6,869 results on '"Stanley, T."'
Search Results
2. Transverse Emittance Reduction in Muon Beams by Ionization Cooling
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The MICE Collaboration, Bogomilov, M., Tsenov, R., Vankova-Kirilova, G., Song, Y. P., Tang, J. Y., Li, Z. H., Bertoni, R., Bonesini, M., Chignoli, F., Mazza, R., de Bari, A., Orestano, D., Tortora, L., Kuno, Y., Sakamoto, H., Sato, A., Ishimoto, S., Chung, M., Sung, C. K., Filthaut, F., Fedorov, M., Jokovic, D., Maletic, D., Savic, M., Jovancevic, N., Nikolov, J., Vretenar, M., Ramberger, S., Asfandiyarov, R., Blondel, A., Drielsma, F., Karadzhov, Y., Boyd, S., Greis, J. R., Lord, T., Pidcott, C., Taylor, I., Charnley, G., Collomb, N., Dumbell, K., Gallagher, A., Grant, A., Griffiths, S., Hartnett, T., Martlew, B., Moss, A., Muir, A., Mullacrane, I., Oates, A., Owens, P., Stokes, G., Warburton, P., White, C., Adams, D., Bayliss, V., Boehm, J., Bradshaw, T. W., Brown, C., Courthold, M., Govans, J., Hayler, T., Hills, M., Lagrange, J. B., Macwaters, C., Nichols, A., Preece, R., Ricciardi, S., Rogers, C., Stanley, T., Tarrant, J., Tucker, M., Watson, S., Wilson, A., Bayes, R., Nugent, J. C., Soler, F. J. P., Chatzitheodoridis, G. T., Dick, A. J., Ronald, K., Whyte, C. G., Young, A. R., Gamet, R., Cooke, P., Blackmore, V. J., Colling, D., Dobbs, A., Dornan, P., Franchini, P., Hunt, C., Jurj, P. B., Kurup, A., Long, K., Martyniak, J., Middleton, S., Pasternak, J., Uchida, M. A., Cobb, J. H., Booth, C. N., Hodgson, P., Langlands, J., Overton, E., Pec, V., Smith, P. J., Wilbur, S., Ellis, M., Gardener, R. B. S., Kyberd, P., Nebrensky, J. J., DeMello, A., Gourlay, S., Lambert, A., Li, D., Luo, T., Prestemon, S., Virostek, S., Palmer, M., Witte, H., Adey, D., Bross, A. D., Bowring, D., Liu, A., Neuffer, D., Popovic, M., Rubinov, P., Freemire, B., Hanlet, P., Kaplan, D. M., Mohayai, T. A., Rajaram, D., Snopok, P., Torun, Y., Cremaldi, L. M., Sanders, D. A., Coney, L. R., Hanson, G. G., and Heidt, C.
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Physics - Accelerator Physics ,High Energy Physics - Experiment - Abstract
Accelerated muon beams have been considered for next-generation studies of high-energy lepton-antilepton collisions and neutrino oscillations. However, high-brightness muon beams have not yet been produced. The main challenge for muon acceleration and storage stems from the large phase-space volume occupied by the beam, derived from the muon production mechanism through the decay of pions from proton collisions. Ionization cooling is the technique proposed to decrease the muon beam phase-space volume. Here we demonstrate a clear signal of ionization cooling through the observation of transverse emittance reduction in beams that traverse lithium hydride or liquid hydrogen absorbers in the Muon Ionization Cooling Experiment (MICE). The measurement is well reproduced by the simulation of the experiment and the theoretical model. The results shown here represent a substantial advance towards the realization of muon-based facilities that could operate at the energy and intensity frontiers., Comment: 23 pages and 5 figures
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- 2023
3. Proposed revisions of part of the test procedures for furnaces and boilers in ASHRAE standard 103-1993
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Liu, Stanley T.
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- 2002
4. A Receptor Story: Insulin Resistance Pathophysiology and Physiologic Insulin Resensitization's Role as a Treatment Modality.
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Lewis, Stanley T, Greenway, Frank, Tucker, Tori R, Alexander, Michael, Jackson, Levonika K, Hepford, Scott A, Loveridge, Brian, and Lakey, Jonathan RT
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Humans ,Diabetes Mellitus ,Type 2 ,Insulin Resistance ,Insulin ,Blood Glucose ,Ligands ,Insulin ,Regular ,Human ,T2D ,carbohydrate metabolism ,diabetes ,insulin resistance ,physiologic insulin resensitization ,Clinical Research ,Diabetes ,Prevention ,Metabolic and endocrine ,Other Chemical Sciences ,Genetics ,Other Biological Sciences ,Chemical Physics - Abstract
Physiologic insulin secretion consists of an oscillating pattern of secretion followed by distinct trough periods that stimulate ligand and receptor activation. Apart from the large postprandial bolus release of insulin, β cells also secrete small amounts of insulin every 4-8 min independent of a meal. Insulin resistance is associated with a disruption in the normal cyclical pattern of insulin secretion. In the case of type-2 diabetes, β-cell mass is reduced due to apoptosis and β cells secrete insulin asynchronously. When ligand/receptors are constantly exposed to insulin, a negative feedback loop down regulates insulin receptor availability to insulin, creating a relative hyperinsulinemia. The relative excess of insulin leads to insulin resistance (IR) due to decreased receptor availability. Over time, progressive insulin resistance compromises carbohydrate metabolism, and may progress to type-2 diabetes (T2D). In this review, we discuss insulin resistance pathophysiology and the use of dynamic exogenous insulin administration in a manner consistent with more normal insulin secretion periodicity to reverse insulin resistance. Administration of insulin in such a physiologic manner appears to improve insulin sensitivity, lower HgbA1c, and, in some instances, has been associated with the reversal of end-organ damage that leads to complications of diabetes. This review outlines the rationale for how the physiologic secretion of insulin orchestrates glucose metabolism, and how mimicking this secretion profile may serve to improve glycemic control, reduce cellular inflammation, and potentially improve outcomes in patients with diabetes.
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- 2023
5. Multiple Coulomb Scattering of muons in Lithium Hydride
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Bogomilov, M., Tsenov, R., Vankova-Kirilova, G., Song, Y. P., Tang, J. Y., Li, Z. H., Bertoni, R., Bonesini, M., Chignoli, F., Mazza, R., Palladino, V., de Bari, A., Orestano, D., Tortora, L., Kuno, Y., Sakamoto, H., Sato, A., Ishimoto, S., Chung, M., Sung, C. K., Filthaut, F., Fedorov, M., Jokovic, D., Maletic, D., Savic, M., Jovancevic, N., Nikolov, J., Vretenar, M., Ramberger, S., Asfandiyarov, R., Blondel, A., Drielsma, F., Karadzhov, Y., Charnley, G., Collomb, N., Dumbell, K., Gallagher, A., Grant, A., Griffiths, S., Hartnett, T., Martlew, B., Moss, A., Muir, A., Mullacrane, I., Oates, A., Owens, P., Stokes, G., Warburton, P., White, C., Adams, D., Bayliss, V., Boehm, J., Bradshaw, T. W., Brown, C., Courthold, M., Govans, J., Hills, M., Lagrange, J. -B., Macwaters, C., Nichols, A., Preece, R., Ricciardi, S., Rogers, C., Stanley, T., Tarrant, J., Tucker, M., Watson, S., Wilson, A., Bayes, R., Nugent, J. C., Soler, F. J. P., Gamet, R., Cooke, P., Blackmore, V. J., Colling, D., Dobbs, A., Dornan, P., Franchini, P., Hunt, C., Jurj, P. B., Kurup, A., Long, K., Martyniak, J., Middleton, S., Pasternak, J., Uchida, M. A., Cobb, J. H., Booth, C. N., Hodgson, P., Langlands, J., Overton, E., Pec, V., Smith, P. J., Wilbur, S., Chatzitheodoridis, G. T., Dick, A. J., Ronald, K., Whyte, C. G., Young, A. R., Boyd, S., Greis, J. R., Lord, T., Pidcott, C., Taylor, I., Ellis, M., Gardener, R. B. S., Kyberd, P., Nebrensky, J. J., Palmer, M., Witte, H., Adey, D., Bross, A. D., Bowring, D., Hanlet, P., Liu, A., Neuffer, D., Popovic, M., Rubinov, P., DeMello, A., Gourlay, S., Lambert, A., Li, D., Luo, T., Prestemon, S., Virostek, S., Freemire, B., Kaplan, D. M., Mohayai, T. A., Rajaram, D., Snopok, P., Torun, Y., Cremaldi, L. M., Sanders, D. A., Summers, D. J., Coney, L. R., Hanson, G. G., and Heidt, C.
