12 results on '"Somaiya, Rachana D."'
Search Results
2. Differential Expression Analysis Identifies Candidate Synaptogenic Molecules for Wiring Direction-Selective Circuits in the Retina.
- Author
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Tworig, Joshua M., Morrie, Ryan D., Bistrong, Karina, Somaiya, Rachana D., Shaw Hsu, Liang, Jocelyn, Cornejo, Karen G., and Feller, Marla B.
- Subjects
GENE expression ,RETINA ,NANOWIRES ,RETINAL ganglion cells ,RNA sequencing ,NEURAL circuitry ,INTERNEURONS - Abstract
An organizational feature of neural circuits is the specificity of synaptic connections. A striking example is the direction-selective (DS) circuit of the retina. There are multiple subtypes of DS retinal ganglion cells (DSGCs) that prefer motion along one of four preferred directions. This computation is mediated by selective wiring of a single inhibitory interneuron, the starburst amacrine cell (SAC), with each DSGC subtype preferentially receiving input from a subset of SAC processes. We hypothesize that the molecular basis of this wiring is mediated in part by unique expression profiles of DSGC subtypes. To test this, we first performed paired recordings from isolated mouse retinas of both sexes to determine that postnatal day 10 (P10) represents the age at which asymmetric synapses form. Second, we performed RNA sequencing and differential expression analysis on isolated P10 ON–OFF DSGCs tuned for either nasal or ventral motion and identified candidates which may promote direction-specific wiring. We then used a conditional knock-out strategy to test the role of one candidate, the secreted synaptic organizer cerebellin-4 (Cbln4), in the development of DS tuning. Using two-photon calcium imaging, we observed a small deficit in directional tuning among ventral-preferring DSGCs lacking Cbln4, though whole-cell voltage-clamp recordings did not identify a significant change in inhibitory inputs. This suggests that Cbln4 does not function primarily via a cell-autonomous mechanism to instruct wiring of DS circuits. Nevertheless, our transcriptomic analysis identified unique candidate factors for gaining insights into the molecular mechanisms that instruct wiring specificity in the DS circuit. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Development of astrocyte morphology and function in mouse visual thalamus
- Author
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Somaiya, Rachana D., primary, Huebschman, Natalie A., additional, Chaunsali, Lata, additional, Sabbagh, Ubadah, additional, Carrillo, Gabriela L., additional, Tewari, Bhanu P., additional, and Fox, Michael A., additional
- Published
- 2021
- Full Text
- View/download PDF
4. cGAS-STING Signaling Pathway Mediates Brain Trauma-Induced Type I Interferon Response
- Author
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Fritsch, Lauren, primary, Ju, Jing, additional, Basso, Erwin Kristobal Gudenschwager, additional, Soliman, Eman, additional, Paul, Swagatika, additional, Chen, Jiang, additional, Kowalski, Elizabeth, additional, Tuhy, Taylor C, additional, Somaiya, Rachana D, additional, Wang, Xia, additional, Allen, Irving C, additional, Theus, Michelle H, additional, and Pickrell, Alicia M, additional
- Published
- 2021
- Full Text
- View/download PDF
5. Diverse GABAergic neurons organize into subtype-specific sublaminae in the ventral lateral geniculate nucleus
- Author
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Sabbagh, Ubadah, Govindaiah, Gubbi, Somaiya, Rachana D., Ha, Ryan V., Wei, Jessica C., Guido, William, Fox, Michael A., Sabbagh, Ubadah, Govindaiah, Gubbi, Somaiya, Rachana D., Ha, Ryan V., Wei, Jessica C., Guido, William, and Fox, Michael A.
- Abstract
In the visual system, retinal axons convey visual information from the outside world to dozens of distinct retinorecipient brain regions and organize that information at several levels, including either at the level of retinal afferents, cytoarchitecture of intrinsic retinorecipient neurons, or a combination of the two. Two major retinorecipient nuclei which are densely innervated by retinal axons are the dorsal lateral geniculate nucleus, which is important for classical image-forming vision, and ventral LGN (vLGN), which is associated with non-image-forming vision. The neurochemistry, cytoarchitecture, and retinothalamic connectivity in vLGN remain unresolved, raising fundamental questions of how it receives and processes visual information. To shed light on these important questions, used in situ hybridization, immunohistochemistry, and genetic reporter lines to identify and characterize novel neuronal cell types in mouse vLGN. Not only were a high percentage of these cells GABAergic, we discovered transcriptomically distinct GABAergic cell types reside in the two major laminae of vLGN, the retinorecipient, external vLGN (vLGNe) and the non-retinorecipient, internal vLGN (vLGNi). Furthermore, within vLGNe, we identified transcriptionally distinct subtypes of GABAergic cells that are distributed into four adjacent sublaminae. Using trans-synaptic viral tracing and in vitro electrophysiology, we found cells in each these vLGNe sublaminae receive monosynaptic inputs from retina. These results not only identify novel subtypes of GABAergic cells in vLGN, they suggest the subtype-specific laminar distribution of retinorecipient cells in vLGNe may be important for receiving, processing, and transmitting light-derived signals in parallel channels of the subcortical visual system.
