494 results on '"Soltesz, P"'
Search Results
2. Inhibitory plasticity supports replay generalization in the hippocampus
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Liao, Zhenrui, Terada, Satoshi, Raikov, Ivan Georgiev, Hadjiabadi, Darian, Szoboszlay, Miklos, Soltesz, Ivan, and Losonczy, Attila
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- 2024
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3. National outcomes for dementia patients undergoing cardiac surgery in a pre-structural era
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Tang, Andrew, Eitan, Tal, Dewan, Krish C., Zhou, Guangjin, Rosinski, Brad F., Koroukian, Siran M., Svensson, Lars G., Gillinov, A. Marc, and Soltesz, Edward G.
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- 2024
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4. Acetylcholine receptor based chemogenetics engineered for neuronal inhibition and seizure control assessed in mice
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Nguyen, Quynh-Anh, Klein, Peter M., Xie, Cheng, Benthall, Katelyn N., Iafrati, Jillian, Homidan, Jesslyn, Bendor, Jacob T., Dudok, Barna, Farrell, Jordan S., Gschwind, Tilo, Porter, Charlotte L., Keravala, Annahita, Dodson, G. Steven, and Soltesz, Ivan
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- 2024
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5. Author Correction: Synthetic GPCRs for programmable sensing and control of cell behaviour
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Kalogriopoulos, Nicholas A., Tei, Reika, Yan, Yuqi, Klein, Peter M., Ravalin, Matthew, Cai, Bo, Soltesz, Ivan, Li, Yulong, and Ting, Alice Y.
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- 2025
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6. Design and characteristics of the prophylactic intra-operative ventricular arrhythmia ablation in high-risk LVAD candidates (PIVATAL) trial.
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Huang, David, Gosev, Igor, Wood, Katherine, Vidula, Hima, Stevenson, William, Marchlinski, Frank, Supple, Gregory, Zalawadiya, Sandip, Weiss, J, Tung, Roderick, Tzou, Wendy, Moss, Joshua, Kancharla, Krishna, Chaudhry, Sunit-Preet, Patel, Parin, Khan, Arfaat, Schuger, Claudio, Rozen, Guy, Kiernan, Michael, Couper, Gregory, Leacche, Marzia, Molina, Ezequiel, Shah, Anand, Lloyd, Michael, Sroubek, Jakub, Soltesz, Edward, Shivkumar, Kalyanam, White, Casey, Tankut, Sinan, Johnson, Brent, McNitt, Scott, Kutyifa, Valentina, Zareba, Wojciech, and Goldenberg, Ilan
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ablation ,left ventricular assist device ,ventricular tachycardia ,Humans ,Heart-Assist Devices ,Prospective Studies ,Quality of Life ,Risk Factors ,Electrocardiography ,Arrhythmias ,Cardiac ,Tachycardia ,Ventricular ,Heart Failure ,Defibrillators ,Implantable ,Treatment Outcome - Abstract
BACKGROUND: The use of a Left Ventricular Assist Device (LVAD) in patients with advanced heart failure refractory to optimal medical management has progressed steadily over the past two decades. Data have demonstrated reduced LVAD efficacy, worse clinical outcome, and higher mortality for patients who experience significant ventricular tachyarrhythmia (VTA). We hypothesize that a novel prophylactic intra-operative VTA ablation protocol at the time of LVAD implantation may reduce the recurrent VTA and adverse events postimplant. METHODS: We designed a prospective, multicenter, open-label, randomized-controlled clinical trial enrolling 100 patients who are LVAD candidates with a history of VTA in the previous 5 years. Enrolled patients will be randomized in a 1:1 fashion to intra-operative VTA ablation (n = 50) versus conventional medical management (n = 50) with LVAD implant. Arrhythmia outcomes data will be captured by an implantable cardioverter defibrillator (ICD) to monitor VTA events, with a uniform ICD programming protocol. Patients will be followed prospectively over a mean of 18 months (with a minimum of 9 months) after LVAD implantation to evaluate recurrent VTA, adverse events, and procedural outcomes. Secondary endpoints include right heart function/hemodynamics, healthcare utilization, and quality of life. CONCLUSION: The primary aim of this first-ever randomized trial is to assess the efficacy of intra-operative ablation during LVAD surgery in reducing VTA recurrence and improving clinical outcomes for patients with a history of VTA.
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- 2023
7. The fasciola cinereum of the hippocampal tail as an interventional target in epilepsy
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Jamiolkowski, Ryan M., Nguyen, Quynh-Anh, Farrell, Jordan S., McGinn, Ryan J., Hartmann, David A., Nirschl, Jeff J., Sanchez, Mateo I., Buch, Vivek P., and Soltesz, Ivan
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- 2024
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8. Neural and behavioural state switching during hippocampal dentate spikes
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Farrell, Jordan S., Hwaun, Ernie, Dudok, Barna, and Soltesz, Ivan
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- 2024
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9. Learning pharmacometric covariate model structures with symbolic regression networks
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Wahlquist, Ylva, Sundell, Jesper, and Soltesz, Kristian
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- 2024
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10. Limitations of time-delayed case isolation in heterogeneous SIR models
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Hansson, Jonas, Govaert, Alain, Pates, Richard, Tegling, Emma, and Soltesz, Kristian
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Mathematics - Optimization and Control ,Physics - Physics and Society ,Quantitative Biology - Populations and Evolution - Abstract
Case isolation, that is, detection and isolation of infected individuals in order to prevent spread, is a strategy to curb infectious disease epidemics. Here, we study the efficiency of a case isolation strategy subject to time delays in terms of its ability to stabilize the epidemic spread in heterogeneous contact networks. For an SIR epidemic model, we characterize the stability boundary analytically and show how it depends on the time delay between infection and isolation as well as the heterogeneity of the inter-individual contact network, quantified by the variance in contact rates. We show that network heterogeneity accounts for a restricting correction factor to previously derived stability results for homogeneous SIR models (with uniform contact rates), which are therefore too optimistic on the relevant time scales. We illustrate the results and the underlying mechanisms through insightful numerical examples., Comment: 6 pages, 3 figures
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- 2022
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11. Measurements of the $^{27}{\rm Al}(\alpha,n)$ Thick Target Yield Near Threshold
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Brandenburg, K., Hamad, G., Meisel, Z., Brune, C. R., Carter, D. E., Derkin, J., Ingram, D. C., Jones-Alberty, Y., Kenady, B., Massey, T. N., Saxena, M., Soltesz, D., Subedi, S. K., and Warren, J.