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High Energy Physics - Experiment ,Physics - Instrumentation and Detectors - Abstract
Multiple Coulomb Scattering (MCS) is a well known phenomenon occurring when charged particles traverse materials. Measurements of muons traversing low $Z$ materials made in the MuScat experiment showed that theoretical models and simulation codes, such as GEANT4 (v7.0), over-estimated the scattering. The Muon Ionization Cooling Experiment (MICE) measured the cooling of a muon beam traversing a liquid hydrogen or lithium hydride (LiH) energy absorber as part of a programme to develop muon accelerator facilities, such as a Neutrino Factory or a Muon Collider. The energy loss and MCS that occur in the absorber material are competing effects that alter the performance of the cooling channel. Therefore measurements of MCS are required in order to validate the simulations used to predict the cooling performance in future accelerator facilities. We report measurements made in the MICE apparatus of MCS using a LiH absorber and muons within the momentum range 160 to 245 MeV/c. The measured RMS scattering width is about 9% smaller than that predicted by the approximate formula proposed by the Particle Data Group. Data at 172, 200 and 240 MeV/c are compared to the GEANT4 (v9.6) default scattering model. These measurements show agreement with this more recent GEANT4 (v9.6) version over the range of incident muon momenta., Comment: 20 pages, 14 figures, journal
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- 2022
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6. Footprint of publication selection bias on meta-analyses in medicine, environmental sciences, psychology, and economics
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Bartoš, František, Maier, Maximilian, Wagenmakers, Eric-Jan, Nippold, Franziska, Doucouliagos, Hristos, Ioannidis, John P. A., Otte, Willem M., Sladekova, Martina, Deresssa, Teshome K., Bruns, Stephan B., Fanelli, Daniele, and Stanley, T. D.
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Statistics - Applications - Abstract
Publication selection bias undermines the systematic accumulation of evidence. To assess the extent of this problem, we survey over 68,000 meta-analyses containing over 700,000 effect size estimates from medicine (67,386/597,699), environmental sciences (199/12,707), psychology (605/23,563), and economics (327/91,421). Our results indicate that meta-analyses in economics are the most severely contaminated by publication selection bias, closely followed by meta-analyses in environmental sciences and psychology, whereas meta-analyses in medicine are contaminated the least. After adjusting for publication selection bias, the median probability of the presence of an effect decreased from 99.9% to 29.7% in economics, from 98.9% to 55.7% in psychology, from 99.8% to 70.7% in environmental sciences, and from 38.0% to 29.7% in medicine. The median absolute effect sizes (in terms of standardized mean differences) decreased from d = 0.20 to d = 0.07 in economics, from d = 0.37 to d = 0.26 in psychology, from d = 0.62 to d = 0.43 in environmental sciences, and from d = 0.24 to d = 0.13 in medicine.
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- 2022
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7. Correct Standard Errors Can Bias Meta-Analysis
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Stanley, T. D. and Doucouliagos, Hristos
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Partial correlation coefficients are often used as effect sizes in the meta-analysis and systematic review of multiple regression analysis research results. There are two well-known formulas for the variance and thereby for the standard error (SE) of partial correlation coefficients (PCC). One is considered the "correct" variance in the sense that it better reflects the variation of the sampling distribution of partial correlation coefficients. The second is used to test whether the population PCC is zero, and it reproduces the test statistics and the p-values of the original multiple regression coefficient that PCC is meant to represent. Simulations show that the "correct" PCC variance causes random effects to be more biased than the alternative variance formula. Meta-analyses produced by this alternative formula statistically dominate those that use "correct" SEs. Meta-analysts should never use the "correct" formula for partial correlations' standard errors.
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- 2023
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8. Robust Bayesian Meta-Analysis: Model-Averaging across Complementary Publication Bias Adjustment Methods
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Bartoš, František, Maier, Maximilian, Wagenmakers, Eric-Jan, Doucouliagos, Hristos, and Stanley, T. D.
- Abstract
Publication bias is a ubiquitous threat to the validity of meta-analysis and the accumulation of scientific evidence. In order to estimate and counteract the impact of publication bias, multiple methods have been developed; however, recent simulation studies have shown the methods' performance to depend on the true data generating process, and no method consistently outperforms the others across a wide range of conditions. Unfortunately, when different methods lead to contradicting conclusions, researchers can choose those methods that lead to a desired outcome. To avoid the condition-dependent, all-or-none choice between competing methods and conflicting results, we extend robust Bayesian meta-analysis and model-average across two prominent approaches of adjusting for publication bias: (1) selection models of "p"-values and (2) models adjusting for small-study effects. The resulting model ensemble weights the estimates and the evidence for the absence/presence of the effect from the competing approaches with the support they receive from the data. Applications, simulations, and comparisons to preregistered, multi-lab replications demonstrate the benefits of Bayesian model-averaging of complementary publication bias adjustment methods.
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- 2023
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9. Physiologic Insulin Resensitization as a Treatment Modality for Insulin Resistance Pathophysiology
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Greenway, Frank, Loveridge, Brian, Grimes, Richard M, Tucker, Tori R, Alexander, Michael, Hepford, Scott A, Fontenot, Justin, Nobles-James, Candi, Wilson, Carol, Starr, Adam M, Abdelsaid, Mohammed, Lewis, Stanley T, and Lakey, Jonathan RT
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Biochemistry and Cell Biology ,Biological Sciences ,Medicinal and Biomolecular Chemistry ,Chemical Sciences ,Microbiology ,Diabetes ,Metabolic and endocrine ,Diabetes Mellitus ,Type 2 ,Glycated Hemoglobin ,Humans ,Insulin Resistance ,Insulin Secretion ,Insulin ,Regular ,Human ,Pancreas ,insulin resistance ,diabetes ,metabolic disorder ,obesity ,insulin infusion ,physiologic insulin resensitization ,PIR ,treatment modality ,neuropathy ,nephropathy ,retinopathy ,cardiovascular disease ,chronic kidney disease ,CKD ,Other Chemical Sciences ,Genetics ,Other Biological Sciences ,Chemical Physics ,Biochemistry and cell biology ,Medicinal and biomolecular chemistry - Abstract
Prevalence of type 2 diabetes increased from 2.5% of the US population in 1990 to 10.5% in 2018. This creates a major public health problem, due to increases in long-term complications of diabetes, including neuropathy, retinopathy, nephropathy, skin ulcers, amputations, and atherosclerotic cardiovascular disease. In this review, we evaluated the scientific basis that supports the use of physiologic insulin resensitization. Insulin resistance is the primary cause of type 2 diabetes. Insulin resistance leads to increasing insulin secretion, leading to beta-cell exhaustion or burnout. This triggers a cascade leading to islet cell destruction and the long-term complications of type 2 diabetes. Concurrent with insulin resistance, the regular bursts of insulin from the pancreas become irregular. This has been treated by the precise administration of insulin more physiologically. There is consistent evidence that this treatment modality can reverse the diabetes-associated complications of neuropathy, diabetic ulcers, nephropathy, and retinopathy, and that it lowers HbA1c. In conclusion, physiologic insulin resensitization has a persuasive scientific basis, significant treatment potential, and likely cost benefits.
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- 2022
10. Performance of the MICE diagnostic system
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The MICE collaboration, Bogomilov, M., Tsenov, R., Vankova-Kirilova, G., Song, Y. P., Tang, J. Y., Li, Z. H., Bertoni, R., Bonesini, M., Chignoli, F., Mazza, R., Palladino, V., de Bari, A., Orestano, D., Tortora, L., Kuno, Y., Sakamoto, H., Sato, A., Ishimoto, S., Chung, M., Sung, C. K., Filthaut, F., Fedorov, M., Jokovic, D., Maletic, D., Savic, M., Jovancevic, N., Nikolov, J., Vretenar, M., Ramberger, S., Asfandiyarov, R., Blondel, A., Drielsma, F., Karadzhov, Y., Charnley, G., Collomb, N., Dumbell, K., Gallagher, A., Grant, A., Griffiths, S., Hartnett, T., Martlew, B., Moss, A., Muir, A., Mullacrane, I., Oates, A., Owens, P., Stokes, G., Warburton, P., White, C., Adams, D., Bayliss, V., Boehm, J., Bradshaw, T. W., Brown, C., Courthold, M., Govans, J., Hills, M., Lagrange, J. -B., Macwaters, C., Nichols, A., Preece, R., Ricciardi, S., Rogers, C., Stanley, T., Tarrant, J., Tucker, M., Watson, S., Wilson, A., Bayes, R., Nugent, J. C., Soler, F. J. P., Gamet, R., Cooke, P., Blackmore, V. J., Colling, D., Dobbs, A., Dornan, P., Franchini, P., Hunt, C., Jurj, P. B., Kurup, A., Long, K., Martyniak, J., Middleton, S., Pasternak, J., Uchida, M. A., Cobb, J. H., Booth, C. N., Hodgson, P., Langlands, J., Overton, E., Pec, V., Smith, P. J., Wilbur, S., Chatzitheodoridis, G. T., Dick, A. J., Ronald, K., Whyte, C. G., Young, A. R., Boyd, S., Greis, J. R., Lord, T., Pidcott, C., Taylor, I., Ellis, M., Gardener, R. B. S., Kyberd, P., Nebrensky, J. J., Palmer, M., Witte, H., Adey, D., Bross, A. D., Bowring, D., Hanlet, P., Liu, A., Neuffer, D., Popovic, M., Rubinov, P., DeMello, A., Gourlay, S., Lambert, A., Li, D., Luo, T., Prestemon, S., Virostek, S., Freemire, B., Kaplan, D. M., Mohayai, T. A., Rajaram, D., Snopok, P., Torun, Y., Cremaldi, L. M., Sanders, D. A., Summers, D. J., Coney, L. R., Hanson, G. G., and Heidt, C.
