125 results on '"Stefan Ekman"'
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2. Bacidia genuensis B. de Lesd. resurrected
- Author
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Stefan Ekman
- Subjects
bacidia ,bacidina ,crustose lichens ,italy ,lecanorales ,ramalinaceae ,toniniopsis ,Botany ,QK1-989 - Abstract
The species described as Bacidia genuensis is transferred here to Bacidina as B. genuensis ( Ramalinaceae , Lecanorales , lichenized Ascomycota ). An updated morphological description is provided. The species is characterized by mostly blackish apothecia on a thick, microsquamulose thallus, a crystal-inspersed proper exciple that is mostly prosoplechtenchymatous, an ascus with a wide and dome-shaped axial body and an expanded c-layer (resulting in a thin, amyloid d-layer), a blue-green pigment in the epihymenium, proper exciple, and pycnidial wall, and an orange-brown, K+ intensifying pigment in the hypothecium and sometimes proper exciple. This combination of characters sets the species apart from its potentially close relatives Bacidina egenula and B. indigen s, as well as the superficially similar, but more distantly related, Toniniopsis bagliettoana . Bacidina genuensis is currently known from a few sites in northern Italy, where it inhabits weathered and apparently shaded mortar of masonry.
- Published
- 2023
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3. A tribute to Professor Tor Tønsberg
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Martin Kukwa, Stefan Ekman, Christian Printzen, Adam Flakus, and Jolanta Miadlikowska
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Botany ,QK1-989 - Published
- 2023
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4. Vitruvius, Critics, and the Architecture of Worlds
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Stefan Ekman
- Subjects
Literature (General) ,PN1-6790 - Published
- 2019
5. Biatora alnetorum (Ramalinaceae, Lecanorales), a new lichen species from western North America
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Stefan Ekman and Tor Tønsberg
- Subjects
Botany ,QK1-989 - Abstract
Biatora alnetorum S. Ekman & Tønsberg, a lichenised ascomycete in the family Ramalinaceae (Lecanorales, Lecanoromycetes), is described as new to science. It is distinct from other species of Biatora in the combination of mainly three-septate ascospores, a crustose thallus forming distinctly delimited soralia that develop by disintegration of convex pustules and the production of atranorin in the thallus and apothecia. The species is known from the Pacific Northwest of North America, where it inhabits the smooth bark of Alnus alnobetula subsp. sinuata and A. rubra. Biatora alnetorum is also a new host for the lichenicolous ascomycete Sclerococcum toensbergii Diederich.
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- 2019
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6. Urban fantasy — literatura Niewidocznego
- Author
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Stefan Ekman
- Subjects
urban fantasy ,suburban fantasy ,the unseen ,dark fantasy ,paranormal romance ,Literature (General) ,PN1-6790 - Abstract
This article analyses the nature of urban fantasy by aggregating the claims, suggestions, and observations made by several different accounts of what urban fantasy is. These accounts comprise six scholarly sources and four sources written by people who are producers and purveyors of urban fantasy. An eleventh “account” is made up of the impressions conveyed by a vast number of book covers identified through Google Image Search. These eleven accounts are analysed with regard to their views on worlds and settings, cities and urbanity, central characters, and the sources of fantastic elements. Finally, the article presents how three major threads in the accounts reveal that urban fantasy has a central, thematic concern with the Unseen. This Unseen is largely related to a social Other that portrays unpleasant aspects of urban life, such as criminality, homelessness, addiction, prostitution, and physical and sexual abuse.
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- 2018
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7. Carina Burman, Bellman. Biografin (Stockholm: Bonniers, 2019). 751 pp.
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Stefan Ekman
- Subjects
Modern history, 1453- ,D204-475 - Published
- 2020
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8. Literatura Niewidocznego — wizje i rewizje urban fantasy
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Stefan Ekman, Audrey Taylor, Sylwia Borowska-Szerszun, Krzysztof M. Maj, and Barbara Szymczak-Maciejczyk
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urban fantasy ,paranormal romance ,genology ,genre theory ,Literature (General) ,PN1-6790 - Abstract
A discussion Literature of the Unseen—Visions and (Re)visions of Urban Fantasy collects theoretical reflections upon the subgenres of urban fantasy and paranormal romance, along with a brief commentary on the body of text representative for both conventions. Participants include „Creatio Fantastica” editors—Sylwia Borowska-Szerszun, Krzysztof M. Maj, and Barbara Szymczak-Maciejczyk—as well as renowned experts in the field of fantasy studies: Stefan Ekman, author of the first monograph of fantasy map-making, Here Be Dragons. Exploring Fantasy Maps & Settings (2013), and Audrey Taylor, author of Patricia A. McKillip and the Art of Fantasy World-building (2017).
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- 2018
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9. Taxonomic novelties and new records of Fennoscandian crustose lichens
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Måns Svensson, Stefan Ekman, Jon T. Klepsland, Anders Nordin, Göran Thor, Gesa von Hirschheydt, Fredrik Jonsson, Tommy Knutsson, Mattias Lif, Toby Spribille, and Martin Westberg
- Subjects
Botany ,QK1-989 - Abstract
We present taxonomic, distributional and ecological notes on Fennoscandian crustose lichens and lichenicolous fungi, based on new collections as well as revision of herbarium material. Two new combinations are proposed: Frutidella furfuracea comb. nov. for F. pullata and Puttea duplex comb. nov. for Fellhanera duplex. Lecidea byssoboliza, L. carneoglauca and Variolaria torta are all reduced to synonymy with Bacidia antricola, Bacidia invertens is synonymized with B. igniarii, B. atrolivida with Mycobilimbia tetramera, and Gyalidea fruticola with Thelenella pertusariella. A new description is provided for Micarea hylocomii. 25 species of lichens and lichenicolous fungi are reported as new to Finland, Norway and/or Sweden: Absconditella lignicola (Norway), Bacidia antricola (Norway), B. polychroa (Norway), B. pycnidata (Sweden), Bacidina adastra (Sweden), Biatora veteranorum (Norway), Briancoppinsia cytospora (Finland), Catillaria scotinodes (Norway), Cliostomum subtenerum (Norway), Dirina fallax (Sweden), Fellhaneropsis almquistiorum (Norway), Gyalidea subscutellaris (Sweden), Lecania inundata (Norway), L. suavis (Norway), Micarea capitata (Norway), M. deminuta (Norway), M. hylocomii (Sweden), M. lynceola (Sweden), M. soralifera (Sweden), M. subconfusa (Sweden), Mycoblastus sanguinarioides (Finland, Sweden), Paralecia pratorum (Sweden), Puttea duplex (Sweden), Sarcogyne algoviae (Finland) and Toninia subnitida (Norway). Lectotypes are designated for Bacidia antricola, Lecidea byssoboliza, Lecidea carneoglauca, Lecidea subconfusa and Lecidea submoestula.
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- 2017
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10. Title Page
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Stefan Ekman
- Published
- 2013
11. Cover
- Author
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Stefan Ekman
- Published
- 2013
12. 4 : Nature and Culture
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Stefan Ekman
- Published
- 2013
13. 3 : Borders and Boundaries
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Stefan Ekman
- Published
- 2013
14. Acknowledgments
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Stefan Ekman
- Published
- 2013
15. 2 : Maps
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Stefan Ekman
- Published
- 2013
16. 1 : Introduction
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Stefan Ekman
- Published
- 2013
17. Notes
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Stefan Ekman
- Published
- 2013
18. Appendix A: Method for the Map Survey
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Stefan Ekman
- Published
- 2013
19. Appendix B: Map Sample
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Stefan Ekman
- Published
- 2013
20. About the Author
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Stefan Ekman
- Published
- 2013
21. 6 : Some Final Thoughts
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Stefan Ekman
- Published
- 2013
22. Index
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Stefan Ekman
- Published
- 2013
23. 5 : Realms and Rulers
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Stefan Ekman
- Published
- 2013
24. Bibliography
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Stefan Ekman
- Published
- 2013
25. Notes Toward a Critical Approach to Worlds and World-Building
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Stefan Ekman and Audrey Isabel Taylor
- Subjects
imaginary worlds ,world-building ,secondary worlds ,fantasy ,topofocal analysis ,Literature (General) ,PN1-6790 - Abstract
Imaginary worlds and how they are constructed are central to fiction. The term world-building, however, has been applied so broadly in scholarship that it has become ambiguous and difficult to use in critical discussions. Aiming to contribute to greater clarity in the critical use of the term, this article introduces the concept of critical world-building. This is distinguished from other types of world-building, such as that performed by an author or reader, mainly by the fact that a critic analyses a world through a combination of their sequential presentation, as complete world, and with critical interpretation and theoretical filters in place, applying all three perspectives simultaneously. Two possible approaches to critical world-building are presented, based on the functions of a world’s building-blocks and how to interpret those functions. The first approach focuses on a world’s “architecture” – its structural and aesthetic system of places – and the form, function, and meaning of those places. The second emphasises the dynamic interplay between building-blocks and their interconnections in a web of explicit, implied, and interpreted information about the world. The authors base their discussion on textual, secondary fantasy worlds but invite applications of critical world-building to other genres and media.
- Published
- 2016
26. Tilda Maria Forselius, God dag, min läsare!: bland berättare, brevskrivare, boktryckare och andra bidragsgivare i tidig svensk veckopress 1730–1773. Eureka. Ellerströms akademiska nr. 42 (Lund: Ellerström, 2015). 327 s.
- Author
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Stefan Ekman
- Subjects
Modern history, 1453- ,D204-475 - Published
- 2017
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27. Kunskapens vägar: Nordiskt 1700-talssymposium i Göteborg 2006: Call for Papers
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Birgitta Berglund-Nilsson, Maria Cavallin, Stefan Ekman, and Kenneth Nyberg
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Modern history, 1453- ,D204-475 - Published
- 2014
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28. Platsen som inte finns
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Stefan Ekman
- Subjects
Fantasy ,Settings ,J.R.R. Tolkien ,Charles de Lint ,Robert Holdstock ,Language and Literature - Abstract
A Non-Existent Place: The Importance of Fantasy Settings In fantasy literature, the setting is as important to the story as are character and plot. This article demonstrates how topofocal (place-focused) perspectives yield valuable insights into various fantasy texts. The examples include discussions on how the nature/culture relationship is tied to the ideological centre in Charles de Lint’s Newford stories; how a careful examination of Sauron’s land in J.R.R. Tolkien’s The Lord of the Rings reveals how the text views the nature of evil; and how the structure of the land develops along with the stories in the Mythago Wood novels by Robert Holdstock. In a genre where there are no limits to the shape a setting can take, the central question must be: Why is it shaped the way it is?