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Nuclear Experiment - Abstract
We present results from direct measurements of the $^{27}{\rm Al}(\alpha,n)$ thick target yield from laboratory incident energies $E_{\alpha}\approx$ 3$-$5~MeV, performed with the $^{3}$HeBF$_{3}$ Giant Barrel (HeBGB) neutron detector at the Edwards Accelerator Laboratory. Our measurements have a small energy cadence in order to address discrepancies and sparseness of thick-target yield data sets existing for this energy region. We find general agreement with existing data sets, including yields derived from cross section data, while resolving a discrepancy between existing thick-target yield data sets for $E_{\alpha}\approx4-5$~MeV. However, for $E_{\alpha}<3.5$~MeV, our results are substantially lower than previous thick-target yield data and somewhat larger than yields calculated from existing cross section data. Our data complete the energy-range needed for estimates of the $^{27}{\rm Al}(\alpha,n)$ contribution to neutrino and dark matter detector backgrounds and result in increased viability of $^{27}{\rm Al}(\alpha,n)$ as a plasma diagnostic tool at fusion facilities such as the National Ignition Facility., Comment: Accepted to Nuclear Science and Engineering
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- 2022
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12. Measurements of the $^{96}$Zr($\alpha$,n)$^{99}$Mo cross section for astrophysics and applications
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Hamad, Gula, Brandenburg, Kristyn, Meisel, Zach, Brune, Carl R., Carter, Don E., Ingram, David C., Jones-Alberty, Yenuel, Massey, Thomas N., Saxena, Mansi, Soltesz, Doug, Subedi, Shiv K., and Voinov, Alexander V.
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Nuclear Experiment - Abstract
The reaction $^{96}$Zr($\alpha$,n)$^{99}$Mo plays an important role in $\nu$-driven wind nucleosynthesis in core-collapse supernovae and is a possible avenue for medical isotope production. Cross section measurements were performed using the activation technique at the Edwards Accelerator Laboratory. Results were analyzed along with world data on the $^{96}{\rm Zr}(\alpha,n)$ cross section and $^{96}{\rm Zr}(\alpha,\alpha)$ differential cross section using large-scale Hauser-Feshbach calculations. We compare our data, previous measurements, and a statistical description of the reaction. We find a larger cross section at low energies compared to prior experimental results, allowing for a larger astrophysical reaction rate. This may impact results of core-collapse supernova $\nu$-driven wind nucleosynthesis calculations, but does not significantly alter prior conclusions about $^{99}{\rm Mo}$ production for medical physics applications. The results from our large-scale Hauser-Feshbach calculations demonstrate that phenomenological optical potentials may yet be adequate to describe $(\alpha,n)$ reactions of interest for $\nu$-driven wind nucleosynthesis, albeit with regionally-adjusted model parameters., Comment: accepted to PRC
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- 2022
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13. Galactic cosmic radiation exposure causes multifaceted neurocognitive impairments
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Alaghband, Yasaman, Klein, Peter M, Kramár, Eniko A, Cranston, Michael N, Perry, Bayley C, Shelerud, Lukas M, Kane, Alice E, Doan, Ngoc-Lien, Ru, Ning, Acharya, Munjal M, Wood, Marcelo A, Sinclair, David A, Dickstein, Dara L, Soltesz, Ivan, Limoli, Charles L, and Baulch, Janet E
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Medical Biochemistry and Metabolomics ,Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Neurosciences ,Behavioral and Social Science ,2.1 Biological and endogenous factors ,Neurological ,Female ,Mice ,Male ,Animals ,Hippocampus ,Synapses ,Long-Term Potentiation ,Neuronal Plasticity ,Radiation Exposure ,Cognitive dysfunction ,Electrophysiology ,Synaptic plasticity ,Space radiation ,Biochemistry and Cell Biology ,Physiology ,Clinical Sciences ,Biochemistry & Molecular Biology ,Biochemistry and cell biology ,Medical biochemistry and metabolomics ,Oncology and carcinogenesis - Abstract
Technological advancements have facilitated the implementation of realistic, terrestrial-based complex 33-beam galactic cosmic radiation simulations (GCR Sim) to now probe central nervous system functionality. This work expands considerably on prior, simplified GCR simulations, yielding new insights into responses of male and female mice exposed to 40-50 cGy acute or chronic radiations relevant to deep space travel. Results of the object in updated location task suggested that exposure to acute or chronic GCR Sim induced persistent impairments in hippocampus-dependent memory formation and reconsolidation in female mice that did not manifest robustly in irradiated male mice. Interestingly, irradiated male mice, but not females, were impaired in novel object recognition and chronically irradiated males exhibited increased aggressive behavior on the tube dominance test. Electrophysiology studies used to evaluate synaptic plasticity in the hippocampal CA1 region revealed significant reductions in long-term potentiation after each irradiation paradigm in both sexes. Interestingly, network-level disruptions did not translate to altered intrinsic electrophysiological properties of CA1 pyramidal cells, whereas acute exposures caused modest drops in excitatory synaptic signaling in males. Ultrastructural analyses of CA1 synapses found smaller postsynaptic densities in larger spines of chronically exposed mice compared to controls and acutely exposed mice. Myelination was also affected by GCR Sim with acutely exposed mice exhibiting an increase in the percent of myelinated axons; however, the myelin sheathes on small calibur ( 0.5 mm) axons were thinner when compared to controls. Present findings might have been predicted based on previous studies using single and mixed beam exposures and provide further evidence that space-relevant radiation exposures disrupt critical cognitive processes and underlying neuronal network-level plasticity, albeit not to the extent that might have been previously predicted.