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Physics - Accelerator Physics - Abstract
Muon beams of low emittance provide the basis for the intense, well-characterised neutrino beams of a neutrino factory and for multi-TeV lepton-antilepton collisions at a muon collider. The international Muon Ionization Cooling Experiment (MICE) has demonstrated the principle of ionization cooling, the technique by which it is proposed to reduce the phase-space volume occupied by the muon beam at such facilities. This paper documents the performance of the detectors used in MICE to measure the muon-beam parameters, and the physical properties of the liquid hydrogen energy absorber during running., Comment: 27 pages, 18 figures
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- 2021
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11. Safety and efficacy of doravirine as first-line therapy in adults with HIV-1: week 192 results from the open-label extensions of the DRIVE-FORWARD and DRIVE-AHEAD phase 3 trials
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Martins, Marcelo D, Cahn, Pedro E, Lopardo, Gustavo D, Porteiro, Norma, Bloch, Mark Theo, Baker, David Alfred, Roth, Norman, Moore, Richard J, Finlayson, Robert James, McMahon, James, Rieger, Armin, Zoufaly, Alexander, Schmied, Brigitte, Hartl, Sylvia, Zangerle, Robert, Smaill, Fiona, Walmsley, Sharon L, Conway, Brian, Rachlis, Anita, Smith, Graham H R, Perez Cortes, Carlos, Afani, Alejandro, Campos Barker, Maria Isabel E, Chahin Anania, Carolina Eugenia, Reyes, Marcelo J. Wolff, Gerstoft, Jan, Weis, Nina, Laursen, Alex Lund, Molina, Jean-Michel, Yazdanpanah, Yazdan, Cotte, Laurent, Raffi, Francois, Slama, Laurence, Morlat, Philippe, Girard, Pierre-Marie, Katlama, Christine, Rockstroh, Juergen K, Arasteh, Keikawus, Esser, Stefan, Stoehr, Albrecht, Stellbrink, Hans-Juergen, Stoll, Matthias, Schuermann, Dirk, Faetkenheuer, Gerd, Bogner, Johannes Richard, Lutz, Thomas, Baumgarten, Axel, Jaeger, Hans, Wiese, Carmen, Gori, Andrea, Migliorino, Guglielmo Marco, Coltan, Gabriel, Constandis, Felicia, Erscoiu, Simona M, Prisacariu, Liviu-Jany, Rugina, Sorin, Streinu-Cercel, Adrian, Pokrovsky, Vadim V, Zakharova, Natalia, Shuldyakov, Andrey Anatolyevich, Ryamova, Elena Pavlovna, Kulagin, Valeriy Viktorovich, Tsybakova, Olga Aleksandrovna, Orlova-Morozova, Elena, Nagimova, Firaya, Voronin, Evgeniy, Shimonova, Tatiana Evgenyevna, Kozyrev, Oleg Anatolyevich, Orrell, Catherine, Lombaard, Johannes Jurgens, Botes, Margaretha Elizabeth, de Jager, Marleen, Segorb, Joaquin Portilla, Gatell Artigas, Josep Maria, Mallolas Masferrer, Josep, Guillen, Santiago Moreno, Perez Elias, Maria Jesus, Arribas Lopez, Jose R, Puigmal, Eugenia Negredo, Podzamczer Palter, Daniel, Ortega, Frederico Pulido, Garcia, Jesus Troya, de los Santos Gil, Ignacio, Berenguer, Juan, Nelson, Mark Richard, Williams, Ian G, Johnson, Margaret A, Khoo, Saye, Schembri, Gabriel, Clarke, Amanda, Gompels, Mark, Fox, Julie Meriel, Lwanga, Julianne, Taylor, Steven John, Dockrell, David Harold, Kegg, Stephen, Hagins, Debbie P, Osiyemi, Olayemi O, Prelutsky, David James, Ramgopal, Moti N, Scarsella, Anthony J, Dretler, Robin, DeJesus, Edwin, Bettacchi, Christopher J, Sims III, James, Clay, Patrick G, Bellos, Nicholaos C, Thompson, Melanie A, Montero, Jose, McDonald, Cheryl K, Creticos, Catherine, Shamblaw, David, Terrelonge, Antonio E, Valdes, Martin, Tashima, Karen T, Robbins, William J, Elion, Richard A, Goldstein, Deborah, Slim, Jihad, Lalezari, Jacob Paul, Pushkin, Richard, Lalla-Reddy, Sujata N, Win, Sanda S, Ruane, Peter Jerome, Mills, Anthony Martin, Cade, Jerry L, Campo, Rafael, Dietz, Craig A, Hoffman-Terry, Margaret, Blick, Gary, Rubin, David Scott, Mayer, Cynthia, Rondon, Juan Carlos, Cook, Paul P, Daar, Eric, Kumar, Princy N, Swindells, Susan, Castro, Jose Guillermo, Morales-Ramirez, Javier O, Santiago, Lizette, Santana-Bagur, Jorge L, Vandekerckhove, Linos, Florence, Eric, De Wit, Stephane, Derdelinckx, Inge, Vandercam, Bernard, Belkhir, Leila, De Wet, Joseph, Lebouche, Bertrand, Trottier, Benoit, Longpre, Daniele, Szabo, Jason, LeBlanc, Roger P, Jensen, Werner, Gonzalez, Alvaro Rojas, Beltran, Carlos, Sussmann, Otto Alberto, Velez, Juan Diego, Onate, Jose Millan, Nielsen, Henrik, Degen, Olaf, Stephan, Christoph, Arathoon, Eduardo, Lopez, Rudy Manuel, Rojas Alvarado, Evelyn Michelle, Gonzalez Patzan, Luis Demetrio, Meija, Carlos R, Pinzon, Rodolfo, Parchment, Charles, Sthoeger, Zev, Chowers, Michal, Riesenberg, Klaris, Shahar, Eduardo, Levy, Itzchak, Quintero Perez, Nora Patricia, Andrade-Villanueva, Jaime Federico, Crabtree Ramirez, Brenda Eloisa, Rijnders, Bart, den Hollander, Jan G, Handy, Rupert, Morales, Nilo Bonifacio, Hidalgo, Jose Alfredo, Infante, Rosa Mercedes, Matos Prado, Eduardo Demetrio, Campos, Pablo E, Ticona Chaves, Eduardo Romulo, Pinedo, Yvett, Pacheco, Patricia, Maltez, Fernando Manuel, Cunha, Jose, Neves, Isabel, Serrao, Rosario, Melendez-Rivera, Ivan, Mendoza-Rodriguez, Rafael O, Maldonado-Rivera, Sandra, Ortiz-Lasanta, Grisell, Kizhlo, Svetlana, Freud, Hernando Knobel, Moreno, Jose Sanz, Mendez, Francisco Vera, Mohapi, Lerato, Mitha, Essack Aziz, Mahomed, Akbar Anvar, Fouche, Leon Frederik, Kaplan, Richard, Siddique, Naeem, Hoosen, Farzana, Rassool, Mohammed Siddique, Baraldi, Ezio, Calmy, Alexandra, Cavassini, Matthias, Fehr, Jan, Tsai, Hung-Chin, Lin, Hsi-Hsun, Huang, Chun-Kai, Ko, Wen-Chien, Lin, Yu-Hui, Chen, Su-Jung, Hung, Chien-Ching, Avihingsanon, Anchalee, Kiertiburanakul, Sasisopin, Ratanasuwan, Winai, Supparatpinyo, Khuanchai, Chetchotisakd, Ploenchan, Changpradub, Dhitiwat, Orkin, Chloe, Fox, Ashini, Winston, Alan, Ustianowski, Andrew, Yangco, Bienvenido G, Asmuth, David Michael, Vigil, Karen J, Berger, Daniel S, Bhatti, Laveeza, Campbell, Thomas, Casey, Kathleen K, Liu, Edward, Crofoot, Gordon E, Cunningham, Douglas, Feinberg, Judith, Fichtenbaum, Carl, Balamban Felizarta, Franco Antonio, Jefferson, Thomas T, Johnson, Marc Alexander, Lewis, Stanley T, Luque, Amneris E, Novak, Richard M, Sloan, Louis, Sweet, Donna E, Towner, William J, Zane, Ryan, Riedel, David J, Loftus, Richard Anton, Shon, Alyssa So Young, Mogyoros, Miguel, Tebas, Pablo, Scott, Mia Louise, Parenti, David M, Inciarte Portillo, Alexy, Cahn, Pedro, Lombaard, Johannes, Kumar, Sushma, Campbell, Havilland, Wan, Hong, Teal, Valerie, Jin Xu, Zhi, Asante-Appiah, Ernest, Sklar, Peter, Teppler, Hedy, and Lahoulou, Rima
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- 2024
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12. Characterization of cooperative PS-oligo activation of human TLR9
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Adam J. Pollak, Luyi Zhao, and Stanley T. Crooke
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MT: Oligonucleotides: Therapies and Applications ,TLR9 ,PS-ASO ,CpG ,innate immunity ,receptor cooperativity ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Single-stranded phosphorothioate oligonucleotides (PS-oligos) can activate TLR9, leading to an innate immune response. This can occur with PS-oligos containing unmethylated CpG sites, the canonical motif, or PS-oligos that do not contain those motifs (non-CpG). Structural evidence shows that TLR9 contains two PS-oligo binding sites, and recent data suggest that synergistic cooperative activation of TLR9 can be achieved by adding two separate PS-oligos to cells, each engaging with a separate site on TLR9 to enhance TLR9 activation as a pair. Here, we demonstrate and characterize this cooperativity phenomenon using PS-oligos in human cell lines, and we introduce several novel PS-oligo pairs (CpG and non-CpG pairs) that show cooperative activation. Indeed, we find that cooperative PS-oligos likely bind at different sites on TLR9. Interestingly, we find that PS-oligos that generate little TLR9 activation on their own can prime TLR9 to be activated by other PS-oligos. Finally, we determine that previous models of TLR9 activation cannot be used to fully explain data from systems using human TLR9 and PS-oligos. Overall, we reveal new details of TLR9 activation, but we also find that more work needs to be done to determine where certain PS-oligos are binding to TLR9.