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- 2012
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29. Tillfällesdikt och politik i Dagligt Allehanda 1770
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Stefan Ekman
- Subjects
Occasional poetry ,newspapers ,mediation ,remediation ,decorum ,public spheres ,Language and Literature - Abstract
Occasional Poetry and Politics in Dagligt Allehanda 1770 This article discusses three different examples of occasional poems that deviate from the traditional function and form of the genre. In the late 1760s, Sweden saw the launch of its first daily newspaper, Dagligt Allehanda [The Daily Variety]. During the ensuing decades the content of the newspapers differed from that of today: a large number of poems were included, on average one per day. Traditionally, occasional poetry had a socially preserving function, as it described and reflected ceremonies in the Swedish society of four estates. But the end of the Age of Liberty was a turbulent time in Sweden, socially and politically. The Freedom of Speech Act was passed in 1766 and the periodical press soon became a forum for political discussions in print. It also facilitated a new public sphere, a commoner’s sphere where occasional poetry was employed as a political tool to celebrate people outside the nobility as well as members of other socially and economically successful groups. These new groups required different tropes and virtues; in short, laudation based on a different principles of decorum. The poems and discussions included in this article form examples of how political ideas were introduced into occasional poetry and how the notion of decorum changed when the daily newspapers were used as a public sphere to reach a new and broader audience for the poems.
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- 2012
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30. Evolution of growth habit, inflorescence architecture, flower size, and fruit type in Rubiaceae: its ecological and evolutionary implications.
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Sylvain G Razafimandimbison, Stefan Ekman, Timothy D McDowell, and Birgitta Bremer
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Medicine ,Science - Abstract
During angiosperm evolution, innovations in vegetative and reproductive organs have resulted in tremendous morphological diversity, which has played a crucial role in the ecological success of flowering plants. Morindeae (Rubiaceae) display considerable diversity in growth form, inflorescence architecture, flower size, and fruit type. Lianescent habit, head inflorescence, small flower, and multiple fruit are the predominant states, but arborescent habit, non-headed inflorescence, large flower, and simple fruit states occur in various genera. This makes Morindeae an ideal model for exploring the evolutionary appearances and transitions between the states of these characters. We reconstructed ancestral states for these four traits using a bayesian approach and combined nuclear/chloroplast data for 61 Morindeae species. The aim was to test three hypotheses: 1) self-supporting habit is generally ancestral in clades comprising both lianescent and arborescent species; 2) changes from lianescent to arborescent habit are uncommon due to "a high degree of specialization and developmental burden"; 3) head inflorescences and multiple fruits in Morindeae evolved from non-headed inflorescences and simple fruits, respectively. Lianescent habit, head inflorescence, large flower, and multiple fruit are inferred for Morindeae, making arborescent habit, non-headed inflorescence, small flower, and simple fruit derived within the tribe. The rate of change from lianescent to arborescent habit is much higher than the reverse change. Therefore, evolutionary changes between lianescent and arborescent forms can be reversible, and their frequency and trends vary between groups. Moreover, these changes are partly attributed to a scarcity of host trees for climbing plants in more open habitats. Changes from large to small flowers might have been driven by shifts to pollinators with progressively shorter proboscis, which are associated with shifts in breeding systems towards dioecy. A single origin of dioecy from hermaphroditism is supported. Finally, we report evolutionary changes from headed to non-headed inflorescences and multiple to simple fruits.
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- 2012
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31. Four new and two resurrected species of Bacidina from Sweden, with notes and a preliminary key to the known Scandinavian species
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Stefan Ekman
- Subjects
Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
32. Reflecting On And Refracting User Needs Through Case Studies In The Light Of Europeana Research.
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Agiatis Benardou, Alastair Dunning, Stefan Ekman, Vicky Garnett, Caspar Jordan, Ilze Lace, and Eliza Papaki
- Published
- 2016
33. Book reviews
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Kevin M. McGeough and Stefan Ekman
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Visual Arts and Performing Arts ,Communication - Published
- 2020
34. A Literary Excursion Into the Hidden (Fan) Fictional Worlds of Tetris, Starcraft, and Dreamfall.
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Jana Rambusch, Tarja Susi, Stefan Ekman, and Ulf Wilhelmsson
- Published
- 2009
35. Tree-Dependent Lichens and Beetles as Indicators in Conservation Forests
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Sven G. Nilsson, Stefan Ekman, Ulf Arup, and Rickard Baranowski
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Geography ,Ecology ,biology ,Rare species ,Forestry ,biology.organism_classification ,Lichen ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,Lobaria pulmonaria - Abstract
We tested whether the conspicuous lichen Lobaria pulmonaria indicates the number of tree-dependent, red-listed species in a hemiboreal forest in southern Sweden. In 18 naturally regenerated, mainly old deciduous forest plots considered to be of high or very high conservation value, the number of red-listed tree lichens or wood beetles was not positively correlated with the area of the forest stands studied (8–56 ha). The 8 stands with L. pulmonaria had about nine (median) red-listed lichens, but 10 stands without L. pulmonaria had only about one such species, a highly significant difference. Similarly, the variation between stands in the number of red-listed wood beetles was considerable, but it was very weakly correlated with the number of red-listed lichens. The number of red-listed wood beetles dependent on dead trees was not different in areas with or without Lobaria pulmonaria, but the number of red-listed wood beetles dependent on hollow trees was higher in stands with Lobaria pulmonaria (median of seven species) than in those without (three species) the lichen. Stands with this lichen species also contained significantly more of other types of lichens that have been proposed as indicators of forest continuity according to three lists. We stress the need for identification of species that could serve as indicators of different types of forest continuity and identify some organism groups that may indicate the different types. Los liquenes y coleopteros dependientes de arboles como indicadores en los bosques bajo conservacion Resumen: Evaluamos si el consipicuo liquen Lobaria pulmonaria indica el numero de especies dependientes de los arboles, listadas en el libro rojo en un area de bosque hemi-boreal en el sur de Suecia. El numero de liquenes de los arboles o coleopteros de la madera listados en el libro rojo no estuvo positivamente correlacionado con el area de los rodales de bosque estudiados (8–56 ha), en 18 rodales naturalemente regenerados, en su mayoria de antiguo crecimiento de bosques deciduos; los cuales se considera tienen de alto a muy alto valor de conservacion. Los 8 rodales con L. pulmonaria tuvieron alrededor de nueve (mediana) liquenes listados en el libro rojo, pero 10 rodales sin L. pulmonaria tuvieron solamente una de dichas especies, una diferencia significativamente alta. Asi mismo, la variacion entre rodales en el numero de coleopteros listados en el libro rojo fue considerable, pero estuvo debilmente correlacionada con el numero de liquenes listados en el libro rojo. El numero de coleopteros de la madera listados en el libro rojo, dependientes de arboles muertos no fue diferente en areas con o sin Lobaria pulmonaria. Sin embargo, el numero de coleopteros de la madera listados en el libro rojo dependientes de troncos huecos fue mas alto en rodales con Lobaria pulmonaria (mediana = siete especies) que en aquellos sin el mencionado liquen (tres epecies). Los rodales con este liquen tambien contuvieron significativamente un numero mayor de otros liquenes que han sido propuestos como indicadores de la continuidad del bosque de acuerdo a tres listas. Remarcamos la necesidad de la identificacion de especies que pueden servir como indicadoras de los diferentes tipos de continuidad del bosque y la identificacion de ciertos grupos de organismos que pueden indicar los diferentes tipos.
- Published
- 2021
36. Towards an integrative taxonomy ofPhyllopsora(Ramalinaceae)
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Einar Timdal, Jesús Hernández, Stefan Ekman, Marcela Eugenia da Silva Cáceres, Sonja Kistenich, and Mika Bendiksby
- Subjects
0106 biological sciences ,0301 basic medicine ,Ramalinaceae ,biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Thallus ,03 medical and health sciences ,030104 developmental biology ,Herbarium ,Molecular phylogenetics ,Botany ,Biological dispersal ,Taxonomy (biology) ,Crustose ,Lichen ,Ecology, Evolution, Behavior and Systematics - Abstract
Species identification in the tropical lichen genusPhyllopsorais generally challenging and is based on ascospore morphology, vegetative dispersal units, thallus structure and secondary chemistry. As several type specimens are in poor condition and difficult to interpret, it is often unclear how these old names fit with the currently used taxonomy. In the present study, we aim to identify species boundaries inPhyllopsoras. str. supported by an integrative approach using multiple sources of evidence. We investigated a substantial amount of herbarium as well as freshly collected material and generated mtSSU and ITS sequence data from most of the described species, including several types. Species delimitation analyses are applied on the gene trees using mPTP and we construct a species tree of both markers with *BEAST, facilitating discussion of species delimitation and sister-relationships. Comparing morphology, chemistry and molecular data, we found that the mPTP analyses split established species repeatedly. Based on our integrative results, we exclude nine species from the genus, resurrect one (P. melanoglaucaZahlbr.), reduce two into synonymy with otherPhyllopsoraspecies and describe five as new to science:Phyllopsora amazonicaKistenich & Timdal (which shares the secondary chemistry (atranorin and terpenoid pattern) withP. haleichemotype 1, but differs, e.g., in having smaller areolae that are attached to a thinner, white prothallus, and in having more persistently marginate and less convex apothecia),Phyllopsora concinnaKistenich & Timdal (which shares the secondary chemistry (atranorin and parvifoliellin) withP. parvifoliellaandP. rappiana, but differs from both in forming larger isidia, having a white prothallus, apothecial margin paler than the disc, and longer and broader ascospores),Phyllopsora furfurellaKistenich & Timdal (which is here segregated fromP. furfuraceabased on having a white prothallus and in containing skyrin in the hypothecium (K+ red)),Phyllopsora isidosaKistenich & Timdal (which differs fromP. byssisedain forming a more crustose thallus with more delicate isidia, and fromP. isidiotylain forming somewhat coarser, less branched isidia) andPhyllopsora neotinicaKistenich & Timdal (a neotropical species here segregated from the now exclusively paleotropicalP. chodatinica, differing in containing an unknown xanthone (not chodatin)). Lectotypes are designated forBiatora pyrrhomelaenaTuck.,Lecidea leucophyllinaNyl.,L. pertextaNyl., andP. brachysporaMüll. Arg. In total, we accept 54 species in the genusPhyllopsora.