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- 2023
14. $^{57}$Zn $\beta$-delayed proton emission establishes the $^{56}$Ni $rp$-process waiting point bypass
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Saxena, M., Ong, W. -J, Meisel, Z., Hoff, D. E. M., Smirnova, N., Bender, P. C., Burcher, S. P., Carpenter, M. P., Carroll, J. J., Chester, A., Chiara, C. J., Conaway, R., Copp, P. A., Crider, B. P., Derkin, J., Estrade, A., Hamad, G., Harke, J. T., Jain, R., Jayatissa, H., Liddick, S. N., Longfellow, B., Mogannam, M., Montes, F., Nepal, N., Ogunbeku, T. H., Richard, A. L., Schatz, H., Soltesz, D., Subedi, S. K., Sultana, I., Tamashiro, A. S., Tripathi, V., Xiaog, Y., and Zink, R.
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Nuclear Experiment ,Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Solar and Stellar Astrophysics - Abstract
We measured the $^{57}$Zn $\beta$-delayed proton ($\beta$p) and $\gamma$ emission at the National Superconducting Cyclotron Laboratory. We find a $^{57}$Zn half-life of 43.6 $\pm$ 0.2 ms, $\beta$p branching ratio of (84.7 $\pm$ 1.4)%, and identify four transitions corresponding to the exotic $\beta$-$\gamma$-$p$ decay mode, the second such identification in the $f p$-shell. The $p/\gamma$ ratio was used to correct for isospin mixing while determining the $^{57}$Zn mass via the isobaric multiplet mass equation. Previously, it was uncertain as to whether the rp-process flow could bypass the textbook waiting point $^{56}$Ni for astrophysical conditions relevant to Type-I X-ray bursts. Our results definitively establish the existence of the $^{56}$Ni bypass, with 14-17% of the $rp$-process flow taking this route.
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- 2022
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15. The Neurodata Without Borders ecosystem for neurophysiological data science.
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Rübel, Oliver, Tritt, Andrew, Ly, Ryan, Dichter, Benjamin K, Ghosh, Satrajit, Niu, Lawrence, Baker, Pamela, Soltesz, Ivan, Ng, Lydia, Svoboda, Karel, Frank, Loren, and Bouchard, Kristofer E
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Humans ,Neurophysiology ,Ecosystem ,Software ,Metadata ,Data Science ,FAIR data ,archive ,data ecosystem ,data language ,data standard ,human ,mouse ,neuroscience ,rat ,Neurosciences ,Networking and Information Technology R&D (NITRD) ,Human ,Mouse ,Rat ,Biochemistry and Cell Biology - Abstract
The neurophysiology of cells and tissues are monitored electrophysiologically and optically in diverse experiments and species, ranging from flies to humans. Understanding the brain requires integration of data across this diversity, and thus these data must be findable, accessible, interoperable, and reusable (FAIR). This requires a standard language for data and metadata that can coevolve with neuroscience. We describe design and implementation principles for a language for neurophysiology data. Our open-source software (Neurodata Without Borders, NWB) defines and modularizes the interdependent, yet separable, components of a data language. We demonstrate NWB's impact through unified description of neurophysiology data across diverse modalities and species. NWB exists in an ecosystem, which includes data management, analysis, visualization, and archive tools. Thus, the NWB data language enables reproduction, interchange, and reuse of diverse neurophysiology data. More broadly, the design principles of NWB are generally applicable to enhance discovery across biology through data FAIRness.
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- 2022
16. The $^{3}$He BF$_{3}$ Giant Barrel (HeBGB) Neutron Detector
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Brandenburg, K., Hamad, G., Meisel, Z., Brune, C. R., Carter, D. E., Danley, T., Derkin, J., Jones-Alberty, Y., Kenady, B., Massey, T. N., Paneru, S., Saxena, M., Soltesz, D., Subedi, S. K., and Warren, J.
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Physics - Instrumentation and Detectors ,Nuclear Experiment - Abstract
$(\alpha,n)$ reactions play an important role in nuclear astrophysics and applications and are an important background source in neutrino and dark matter detectors. Measurements of total $(\alpha,n)$ cross sections employing direct neutron detection often have a considerable systematic uncertainty associated with the energy-dependent neutron detection efficiency and the unknown initial neutron energy distribution. The $^{3}{\rm He}\,{\rm BF}_{3}$ Giant Barrel (HeBGB) neutron detector was built at the Edwards Accelerator Laboratory at Ohio University to overcome this challenge. HeBGB offers a near-constant neutron detection efficiency of ($7.5\pm 1.2$) \% over the neutron energy range 0.01 MeV -- 9.00 MeV, removing a significant source of systematic uncertainty present in earlier $(\alpha,n)$ cross section measurements.
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- 2021
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17. Neutron detection efficiency of the Neutron dEtector with Xn Tracking (NEXT)
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Neupane, S., Heideman, J., Grzywacz, R., Hooker, J., Jones, K. L., Kitamura, N., Thornsberry, C. R., Heilbronn, L. H., Rajabali, M. M., Alberty-Jones, Y., Derkin, J., Massey, T., and Soltesz, D.