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- 2023
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13. A way forward for diagnosis of patients with extremely rare genetic mutations
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Crooke, Stanley T., Kim-McManus, Olivia S., and Dalby, Kelley
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- 2023
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14. Redesigning crop varieties to win the race between climate change and food security
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Pixley, Kevin V., Cairns, Jill E., Lopez-Ridaura, Santiago, Ojiewo, Chris O., Dawud, Maryam Abba, Drabo, Inoussa, Mindaye, Taye, Nebie, Baloua, Asea, Godfrey, Das, Biswanath, Daudi, Happy, Desmae, Haile, Batieno, Benoit Joseph, Boukar, Ousmane, Mukankusi, Clare T.M., Nkalubo, Stanley T., Hearne, Sarah J., Dhugga, Kanwarpal S., Gandhi, Harish, Snapp, Sieglinde, and Zepeda-Villarreal, Ernesto Adair
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- 2023
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15. Retrospective Median Power, False Positive Meta-Analysis and Large-Scale Replication
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Stanley, T. D., Doucouliagos, Hristos, and Ioannidis, John P. A.
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Recent, high-profile, large-scale, preregistered failures to replicate uncover that many highly-regarded experiments are "false positives"; that is, statistically significant results of underlying null effects. Large surveys of research reveal that statistical power is often low and inadequate. When the research record includes selective reporting, publication bias and/or questionable research practices, conventional meta-analyses are also likely to be falsely positive. At the core of research credibility lies the relation of statistical power to the rate of false positives. This study finds that high (>50%-60%) median retrospective power (MRP) is associated with credible meta-analysis and large-scale, preregistered, multi-lab "successful" replications; that is, with replications that corroborate the effect in question. When median retrospective power is low (<50%), positive meta-analysis findings should be interpreted with great caution or discounted altogether.
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- 2022
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16. Experimental and analytical investigation of solar radiant flux distribution on interior surfaces of a sunspace
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Liu, Stanley T.
- Published
- 1986
17. Thermal comfort conditions in the NBS/DoE direct gain passive solar test facility
- Author
-
Liu, Stanley T.
- Published
- 1982
18. Analytical and experimental study of evaporative cooling and room fire suppression by corridor sprinkler system
- Author
-
Liu, Stanley T.
- Published
- 1977
19. Analysis of construction systems for the thermal classification of residential buildings
- Author
-
Liu, Stanley T.
- Published
- 1975
20. Evaluation of ventilation requirements and energy consumption in existing New York City school buildings
- Author
-
Liu, Stanley T.
- Subjects
School buildings -- Energy consumption -- New York (State) -- New York. ,School buildings -- Heating and ventilation -- New York (State) -- New York. ,Constructions scolaires -- Chauffage et ventilation -- New York ( Etat) -- New York. ,School buildings -- Energy consumption. ,School buildings -- Heating and ventilation. - Published
- 1977
21. Characterization of cooperative PS-oligo activation of human TLR9
- Author
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Pollak, Adam J., Zhao, Luyi, and Crooke, Stanley T.
- Published
- 2023
- Full Text
- View/download PDF
22. First demonstration of ionization cooling by the Muon Ionization Cooling Experiment
- Author
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Bogomilov, M., Tsenov, R., Vankova-Kirilova, G., Song, Y. P., Tang, J. Y., Li, Z. H., Bertoni, R., Bonesini, M., Chignoli, F., Mazza, R., Palladino, V., de Bari, A., Orestano, D., Tortora, L., Kuno, Y., Sakamoto, H., Sato, A., Ishimoto, S., Chung, M., Sung, C. K., Filthaut, F., Jokovic, D., Maletic, D., Savic, M., Jovancevic, N., Nikolov, J., Vretenar, M., Ramberger, S., Asfandiyarov, R., Blondel, A., Drielsma, F., Karadzhov, Y., Charnley, G., Collomb, N., Dumbell, K., Gallagher, A., Grant, A., Griffiths, S., Hartnett, T., Martlew, B., Moss, A., Muir, A., Mullacrane, I., Oates, A., Owens, P., Stokes, G., Warburton, P., White, C., Adams, D., Bayliss, V., Boehm, J., Bradshaw, T. W., Brown, C., Courthold, M., Govans, J., Hills, M., Lagrange, J. -B., Macwaters, C., Nichols, A., Preece, R., Ricciardi, S., Rogers, C., Stanley, T., Tarrant, J., Tucker, M., Watson, S., Wilson, A., Bayes, R., Nugent, J. C., Soler, F. J. P., Gamet, R., Cooke, P., Blackmore, V. J., Colling, D., Dobbs, A., Dornan, P., Franchini, P., Hunt, C., Jurj, P. B., Kurup, A., Long, K., Martyniak, J., Middleton, S., Pasternak, J., Uchida, M. A., Cobb, J. H., Booth, C. N., Hodgson, P., Langlands, J., Overton, E., Pec, V., Smith, P. J., Wilbur, S., Chatzitheodoridis, G. T., Dick, A. J., Ronald, K., Whyte, C. G., Young, A. R., Boyd, S., Greis, J. R., Lord, T., Pidcott, C., Taylor, I., Ellis, M., Gardener, R. B. S., Kyberd, P., Nebrensky, J. J., Palmer, M., Witte, H., Adey, D., Bross, A. D., Bowring, D., Hanlet, P., Liu, A., Neuffer, D., Popovic, M., Rubinov, P., DeMello, A., Gourlay, S., Lambert, A., Li, D., Luo, T., Prestemon, S., Virostek, S., Freemire, B., Kaplan, D. M., Mohayai, T. A., Snopok, P., Torun, Y., Cremaldi, L. M., Sanders, D. A., Summers, D. J., Coney, L. R., Hanson, G. G., and Heidt, C.