- Published
- 2019
37. Urban Fantasy : Exploring Modernity Through Magic
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Stefan Ekman and Stefan Ekman
- Abstract
Urban fantasy, the genre of fantastic literature in which magic and monsters meet modern society, is fairly young but has old roots. Stefan Ekman's book, Urban Fantasy: Exploring Modernity through Magic, examines the genre in depth, including its inherent social commentary, its historical development, and its interplay between modernity and the fantastic. The author draws on a wide range of urban fantasy texts from five decades, combining detailed analysis of dozens of novels and other media with broad discussions to provide a comprehensive understanding of the genre across three sections. The first section presents an overview of what the genre looks like today—both in terms of its common traits and its variety of settings—and how it has developed over time, including the history of urban fantasy scholarship. The second section examines urban fantasy's core concern with the unseen, for example through a focus on unseen individuals overlooked by society or hiding within it, and on ignored urban spaces or labyrinthine undergrounds. The third section addresses how urban fantasy explores the relationship between the supernatural and modernity. Ekman offers readings of fiction by Ben Aaronovitch, Lauren Beukes, P. Djelí Clark, Charles de Lint, Neil Gaiman, Max Gladstone, Kim Harrison, N.K. Jemisin, and Megan Lindholm, among others. Urban Fantasy will appeal to teachers and students of the fantastic as well as to urban fantasy enthusiasts and literary scholars. Ekman illuminates the genre's evolution and defining traits, inviting readers to rethink urban fantasy as a creative tool for using magic to explore modernity.
- Published
- 2024
38. Coreomyces (Laboulbeniales) in Sweden, with two new species
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Stefan Ekman, Johannes Bergsten, Åsa Kruys, and Henrik Sundberg
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Systematics ,Biologisk systematik ,Ascomycota ,Ecology ,Evolution ,Laboulbeniales ,Zoology ,Corixidae ,Plant Science ,Biological Systematics ,Biology ,biology.organism_classification ,Behavior and Systematics ,Botany ,Taxonomy (biology) ,Coreomyces ,Ecology, Evolution, Behavior and Systematics - Abstract
The genus Coreomyces (Laboulbeniaceae, Laboulbeniomycetes, Ascomycota) includes minute parasites on water boatmen (Corixidae, Hemiptera, Insecta). This taxonomic study is primarily based on freshly sampled corixids infected by Coreomyces from Sweden, although a few samples from Denmark and Turkey were also included. All records were verified using DNA sequence data from the internal transcribed spacer region and large subunit of the nuclear ribosomal DNA repeat region. We recognise four species, two of which are new to science: Coreomyces confusus H. Sundb. et al. sp. nov., C. corixae Thaxt., C. dextrorsus H. Sundb. et al. sp. nov. and C. macropus Thaxt. Coreomyces corixae is new to Denmark, Sweden and Turkey, while C. macropus is new to Denmark and Sweden. Coreomyces confusus is morphologically very similar to C. macropus and also occupies the same positions on the same host species, although it seems to be less common. Coreomyces dextrorsus resembles C. corixae morphologically but is usually considerably larger. It infects the same host species as C. corixae and also shares one of its positions on the host with C. corixae, although it is much more common in its species-specific position. All four species can inhabit two different yet distinct positions on the host. We observe that morphology is affected by the position on the host and that different species sharing the same position on the host tend to be difficult or impossible to separate on morphology only. We conclude that species circumscriptions in Coreomyces must be based on the integration of molecular and morphological data.
- Published
- 2021
39. Three overlooked species of Bacidia from insular Laurimacaronesia
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Tor Tønsberg, Pieter P. G. van den Boom, and Stefan Ekman
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Malmideaceae ,Ramalinaceae ,biology ,Botany ,Plant Science ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Abstract
We discuss the taxonomy of three species of Bacidia occurring in insular Laurimacaronesia. Two of them, B. amylothelia (Vain.) Vain. and B. endoleucoides (Nyl.) Zahlbr., which were previously described from Angola and Madeira, respectively, are found here to belong in Bacidia s. str. (Ramalinaceae). Modern descriptions and illustrations are provided for the first time. Bacidia amylothelia is similar to B. areolata Gerasimova & A. Beck, B. campalea (Tuck.) S. Ekman & Kalb, B. fusconigrescens (Nyl.) Zahlbr., B. heteroloma (Vain.) Zahlbr., B. millegrana (Taylor) Zahlbr. and B. suffusa (Fr.) A. Schneid. and is reported here from the Canary Islands. Bacidia endoleucoides is most likely to be confused with B. absistens (Nyl.) Arnold, B. friesiana (Hepp) Körb., B. salazarensis B. de Lesd. and B. caesiovirens S. Ekman & Holien and was found to be widely distributed in the Canary Islands and Azores in addition to Madeira. The third species, Bacidia deludens S. Ekman, Tønsberg & van den Boom, is described here as new to science. Bacidia deludens is characterised by a greyish, crustose thallus with whitish soralia, pale apothecia with crystals in the hymenium and proper exciple, acicular ascospores with 3–19 septa, and the production of fumarprotocetraric acid as the consistently present major substance. It is described here from the Canary Islands and Madeira. Although conservatively treated here in Bacidia, we argue that it is likely to belong in the Malmideaceae. An identification key to all known species of Bacidia s. str. in insular Macaronesia is provided. publishedVersion
- Published
- 2021
40. Phylogeny and character evolution in the Dacrymycetes, and systematics of Unilacrymaceae and Dacryonaemataceae fam. nov
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Stefan Ekman and Juan Carlos Zamora
- Subjects
Systematics ,Character evolution ,Biologisk systematik ,Evolution ,Dacrymycetes ,Biological Systematics ,030308 mycology & parasitology ,Coalescent theory ,03 medical and health sciences ,Behavior and Systematics ,Unilacryma ,Phylogenetics ,Supermatrix ,Ecology, Evolution, Behavior and Systematics ,0303 health sciences ,Ecology ,biology ,Phylogenetic tree ,Dacrymyces ,Dacryonaema ,biology.organism_classification ,Carotenoids ,species delimitations ,Evolutionary biology ,coalescence analyses ,cytology - Abstract
We present a multilocus phylogeny of the class Dacrymycetes, based on data from the 18S, ITS, 28S, RPB1, RPB2, TEF-1α, 12S, and ATP6 DNA regions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the Dacrymycetes, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class Dacrymycetes discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (Cerinomycetaceae, Dacrymycetaceae, and Unilacrymaceae), and one is proposed as the new family Dacryonaemataceae. Provisionally, only a single order, Dacrymycetales, is accepted with in the class. Furthermore, the systematics of the two smallest families, Dacryonaemataceae and Unilacrymaceae, are investigated to the species level, using coalescence-based species delimitation on multilocus DNA data, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in Dacryonaema, the type, Da. rufum, the newly combined Da. macnabbii (basionym Dacrymyces macnabbii), and a new species named Da. macrosporum. Two species are accepted in Unilacryma, the new U. bispora, and the type, U. unispora, the latter treated in a broad sense pending improved sampling across the Holarctic.
- Published
- 2020
41. Entering a Fantasy World through Its Map
- Author
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Stefan Ekman
- Subjects
Cultural Studies ,Literature and Literary Theory ,media_common.quotation_subject ,Reading (process) ,Fantasy ,Art ,Visual arts ,media_common - Abstract
This essay demonstrates how we can gain critical insights into a fantasy world by reading its accompanying map, using Ben McSweeney’s map from Brandon Sanderson’s The Rithmatist as an example. An a...
- Published
- 2018
42. Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- Author
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Harry Andersson, Annemieke Verbeken, László Nagy, E. S. Popov, L. B. Kalinina, Robert W. Barreto, Philippe Clerc, Alice Cruz Lima da Gerlach, Martin Grube, Xingzhong Liu, Jan Holec, Leticia Pacheco, Ursula Eberhardt, Blanca Imelda Arguello Sosa, Sigvard Svensson, Dania García Sánchez, Dmitry Ageev, Julia Pawłowska, Dennis E. Desjardin, Sara R. Noumeur, James C. Lendemer, Martin Kukwa, Viktor Papp, Isabel Salcedo, Maria Martha Dios, Richard W. Kerrigan, Reinhard Agerer, Jean-Michel Bellanger, Curtis R. Björk, Uwe Braun, François Valade, Víctor J. Rico, Ondřej Koukol, Ingvar Kärnefelt, Barbara Schulz, Attila Koszka, Gro Gulden, E. F. Malysheva, P. Brandon Matheny, Anton Shiryaev, Gerardo Mata, Mehdi Mehrabi, Taiga Kasuya, Tor Tønsberg, Ivana Kušan, Sergey Volobuev, Hans-Otto Baral, Esteri Ohenoja, Martin Kirchmair, Holger Thüs, Marian Jagers, Tuomo Niemelä, Begoña Aguirre-Hudson, J. Jennifer Luangsa-ard, Måns Svensson, Geir Mathiassen, Anna Rosling, Roy Watling, Meiriele da Silva, Eske De Crop, Ursula Peintner, Claudio Angelini, Mascha Hoffmeister, Vincent Demoulin, Miguel Ángel Ribes Ripoll, Paul Diederich, Takayuki Aoki, Nicolás Niveiro, Jiří Kout, Asunción Morte, Damien Ertz, Peter R. Johnston, Sergio P. Gorjón, Huzefa A. Raja, Machiel E. Noordeloos, Stellan Sunhede, László Lőkös, Cécile Gueidan, Gérald Gruhn, Bart Buyck, Roy E. Halling, Thomas Læssøe, Neven Matočec, Dan Mahoney, David Boertmann, Carlos G. Boluda, Vera Evenson, Ferenc Pál-Fám, Martin Westberg, Katriina Bendiksen, Jukka Vauras, Jacques Fournier, Martina Réblová, Gabriel Moreno, Yuri K. Novozhilov, Aída M. Vasco-Palacios, Leif Tibell, Deborah Jean Lodge, Miquel À. Pérez-De-Gregorio Capella, Rafael F. Castañeda-Ruiz, Olinto Liparini Pereira, Karl-Henrik Larsson, Michael Loizides, Edit Farkas, Mika Bendiksby, Tanja Böhning, Kadri Pärtel, Lucia Muggia, Brigitte Capoen, Raphaël Herve, Paul S. Dyer, Alberto Altés García, João Luís Baptista-Ferreira, Bella Grishkan, Paul Pirot, Karl Soop, Anna Bérešová-Guttová, Donald H. Pfister, A. Martyn Ainsworth, Uwe Lindemann, Alain Favre, Elisandro Ricardo Drechsler-Santos, André De Kesel, Mónica A.G. Otálora, Klaus Høiland, Ellen Larsson, Jens H. Petersen, Meike Piepenbring, Florent Boittin, James K. Mitchell, Zdeněk