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Physics - Instrumentation and Detectors - Abstract
An efficient neutron detection system with good energy resolution is required to correctly characterize decays of neutron-rich nuclei where $\beta-$delayed neutron emission is a dominant decay mode. The Neutron dEtector with Xn Tracking (NEXT) has been designed to measure $\beta$-delayed neutron emitters. By segmenting the detector along the neutron flight path, NEXT reduces the associated uncertainties in neutron time-of-flight measurements, improving energy resolution while maintaining detection efficiency. Detector prototypes are comprised of optically separated segments of a neutron-gamma discriminating plastic scintillator coupled to position-sensitive photomultiplier tubes. The first performance studies of this detector showed that high intrinsic neutron detection efficiency could be achieved while retaining good energy resolution. The results from the efficiency measurements using neutrons from direct reactions are presented., Comment: 8 pages, 9 figures
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- 2021
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18. A consensus statement on detection of hippocampal sharp wave ripples and differentiation from other fast oscillations
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Liu, Anli A, Henin, Simon, Abbaspoor, Saman, Bragin, Anatol, Buffalo, Elizabeth A, Farrell, Jordan S, Foster, David J, Frank, Loren M, Gedankien, Tamara, Gotman, Jean, Guidera, Jennifer A, Hoffman, Kari L, Jacobs, Joshua, Kahana, Michael J, Li, Lin, Liao, Zhenrui, Lin, Jack J, Losonczy, Attila, Malach, Rafael, van der Meer, Matthijs A, McClain, Kathryn, McNaughton, Bruce L, Norman, Yitzhak, Navas-Olive, Andrea, de la Prida, Liset M, Rueckemann, Jon W, Sakon, John J, Skelin, Ivan, Soltesz, Ivan, Staresina, Bernhard P, Weiss, Shennan A, Wilson, Matthew A, Zaghloul, Kareem A, Zugaro, Michaël, and Buzsáki, György
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Biological Psychology ,Psychology ,Prevention ,Clinical Research ,1.1 Normal biological development and functioning ,Underpinning research ,Action Potentials ,Hippocampus ,Humans ,Memory - Abstract
Decades of rodent research have established the role of hippocampal sharp wave ripples (SPW-Rs) in consolidating and guiding experience. More recently, intracranial recordings in humans have suggested their role in episodic and semantic memory. Yet, common standards for recording, detection, and reporting do not exist. Here, we outline the methodological challenges involved in detecting ripple events and offer practical recommendations to improve separation from other high-frequency oscillations. We argue that shared experimental, detection, and reporting standards will provide a solid foundation for future translational discovery.
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- 2022
19. Supramammillary regulation of locomotion and hippocampal activity.
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Farrell, Jordan, Lovett-Barron, Matthew, Klein, Peter, Sparks, Fraser, Gschwind, Tilo, Ortiz, Anna, Ahanonu, Biafra, Bradbury, Susanna, Terada, Satoshi, Oijala, Mikko, Hwaun, Ernie, Dudok, Barna, Szabo, Gergely, Schnitzer, Mark, Deisseroth, Karl, Losonczy, Attila, and Soltesz, Ivan
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Action Potentials ,Animals ,Hippocampus ,Hypothalamus ,Posterior ,Locomotion ,Mice ,Mice ,Inbred C57BL ,Neural Pathways ,Neurons ,Rats ,Spatial Navigation ,Substance P ,Theta Rhythm - Abstract
Locomotor speed is a basic input used to calculate one’s position, but where this signal comes from is unclear. We identified neurons in the supramammillary nucleus (SuM) of the rodent hypothalamus that were highly correlated with future locomotor speed and reliably drove locomotion when activated. Robust locomotion control was specifically identified in Tac1 (substance P)–expressing (SuMTac1+) neurons, the activation of which selectively controlled the activity of speed-modulated hippocampal neurons. By contrast, Tac1-deficient (SuMTac1−) cells weakly regulated locomotion but potently controlled the spike timing of hippocampal neurons and were sufficient to entrain local network oscillations. These findings emphasize that the SuM not only regulates basic locomotor activity but also selectively shapes hippocampal neural activity in a manner that may support spatial navigation.
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- 2021
20. Determination of the $^{60}$Zn level density from neutron evaporation spectra
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Soltesz, D., Mamun, M. A. A., Voinov, A. V., Meisel, Z., Brown, B. A., Brune, C. R., Grimes, S. M., Hadizadeh, H., Hornish, M., Massey, T. N., O'Donnell, J. E., and Ormand, W. E.
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Nuclear Experiment - Abstract
Nuclear reactions of interest for astrophysics and applications often rely on statistical model calculations for nuclear reaction rates, particularly for nuclei far from $\beta$-stability. However, statistical model parameters are often poorly constrained, where experimental constraints are particularly sparse for exotic nuclides. For example, our understanding of the breakout from the NiCu cycle in the astrophysical rp-process is currently limited by uncertainties in the statistical properties of the proton-rich nucleus $^{60}$Zn. We have determined the nuclear level density of $^{60}$Zn using neutron evaporation spectra from $^{58}$Ni($^3$He, n) measured at the Edwards Accelerator Laboratory. We compare our results to a number of theoretical predictions, including phenomenological, microscopic, and shell model based approaches. Notably, we find the $^{60}$Zn level density is somewhat lower than expected for excitation energies populated in the $^{59}$Cu(p,$\gamma$)$^{60}$Zn reaction under rp-process conditions. This includes a level density plateau from roughly 5-6 MeV excitation energy, which is counter to the usual expectation of exponential growth and all theoretical predictions that we explore. A determination of the spin-distribution at the relevant excitation energies in $^{60}$Zn is needed to confirm that the Hauser-Feshbach formalism is appropriate for the $^{59}$Cu(p,$\gamma$)$^{60}$Zn reaction rate at X-ray burst temperatures., Comment: 10 pages, 8 figures
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- 2021
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21. Acute, Low-Dose Neutron Exposures Adversely Impact Central Nervous System Function.