- Subjects
Physics - Accelerator Physics ,High Energy Physics - Experiment - Abstract
High-brightness muon beams of energy comparable to those produced by state-of-the-art electron, proton and ion accelerators have yet to be realised. Such beams have the potential to carry the search for new phenomena in lepton-antilepton collisions to extremely high energy and also to provide uniquely well-characterised neutrino beams. A muon beam may be created through the decay of pions produced in the interaction of a proton beam with a target. To produce a high-brightness beam from such a source requires that the phase space volume occupied by the muons be reduced (cooled). Ionization cooling is the novel technique by which it is proposed to cool the beam. The Muon Ionization Cooling Experiment collaboration has constructed a section of an ionization cooling cell and used it to provide the first demonstration of ionization cooling. We present these ground-breaking measurements., Comment: 19 pages and 6 figures
- Published
- 2019
23. Demonstration of cooling by the Muon Ionization Cooling Experiment
- Author
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Bogomilov, M, Tsenov, R, Vankova-Kirilova, G, Song, YP, Tang, JY, Li, ZH, Bertoni, R, Bonesini, M, Chignoli, F, Mazza, R, Palladino, V, de Bari, A, Orestano, D, Tortora, L, Kuno, Y, Sakamoto, H, Sato, A, Ishimoto, S, Chung, M, Sung, CK, Filthaut, F, Jokovic, D, Maletic, D, Savic, M, Jovancevic, N, Nikolov, J, Vretenar, M, Ramberger, S, Asfandiyarov, R, Blondel, A, Drielsma, F, Karadzhov, Y, Boyd, S, Greis, JR, Lord, T, Pidcott, C, Taylor, I, Charnley, G, Collomb, N, Dumbell, K, Gallagher, A, Grant, A, Griffiths, S, Hartnett, T, Martlew, B, Moss, A, Muir, A, Mullacrane, I, Oates, A, Owens, P, Stokes, G, Warburton, P, White, C, Adams, D, Bayliss, V, Boehm, J, Bradshaw, TW, Brown, C, Courthold, M, Govans, J, Hills, M, Lagrange, J-B, Macwaters, C, Nichols, A, Preece, R, Ricciardi, S, Rogers, C, Stanley, T, Tarrant, J, Tucker, M, Watson, S, Wilson, A, Bayes, R, Nugent, JC, Soler, FJP, Chatzitheodoridis, GT, Dick, AJ, Ronald, K, Whyte, CG, Young, AR, Gamet, R, Cooke, P, Blackmore, VJ, Colling, D, Dobbs, A, Dornan, P, Franchini, P, Hunt, C, Jurj, PB, Kurup, A, Long, K, Martyniak, J, Middleton, S, Pasternak, J, Uchida, MA, Cobb, JH, Booth, CN, Hodgson, P, Langlands, J, and Overton, E
- Subjects
Nuclear and Plasma Physics ,Particle and High Energy Physics ,Synchrotrons and Accelerators ,Physical Sciences ,MICE collaboration ,ATAP-2020 ,ATAP-GENERAL ,ATAP-BACI ,General Science & Technology - Abstract
The use of accelerated beams of electrons, protons or ions has furthered the development of nearly every scientific discipline. However, high-energy muon beams of equivalent quality have not yet been delivered. Muon beams can be created through the decay of pions produced by the interaction of a proton beam with a target. Such 'tertiary' beams have much lower brightness than those created by accelerating electrons, protons or ions. High-brightness muon beams comparable to those produced by state-of-the-art electron, proton and ion accelerators could facilitate the study of lepton-antilepton collisions at extremely high energies and provide well characterized neutrino beams1-6. Such muon beams could be realized using ionization cooling, which has been proposed to increase muon-beam brightness7,8. Here we report the realization of ionization cooling, which was confirmed by the observation of an increased number of low-amplitude muons after passage of the muon beam through an absorber, as well as an increase in the corresponding phase-space density. The simulated performance of the ionization cooling system is consistent with the measured data, validating designs of the ionization cooling channel in which the cooling process is repeated to produce a substantial cooling effect9-11. The results presented here are an important step towards achieving the muon-beam quality required to search for phenomena at energy scales beyond the reach of the Large Hadron Collider at a facility of equivalent or reduced footprint6.
- Published
- 2020
24. Detecting Publication Selection Bias through Excess Statistical Significance
- Author
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Stanley, T. D., Doucouliagos, Hristos, Ioannidis, John P. A., and Carter, Evan C.
- Abstract
We introduce and evaluate three tests for publication selection bias based on excess statistical significance (ESS). The proposed tests incorporate heterogeneity explicitly in the formulas for expected and ESS. We calculate the expected proportion of statistically significant findings in the absence of selective reporting or publication bias based on each study's SE and meta-analysis estimates of the mean and variance of the true-effect distribution. A simple proportion of statistical significance test (PSST) compares the expected to the observed proportion of statistically significant findings. Alternatively, we propose a direct test of excess statistical significance (TESS). We also combine these two tests of excess statistical significance (TESSPSST). Simulations show that these ESS tests often outperform the conventional Egger test for publication selection bias and the three-parameter selection model (3PSM).
- Published
- 2021
- Full Text
- View/download PDF
25. Test Anxiety and Academic Stress as Predictors of Secondary School Students` Academic Achievement in Physics
- Author
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Okeke Agnes O., Ocheni Christopher A., Oguguo Basil C. E., and Asongo Stanley T.
- Subjects
science ,physics ,academic achievement ,test anxiety ,academic stress ,Education (General) ,L7-991 - Abstract
Test anxiety and academic stress were investigated as predictors of students’ academic progress in Physics in this study. A correlational research design was used. The study was guided by three research questions and three null hypotheses. The research was conducted in Education Zon C, Benue State, Nigeria. The study’s population consisted of 2692 SS II Physics students from public schools in the area. The study used a sample of 337 students drawn using simple random sampling. For data collection, the researchers employed the Physics Test Anxiety Inventory (PTAI) adapted from Spielberger (1980), the Physics Academic Stress Scale (PASS) adapted from Burge (2009), and the Physics Achievement Test (PAT) designed by the researchers. Four specialists faced validated the instruments. Using the Cronbach alpha approach, the reliability of the PTAI and PASS were estimated to be 0.73 and 0.84, respectively, while the reliability of the PAT was estimated to be 0.76 using the KR-20 formula. Regression analysis was utilized to answer the study questions, while ANOVA was employed to test the hypotheses made at the 0.05 level of significance. The result revealed that the proportion of variation students’ achievement in Physics that may be attributable to test anxiety and academic stress, is independently and jointly significant. Based on this conclusion, it was suggested that adequate learning resources, as well as a functioning and suitable learning environment, be made available in order for students to learn effectively. This will help them to be mentally ready for any form of testing or examinations.
- Published
- 2022
- Full Text
- View/download PDF
26. First particle-by-particle measurement of emittance in the Muon Ionization Cooling Experiment
- Author
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The MICE Collaboration, Adams, D., Adey, D., Asfandiyarov, R., Barber, G., de Bari, A., Bayes, R., Bayliss, V., Bertoni, R., Blackmore, V., Blondel, A., Boehm, J., Bogomilov, M., Bonesini, M., Booth, C. N., Bowring, D., Boyd, S., Bradshaw, T. W., Bross, A. D., Brown, C., Coney, L., Charnley, G., Chatzitheodoridis, G. T., Chignoli, F., Chung, M., Cline, D., Cobb, J. H., Colling, D., Collomb, N., Cooke, P., Courthold, M., Cremaldi, L. M., DeMello, A., Dick, A. J., Dobbs, A., Dornan, P., Drielsma, F., Dumbell, K., Ellis, M., Filthaut, F., Franchini, P., Freemire, B., Gallagher, A., Gamet, R., Gardener, R. B. S., Gourlay, S., Grant, A., Greis, J. R., Griffiths, S., Hanlet, P., Hanson, G. G., Hartnett, T., Heidt, C., Hodgson, P., Hunt, C., Ishimoto, S., Jokovic, D., Jurj, P. B., Kaplan, D. M., Karadzhov, Y., Klier, A., Kuno, Y., Kurup, A., Kyberd, P., Lagrange, J-B., Langlands, J., Lau, W., Li, D., Li, Z., Liu, A., Long, K., Lord, T., Macwaters, C., Maletic, D., Martlew, B., Martyniak, J., Mazza, R., Middleton, S., Mohayai, T. A., Moss, A., Muir, A., Mullacrane, I., Nebrensky, J. J., Neuffer, D., Nichols, A., Nugent, J. C., Oates, A., Orestano, D., Overton, E., Owens, P., Palladino, V., Palmer, M., Pasternak, J., Pec, V., Pidcott, C., Popovic, M., Preece, R., Prestemon, S., Rajaram, D., Ricciardi, S., Robinson, M., Rogers, C., Ronald, K., Rubinov, P., Sakamoto, H., Sanders, D. A., Sato, A., Savic, M., Snopok, P., Smith, P. J., Soler, F. J. P., Song, Y., Stanley, T., Stokes, G., Suezaki, V., Summers, D. J., Sung, C. K., Tang, J., Tarrant, J., Taylor, I., Tortora, L., Torun, Y., Tsenov, R., Tucker, M., Uchida, M. A., Virostek, S., Vankova-Kirilova, G., Warburton, P., Wilbur, S., Wilson, A., Witte, H., White, C., Whyte, C. G., Yang, X., Young, A. R., and Zisman, M.
- Subjects
Physics - Accelerator Physics ,Physics - Instrumentation and Detectors - Abstract
The Muon Ionization Cooling Experiment (MICE) collaboration seeks to demonstrate the feasibility of ionization cooling, the technique by which it is proposed to cool the muon beam at a future neutrino factory or muon collider. The emittance is measured from an ensemble of muons assembled from those that pass through the experiment. A pure muon ensemble is selected using a particle-identification system that can reject efficiently both pions and electrons. The position and momentum of each muon are measured using a high-precision scintillating-fibre tracker in a 4\,T solenoidal magnetic field. This paper presents the techniques used to reconstruct the phase-space distributions and reports the first particle-by-particle measurement of the emittance of the MICE Muon Beam as a function of muon-beam momentum.