Palice, Franck Richard, Masoomeh Ghobad-Nejhad, Nils Hallenberg, Henry J. Beker, Gilles Corriol, Ronald H. Petersen, Melissa Palacio, Ana Esperanza Franco Molano, Mikael Jeppson, Gerardo Lucio Robledo, Egil Bendiksen, V. M. Kotkova, Håkon Holien, Marjo Dam, Pier Luigi Nimis, Yasmina Marin-Felix, Fernando Esteve-Raventós, Ave Suija, André Aptroot, Frank Dämmrich, Mitko Karadelev, Karen W. Hughes, Gladstone Alves da Silva, Emanuele Campo, Reinhard Berndt, Alona Yu. Biketova, Anders Nordin, Juan Manuel Velasco Santos, Josef Hafellner, Marco Thines, Bálint Dima, Grit Walther, Rodham E. Tulloss, Michael J. Richardson, Thomas W. Kuyper, Vladimír Kunca, Ann Bell, Adrien Taudière, Marc Stadler, Tania Raymundo, Per Vetlesen, Guillermo Muñoz González, Seppo Huhtinen, Irmgard Greilhuber, Øyvind Weholt, María Prieto Álvaro, Teun Boekhout, Dagmar Triebel, Mikhail P. Zhurbenko, Elena Voronina, Zdenko Tkalčec, Christian Lechat, Krzysztof Świerkosz, Joaquina María García-Martín, Johannes Z. Groenewald, Rubén Martínez-Gil, Pierre-Arthur Moreau, Evi Weber, Jan Borovička, Anna G. Fedosova, A Fraiture, Ewald Langer, Olga Morozova, Günter Saar, Carlos Lado, Vicent Calatayud, Juan Carlos Zamora, Ibai Olariaga, Francesco Bellù, Paolo Franchi, AnnaElise Jansen, Simón Fos, Matthias Lutz, Veera Tuovinen, István Nagy, Boris Assyov, J. Vladimir Sandoval-Sierra, Andrei Tsurykau, Alfredo Vizzini, Ivona Kautmanová, Mario Filippa, Beatrice Senn-Irlet, Sigisfredo Garnica, Josiane Santana Monteiro, Luis A. Parra, Svengunnar Ryman, Alan M. Fryday, Stip Helleman, Pedro W. Crous, Ruben De Lange, Alexander Ordynets, Giuliana Furci, Guilhermina Marques, Håkan Lindström, Joost A. Stalpers, Luis Quijada, Carlos A. Salvador Montoya, Marina Temina, Ruvishika S. Jayawardena, Miguel Ulloa Sosa, Joseph F. Ammirati, Heikki Kotiranta, Andreas Frisch, Martin Kříž, Teuvo Ahti, Tommy Knutsson, Tatyana Yu. Svetasheva, Luis Rubio Casas, Maria Alice Neves, Arne Thell, Soili Stenroos, Lajos Benedek, Sten Svantesson, Tine Grebenc, Patrícia Oliveira Fiuza, Tor Erik Brandrud, Flávia Rodrigues Barbosa, Annarosa Bernicchia, T. K. Arun Kumar, Massimo Candusso, Menno W. Boomsluiter, Wolfgang von Brackel, Petr Zehnálek, Hana Ševčíková, Toby Spribille, Vit Hubka, Trond Schumacher, Olivier Raspé, Tatiana Baptista Gibertoni, Esteve Llop, Åsa Kruys, Christoffer Bugge Harder, Klaus Siepe, Arne Aronsen, Andrew N. Miller, Laura Noemí Levin, Edgardo Albertó, Israel Pérez-Vargas, Hermann Voglmayr, Genevieve Gates, Bárbara De Madrignac Bonzi, Pradeep K. Divakar, Franz Berger, Natalia A. Ramírez, Per M. Jørgensen, Roland Moberg, Guy Marson, Gábor M. Kovács, Gérard Trichies, Sergio M. Salcedo Martínez, Juan Pablo Esquivel, Lynn Delgat, Juan de Dios Reyes García, Heidi Tamm, Vera Malysheva, Jan-Olof Tedebrand, Thomas Stjernegaard Jeppesen, Nico Dam, Régis Courtecuisse, Ireneia Melo, Pablo P. Daniëls, Péter Finy, Pamela Rodriguez-Flakus, Brian A. Perry, Brian Douglas, Ana M. Millanes Romero, Hans Josef Schroers, Pieter P. G. van den Boom, Slavomír Adamčík, Serena Lee, Marek Halama, Carlos Urcelay, Margarita Hernández-Restrepo, Philippe Callac, Oleg N. Shchepin, Vladimír Antonín, Gintaras Kantvilas, Else C. Vellinga, Ditte Bandini, Gernot Friebes, Roland Kirschner, Dániel G. Knapp, Boris Ivančević, Orlando Fabian Popoff, Clovis Douanla-Meli, Marcin Piątek, Alica Košuthová, Yury A. Rebriev, Helmut Mayrhofer, Alain Gardiennet, Karen Hansen, Kerry Knudsen, Otto Miettinen, Raquel Pino-Bodas, Shaun R. Pennycook, Beatriz Ortiz-Santana, Tatiana Bulyonkova, Jie Chen, Thomas Edison E. dela Cruz, Miroslav Kolařík, Witoon Purahong, Nicolas Van Vooren, Irwin M. Brodo, Esteban Benjamin Sir, Katerina Rusevska, Gerhard Rambold, Christian Printzen, Tim Baroni, Gary Laursen, Csaba Locsmándi, Javier Angel Etayo Salazar, Cristina Rodriguez-Caycedo, Irja Saar, Nadezhda V. Psurtseva, Takashi Shirouzu, Chayanard Phukhamsakda, Adam Flakus, Viacheslav Spirin, Sergi Santamaria, Matteo Garbelotto, Alan Orange, Mats Wedin, Andrew S. Methven, Huang Zhang, Guillaume Eyssartier, Michel Hairaud, Hatira Taskin, Luís Fernando Pascholati Gusmão, Carlos Manuel Pérez del Amo, Martin Bemmann, Ana Rosa Burgaz, Linas Kudzma, Didier Argaud, M. Catherine Aime, Alain Henriot, Walter M. Jaklitsch, Raúl Tena Lahoz, Violeta Atienza, Jorinde Nuytinck, Anna Kiyashko, Patinjareveettil Manimohan, József Geml, Cathy L. Cripps, Viktor Kučera, Francisco Kuhar, Kanad Das, Michael A. Castellano, Giovanni Consiglio, Ana Crespo, Armin Mešić, Leena Myllys, Einar Timdal, Ricardo Valenzuela Garza, Harold H. Burdsall, Enrico Bizio, Mohammad Sohrabi, Eugene Yurchenko, Linda Davies, Jacob Heilmann-Clausen, Patrice Lainé, Matteo Domenico Carbone, Aurelia Paz, Joaquim Carbó, Henning Knudsen, Thorsten Lumbsch, Caroline Hobart, Göran Thor, Bita Asgari, Matthias Lüderitz, Sanja Tibell, Ulf Arup, Geert Schmidt-Stohn, Urmas Kõljalg, Stefan Ekman, Regulo Carlos Llarena Hernandez, László Albert, Santiago Sánchez-Ramírez, Sergio Pérez-Ortega, Anna Ronikier, Isaac Garrido Benavent, Ricardo Galán Márquez, Westerdijk Fungal Biodiversity Institute, Westerdijk Fungal Biodiversity Institute - Yeast Research, Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology, Uppsala University, National Central University, Universidad Rey Juan Carlos [Madrid] (URJC), Avenida Padre Claret 7, Partenaires INRAE, Naturalis Biodiversity Center [Leiden], Evolutionary Biology Centre, Slovak Academy of Sciences (SAS), Finnish Museum of Natural History (LUOMUS), University of Helsinki, Purdue University, Royal Botanic Gardens, Hungarian Mycological Society, Universidad Nacional de San Martin (UNSAM), Universidad de Alcalá - University of Alcalá (UAH), SIGNATEC Ltd., Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), University of Washington [Seattle], Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Moravian Museum, National Agriculture and Food Research Organization (NARO), ABL Herbarium, Auteur indépendant, Instituto Tecnológico de Ciudad Victoria, Torødveien 54, Lund University [Lund], Agricultural Research,Education and Extension Organization (ARREO), Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences (BAS), Universitat Politècnica de València (UPV), Panoramastr 47, Universidade de Lisboa (ULISBOA), Blaihofstr. 42, State University of New York (SUNY), Universidade Federal de Vicosa (UFV), Royal Holloway, University of London, Meise Botanic Garden, 45 Gurney Road, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud]), Naturmusem of Bolzano, Kleingemünderstraße 111, Norwegian University of Science and Technology (NTNU), Norwegian Institute for Nature Research (NINA), University of Oslo (UiO), Szent István University, University of Salzburg, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Via A. Guidotti 39, Institute of Biochemistry, Società Veneziana di Scienze Naturali, University of British Columbia (UBC), Westerdijk Fungal Biodiversity Insitute [Utrecht] (WI), Royal Netherlands Academy of Arts and Sciences (KNAW), Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam [Amsterdam] (UvA), Aarhus University [Aarhus], Christian-Albrechts University of Kiel, Conservatoire et Jardin Botaniques de Genève, T.v.Lohuizenstraat 34, Institute of Geology, Czech Academy of Sciences [Prague] (CAS), Martin-Luther-University Halle-Wittenberg, Canadian Museum of Nature, Russian Academy of Sciences [Moscow] (RAS), Fungal & Decay Diagnostics, Muséum national d'Histoire naturelle (MNHN), Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), Fundación CEAM, Unité de recherche Mycologie et Sécurité des Aliments (MycSA), Institut National de la Recherche Agronomique (INRA), Associazione Micologica Bresadola - Emilia Romagna, Via Ottone Primo 90, Via Don Luigi Sturzo, Instituto de Investigaciones Fundamentales en Agricultura Tropical 'Alejandro de Humboldt', United States Department of Agriculture (USDA), Mae Fah Luang University [Thaïlande] (MFU), Via C. Ronzani 61, Conservatoire Botanique National de Midi-Pyrénées (CBNMP), Université de Lille, Montana State University (MSU), Universidade Federal de Pernambuco [Recife] (UFPE), Hooischelf 13, Bavarian Natural History Collections, Botanical Survey of India, Centre for Environmental Policy, Imperial College London, Universiteit Gent = Ghent University [Belgium] (UGENT), Carlos Zamora, Juan, Svensson, Mån, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Lui, Geml, József, Rosling, Anna, Adamčík, Slavomír, Ahti, Teuvo, Catherine Aime, M., Martyn Ainsworth, A., Albert, László, Albertó, Edgardo, Altés García, Alberto, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begoña, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonín, Vladimír, Aoki, Takayuki, Aptroot, André, Argaud, Didier, Imelda Arguello Sosa, Blanca, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Bori, Atienza, Violeta, Bandini, Ditte, Luís Baptista-Ferreira, João, Baral, Hans-Otto, Baroni, Tim, Weingart Barreto, Robert, Beker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellù, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajo, Bérešová-Guttová, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu., Bizio, Enrico, Bjork, Curti, Boekhout, Teun, Boertmann, David, Böhning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovička, Jan, Erik Brandrud, Tor, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, H. Burdsall Jr., Harold, Buyck, Bart, Rosa Burgaz, Ana, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbó, Joaquim, Carbone, Matteo, Castañeda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gille, Courtecuisse, Régi, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., Alves da Silva, Gladstone, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dämmrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, De Madrignac Bonzi, Bárbara, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Bálint, Martha Dios, Maria, Kumar Divakar, Pradeep, Douanla-Meli, Clovi, Douglas, Brian, Ricardo Drechsler-Santos, Elisandro, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventós, Fernando, Angel Etayo Salazar, Javier, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Péter, Flakus, Adam, Fos, Simón, Fournier, Jacque, Fraiture, André, Franchi, Paolo, Esperanza Franco Molano, Ana, Friebes, Gernot, Frisch, Andrea, Fryday, Alan, Furci, Giuliana, Galán Márquez, Ricardo, Garbelotto, Matteo, María García-Martín, Joaquina, García Otálora, Mónica A., García Sánchez, Dania, Gardiennet, Alain, Garnica, Sigisfredo, Garrido Benavent, Isaac, Gates, Genevieve, da Cruz Lima Gerlach, Alice, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gérald, Gueidan, Cécile, Gulden, Gro, FP Gusmão, Lui, Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nil, Halling, Roy