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Klein, Peter M, Alaghband, Yasaman, Doan, Ngoc-Lien, Ru, Ning, Drayson, Olivia GG, Baulch, Janet E, Kramár, Enikö A, Wood, Marcelo A, Soltesz, Ivan, and Limoli, Charles L
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cognitive dysfunction ,electrophysiology ,long-term potentiation ,neutrons ,space radiation ,Neurosciences ,Chemical Physics ,Other Chemical Sciences ,Genetics ,Other Biological Sciences - Abstract
A recognized risk of long-duration space travel arises from the elevated exposure astronauts face from galactic cosmic radiation (GCR), which is composed of a diverse array of energetic particles. There is now abundant evidence that exposures to many different charged particle GCR components within acute time frames are sufficient to induce central nervous system deficits that span from the molecular to the whole animal behavioral scale. Enhanced spacecraft shielding can lessen exposures to charged particle GCR components, but may conversely elevate neutron radiation levels. We previously observed that space-relevant neutron radiation doses, chronically delivered at dose-rates expected during planned human exploratory missions, can disrupt hippocampal neuronal excitability, perturb network long-term potentiation and negatively impact cognitive behavior. We have now determined that acute exposures to similar low doses (18 cGy) of neutron radiation can also lead to suppressed hippocampal synaptic signaling, as well as decreased learning and memory performance in male mice. Our results demonstrate that similar nervous system hazards arise from neutron irradiation regardless of the exposure time course. While not always in an identical manner, neutron irradiation disrupts many of the same central nervous system elements as acute charged particle GCR exposures. The risks arising from neutron irradiation are therefore important to consider when determining the overall hazards astronauts will face from the space radiation environment.
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- 2021
22. Maximally selective single-cell target for circuit control in epilepsy models
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Hadjiabadi, Darian, Lovett-Barron, Matthew, Raikov, Ivan Georgiev, Sparks, Fraser T, Liao, Zhenrui, Baraban, Scott C, Leskovec, Jure, Losonczy, Attila, Deisseroth, Karl, and Soltesz, Ivan
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Neurosciences ,Neurodegenerative ,Brain Disorders ,Epilepsy ,1.1 Normal biological development and functioning ,Underpinning research ,Aetiology ,2.1 Biological and endogenous factors ,Neurological ,Animals ,Cell Communication ,Dentate Gyrus ,Nerve Net ,Neurons ,Seizures ,Zebrafish ,adult-born granule cells ,calcium imaging ,effective connectivity modeling ,epilepsy ,higher-order organization ,hubs ,motifs ,network science ,seizure control ,single-cells ,Psychology ,Cognitive Sciences ,Neurology & Neurosurgery - Abstract
Neurological and psychiatric disorders are associated with pathological neural dynamics. The fundamental connectivity patterns of cell-cell communication networks that enable pathological dynamics to emerge remain unknown. Here, we studied epileptic circuits using a newly developed computational pipeline that leveraged single-cell calcium imaging of larval zebrafish and chronically epileptic mice, biologically constrained effective connectivity modeling, and higher-order motif-focused network analysis. We uncovered a novel functional cell type that preferentially emerged in the preseizure state, the superhub, that was unusually richly connected to the rest of the network through feedforward motifs, critically enhancing downstream excitation. Perturbation simulations indicated that disconnecting superhubs was significantly more effective in stabilizing epileptic circuits than disconnecting hub cells that were defined traditionally by connection count. In the dentate gyrus of chronically epileptic mice, superhubs were predominately modeled adult-born granule cells. Collectively, these results predict a new maximally selective and minimally invasive cellular target for seizure control.
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- 2021
23. Detrimental impacts of mixed-ion radiation on nervous system function
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Klein, Peter M, Parihar, Vipan K, Szabo, Gergely G, Zöldi, Miklós, Angulo, Maria C, Allen, Barrett D, Amin, Amal N, Nguyen, Quynh-Anh, Katona, István, Baulch, Janet E, Limoli, Charles L, and Soltesz, Ivan
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Biomedical and Clinical Sciences ,Neurosciences ,Mental Health ,Behavioral and Social Science ,Animals ,Behavior ,Animal ,Cognitive Dysfunction ,Cosmic Radiation ,Hippocampus ,Male ,Mice ,Mice ,Inbred C57BL ,Synaptic Transmission ,Space radiation ,Electrophysiology ,Sharp wave-ripple ,Cognitive dysfunction ,Clinical Sciences ,Neurology & Neurosurgery ,Biochemistry and cell biology - Abstract
Galactic cosmic radiation (GCR), composed of highly energetic and fully ionized atomic nuclei, produces diverse deleterious effects on the body. In researching the neurological risks of GCR exposures, including during human spaceflight, various ground-based single-ion GCR irradiation paradigms induce differential disruptions of cellular activity and overall behavior. However, it remains less clear how irradiation comprising a mix of multiple ions, more accurately recapitulating the space GCR environment, impacts the central nervous system. We therefore examined how mixed-ion GCR irradiation (two similar 5-6 beam combinations of protons, helium, oxygen, silicon and iron ions) influenced neuronal connectivity, functional generation of activity within neural circuits and cognitive behavior in mice. In electrophysiological recordings we find that space-relevant doses of mixed-ion GCR preferentially alter hippocampal inhibitory neurotransmission and produce related disruptions in the local field potentials of hippocampal oscillations. Such underlying perturbation in hippocampal network activity correspond with perturbed learning, memory and anxiety behavior.
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- 2021
24. Constraining the destruction rate of $^{40}$K in stellar nucleosynthesis through the study of the $^{40}$Ar(p,n)$^{40}$K reaction
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Gastis, P., Perdikakis, G., Dissanayake, J., Tsintari, P., Sultana, I., Brune, C. R., Massey, T. N., Meisel, Z., Voinov, A. V., Brandenburg, K., Danley, T., Giri, R., Jones-Alberty, Y., Paneru, S., Soltesz, D., and Subedi, S.