- Published
- 2018
- Full Text
- View/download PDF
27. The Sustained Induction of c-MYC Drives Nab-Paclitaxel Resistance in Primary Pancreatic Ductal Carcinoma Cells
- Author
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Parasido, Erika, Avetian, George S, Naeem, Aisha, Graham, Garrett, Pishvaian, Michael, Glasgow, Eric, Mudambi, Shaila, Lee, Yichien, Ihemelandu, Chukwuemeka, Choudhry, Muhammad, Peran, Ivana, Banerjee, Partha P, Avantaggiati, Maria Laura, Bryant, Kirsten, Baldelli, Elisa, Pierobon, Mariaelena, Liotta, Lance, Petricoin, Emanuel, Fricke, Stanley T, Sebastian, Aimy, Cozzitorto, Joseph, Loots, Gabriela G, Kumar, Deepak, Byers, Stephen, Londin, Eric, DiFeo, Analisa, Narla, Goutham, Winter, Jordan, Brody, Jonathan R, Rodriguez, Olga, and Albanese, Chris
- Subjects
Cancer ,Pancreatic Cancer ,Digestive Diseases ,Orphan Drug ,Rare Diseases ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Aged ,Aged ,80 and over ,Albumins ,Animals ,Carcinoma ,Pancreatic Ductal ,Drug Resistance ,Neoplasm ,Female ,Gene Expression Regulation ,Neoplastic ,Humans ,Male ,Mice ,Neoplasm Transplantation ,Paclitaxel ,Pancreatic Neoplasms ,Primary Cell Culture ,Proto-Oncogene Proteins c-myc ,Tumor Cells ,Cultured ,Up-Regulation ,Zebrafish ,Oncology and Carcinogenesis ,Developmental Biology ,Oncology & Carcinogenesis - Abstract
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive disease with limited and, very often, ineffective medical and surgical therapeutic options. The treatment of patients with advanced unresectable PDAC is restricted to systemic chemotherapy, a therapeutic intervention to which most eventually develop resistance. Recently, nab-paclitaxel (n-PTX) has been added to the arsenal of first-line therapies, and the combination of gemcitabine and n-PTX has modestly prolonged median overall survival. However, patients almost invariably succumb to the disease, and little is known about the mechanisms underlying n-PTX resistance. Using the conditionally reprogrammed (CR) cell approach, we established and verified continuously growing cell cultures from treatment-naïve patients with PDAC. To study the mechanisms of primary drug resistance, nab-paclitaxel-resistant (n-PTX-R) cells were generated from primary cultures and drug resistance was verified in vivo, both in zebrafish and in athymic nude mouse xenograft models. Molecular analyses identified the sustained induction of c-MYC in the n-PTX-R cells. Depletion of c-MYC restored n-PTX sensitivity, as did treatment with either the MEK inhibitor, trametinib, or a small-molecule activator of protein phosphatase 2a. IMPLICATIONS: The strategies we have devised, including the patient-derived primary cells and the unique, drug-resistant isogenic cells, are rapid and easily applied in vitro and in vivo platforms to better understand the mechanisms of drug resistance and for defining effective therapeutic options on a patient by patient basis.
- Published
- 2019
28. Integrated Assessment of the Clinical Performance of GalNAc3-Conjugated 2′-O-Methoxyethyl Chimeric Antisense Oligonucleotides: I. Human Volunteer Experience
- Author
-
Crooke, Stanley T, Baker, Brenda F, Xia, Shuting, Yu, Rosie Z, Viney, Nicholas J, Wang, Yanfeng, Tsimikas, Sotirios, and Geary, Richard S
- Subjects
Biological Sciences ,5.2 Cellular and gene therapies ,Development of treatments and therapeutic interventions ,Acetylgalactosamine ,Asialoglycoprotein Receptor ,Biomarkers ,Pharmacological ,Dose-Response Relationship ,Drug ,Female ,Healthy Volunteers ,Hepatocytes ,Humans ,Male ,Middle Aged ,Oligonucleotides ,Antisense ,Phosphorothioate Oligonucleotides ,RNA ,Structure-Activity Relationship ,antisense ,oligonucleotide ,assessment ,clinical trials ,triantennary N-acetylgalactosamine ,triantennary -acetylgalactosamine ,Technology ,Biochemistry & Molecular Biology ,Pharmacology & Pharmacy ,Biological sciences - Abstract
Advances in medicinal chemistry have produced new chemical classes of antisense oligonucleotides (ASOs) with enhanced therapeutic properties. Conjugation of the triantennary N-acetylgalactosamine (GalNAc3) moiety to the extensively characterized phosphorothioate (PS)-modified 2'-O-methoxyethyl (2'MOE) ASO exemplifies such an advance. This structure-activity optimized moiety effects receptor-mediated uptake of the ASO prodrug through the asialoglycoprotein receptor 1 to support selective targeting of RNAs expressed by hepatocytes. In this study we report the integrated assessment of data available from randomized placebo-controlled dose-ranging studies of this chemical class of ASOs administered systemically to healthy human volunteers. First, we compare the pharmacokinetic and pharmacodynamic profiles of a subset of the GalNAc3-conjugated PS-modified 2'MOE ASOs to the parent PS-modified 2'MOE ASOs for which plasma analytes are available. We then evaluate the safety profile of the full set of GalNAc3-conjugated PS-modified 2'MOE ASO conjugates by the incidence of signals in standardized laboratory tests and by the mean laboratory test results as a function of dose level over time. With hepatocyte targeted delivery, the ED50 for the GalNAc3-conjugated PS-modified 2'MOE ASO subset ranges from 4 to 10 mg/week, up to 30-fold more potent than the parent PS-modified 2'MOE ASO. No GalNAc3-conjugated PS-modified 2'MOE ASO class effects were identified from the assessment of the integrated laboratory test data across all doses tested with either single or multidose regimens. The increase in potency supports an increase in the safety margin for this new chemical class of ASOs now under broad investigation in the clinic. Although the total exposure is limited in the initial phase 1 trials, ongoing and future investigations in patient populations will support evaluation of the effects of long-term exposure.
- Published
- 2019
29. Position-Aware Anti-Aliasing Filters for 3D Medical Image Analysis.
- Author
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Stanley T. Yu and Hong-Yu Zhou
- Published
- 2022
- Full Text
- View/download PDF
30. RNA modifications can affect RNase H1-mediated PS-ASO activity
- Author
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Katelyn A. Doxtader Lacy, Xue-hai Liang, Lingdi Zhang, and Stanley T. Crooke
- Subjects
MT: Oligonucleotides: Therapies and Applications ,RNase H1 ,RNA modification ,antisense oligonucleotide ,cleavage ,structure ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Phosphorothioate modified antisense oligonucleotides (PS-ASOs) can reduce gene expression through hybridization to target RNAs and subsequent cleavage by RNase H1. Target reduction through this mechanism is influenced by numerous features of the RNA, which modulate PS-ASO binding affinities to the RNA target, and how the PS-ASO-RNA hybrid is recognized by RNase H1 for RNA cleavage. Endogenous RNAs are frequently chemically modified, which can regulate intra- and intermolecular interactions of the RNA. The effects of PS-ASO modifications on antisense activity have been well studied; however, much less is known regarding the effects of RNA modifications on PS-ASO hybridization and RNase H1 cleavage activity. Here, we determine the effects of three different RNA modifications on PS-ASO binding and antisense activity in recombinant and cell-based systems. Some RNA modifications can reduce PS-ASO hybridization, the cleavage activity of RNase H1, or both, while other modifications had minimal effects on PS-ASO function. In addition to these direct effects, RNA modifications can also change the RNA structure, which may affect PS-ASO accessibility in a cellular context. Our results elucidate the effects of three prevalent RNA modifications on PS-ASO-mediated RNase H1 cleavage activity, and such findings will help improve PS-ASO target site selection.
- Published
- 2022
- Full Text
- View/download PDF
31. RNA modifications can affect RNase H1-mediated PS-ASO activity
- Author
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Doxtader Lacy, Katelyn A., Liang, Xue-hai, Zhang, Lingdi, and Crooke, Stanley T.
- Published
- 2022
- Full Text
- View/download PDF
32. Personalized antisense oligonucleotides ‘for free, for life’ — the n-Lorem Foundation
- Author
-
Gleeson, Joseph G., Bennett, C. Frank, Carroll, Jeffrey B., Cole, Tracy, Douville, Julie, Glass, Sarah, Tekendo-Ngongang, Cedrik, Williford, Amy C., and Crooke, Stanley T.