E., Hansen, Karen, Bugge Harder, Christoffer, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphaël, Hobart, Caroline, Hoffmeister, Mascha, Høiland, Klau, Holec, Jan, Holien, Håkon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivančević, Bori, Jagers, Marian, Jaklitsch, Walter, Jansen, Annaelise, Jayawardena, Ruvishika S., Stjernegaard Jeppesen, Thoma, Jeppson, Mikael, Johnston, Peter, Magnus Jørgensen, Per, Kärnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintara, Karadelev, Mitko, Kasuya, Taiga, Kautmanová, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Dániel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolařík, Miroslav, Kõljalg, Urma, Košuthová, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondřej, Kout, Jiří, Kovács, Gábor M., Kříž, Martin, Kruys, Åsa, Kučera, Viktor, Kudzma, Lina, Kuhar, Francisco, Kukwa, Martin, Arun Kumar, T. K., Kunca, Vladimír, Kušan, Ivana, Kuyper, Thomas W., Lado, Carlo, Læssøe, Thoma, Lainé, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindström, Håkan, Liu, Xingzhong, Carlos Llarena Hernandez, Regulo, Llop, Esteve, Locsmándi, Csaba, Jean Lodge, Deborah, Loizides, Michael, Lőkös, László, Luangsa-ard, Jennifer, Lüderitz, Matthia, Lumbsch, Thorsten, Lutz, Matthia, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Marin-Felix, Yasmina, Marques, Guilhermina, Martínez-Gil, Rubén, Marson, Guy, Mata, Gerardo, Brandon Matheny, P., Harald Mathiassen, Geir, Matočec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mešić, Armin, Methven, Andrew S., Miettinen, Otto, Millanes Romero, Ana M., Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asunción, Muggia, Lucia, Muñoz González, Guillermo, Myllys, Leena, Nagy, István, Nagy, László G., Alice Neves, Maria, Niemelä, Tuomo, Nimis, Pierluigi, Niveiro, Nicola, Noordeloos, Machiel E., Nordin, Ander, Raouia Noumeur, Sara, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Oliveira Fiuza, Patricia, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pál-Fám, Ferenc, Palacio, Melissa, Palice, Zdeněk, Papp, Viktor, Pärtel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Liparini Pereira, Olinto, Pérez Daniëls, Pablo, Pérez-De-Gregorio Capella, Miquel À., Manuel Pérez del Amo, Carlo, Pérez Gorjón, Sergio, Pérez-Ortega, Sergio, Pérez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piątek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Pablo Pinzón Esquivel, Juan, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Prieto Álvaro, María, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Lui, Rambold, Gerhard, Ramírez, Natalia A., Raja, Huzefa, Raspé, Olivier, Raymundo, Tania, Réblová, Martina, Rebriev, Yury A., de Dios Reyes García, Juan, Ángel Ribes Ripoll, Miguel, Richard, Franck, Richardson, Mike J., Rico, Víctor J., Lucio Robledo, Gerardo, Rodrigues Barbosa, Flavia, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Rubio Casas, Lui, Rusevska, Katerina, Saar, Günter, Saar, Irja, Salcedo, Isabel, Salcedo Martínez, Sergio M., Salvador Montoya, Carlos A., Sánchez-Ramírez, Santiago, Vladimir Sandoval-Sierra, J., Santamaria, Sergi, Santana Monteiro, Josiane, Josef Schroers, Han, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Ševčíková, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klau, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu., Świerkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudière, Adrien, Tedebrand, Jan-Olof, Tena Lahoz, Raúl, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Göran, Thüs, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalčec, Zdenko, Tønsberg, Tor, Trichies, Gérard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Ulloa Sosa, Miguel, Urcelay, Carlo, Valade, Françoi, Valenzuela Garza, Ricardo, van den Boom, Pieter, Van Vooren, Nicola, Vasco-Palacios, Aida M., Vauras, Jukka, Manuel Velasco Santos, Juan, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mat, Weholt, Øyvind, Westberg, Martin, Yurchenko, Eugene, Zehnálek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., Ekman, Stefan, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Purdue University [West Lafayette], Universidade de Lisboa = University of Lisbon (ULISBOA), Universidade Federal de Viçosa = Federal University of Viçosa (UFV), Meise Botanic Garden [Belgium] (Plantentuin), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Westerdijk Fungal Biodiversity Institute [Utrecht] (WI), Conservatoire et Jardin Botaniques de Genève (CJBG), Staatlichen Naturwissenschaftlichen Sammlungen Bayerns (SNSB), Universiteit Gent = Ghent University (UGENT), Finnish Museum of Natural History, Plant Biology, Tuula Niskanen / Principal Investigator, Botany, Doctoral Programme in Wildlife Biology, IMT Lille Douai, Institut Catholique Lille, Univ. Artois, IMPact de l'Environnement Chimique sur la Santé humaine (IMPECS) - EA 4483, Naturalis Biodiversity Center, and Evolutionary and Population Biology (IBED, FNWI)
- Subjects
0106 biological sciences ,0301 basic medicine ,POSITIVE SELECTION ,Biologisk systematik ,VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Genetikk og genomikk: 474 ,Speciation ,[SDV]Life Sciences [q-bio] ,IMC11 ,nomenclature ,speciation ,taxonomy ,typification ,voucherless fungi ,Biodiversity ,voucherless fung ,VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Systematisk botanikk: 493 ,Biological Systematics ,Matematikk og Naturvitenskap: 400::Basale biofag: 470 [VDP] ,01 natural sciences ,Voucherless fungi ,purl.org/becyt/ford/1 [https] ,Typification ,Environmental DNA ,CY3-LABELED OLIGONUCLEOTIDE PROBES ,Nomenclature ,ta119 ,GENE TREES ,1184 Genetics, developmental biology, physiology ,Soil Biology ,FRESH-WATER FUNGI ,PE&RC ,Agricultural and Biological Sciences (miscellaneous) ,INTERNAL TRANSCRIBED SPACER ,FUNGAL PHYLOGENY ,[SDE]Environmental Sciences ,Taxonomy (biology) ,RIBOSOMAL-RNA ,INTEGRATIVE TAXONOMY ,Biology ,VDP::Mathematics and natural science: 400::Basic biosciences: 470::Genetics and genomics: 474 ,010603 evolutionary biology ,OPERATIONAL TAXONOMIC UNITS ,DNA sequencing ,Article ,SPECIES DELIMITATION ,03 medical and health sciences ,IMC11 nomenclature ,Internal transcribed spacer ,purl.org/becyt/ford/1.6 [https] ,Ecology, Evolution, Behavior and Systematics ,Bodembiologie ,Taxonomy ,VDP::Mathematics and natural science: 400::Zoology and botany: 480::Systematic botany: 493 ,Biology and Life Sciences ,IN-SITU HYBRIDIZATION ,CY3-LABELED ,Laboratorium voor Phytopathologie ,voucherless ,030104 developmental biology ,Taxon ,Evolutionary biology ,Laboratory of Phytopathology ,ta1181 ,BIODIVERSITY ,fungi ,OLIGONUCLEOTIDE PROBES - Abstract
Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN. Publisher’s Note A first version of this text was prepared by the first eight authors and the last one, given here. The other listed co-authors in the article PDF support the content, and their actual contributions varied from only support to additions that substantially improved the content. The full details of all co-authors, with their affiliations, are included in Supplementary Table 1 after p.175 of the article for reasons of clarity and space. Slavomír Adamčík Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Teuvo Ahti Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland M. Catherine Aime Purdue University, 915 W. State St., West Lafayette, Indiana 47907, U.S.A. A. Martyn Ainsworth Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom László Albert Hungarian Mycological Society, 1087 Könyves Kálmán krt. 40, Budapest, Hungary Edgardo Albertó Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, Universidad Nacional de San Martin-Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina Alberto Altés García Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Dmitry Ageev SIGNATEC Ltd., 630090, Novosibirsk, Akademgorodok (Novosibirsk Scientific Center), Inzhenernaya str., 22, Russia Reinhard Agerer Ludwig-Maximilians-Universität München, Menzinger Str. 67, 80638 München, Germany Begona Aguirre-Hudson Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom Joe Ammirati University of Washington, Seattle, Washington 98195-1800, U.S.A. Harry Andersson Eichhahnweg 29a, 38108 Braunschweig, Germany Claudio Angelini Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Apartado 21-9, Santo Domingo, Dominican Republic Vladimír Antonín Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Takayuki Aoki Genetic Resources Center, National Agriculture and Food Research Organization, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan André Aptroot ABL Herbarium, G.v.d.Veenstraat 107, 3762 XK Soest, The Netherlands Didier Argaud 40 rue du Justemont, 57290 Fameck, France Blanca Imelda Arguello Sosa Instituto Tecnológico de Ciudad Victoria, Tecnológico Nacional de México, Ciudad Victoria, Tamaulipas, Mexico Arne Aronsen Torødveien 54, 3135 Torød, Norway Ulf Arup Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Bita Asgari Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization, Tehran, Iran Boris Assyov Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Str., 1113 Sofia, Bulgaria Violeta Atienza Facultad de Ciencias Biológicas, Universitat de València, C/Dr Moliner 50, 46100, Burjasot, Valencia, Spain Ditte Bandini Panoramastr 47, 69257 Wiesenbach, Germany João Luís Baptista-Ferreira Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal Hans-Otto Baral Blaihofstr. 42, 72074 Tübingen, Germany Tim Baroni The State University of New York, 340 Bowers Hall, P.O. Box 2000, Cortland, New York 13045, U.S.A. Robert Weingart Barreto Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Henry Beker (1) Royal Holloway, University of London, United Kingdom; (2) Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Ann Bell 45 Gurney Road, Lower Hutt, New Zealand Jean-Michel Bellanger CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Francesco Bellù Naturmusem of Bolzano, CP 104, 39100, Bolzano, Italy Martin Bemmann Kleingemünderstraße 111, 69118 Heidelberg, Germany Mika Bendiksby NTNU, University Museum, Norwegian University of Science and Technology, 7491 Trondheim, Norway Egil Bendiksen Norwegian Institute for Nature Research, Gaustadalleen 21, 0349 Oslo, Norway Katriina Bendiksen Natural History Museum, University of Oslo, P.O. 