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Nuclear Experiment - Abstract
40K plays a significant role in the radiogenic heating of earth-like exoplanets, which can affect the development of a habitable environment on their surfaces. The initial amount of 40K in the interior of these planets depends on the composition of the interstellar clouds from which they formed. Within this context, nuclear reactions that regulate the production of 40K during stellar evolution can play a critical role. In this study, we constrain for the first time the astrophysical reaction rate of 40K(n,p)40Ar, which is responsible for the destruction of 40K during stellar nucleosynthesis. We performed differential cross-section measurements on the 40Ar(p,n)40K reaction, for six energies in the center-of-mass between 3.2 and 4.0 MeV and various angles between 0-deg and 135-deg. The experiment took place at the Edwards Accelerator Laboratory at Ohio University using the beam swinger target location and a standard neutron time-of-flight technique. The total and partial cross-sections varied with energy due to the contribution from isobaric analog states and Ericson type fluctuations. The energy-averaged neutron angular distributions were symmetrical relative to 90-deg and consistent with the theoretical predictions of the statistical model. Based on the experimental data, local transmission coefficients were extracted and were used to calculate the astrophysical reaction rates of 40Ar(p,n)40K and 40K(n,p)40Ar reactions. Our results support that the destruction rate of 40K in massive stars via the 40K(n,p)40Ar reaction is larger compared to previous estimates. This result directly affects the predicted stellar yields of 40K from nucleosynthesis, which is a critical input parameter for the galactic chemical evolution models that are currently employed for the study of significant properties of exoplanets., Comment: 20 pages, 16 figures, submitted to PRC (revised manuscript after referee's review)
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- 2020
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25. Deep brain optogenetics without intracranial surgery
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Chen, Ritchie, Gore, Felicity, Nguyen, Quynh-Anh, Ramakrishnan, Charu, Patel, Sneha, Kim, Soo Hyun, Raffiee, Misha, Kim, Yoon Seok, Hsueh, Brian, Krook-Magnusson, Esther, Soltesz, Ivan, and Deisseroth, Karl
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Substance Misuse ,Mental Health ,Behavioral and Social Science ,Brain Disorders ,Neurosciences ,Basic Behavioral and Social Science ,Biomedical Imaging ,Rehabilitation ,Neurological ,Animals ,Brain ,Light ,Male ,Mice ,Inbred C57BL ,Neurons ,Optogenetics ,Rats ,Ventral Tegmental Area - Abstract
Achieving temporally precise, noninvasive control over specific neural cell types in the deep brain would advance the study of nervous system function. Here we use the potent channelrhodopsin ChRmine to achieve transcranial photoactivation of defined neural circuits, including midbrain and brainstem structures, at unprecedented depths of up to 7 mm with millisecond precision. Using systemic viral delivery of ChRmine, we demonstrate behavioral modulation without surgery, enabling implant-free deep brain optogenetics.
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- 2021
26. Half-graphs, other non-stable degree sequences, and the switch Markov chain
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Erdős, Péter L., Győri, Ervin, Mezei, Tamás Róbert, Miklós, István, and Soltész, Dániel
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics ,05C30 60J10 68R10 - Abstract
One of the simplest methods of generating a random graph with a given degree sequence is provided by the Monte Carlo Markov Chain method using switches. The switch Markov chain converges to the uniform distribution, but generally the rate of convergence is not known. After a number of results concerning various degree sequences, rapid mixing was established for so-called $P$-stable degree sequences (including that of directed graphs), which covers every previously known rapidly mixing region of degree sequences. In this paper we give a non-trivial family of degree sequences that are not $P$-stable and the switch Markov chain is still rapidly mixing on them. This family has an intimate connection to Tyshkevich-decompositions and strong stability as well., Comment: Generalized the main theorem, paper extended with a number of corroborating results
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- 2019
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27. New bounds on even cycle creating Hamiltonian paths using expander graphs
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Harcos, Gergely and Soltész, Daniel
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Mathematics - Combinatorics ,Mathematics - Number Theory ,05D99, 05C35 - Abstract
We say that two graphs on the same vertex set are $G$-creating if their union (the union of their edges) contains $G$ as a subgraph. Let $H_n(G)$ be the maximum number of pairwise $G$-creating Hamiltonian paths of $K_n$. Cohen, Fachini and K\"orner proved \[n^{\frac{1}{2}n-o(n)}\leq H_n(C_4) \leq n^{\frac{3}{4}n+o(n)}.\] In this paper we close the superexponential gap between their lower and upper bounds by proving \[n^{\frac{1}{2}n-\frac{1}{2}\frac{n}{\log{n}}-O(1)}\leq H_n(C_4) \leq n^{\frac{1}{2}n+o\left(\frac{n}{\log{n}} \right)}.\] We also improve the previously established upper bounds on $H_n(C_{2k})$ for $k>3$, and we present a small improvement on the lower bound of F\"uredi, Kantor, Monti and Sinaimeri on the maximum number of so-called pairwise reversing permutations. One of our main tools is a theorem of Krivelevich, which roughly states that (certain kinds of) good expanders contain many Hamiltonian paths., Comment: 14 pages, LaTeX2e; v2: updated Footnote 1 on Page 5; v3: revised version incorporating suggestions by the referees (the changes are mainly in Section 5); v4: final version to appear in Combinatorica
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- 2019
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28. The mixing time of the switch Markov chains: a unified approach
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Erdős, Péter L., Greenhill, Catherine, Mezei, Tamás Róbert, Miklós, István, Soltész, Dániel, and Soukup, Lajos
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Mathematics - Combinatorics ,Computer Science - Discrete Mathematics ,05C30 60J10 68R10 - Abstract