- Published
- 2023
- Full Text
- View/download PDF
33. RF system for the MICE demonstration of ionization cooling
- Author
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Ronald, K., Whyte, C. G., Dick, A. J., Young, A. R., Li, D., DeMello, A. J., Lambert, A. R., Luo, T., Anderson, T., Bowring, D., Bross, A., Moretti, A., Pasquinelli, R., Peterson, D., Popovic, M., Schultz, R., Volk, J., Torun, Y., Hanlet, P., Freemire, B., Moss, A., Dumbell, K., Grant, A., White, C., Griffiths, S., Stanley, T., Anderson, R., Alsari, S., Long, K., Kurup, A., Summers, D., and Smith, P. J.
- Subjects
Physics - Accelerator Physics - Abstract
Muon accelerators offer an attractive option for a range of future particle physics experiments. They can enable high energy (TeV+) high energy lepton colliders whilst mitigating the difficulty of synchrotron losses, and can provide intense beams of neutrinos for fundamental physics experiments investigating the physics of flavor. The method of production of muon beams results in high beam emittance which must be reduced for efficient acceleration. Conventional emittance control schemes take too long, given the very short (2.2 microsecond) rest lifetime of the muon. Ionisation cooling offers a much faster approach to reducing particle emittance, and the international MICE collaboration aims to demonstrate this technique for the first time. This paper will present the MICE RF system and its role in the context of the overall experiment., Comment: 2 pp
- Published
- 2017
34. Design and expected performance of the MICE demonstration of ionization cooling
- Author
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MICE Collaboration, Bogomilov, M., Tsenov, R., Vankova-Kirilova, G., Song, Y., Tang, J., Li, Z., Bertoni, R., Bonesini, M., Chignoli, F., Mazza, R., Palladino, V., de Bari, A., Cecchet, G., Orestano, D., Tortora, L., Kuno, Y., Ishimoto, S., Filthaut, F., Jokovic, D., Maletic, D., Savic, M., Hansen, O. M., Ramberger, S., Vretenar, M., Asfandiyarov, R., Blondel, A., Drielsma, F., Karadzhov, Y., Charnley, G., Collomb, N., Gallagher, A., Grant, A., Griffiths, S., Hartnett, T., Martlew, B., Moss, A., Muir, A., Mullacrane, I., Oates, A., Owens, P., Stokes, G., Tucker, M., Warburton, P., White, C., Adams, D., Anderson, R. J., Barclay, P., Bayliss, V., Boehm, J., Bradshaw, T. W., Courthold, M., Dumbell, K., Francis, V., Fry, L., Hayler, T., Hills, M., Lintern, A., Macwaters, C., Nichols, A., Preece, R., Ricciardi, S., Rogers, C., Stanley, T., Tarrant, J., Wilson, A., Watson, S., Bayes, R., Nugent, J. C., Soler, F. J. P., Gamet, R., Barber, G., Blackmore, V. J., Colling, D., Dobbs, A., Dornan, P., Hunt, C., Kurup, A., Lagrange, J-B., Long, K., Martyniak, J., Middleton, S., Pasternak, J., Uchida, M. A., Cobb, J. H., Lau, W., Booth, C. N., Hodgson, P., Langlands, J., Overton, E., Robinson, M., Smith, P. J., Wilbur, S., Dick, A. J., Ronald, K., Whyte, C. G., Young, A. R., Boyd, S., Franchini, P., Greis, J. R., Pidcott, C., Taylor, I., Gardener, R. B. S., Kyberd, P., Nebrensky, J. J., Palmer, M., Witte, H., Bross, A. D., Bowring, D., Liu, A., Neuffer, D., Popovic, M., Rubinov, P., DeMello, A., Gourlay, S., Li, D., Prestemon, S., Virostek, S., Freemire, B., Hanlet, P., Kaplan, D. M., Mohayai, T. A., Rajaram, D., Snopok, P., Suezaki, V., Torun, Y., Onel, Y., Cremaldi, L. M., Sanders, D. A., Summers, D. J., Hanson, G. G., and Heidt, C.
- Subjects
Physics - Accelerator Physics - Abstract
Muon beams of low emittance provide the basis for the intense, well-characterised neutrino beams necessary to elucidate the physics of flavour at a neutrino factory and to provide lepton-antilepton collisions at energies of up to several TeV at a muon collider. The international Muon Ionization Cooling Experiment (MICE) aims to demonstrate ionization cooling, the technique by which it is proposed to reduce the phase-space volume occupied by the muon beam at such facilities. In an ionization-cooling channel, the muon beam passes through a material in which it loses energy. The energy lost is then replaced using RF cavities. The combined effect of energy loss and re-acceleration is to reduce the transverse emittance of the beam (transverse cooling). A major revision of the scope of the project was carried out over the summer of 2014. The revised experiment can deliver a demonstration of ionization cooling. The design of the cooling demonstration experiment will be described together with its predicted cooling performance., Comment: 21 pages, 10 figures
- Published
- 2017
- Full Text
- View/download PDF
35. Selective and (mis)leading economics journals: Meta‐research evidence.
- Author
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Askarov, Zohid, Doucouliagos, Anthony, Doucouliagos, Hristos, and Stanley, T. D.
- Subjects
STATISTICAL power analysis ,STATISTICAL significance ,EXPERIMENTAL economics ,ECONOMIC research - Abstract
We assess statistical power and excess statistical significance among 31 leading economics general interest and field journals using 22,281 parameter estimates from 368 distinct areas of economics research. Median statistical power in leading economics journals is very low (only 7%), and excess statistical significance is quite high (19%). Power this low and excess significance this high raise serious doubts about the credibility of economics research. We find that 26% of all reported results have undergone some process of selection for statistical significance and 56% of statistically significant results were selected to be statistically significant. Selection bias is greater at the top five journals, where 66% of statistically significant results were selected to be statistically significant. A large majority of empirical evidence reported in leading economics journals is potentially misleading. Results reported to be statistically significant are about as likely to be misleading as not (falsely positive) and statistically nonsignificant results are much more likely to be misleading (falsely negative). We also compare observational to experimental research and find that the quality of experimental economic evidence is notably higher. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
36. Meta‐analysis of social science research: A practitioner's guide.
- Author
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Irsova, Zuzana, Doucouliagos, Hristos, Havranek, Tomas, and Stanley, T. D.
- Subjects
ARTIFICIAL intelligence ,PUBLICATION bias ,SOCIAL science research ,HETEROGENEITY - Abstract
This article provides concise, nontechnical, step‐by‐step guidelines on how to conduct a modern meta‐analysis, especially in social sciences. We treat publication bias, p‐hacking, and systematic heterogeneity as phenomena meta‐analysts must always confront. To this end, we provide concrete methodological recommendations. Meta‐analysis methods have advanced notably over the last few years. Yet many meta‐analyses still rely on outdated approaches, some ignoring publication bias and systematic heterogeneity. While limitations persist, recently developed techniques allow robust inference even in the face of formidable problems in the underlying empirical literature. The purpose of this paper is to summarize the state of the art in a way accessible to aspiring meta‐analysts in any field. We also discuss how meta‐analysts can use advances in artificial intelligence to work more efficiently. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
37. Attribute Relation Modeling for Pulmonary Nodule Malignancy Reasoning.
- Author
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Stanley T. Yu and Gangming Zhao
- Published
- 2021
- Full Text
- View/download PDF
38. Meeting the needs of patients with ultrarare diseases
- Author
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Crooke, Stanley T.
- Published
- 2022
- Full Text
- View/download PDF
39. RF system for the MICE demonstration of ionisation cooling
- Author
-
Ronald, K, Whyte, CG, Dick, AJ, Young, AR, Li, D, Demello, AJ, Lambert, AR, Luo, T, Anderson, T, Bowring, D, Bross, A, Moretti, A, Pasquinelli, R, Peterson, D, Popovic, M, Schultz, R, Volk, J, Torun, Y, Hanlet, P, Freemire, B, Moss, A, Dumbell, K, Grant, A, White, C, Griffiths, S, Stanley, T, Anderson, R, Alsari, S, Long, K, Kurup, A, Summers, D, and Smith, PJ
- Subjects
muon accelerators ,ionisation cooling ,RF accelerators ,diagnostics ,physics.acc-ph - Abstract
Muon accelerators offer an attractive option for a range of future particle physics experiments. They can enable high energy (TeV+) high energy lepton colliders whilst mitigating the difficulty of synchrotron losses, and can provide intense beams of neutrinos for fundamental physics experiments investigating the physics of flavor. The method of production of muon beams results in high beam emittance which must be reduced for efficient acceleration. Conventional emittance control schemes take too long, given the very short (2.2 microsecond) rest lifetime of the muon. Ionisation cooling offers a much faster approach to reducing particle emittance, and the international MICE collaboration aims to demonstrate this technique for the first time. This paper will present the MICE RF system and its role in the context of the overall experiment.