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Bart Buyck Muséum National d’Histoire Naturelle, CP 39, ISYEB, UMR 7205 CNRS MNHN UPMC EPHE, 12 rue Buffon, 75005 Paris, France Ana Rosa Burgaz Facultad de Ciencias Biológicas, Universidad Complutense de Madrid, 28040 Madrid, Spain Vicent Calatayud Fundación CEAM, c/ Charles R. Darwin, 14, Parque Tecnológico, 46980 Paterna, Valencia, Spain Philippe Callac INRA, MycSA, CS 20032, 33882 Villenave d’Ornon, France Emanuele Campo Associazione Micologica Bresadola, Via Alessandro Volta 46, 38123 Trento, Italy Massimo Candusso Via Ottone Primo 90, 17021, Alassio, Savona, Italy Brigitte Capoen Queffioec, rue de Saint Gonval, 22710 Penvenan, France Joaquim Carbó Roser, 60, 17257 Torroella de Montgrí, Girona, Spain Matteo Carbone Via Don Luigi Sturzo 173 16148 Genova, Italy Rafael F. Castañeda-Ruiz Instituto de Investigaciones Fundamentales en Agricultura, Tropical ‘Alejandro de Humboldt’, OSDE, Grupo Agrícola, Calle 1 Esq. 2, Santiago de Las Vegas, C. Habana 17200, Cuba Michael A. 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García Otálora Herbaria Z+ZT, ETH Zürich, CHN D37, Universitätstr. 16, 8092 Zürich, Switzerland Dania García Sánchez Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain Alain Gardiennet 14 rue Roulette, 21260 Véronnes, France Sigisfredo Garnica Instituto de Bioquímica y Microbiología, Universidad Austral de Chile, Isla Teja Campus, Casilla 567, Valdivia, Chile Isaac Garrido Benavent Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Genevieve Gates Tasmanian Institute of Agriculture, Private Bag 54, Hobart, Tasmania 7001, Australia Alice da Cruz Lima Gerlach Conservatoire et Jardin Botaniques de la ville de Genève, Genève, Switzerland Masoomeh Ghobad-Nejhad Iranian Research Organization for Science and Technology, P.O. Box 15815-3538, Tehran 15819, Iran Tatiana B. 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Lendemer (1) Institute of Systematic Botany, New York Botanical Garden, 2900 Southern Blvd, Bronx, New York 10458-5126, U.S.A.; (2) Graduate Center, City University of New York, 365 5th Ave, New York, New York 10016, U.S.A. Laura Levin University of Buenos Aires, Junin 956, 1113, Buenos Aires, Argentina Uwe Lindemann Landesmuseum für Naturkunde, Münster, Germany Håkan Lindström Östansjö 150, 840 64 Kälarne, Sweden Xingzhong Liu Institute of Microbiology, Chinese Academy of Sciences, No 3 Park 1, Beichen West Road, Chaoyang District, Beijing 100101, China Regulo Carlos Llarena Hernandez Facultad de Ciencias Biológicas y Agropecuarias, Peñuela, Universidad Veracruzana, Amatlán de los Reyes, Ver., Mexico Esteve Llop Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 643, 08028 Barcelona, Spain Csaba Locsmándi Hungarian Natural History Museum, 1087 Budapest, Hungary Deborah Jean Lodge USDA Forest Service, NRS, P.O. Box 1377, Luquillo, Puerto Rico 00773-1377, U.S.A. Michael Loizides P.O. Box 58499, 3734 Limassol, Cyprus László Lőkös Hungarian Natural History Museum, 1087 Budapest, Hungary Jennifer Luangsa-ard National Center for Genetic Engineering and Biotechnology (BIOTEC), NSTDA, 113 Thailand Science Park, Phaholyothin Rd., Klong Nueng, Klong Luang, Pathum Thani 12120, Thailand Matthias Lüderitz AG Geobotanik Schleswig-Holstein & Hamburg, c/o University of Kiel, Olshausenstraße 75, 24098 Kiel, Germany Thorsten Lumbsch Field Museum, 1400 S. Lake Shore Dr., Chicago, Illinois 60605, U.S.A. Matthias Lutz Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076 Tübingen, Germany Dan Mahoney Callaghan Innovation, 69 Gracefield Road, Lower Hutt 5010, New Zealand Ekaterina Malysheva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Vera Malysheva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Patinjareveettil Manimohan University of Calicut, Kerala, 673 635, India Yasmina Marin-Felix Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Guilhermina Marques Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Tras-os-Montes and Alto Douro, Laboratory of Mycology and Soil Microbiology, 5000-801 Vila Real, Portugal Rubén Martínez-Gil Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Guy Marson Musée national d’histoire naturelle, 25 rue Münster, 2160 Luxembourg, Luxembourg Gerardo Mata Instituto de Ecología, A.C., Carretera antigua a Coatepec 351, El Haya, Xalapa 91070, Veracruz, Mexico P. Brandon Matheny University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Geir Harald Mathiassen Tromsø University Museum, University of Tromsø — The Arctic University of Norway, 9037 Tromsø, Norway Neven Matočec Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Helmut Mayrhofer Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Mehdi Mehrabi Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization, Tehran, Iran Ireneia Melo Botanical Garden, National Museum of Natural History and Science, University of Lisbon, Portugal Armin Mešić Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Andrew S. Methven Savannah State University, Savannah, Georgia 31404, U.S.A Otto Miettinen Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Ana M. Millanes Romero Universidad Rey Juan Carlos, 28933 Móstoles, Madrid, Spain Andrew N. Miller Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, Illinois 61820-6970, U.S.A. James K. Mitchell Harvard University, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Roland Moberg Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Pierre-Arthur Moreau Université Lille, Fac. Pharma. Lille, EA4483 IMPECS, 59000 Lille, France Gabriel Moreno Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Olga Morozova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Asunción Morte Facultad de Biología, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain Lucia Muggia University of Trieste, via L. Giorgieri 10, 34127 Trieste, Italy Guillermo Muñoz González Avda Valvanera N.32, 5D, 26500 Calahorra, La Rioja, Spain Leena Myllys Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland István Nagy Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary László G. Nagy Institute of Biochemistry, BRC-HAS, 6726 Szeged, Temesvari krt. 62, 6726 Szeged, Hungary Maria Alice Neves Universidade Federal de Santa Catarina, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis, Santa Catarina CEP 88040-900, Brazil Tuomo Niemelä Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Pier Luigi Nimis University of Trieste, via L. Giorgieri 10, 34127 Trieste, Italy Nicolas Niveiro Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Machiel E. Noordeloos Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands Anders Nordin Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Sara Raouia Noumeur Faculty of Natural and Life Sciences, University of Batna 2, 05000 Batna, Algeria Yuri Novozhilov Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Jorinde Nuytinck Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands Esteri Ohenoja Botanical Museum, University of Oulu, Finland Patricia Oliveira Fiuza Universidade Estadual de Feira de Santana, Av. Transnordestina, s/n, Bairro Novo Horizonte, CEP:44036-900, Feira de Santana, Bahia, Brazil Alan Orange National Museum of Wales, Cardiff CF10 3NP, United Kingdom Alexander Ordynets University of Kassel, Heinrich-Plett-Strasse 40, 34132 Kassel, Germany Beatriz Ortiz-Santana USDA Forest Service, Northern Research Station, One Gifford Pinchot Dr, Madison, Wisconsin 53726, U.S.A. Leticia Pacheco Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 México, D. F., Mexico Ferenc Pál-Fám Faculty of Agricultural and Environmental Sciences, Kaposvar University, 7400 Kaposvar, Hungary Melissa Palacio Universidade Federal do Rio Grande do Sul, Brazil Zdeněk Palice Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Viktor Papp Szent Istvan University, 1118 Budapest, Menesi st. 44, Hungary Kadri Pärtelv Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Julia Pawlowska Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland Aurelia Paz Urb. La Llosa, 219, 39509 Villanueva de la Peña, Mazcuerras, Cantabria, Spain Ursula Peintner Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria Shaun Pennycook Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1072, New Zealand Olinto Liparini Pereira Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Pablo Pérez Daniëls University of Córdoba, 14071, Córdoba, Spain Miquel À. Pérez-De-Gregorio Capella C/ Pau Casals, 6, 1º, 1ª, 17001, Girona, Spain Carlos Manuel Pérez del Amo C/ Luis de Ulloa, 1, 7º I, 26004 Logroño, Navarra, Spain Sergio Pérez Gorjón Universidad de Salamanca, Avda. Licenciado Mendez Nieto s/n, 37007 Salamanca, Spain Sergio Pérez-Ortega Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Israel Pérez-Vargas Facultad de Farmacia, Universidad de La Laguna, c/ Astrofísico Sánchez s/n 38071 La Laguna, Tenerife, Canary Islands, Spain Brian A. Perry California State University East Bay, Hayward, California 94542, U.S.A. Jens H. Petersen Nøruplundvej 2, 8400 Ebeltoft, Denmark Ronald H. Petersen University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Donald H. Pfister Harvard University, 22 Divinity Avenue, Cambridge MA 02138, U.S.A. Chayanard Phukhamsakda Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Marcin Piątek W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Meike Piepenbring Faculty of Biosciences, Goethe University Frankfurt am Main, Germany Raquel Pino-Bodas Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Juan Pablo Pinzón Esquivel Universidad Autónoma de Yucatán, Carretera Mérida-Xmatkuil Km. 15.5, Apdo. Postal: 4-116 Itzimná,C.P: 97100, Merida, Yucatan, Mexico Paul Pirot Rue des Peupliers 10, 6840 Neufchâteau, Belgium Eugene S. Popov Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Orlando Popoff Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina María Prieto Álvaro Universidad Rey Juan Carlos, 28933 Móstoles, Madrid, Spain Christian Printzen Senckenberg Forschungsinstitut und Naturmuseum Frankfurt, Abteilung Botanik und Molekulare Evolutionsforschung, Herbarium Senckenbergianum (FR), Senckenberganlage 25, 60325 Frankfurt am Main, Germany Nadezhda Psurtseva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Witoon Purahong Helmholtz Centre for Environmental Research GmbH — UFZ, Theodor-Lieser-Straße 4, 06120 Halle, Germany Luis Quijada Harvard University, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Gerhard Rambold University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany Natalia A. Ramírez Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Huzefa Raja University of North Carolina at Greensboro, 435 Sullivan Science Building, PO Box 26170, Greensboro North Carolina 27402-6170, U.S.A. Olivier Raspé Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Tania Raymundo Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11340 Ciudad de México, Mexico Martina Réblová Institute of Botany, Czech Academy of Sciences, Pruhonice, Czech Republic Yury A. Rebriev Southern Scientific Center, Russian Academy of Sciences, 41 Chehova str., Rostov-on-Don, 344006, Russia Juan de Dios Reyes García Paseo Virgen de Linarejos 6 2 D, Linares, Jaen, Spain Miguel