- Published
- 2020
- Full Text
- View/download PDF
6. Diverse GABAergic neurons organize into subtype-specific sublaminae in the ventral lateral geniculate nucleus
- Author
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Biological Sciences, Fralin Biomedical Research Institute, School of Neuroscience, Virginia Tech Carilion School of Medicine, Sabbagh, Ubadah, Govindaiah, Gubbi, Somaiya, Rachana D., Ha, Ryan V., Wei, Jessica C., Guido, William, Fox, Michael A., Biological Sciences, Fralin Biomedical Research Institute, School of Neuroscience, Virginia Tech Carilion School of Medicine, Sabbagh, Ubadah, Govindaiah, Gubbi, Somaiya, Rachana D., Ha, Ryan V., Wei, Jessica C., Guido, William, and Fox, Michael A.
- Abstract
In the visual system, retinal axons convey visual information from the outside world to dozens of distinct retinorecipient brain regions and organize that information at several levels, including either at the level of retinal afferents, cytoarchitecture of intrinsic retinorecipient neurons, or a combination of the two. Two major retinorecipient nuclei which are densely innervated by retinal axons are the dorsal lateral geniculate nucleus, which is important for classical image-forming vision, and ventral LGN (vLGN), which is associated with non-image-forming vision. The neurochemistry, cytoarchitecture, and retinothalamic connectivity in vLGN remain unresolved, raising fundamental questions of how it receives and processes visual information. To shed light on these important questions, used in situ hybridization, immunohistochemistry, and genetic reporter lines to identify and characterize novel neuronal cell types in mouse vLGN. Not only were a high percentage of these cells GABAergic, we discovered transcriptomically distinct GABAergic cell types reside in the two major laminae of vLGN, the retinorecipient, external vLGN (vLGNe) and the non-retinorecipient, internal vLGN (vLGNi). Furthermore, within vLGNe, we identified transcriptionally distinct subtypes of GABAergic cells that are distributed into four adjacent sublaminae. Using trans-synaptic viral tracing and in vitro electrophysiology, we found cells in each these vLGNe sublaminae receive monosynaptic inputs from retina. These results not only identify novel subtypes of GABAergic cells in vLGN, they suggest the subtype-specific laminar distribution of retinorecipient cells in vLGNe may be important for receiving, processing, and transmitting light-derived signals in parallel channels of the subcortical visual system.
- Published
- 2020
7. Retinal inputs signal astrocytes to recruit interneurons into visual thalamus
- Author
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Fralin Biomedical Research Institute, Biological Sciences, Virginia Tech Carilion School of Medicine, Su, Jianmin, Charalambakis, Naomi E., Sabbagh, Ubadah, Somaiya, Rachana D., Monavarfeshani, Aboozar, Guido, William, Fox, Michael A., Fralin Biomedical Research Institute, Biological Sciences, Virginia Tech Carilion School of Medicine, Su, Jianmin, Charalambakis, Naomi E., Sabbagh, Ubadah, Somaiya, Rachana D., Monavarfeshani, Aboozar, Guido, William, and Fox, Michael A.
- Abstract
Inhibitory interneurons comprise a fraction of the total neurons in the visual thalamus but are essential for sharpening receptive field properties and improving contrast-gain of retinogeniculate transmission. During early development, these interneurons undergo long-range migration from germinal zones, a process regulated by the innervation of the visual thalamus by retinal ganglion cells. Here, using transcriptomic approaches, we identified a motogenic cue, fibroblast growth factor 15 (FGF15), whose expression in the visual thalamus is regulated by retinal input. Targeted deletion of functional FGF15 in mice led to a reduction in thalamic GABAergic interneurons similar to that observed in the absence of retinal input. This loss may be attributed, at least in part, to misrouting of interneurons into nonvisual thalamic nuclei. Unexpectedly, expression analysis revealed that FGF15 is generated by thalamic astrocytes and not retino-recipient neurons. Thus, these data show that retinal inputs signal through astrocytes to direct the long-range recruitment of interneurons into the visual thalamus.
- Published
- 2020
8. Development of astrocyte morphology and function in mouse visual thalamus.
- Author
-
Somaiya, Rachana D., Huebschman, Natalie A., Chaunsali, Lata, Sabbagh, Ubadah, Carrillo, Gabriela L., Tewari, Bhanu P., and Fox, Michael A.