- Published
- 2018
40. The Effects of 2′-O-Methoxyethyl Oligonucleotides on Renal Function in Humans
- Author
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Crooke, Stanley T, Baker, Brenda F, Pham, Nguyen C, Hughes, Steven G, Kwoh, T Jesse, Cai, Danlin, Tsimikas, Sotirios, Geary, Richard S, and Bhanot, Sanjay
- Subjects
Biological Sciences ,Clinical Research ,Clinical Trials and Supportive Activities ,Kidney Disease ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Renal and urogenital ,Adult ,Apolipoproteins ,Clinical Trials ,Phase II as Topic ,Clinical Trials ,Phase III as Topic ,Creatinine ,Diabetes Mellitus ,Factor XI ,Female ,Glomerular Filtration Rate ,Humans ,Hyperlipidemias ,Male ,Middle Aged ,Obesity ,Oligonucleotides ,Antisense ,Patient Safety ,Protein Tyrosine Phosphatases ,Non-Receptor ,Randomized Controlled Trials as Topic ,Receptor Protein-Tyrosine Kinases ,Receptors ,Glucocorticoid ,Thrombosis ,antisense ,oligonucleotide ,kidney ,safety ,clinical trials ,humans ,Technology ,Biochemistry & Molecular Biology ,Pharmacology & Pharmacy ,Biological sciences - Abstract
Systemically administered 2'-O-methoxyethyl (2'MOE) antisense oligonucleotides (ASOs) accumulate in the kidney and metabolites are cleared in urine. The effects of eleven 2'MOE ASOs on renal function were assessed in 2,435 patients from 32 phase 2 and phase 3 trials. The principle analysis was on data from 28 randomized placebo-controlled trials. Mean levels of renal parameters remained within normal ranges over time across dose groups. Patient-level meta-analyses demonstrated a significant difference between placebo-treated and 2'MOE ASO-treated patients at doses >175 mg/week in the percentage and absolute change from baseline for serum creatinine and estimated glomerular filtration rate. However, these changes were not clinically significant or progressive. No dose-related effects were observed in the incidence of abnormal renal test results in the total population of patients, or subpopulation of diabetic patients or patients with renal dysfunction at baseline. The incidence of acute kidney injury [serum creatinine ≥0.3 mg/dL (26.5 μM) increases from baseline or ≥1.5 × baseline] in 2'MOE ASO-treated patients (2.4%) was not statistically different from placebo (1.7%, P = 0.411). In conclusion, in this database, encompassing 32 clinical trials and 11 different 2'MOE ASOs, we found no evidence of clinically significant renal dysfunction up to 52 weeks of randomized-controlled treatment.
- Published
- 2018
41. Conventional wisdom, meta‐analysis, and research revision in economics
- Author
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Gechert, Sebastian, primary, Mey, Bianka, additional, Opatrny, Matej, additional, Havranek, Tomas, additional, Stanley, T. D., additional, Bom, Pedro R. D., additional, Doucouliagos, Hristos, additional, Heimberger, Philipp, additional, Irsova, Zuzana, additional, and Rachinger, Heiko J., additional
- Published
- 2024
- Full Text
- View/download PDF
42. Involving Stakeholders’ Knowledge in Co-designing Social Valuations of Biodiversity and Ecosystem Services : Implications for Decision-Making
- Author
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Asah, Stanley T. and Blahna, Dale J.
- Published
- 2020
43. Investigating the potential of a global precipitation forecast to inform landslide prediction
- Author
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Khan, S., Kirschbaum, D.B., and Stanley, T.
- Published
- 2021
- Full Text
- View/download PDF
44. Antisense drug discovery and development technology considered in a pharmacological context
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Crooke, Stanley T., Liang, Xue-hai, Crooke, Rosanne M., Baker, Brenda F., and Geary, Richard S.
- Published
- 2021
- Full Text
- View/download PDF
45. Progress in molecular biology and translational science addressing the needs of nano-rare patients
- Author
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Crooke, Stanley T., primary
- Published
- 2022
- Full Text
- View/download PDF
46. Lattice design and expected performance of the Muon Ionization Cooling Experiment demonstration of ionization cooling
- Author
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Bogomilov, M, Tsenov, R, Vankova-Kirilova, G, Song, Y, Tang, J, Li, Z, Bertoni, R, Bonesini, M, Chignoli, F, Mazza, R, Palladino, V, De Bari, A, Cecchet, G, Orestano, D, Tortora, L, Kuno, Y, Ishimoto, S, Filthaut, F, Jokovic, D, Maletic, D, Savic, M, Hansen, OM, Ramberger, S, Vretenar, M, Asfandiyarov, R, Blondel, A, Drielsma, F, Karadzhov, Y, Charnley, G, Collomb, N, Dumbell, K, Gallagher, A, Grant, A, Griffiths, S, Hartnett, T, Martlew, B, Moss, A, Muir, A, Mullacrane, I, Oates, A, Owens, P, Stokes, G, Warburton, P, White, C, Adams, D, Anderson, RJ, Barclay, P, Bayliss, V, Boehm, J, Bradshaw, TW, Courthold, M, Francis, V, Fry, L, Hayler, T, Hills, M, Lintern, A, Macwaters, C, Nichols, A, Preece, R, Ricciardi, S, Rogers, C, Stanley, T, Tarrant, J, Tucker, M, Wilson, A, Watson, S, Bayes, R, Nugent, JC, Soler, FJP, Gamet, R, Barber, G, Blackmore, VJ, Colling, D, Dobbs, A, Dornan, P, Hunt, C, Kurup, A, Lagrange, JB, Long, K, Martyniak, J, Middleton, S, Pasternak, J, Uchida, MA, Cobb, JH, Lau, W, Booth, CN, Hodgson, P, Langlands, J, Overton, E, Robinson, M, Smith, PJ, Wilbur, S, Dick, AJ, Ronald, K, Whyte, CG, Young, AR, Boyd, S, Franchini, P, Greis, JR, and Pidcott, C
- Subjects
physics.acc-ph - Abstract
Muon beams of low emittance provide the basis for the intense, well-characterized neutrino beams necessary to elucidate the physics of flavor at a neutrino factory and to provide lepton-antilepton collisions at energies of up to several TeV at a muon collider. The international Muon Ionization Cooling Experiment (MICE) aims to demonstrate ionization cooling, the technique by which it is proposed to reduce the phase-space volume occupied by the muon beam at such facilities. In an ionization-cooling channel, the muon beam passes through a material in which it loses energy. The energy lost is then replaced using rf cavities. The combined effect of energy loss and reacceleration is to reduce the transverse emittance of the beam (transverse cooling). A major revision of the scope of the project was carried out over the summer of 2014. The revised experiment can deliver a demonstration of ionization cooling. The design of the cooling demonstration experiment will be described together with its predicted cooling performance.
- Published
- 2017
47. RF System for the MICE Demonstration of Ionisation Cooling
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Ronald, K, Whyte, CG, Dick, AJ, Young, AR, Moss, A, Dumbell, K, Grant, A, White, C, Griffiths, S, Stanley, T, Anderson, R, Li, D, DeMello, AJ, Lambert, AR, Luo, T, Alsari, S, Long, K, Kurup, A, Anderson, T, Bowring, D, Bross, A, Moretti, A, Pasquinelli, R, Peterson, D, Popovic, M, Schultz, R, Volk, J, Summers, D, Torun, Y, Hanlet, P, Freemire, B, and Smith, PJ
- Subjects
Nuclear and Plasma Physics ,Particle and High Energy Physics ,Synchrotrons and Accelerators ,Physical Sciences ,muon accelerators ,ionisation cooling ,RF accelerators ,diagnostics ,physics.acc-ph - Abstract
Muon accelerators offer an attractive option for a range of future particle physics experiments. They can enable high energy (TeV+) high energy lepton colliders whilst mitigating the difficulty of synchrotron losses, and can provide intense beams of neutrinos for fundamental physics experiments investigating the physics of flavor. The method of production of muon beams results in high beam emittance which must be reduced for efficient acceleration. Conventional emittance control schemes take too long, given the very short (2.2 microsecond) rest lifetime of the muon. Ionisation cooling offers a much faster approach to reducing particle emittance, and the international MICE collaboration aims to demonstrate this technique for the first time. This paper will present the MICE RF system and its role in the context of the overall experiment.
- Published
- 2017
48. An Evaluation of Risk Attitudes and Risk Tolerance in Emergency Medicine Residents
- Author
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Papanagnou, D, Buttar, S, Rahman, N, Stanley, T, Governatori, N, Piela, N, Chandra, S, Naples, R, London, K, and Hall, R
- Published
- 2017
49. Use of the ZDF rat to model dietary fat induced hypercoagulability is limited by progressive and fatal nephropathy
- Author
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Pugsley, Michael K., Brooks, Marjory B., Fishman, Cindy E., Katavolos, Paula, Chiang, Alan Y., Parish, Stanley T., Pierson, Jennifer B., and Schultze, Albert E.
- Published
- 2021
- Full Text
- View/download PDF
50. Antisense technology: A review
- Author
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Crooke, Stanley T., Liang, Xue-Hai, Baker, Brenda F., and Crooke, Rosanne M.
- Published
- 2021
- Full Text
- View/download PDF
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