Since 1997 a considerable effort has been spent to study the mixing time of switch Markov chains on the realizations of graphic degree sequences of simple graphs. Several results were proved on rapidly mixing Markov chains on unconstrained, bipartite, and directed sequences, using different mechanisms. The aim of this paper is to unify these approaches. We will illustrate the strength of the unified method by showing that on any $P$-stable family of unconstrained/bipartite/directed degree sequences the switch Markov chain is rapidly mixing. This is a common generalization of every known result that shows the rapid mixing nature of the switch Markov chain on a region of degree sequences. Two applications of this general result will be presented. One is an almost uniform sampler for power-law degree sequences with exponent $\gamma>1+\sqrt{3}$. The other one shows that the switch Markov chain on the degree sequence of an Erd\H{o}s-R\'enyi random graph $G(n,p)$ is asymptotically almost surely rapidly mixing if $p$ is bounded away from 0 and 1 by at least $\frac{5\log n}{n-1}$., Comment: final review
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- 2019
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29. Mitigation of helium irradiation-induced brain injury by microglia depletion
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Allen, Barrett D, Syage, Amber R, Maroso, Mattia, Baddour, Al Anoud D, Luong, Valerie, Minasyan, Harutyun, Giedzinski, Erich, West, Brian L, Soltesz, Ivan, Limoli, Charles L, Baulch, Janet E, and Acharya, Munjal M
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Biomedical and Clinical Sciences ,Neurosciences ,Immunology ,Brain Disorders ,Mental Health ,Neurodegenerative ,Basic Behavioral and Social Science ,Acquired Cognitive Impairment ,Behavioral and Social Science ,Neurological ,Animals ,Brain ,Cognitive Dysfunction ,Cosmic Radiation ,Helium ,Male ,Mice ,Microglia ,Radiation Injuries ,Experimental ,Space irradiation ,Cosmic radiation ,PLX5622 ,Cognitive function ,Inflammation ,Neuron morphology ,Spine density ,PSD-95 ,Electrophysiology ,Clinical Sciences ,Neurology & Neurosurgery - Abstract
BackgroundCosmic radiation exposures have been found to elicit cognitive impairments involving a wide-range of underlying neuropathology including elevated oxidative stress, neural stem cell loss, and compromised neuronal architecture. Cognitive impairments have also been associated with sustained microglia activation following low dose exposure to helium ions. Space-relevant charged particles elicit neuroinflammation that persists long-term post-irradiation. Here, we investigated the potential neurocognitive benefits of microglia depletion following low dose whole body exposure to helium ions.MethodsAdult mice were administered a dietary inhibitor (PLX5622) of colony stimulating factor-1 receptor (CSF1R) to deplete microglia 2 weeks after whole body helium irradiation (4He, 30 cGy, 400 MeV/n). Cohorts of mice maintained on a normal and PLX5622 diet were tested for cognitive function using seven independent behavioral tasks, microglial activation, hippocampal neuronal morphology, spine density, and electrophysiology properties 4-6 weeks later.ResultsPLX5622 treatment caused a rapid and near complete elimination of microglia in the brain within 3 days of treatment. Irradiated animals on normal diet exhibited a range of behavioral deficits involving the medial pre-frontal cortex and hippocampus and increased microglial activation. Animals on PLX5622 diet exhibited no radiation-induced cognitive deficits, and expression of resting and activated microglia were almost completely abolished, without any effects on the oligodendrocyte progenitors, throughout the brain. While PLX5622 treatment was found to attenuate radiation-induced increases in post-synaptic density protein 95 (PSD-95) puncta and to preserve mushroom type spine densities, other morphologic features of neurons and electrophysiologic measures of intrinsic excitability were relatively unaffected.ConclusionsOur data suggest that microglia play a critical role in cosmic radiation-induced cognitive deficits in mice and, that approaches targeting microglial function are poised to provide considerable benefit to the brain exposed to charged particles.
- Published
- 2020
30. Influence of Rb73 on the ashes of accreting neutron stars
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Hoff, DEM, Rogers, AM, Meisel, Z, Bender, PC, Brandenburg, K, Childers, K, Clark, JA, Dombos, AC, Doucet, ER, Jin, S, Lewis, R, Liddick, SN, Lister, CJ, Morse, C, Schatz, H, Schmidt, K, Soltesz, D, Subedi, SK, Wang, SM, 王思敏, and Waniganeththi, S
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Nuclear and Plasma Physics ,Astronomical Sciences ,Synchrotrons and Accelerators ,Physical Sciences ,Nuclear and plasma physics - Published
- 2020
31. Neurological Impairments in Mice Subjected to Irradiation and Chemotherapy.
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Dey, Deblina, Parihar, Vipan, Szabo, Gergely, Klein, Peter, Tran, Jenny, Moayyad, Jonathan, Ahmed, Faizy, Nguyen, Quynh-Anh, Murry, Alexandria, Merriott, David, Nguyen, Brandon, Goldman, Jodi, Angulo, Maria, Soltesz, Ivan, Piomelli, Daniele, Limoli, Charles, and Baulch, Janet
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Animals ,Anxiety ,Behavior ,Animal ,Brain Neoplasms ,CA1 Region ,Hippocampal ,Combined Modality Therapy ,Depression ,Glioblastoma ,Male ,Mice ,Neurology ,Neurons ,Radiotherapy ,Receptor ,Serotonin ,5-HT1A ,Serotonin ,Signal Transduction ,Temozolomide - Abstract
Radiotherapy, surgery and the chemotherapeutic agent temozolomide (TMZ) are frontline treatments for glioblastoma multiforme (GBM). However beneficial, GBM treatments nevertheless cause anxiety or depression in nearly 50% of patients. To further understand the basis of these neurological complications, we investigated the effects of combined radiotherapy and TMZ chemotherapy (combined treatment) on neurological impairments using a mouse model. Five weeks after combined treatment, mice displayed anxiety-like behaviors, and at 15 weeks both anxiety- and depression-like behaviors were observed. Relevant to the known roles of the serotonin axis in mood disorders, we found that 5HT1A serotonin receptor levels were decreased by ∼50% in the hippocampus at both early and late time points, and a 37% decrease in serotonin levels was observed at 15 weeks postirradiation. Furthermore, chronic treatment with the selective serotonin reuptake inhibitor fluoxetine was sufficient for reversing combined treatment-induced depression-like behaviors. Combined treatment also elicited a transient early increase in activated microglia in the hippocampus, suggesting therapy-induced neuroinflammation that subsided by 15 weeks. Together, the results of this study suggest that interventions targeting the serotonin axis may help ameliorate certain neurological side effects associated with the clinical management of GBM to improve the overall quality of life for cancer patients.