Ángel Ribes Ripoll Avda. Pablo Neruda 120 F, 2°D, 28018 Madrid, Spain Franck Richard CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Mike J. Richardson Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom Víctor J. Rico Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Gerardo Lucio Robledo Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina Flavia Rodrigues Barbosa Universidade Federal de Mato Grosso, Av. Alexandre Ferronato, 1200, Setor Industrial, Sinop, Mato Grosso, Brazil Cristina Rodriguez-Caycedo UT Southwestern Medical Center, Dallas, Texas 75390, U.S.A. Pamela Rodriguez-Flakus W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Anna Ronikier W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Luis Rubio Casas Ul. Andrieja Sacharowa 1/1, 30-806 Kraków, Poland Katerina Rusevska Institute of Biology, Faculty of Natural Science and Mathematics, Ss. Cyril and Methodius University, Arhimedova 5, 1000 Skopje, Republic of Macedonia Günter Saar Dammenmühle 7, 77933 Lahr-Sulz, Germany Irja Saar Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Isabel Salcedo University of the Basque Country (UPV/EHU), Apdo 644, 48080 Bilbao, Spain Sergio M. Salcedo Martínez Facultad de Ciencias Biológicas, UANL. Ave. Pedro de Alba s/n esq. Manuel Barragán Cd. Universitaria, San Nicolás de los Garza Nuevo León, CP. 66451, Mexico Carlos A. Salvador Montoya Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Santiago Sánchez-Ramírez University of Toronto, 100 Queen’s Park, Toronto, Ontario M5S 2C6, Canada J. Vladimir Sandoval-Sierra Health Science Centre, University of Tennessee, U.S.A. Sergi Santamaria Facultat de Biociències, Edifici C, Despatx C1/331, Campus de la UAB, 08193 Bellaterra, (Cerdanyola del Vallès), Barcelona, Spain Josiane Santana Monteiro Botany Coordination, Museu Paraense Emílio Goeldi, 66077-830, Belém, Pará, Brazil Hans Josef Schroers Agricultural Institute of Slovenia, Hacquetova ulica 17, 1000 Ljubljana, Slovenia Barbara Schulz Institute of Microbiology, Technische Universität Braunschweig, Germany Geert Schmidt-Stohn Burgstr. 25, 29553 Bienenbüttel, Germany Trond Schumacher University of Oslo, P.O.Box 1066, Blindern, 0316 Oslo, Norway Beatrice Senn-Irlet RU Biodiversity and Conservation Biology, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstr. 111, 8903 Birmensdorf, Switzerland Hana Ševčíková Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Oleg Shchepin Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Takashi Shirouzu Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie 514-8507, Japan Anton Shiryaev Institute of Plant & Animal Ecology Ural Branch of the Russian Academy of Sciences, 620144 Ekaterinburg, 8 March str., 202/3, Russia Klaus Siepe Geeste 133, 46342 Velen, Germany Esteban B. Sir Fundación Miguel Lillo, Consejo Nacional de Investigaciones Científicas y Técnicas, Miguel Lillo 251, San Miguel de Tucumán 4000, Tucumán, Argentina Mohammad Sohrabi Iranian Research Organization for Science and Technology, P.O. Box 33535111, Tehran, Iran Karl Soop Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Viacheslav Spirin Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Toby Spribille University of Alberta, Edmonton, Alberta T6G 2R3, Canada Marc Stadler Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany Joost Stalpers Torenlaan 43, 3742CR Baarn, The Netherlands Soili Stenroos Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Ave Suija Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Stellan Sunhede Hökaskog Sandbacken 1, 533 92 Lundsbrunn, Sweden Sten Svantesson University of Gothenburg, Box 461, 40530 Göteborg, Sweden Sigvard Svensson Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Tatyana Yu. Svetasheva (1) Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia; (2) Department of Technologies of Living Systems, Tula State Lev Tolstoy Pedagogical University, Lenin ave. 125, Tula, 300026, Russia Krzysztof Świerkosz Museum of Natural History, Wrocław University, ul. H. Sienkiewicza 5, 50-335 Wrocław, Poland Heidi Tamm Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Hatira Taskin Faculty of Agriculture, University of Çukurova, 01330 Adana, Turkey Adrien Taudière CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Jan-Olof Tedebrand Sundsvall Mycological Society, Medelpad, Sweden Raúl Tena Lahoz C/Arreñales del Portillo B 21 1°D, 44003 Teruel, Spain Marina Temina Institute of Evolution, University of Haifa, Aba Khoushi Ave. 199, Mt. Carmel, Haifa 3498838, Israel Arne Thell Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Marco Thines Faculty of Biosciences, Goethe University Frankfurt am Main, Germany Göran Thor Swedish University of Agricultural Sciences, P. O. Box 7044, 750 07 Uppsala, Sweden Holger Thüs State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany Leif Tibell Evolutionary Biology Centre, Norbyvägen 18D, 75236 Uppsala, Sweden Sanja Tibell Evolutionary Biology Centre, Norbyvägen 18D, 75236 Uppsala, Sweden Einar Timdal Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Zdenko Tkalčec Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Tor Tønsberg University of Bergen, Allégaten 41, P.O. Box 7800, 5020 Bergen, Norway Gérard Trichies 5, impasse des Écoles S7700 Neufchef, France Dagmar Triebel Botanische Staatssammlung München, Menzinger Straße 67, 80638 München, Germany Andrei Tsurykau (1) F. Skorina Gomel State University, Sovetskaja Str. 104, 246019 Gomel, Belarus; (2) Institute of Natural Sciences, Samara National Research University, Moskovskoye shosse 34, 443086 Samara, Russia Rodham E. Tulloss Herbarium Amanitarum Rooseveltensis, P. O. Box 57, Roosevelt, New Jersey 08555-0057, U.S.A. Veera Tuovinen University of Alberta, Edmonton, Alberta T6G 2R3, Canada Miguel Ulloa Sosa Universidad Nacional Autónoma de México, Tercer Circuito/Sin Número, Ciudad Universitaria, Ciudad de México, C. P. 04510, Mexico Carlos Urcelay Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina François Valade 11 rue haras, le boqueteau, 91240 Saint-Michel-sur-Orge, France Ricardo Valenzuela Garza Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11340 Ciudad de México, Mexico Pieter van den Boom Arafura 16, 5691 JA Son, The Netherlands Nicolas Van Vooren Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Aida M. Vasco-Palacios Escuela de Microbiología, Universidad de Antioquia, AA1226, Fundación Biodiversa Colombia, Medellín, Colombia Jukka Vauras Herbarium TUR, Biodiversity Unit, University of Turku, 20014 Turku, Finland Juan Manuel Velasco Santos 3 C/Pontevedra, 18, 1º C, 37003 Salamanca, Spain Else Vellinga 861 Keeler Avenue, Berkeley, California 94708, U.S.A. Annemieke Verbeken Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Per Vetlesen Norges Sopp- og Nyttevekstforbund, Schweigaards gate 34F, 0191 Oslo, Norway Alfredo Vizzini University of Torino, Viale P.A. Mattioli 25, 10125, Torino, Italy Hermann Voglmayr University of Vienna, Rennweg 14, 1030 Vienna, Austria Sergey Volobuev Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Wolfgang von Brackel Kirchenweg 2, 91341 Röttenbach, Germany Elena Voronina Lomonosov Moscow State University, Biology Faculty, Moscow, Russia Grit Walther Arvid-Harnack-Str. 4, 07743 Jena, Germany Roy Watling Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom Evi Weber Blaihofstr. 42, 72074 Tübingen, Germany Mats Wedin Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Øyvind Weholt Nord University, Nesna, 8700 Nesna, Norway Martin Westberg Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Eugene Yurchenko Polessky State University, Dnyaprouskai flatylii str. 23, 225710, Pinsk, Belarus Petr Zehnálek Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Huang Zhang Kunming University of Science & Technology, Kunming, China Mikhail P. Zhurbenko Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia The following institutions are also supporting the present text (institutional support means that committees from the mentioned) Asociación Micológica Carlos Spegazzini (Argentina) Austrian Mycological Society (Austria) Croatian Mycological Society (Croatia) Committee of the Czech Scientific Society for Mycology (Czech Republic) The Netherlands Mycological Society (The Netherlands) Sociedad Española de Liquenología (Portugal/Spain) Iberian Mycological Society (which is under constitution, Portugal/Spain) Federación de Asociaciones Micológicas Andaluzas (FAMA) (Spain) Asociación Botánica y Micológica de Jaén (Spain) Asociación Micológica Hispalense Muscaria (Spain) Societat Micològica Valenciana (Spain)
- Published
- 2018
43. A crush on small fungi: An efficient and quick method for obtaining <scp>DNA</scp> from minute ascomycetes
- Author
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Åsa Kruys, Henrik Sundberg, and Stefan Ekman
- Subjects
0301 basic medicine ,Lysis ,biology ,Ecological Modeling ,Laboulbeniales ,Computational biology ,biology.organism_classification ,DNA extraction ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,law ,Botany ,Ecteinomyces ,Small species ,Gene ,Ecology, Evolution, Behavior and Systematics ,Polymerase chain reaction ,DNA - Abstract
We have developed a reliable technique for extracting DNA from single microscopic fungal thalli, including efficient cell disruption and transfer of cell content for subsequent polymerase chain reaction (PCR). The technique was primarily developed for members of the ascomycete order Laboulbeniales, which are minute fungi with tough cell walls that are exceedingly difficult to disrupt with standard extraction techniques. Our method makes routine amplification of DNA from single thalli possible, even from small species or poorly developed individuals. DNA release is accomplished in an entirely mechanical manner using an arbor press fitted with custom-made components. This approach has eliminated additional treatment such as laborious freeze-thaw cycles, enzymes, or lysing agents. The overall PCR success rate of 89% is comparable to or better than alternative protocols that make use of substantially larger amounts of fungal tissue. From 97% of the successful PCRs a total of 156 sequences from four gene regions were produced. Being able to restrict DNA extractions to a single thallus is critical to all genetic studies requiring data at the level of individual, e.g. population genetics. As all researchers working with minute uncultivable organisms in many respects face the same problems (effective handling of the material, small quantities of DNA etc.), the methodology described here has a potential to be widely applicable. Necessary custom-made components can be manufactured at fairly low cost by any precision-tool workshop using our detail drawings.