- Abstract
The rodent visual thalamus has served as a powerful model to elucidate the cellular and molecular mechanisms that underlie sensory circuit formation and function. Despite significant advances in our understanding of the role of axon‐target interactions and neural activity in orchestrating circuit formation in visual thalamus, the role of non‐neuronal cells, such as astrocytes, is less clear. In fact, we know little about the transcriptional identity and development of astrocytes in mouse visual thalamus. To address this gap in knowledge, we studied the expression of canonical astrocyte molecules in visual thalamus using immunostaining, in situ hybridization, and reporter lines. While our data suggests some level of heterogeneity of astrocytes in different nuclei of the visual thalamus, the majority of thalamic astrocytes appeared to be labeled in Aldh1l1‐EGFP mice. This led us to use this transgenic line to characterize the neonatal and postnatal development of these cells in visual thalamus. Our data show that not only have the entire cohort of astrocytes migrated into visual thalamus by eye‐opening but they also have acquired their adult‐like morphology, even while retinogeniculate synapses are still maturing. Furthermore, ultrastructural, immunohistochemical, and functional approaches revealed that by eye‐opening, thalamic astrocytes ensheathe retinogeniculate synapses and are capable of efficient uptake of glutamate. Taken together, our results reveal that the morphological, anatomical, and functional development of astrocytes in visual thalamus occurs prior to eye‐opening and the emergence of experience‐dependent visual activity. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
9. Diverse GABAergic neurons organize into subtype‐specific sublaminae in the ventral lateral geniculate nucleus
- Author
-
Sabbagh, Ubadah, primary, Govindaiah, Gubbi, additional, Somaiya, Rachana D., additional, Ha, Ryan V., additional, Wei, Jessica C., additional, Guido, William, additional, and Fox, Michael A., additional
- Published
- 2020
- Full Text
- View/download PDF
10. Diverse GABAergic neurons organize into subtype‐specific sublaminae in the ventral lateral geniculate nucleus.
- Author
-
Sabbagh, Ubadah, Govindaiah, Gubbi, Somaiya, Rachana D., Ha, Ryan V., Wei, Jessica C., Guido, William, and Fox, Michael A.
- Subjects
LATERAL geniculate body ,GABAERGIC neurons ,AFFERENT pathways ,OPTICAL information processing ,IN situ hybridization ,RETINA ,VISUAL cortex - Abstract
In the visual system, retinal axons convey visual information from the outside world to dozens of distinct retinorecipient brain regions and organize that information at several levels, including either at the level of retinal afferents, cytoarchitecture of intrinsic retinorecipient neurons, or a combination of the two. Two major retinorecipient nuclei which are densely innervated by retinal axons are the dorsal lateral geniculate nucleus, which is important for classical image‐forming vision, and ventral LGN (vLGN), which is associated with non‐image‐forming vision. The neurochemistry, cytoarchitecture, and retinothalamic connectivity in vLGN remain unresolved, raising fundamental questions of how it receives and processes visual information. To shed light on these important questions, used in situ hybridization, immunohistochemistry, and genetic reporter lines to identify and characterize novel neuronal cell types in mouse vLGN. Not only were a high percentage of these cells GABAergic, we discovered transcriptomically distinct GABAergic cell types reside in the two major laminae of vLGN, the retinorecipient, external vLGN (vLGNe) and the non‐retinorecipient, internal vLGN (vLGNi). Furthermore, within vLGNe, we identified transcriptionally distinct subtypes of GABAergic cells that are distributed into four adjacent sublaminae. Using trans‐synaptic viral tracing and in vitro electrophysiology, we found cells in each these vLGNe sublaminae receive monosynaptic inputs from retina. These results not only identify novel subtypes of GABAergic cells in vLGN, they suggest the subtype‐specific laminar distribution of retinorecipient cells in vLGNe may be important for receiving, processing, and transmitting light‐derived signals in parallel channels of the subcortical visual system. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
11. Retinal inputs signal astrocytes to recruit interneurons into visual thalamus.
- Author
-
Jianmin Su, Charalambakis, Naomi E., Sabbagh, Ubadah, Somaiya, Rachana D., Monavarfeshani, Aboozar, Guido, William, and Fox, Michael A.
- Subjects
THALAMUS ,THALAMIC nuclei ,FIBROBLAST growth factors ,RETINAL ganglion cells ,INNERVATION - Abstract
Inhibitory interneurons comprise a fraction of the total neurons in the visual thalamus but are essential for sharpening receptive field properties and improving contrast-gain of retinogeniculate transmission. During early development, these interneurons undergo long-range migration from germinal zones, a process regulated by the innervation of the visual thalamus by retinal ganglion cells. Here, using transcriptomic approaches, we identified a motogenic cue, fibroblast growth factor 15 (FGF15), whose expression in the visual thalamus is regulated by retinal input. Targeted deletion of functional FGF15 in mice led to a reduction in thalamic GABAergic interneurons similar to that observed in the absence of retinal input. This loss may be attributed, at least in part, to misrouting of interneurons into nonvisual thalamic nuclei. Unexpectedly, expression analysis revealed that FGF15 is generated by thalamic astrocytes and not retino-recipient neurons. Thus, these data show that retinal inputs signal through astrocytes to direct the longrange recruitment of interneurons into the visual thalamus. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
12. Review and Meta-Analyses of TAAR1 Expression in the Immune System and Cancers
- Author
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Fleischer, Lisa M., primary, Somaiya, Rachana D., additional, and Miller, Gregory M., additional
- Published
- 2018
- Full Text
- View/download PDF
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