommendations are grounded in remote sensing and photogrammetry theory so that the data collected are appropriate for making measurements and conducting quantitative data analysis.

The water–energy–food nexus is being promoted as a conceptual tool for achieving sustainable development. Frameworks for implementing nexus thinking, however, have failed to explicitly or adequately incorporate sustainable livelihoods perspectives. This is counterintuitive given that livelihoods are key to achieving sustainable development. In this paper we present a critical review of nexus approaches and identify potential linkages with sustainable livelihoods theory and practice, to deepen our understanding of the interrelated dynamics between human populations and the natural environment. Building upon this review, we explore the concept of ‘environmental livelihood security’ – which encompasses a balance between natural resource supply and human demand on the environment to promote sustainability – and develop an integrated nexus-livelihoods framework for examining the environmental livelihood security of a system. The outcome is an integrated framework with the capacity to measure and monitor environmental livelihood security of whole systems by accounting for the water, energy and food requisites for livelihoods at multiple spatial scales and institutional levels. We anticipate this holistic approach will not only provide a significant contribution to achieving national and regional sustainable development targets, but will also be effective for promoting equity amongst individuals and communities in local and global development agendas.

This document addresses the need for explicit inclusion of livelihoods within the environment nexus (water-energy-food security), not only responding to literature gaps but also addressing emerging dialogue from existing nexus consortia. We present the first conceptualization of ‘environmental livelihood security’, which combines the nexus perspective with sustainable livelihoods. The geographical focus of this paper is Southeast Asia and Oceania, a region currently wrought by the impacts of a changing climate. Climate change is the primary external forcing mechanism on the environmental livelihood security of communities in Southeast Asia and Oceania which, therefore, forms the applied crux of this paper. Finally, we provide a primer for using geospatial information to develop a spatial framework to enable geographical assessment of environmental livelihood security across the region. We conclude by linking the value of this research to ongoing sustainable development discussions, and for influencing policy agendas