- Published
- 2017
44. (2687) Proposal to conserve the name Phyllopsora against Triclinum and Crocynia (Ramalinaceae, lichenized Ascomycota)
- Author
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Einar Timdal, Mika Bendiksby, Stefan Ekman, and Sonja Kistenich
- Subjects
0106 biological sciences ,0301 basic medicine ,Biologisk systematik ,biology ,Ascomycota ,Ramalinaceae ,Plant Science ,Biological Systematics ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Geography ,Phyllopsora ,Botany ,Ecology, Evolution, Behavior and Systematics - Abstract
(2687) Proposal to conserve the name Phyllopsora against Triclinum and Crocynia (Ramalinaceae, lichenized Ascomycota)
- Published
- 2019
45. Stories About Stories: Fantasy and the Remaking of Myth by Brian Attebery
- Author
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Stefan Ekman
- Subjects
Literature ,business.industry ,media_common.quotation_subject ,Art history ,General Medicine ,Mythology ,Art ,Fantasy ,business ,media_common - Published
- 2016
46. Fellhaneropsis almquistiorumsp. nov. from Europe (Pilocarpaceae, lichenized Ascomycota)
- Author
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Stefan Ekman
- Subjects
Ascocarp ,Pilocarpaceae ,Lecanorales ,biology ,Botany ,Plant Science ,Hymenium ,Lichen ,biology.organism_classification ,Crustose ,Ecology, Evolution, Behavior and Systematics ,Lecanoromycetes ,Thallus - Abstract
Fellhaneropsis almquistiorum S. Ekman, a lichenized ascomycete in the family Pilocarpaceae (Lecanorales, Lecanoromycetes) is described as new to science. It is characterized by the thin and filmy crustose thallus, small photobiont, apothecia with a yellowish to black disk and well developed black margin that becomes excluded with age, dark green and brown pigmentation in the proper exciple and hypothecium, a hymenium without pigment or with some green and brown pigment, more or less fusiform and 3-septate ascospores, abundant black pycnidia, and long and filiform conidia. The species is currently known from central Sweden and central Germany, where it inhabits shaded and acid to neutral rocks with few competing lichens. Historical records were all misidentified as Bacidia coprodes or any of its synonyms or misapplied names. Some specimens of F. almquistiorum contain a previously unrecorded pigment, tentatively named here Almquistiorum-yellow. This pigment is intensely golden yellow in water, does not react with KOH and fades with the addition of HCl or HNO3. A key to all known, pycnidiate members of Fellhaneropsis is provided.
- Published
- 2015
47. Using Active Learning Classrooms in Building an Infrastructure for Access to Research Data
- Author
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Helena Francke and Stefan Ekman
- Subjects
education ,Service (systems architecture) ,research data ,management ,access ,active learning classrooms ,Knowledge management ,business.industry ,Biblioteks- och informationsvetenskap ,Data management ,Professional development ,Job design ,Interpersonal communication ,Collegiality ,Information Studies ,Data access ,Active learning ,business ,Psychology - Abstract
Watch the VIDEO . As a central part of its work towards Open Science, Sweden is building an infrastructure for managing, storing, and providing access to research data. A vital component of this infrastructure will be functions at Swedish universities for supporting researchers with data access and management. To support these local functions, here referred to as Data Access Units (DAUs), a national network of DAUs from 28 universities is under formation. To assist in establishing DAUs and strengthening the network, the Swedish National Data Service and the University of Boras offer a joint professional development course to DAU staff. This course ran for the first time in spring 2018, with 21 participants from 12 universities. The course has three main objectives: to develop data management skills; to increase understanding of the institutional conditions for providing access to research data; and to strengthen the national network through interpersonal connections and collegial ties. The methodology chosen for the course is intended to promote collaboration between participants and to take into consideration their various types and levels of expertise and experience. This has resulted in a distance-learning course with four physical meetings, during which an Active Learning Classroom (ALC) methodology is used: participants work actively in groups with instructor-facilitated tasks. The ALC work is combined with significant use of collaborative work between meetings. Our presentation will show how ALC methodology can be used to support the establishment of DAUs and a DAU network. We will discuss some examples of course elements which contribute to the objectives. The discussion will be based on the facilitators’ analyses and on the participants’ answers to an evaluation questionnaire. Participants found that they developed data management skills by working with cases as ALC exercises, and thought these skills would be directly applicable to their work in the DAU. Such ALC exercises were designed around for instance anonymising datasets and writing a data management plan for a potential study. In addressing institutional conditions necessary for data access , we observed how task design and perceived relevance of a topic are important for how participants engage with various aspects of a task. For example, the ALC exercise on legal frameworks was easier to align with perceived DAU needs than the less focused and more abstract exercise on models and principles such as OAIS and FAIR. A clear outcome of the course was a strengthening of the DAU network. Participants gained a sense of collegiality by working in different constellations during various ALC tasks. The social activities – breaks and meals – intentionally included in the course also allowed classroom discussions to flow into more informal spaces. The DAUs and their national network is a vital part of the Swedish infrastructure for Open Science concerning access to research data. The presentation will end with reflections on how ALC methodology can also be employed to strengthen data management and accessibility skills in other parts of the infrastructure, for instance with researchers.
- Published
- 2018
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48. Two Basidiomycete Fungi in the Cortex of Wolf Lichens
- Author
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Veera, Tuovinen, Stefan, Ekman, Göran, Thor, Dan, Vanderpool, Toby, Spribille, and Hanna, Johannesson
- Subjects
Lichens ,Basidiomycota ,Parmeliaceae ,Symbiosis - Abstract
Since the late 1800s, mycologists have been detecting fungi above and beyond the assumed single fungus in lichen thalli [1-6]. Over the last century, these fungi have been accorded roles ranging from commensalists to pathogens. Recently, Cyphobasidiales yeasts were shown to be ubiquitous in the cortex layer of many macrolichens [7], but for most species, little is known of their cellular distribution and constancy beyond visible fruiting structures. Here, we demonstrate the occurrence of an additional and distantly related basidiomycete, Tremella, in 95% of studied thalli in a global sample of one of the most intensively studied groups of lichens, the wolf lichens (genus Letharia). Tremella species are reported from a wide range of lichen genera [8], but until now, their biology was deduced from fruiting bodies (basidiomata) formed on lichen thalli. Based on this, they have been thought to be uncommon to rare, to occur exclusively in a hyphal form, and to be parasitic on the dominant fungal partner [9, 10]. We show that, in wolf lichens, Tremella occurs as yeast cells also in thalli that lack basidiomata and infer that this is its dominant stage in nature. We further show that the hyphal stage, when present in Letharia, is in close contact with algal cells, challenging the assumption that lichen-associated Tremella species are uniformly mycoparasites. Our results suggest that extent of occurrence and cellular interactions of known fungi within lichens have historically been underestimated and raise new questions about their function in specific lichen symbioses.
- Published
- 2018
49. Position specificity in the genus Coreomyces (Laboulbeniomycetes, Ascomycota)
- Author
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Stefan Ekman, Johannes Bergsten, Henrik Sundberg, and Åsa Kruys
- Subjects
Laboulbeniaceae ,Biologisk systematik ,PHYLOGENY ,Laboulbeniales ,Biological Systematics ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Microbiology ,CORIXIDAE ,Evolutionsbiologi ,Phylogenetics ,Genus ,Clade ,Ribosomal DNA ,Ecology, Evolution, Behavior and Systematics ,Evolutionary Biology ,biology ,Laboulbeniomycetes ,Corixidae ,FUNGI ,DNA ,INSECT ,Corixidae DNA Fungi host-specificity insect phylogeny ,HOST-SPECIFICITY ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Evolutionary biology - Abstract
To study position specificity in the insect-parasitic fungal genus Coreomyces (Laboulbeniaceae, Laboulbeniales), we sampled corixid hosts (Corixidae, Heteroptera) in southern Scandinavia. We detected Coreomyces thalli in five different positions on the hosts. Thalli from the various positions grouped in four distinct clusters in the resulting gene trees, distinctly so in the ITS and LSU of the nuclear ribosomal DNA, less so in the SSU of the nuclear ribosomal DNA and the mitochondrial ribosomal DNA. Thalli from the left side of abdomen grouped in a single cluster, and so did thalli from the ventral right side. Thalli in the mid-ventral position turned out to be a mix of three clades, while thalli growing dorsally grouped with thalli from the left and right abdominal clades. The mid-ventral and dorsal positions were found in male hosts only. The position on the left hemelytron was shared by members from two sister clades. Statistical analyses demonstrate a significant positive correlation between clade and position on the host, but also a weak correlation between host sex and clade membership. These results indicate that sex-of-host specificity may be a non-existent extreme in a continuum, where instead weak preferences for one host sex may turn out to be frequent.
- Published
- 2018
50. Map and Text : World-Architecture and the Case of Miéville’s Perdido Street Station
- Author
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Stefan Ekman
- Subjects
Litteraturvetenskap ,General Literature Studies ,Specific Literatures ,Litteraturstudier ,China Miéville ,fantasy literature ,fantasy maps ,Perdido Street Station ,world-architecture ,world-building - Abstract
In this essay, the author argues that analysing a fantasy novel that comes with a map without taking into account the dynamic between map and text would be to omit a vital part of the fictional world. By drawing on the Vitruvian triad of architectural theory, the construction of the world in China Miéville’s Perdido Street Station (2001) is analysed through some building-blocks of that world that emerge prominently on the novel’s map. After a brief discussion of world-building and fantasy maps, the map is taken as a starting point in order to demonstrate how the transport network in general and railways and skyrail in particular are given distinctive form. One function that these building-blocks have in the novel is to provide locations which the reader can use to link dynamically between text and map, thus relating locations to each other spatially and adding layers of meaning to them, turning them from spaces into places. Passages in the text are used to show how it is possible to move between map and text, and how such movement not only augments the spatiality of the world but that it also provides a way to discuss the city’s social and economic issues by juxtaposing different characters’ perspectives.
- Published
- 2018
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