- Published
- 2020
32. Optogenetic intervention of seizures improves spatial memory in a mouse model of chronic temporal lobe epilepsy
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Kim, Hannah K, Gschwind, Tilo, Nguyen, Theresa M, Bui, Anh D, Felong, Sylwia, Ampig, Kristen, Suh, David, Ciernia, Annie V, Wood, Marcelo A, and Soltesz, Ivan
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Biomedical and Clinical Sciences ,Neurosciences ,Brain Disorders ,Epilepsy ,Neurodegenerative ,Aetiology ,2.1 Biological and endogenous factors ,Neurological ,Animals ,Channelrhodopsins ,Chronic Disease ,Cognitive Dysfunction ,Disease Models ,Animal ,Electroencephalography ,Epilepsy ,Temporal Lobe ,Excitatory Amino Acid Agonists ,Hippocampus ,Interneurons ,Kainic Acid ,Mice ,Optogenetics ,Parvalbumins ,Spatial Learning ,Spatial Memory ,Video Recording ,behavior ,closed-loop ,cognitive impairment ,comorbidity ,temporal lobe epilepsy ,Clinical Sciences ,Neurology & Neurosurgery ,Clinical sciences - Abstract
ObjectiveTo determine if closed-loop optogenetic seizure intervention, previously shown to reduce seizure duration in a well-established mouse model chronic temporal lobe epilepsy (TLE), also improves the associated comorbidity of impaired spatial memory.MethodsMice with chronic, spontaneous seizures in the unilateral intrahippocampal kainic acid model of TLE, expressing channelrhodopsin in parvalbumin-expressing interneurons, were implanted with optical fibers and electrodes, and tested for response to closed-loop light intervention of seizures. Animals that responded to closed-loop optogenetic curtailment of seizures were tested in the object location memory test and then given closed-loop optogenetic intervention on all detected seizures for 2 weeks. Following this, they were tested with a second object location memory test, with different objects and contexts than used previously, to assess if seizure suppression can improve deficits in spatial memory.ResultsAnimals that received closed-loop optogenetic intervention performed significantly better in the second object location memory test compared to the first test. Epileptic controls with no intervention showed stable frequency and duration of seizures, as well as stable spatial memory deficits, for several months after the precipitating insult.SignificanceMany currently available treatments for epilepsy target seizures but not the associated comorbidities, therefore there is a need to investigate new potential therapies that may be able to improve both seizure burden and associated comorbidities of epilepsy. In this study, we showed that optogenetic intervention may be able to both shorten seizure duration and improve cognitive outcomes of spatial memory.
- Published
- 2020
33. Questions on the Structure of Perfect Matchings inspired by Quantum Physics
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Krenn, Mario, Gu, Xuemei, and Soltész, Daniel
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Mathematics - Combinatorics ,Quantum Physics - Abstract
We state a number of related questions on the structure of perfect matchings. Those questions are inspired by and directly connected to Quantum Physics. In particular, they concern the constructability of general quantum states using modern photonic technology. For that we introduce a new concept, denoted as inherited vertex coloring. It is a vertex coloring for every perfect matching. The colors are inherited from the color of the incident edge for each perfect matching. First, we formulate the concepts and questions in pure graph-theoretical language, and finally we explain the physical context of every mathematical object that we use. Importantly, every progress towards answering these questions can directly be translated into new understanding in quantum physics., Comment: 10 pages, 4 figures, 6 questions (added suggestions from peer-review)
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- 2019
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34. Erratum: Acharya et al., New Concerns for Neurocognitive Function during Deep Space Exposures to Chronic, Low Dose-Rate, Neutron Radiation
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Acharya, Munjal M, Baulch, Janet E, Klein, Peter M, Baddour, Al Anoud D, Apodaca, Lauren A, Kramar, Eniko A, Alikhani, Leila, Garcia, Camillo Jr, Angulo, Maria C, Batra, Raja S, Fallgren, Christine M, Borak, Thomas B, Stark, Craig EL, Wood, Marcello A, Britten, Richard A, Soltesz, Ivan, and Limoli, Charles L
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Physical Sciences ,Neurosciences - Published
- 2019
35. New concerns for neurocognitive function during deep space exposures to chronic, low dose rate, neutron radiation
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Acharya, Munjal M, Baulch, Janet E, Klein, Peter M, Baddour, Al Anoud D, Apodaca, Lauren A, Kramár, Eniko A, Alikhani, Leila, Garcia, Camillo, Angulo, Maria C, Batra, Raja S, Fallgren, Christine M, Borak, Thomas B, Stark, Craig EL, Wood, Marcello A, Britten, Richard A, Soltesz, Ivan, and Limoli, Charles L
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Physical Sciences ,Neurosciences ,Basic Behavioral and Social Science ,Behavioral and Social Science ,Animals ,Anxiety ,Cognition ,Cosmic Radiation ,Depression ,Extinction ,Psychological ,Hippocampus ,Male ,Memory ,Mice ,Inbred C57BL ,Neurons ,Neutrons ,Photons ,Social Behavior ,Synaptic Transmission ,cognitive dysfunction ,electrophysiology ,long-term potentiation ,low dose-rate ,neutrons ,space radiation - Abstract
As NASA prepares for a mission to Mars, concerns regarding the health risks associated with deep space radiation exposure have emerged. Until now, the impacts of such exposures have only been studied in animals after acute exposures, using dose rates ∼1.5×105 higher than those actually encountered in space. Using a new, low dose-rate neutron irradiation facility, we have uncovered that realistic, low dose-rate exposures produce serious neurocognitive complications associated with impaired neurotransmission. Chronic (6 month) low-dose (18 cGy) and dose rate (1 mGy/d) exposures of mice to a mixed field of neutrons and photons result in diminished hippocampal neuronal excitability and disrupted hippocampal and cortical long-term potentiation. Furthermore, mice displayed severe impairments in learning and memory, and the emergence of distress behaviors. Behavioral analyses showed an alarming increase in risk associated with these realistic simulations, revealing for the first time, some unexpected potential problems associated with deep space travel on all levels of neurological function.
- Published
- 2019
36. Even cycle creating paths
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Soltész, Daniel
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Mathematics - Combinatorics ,05D99, 05C35 - Abstract
We say that two graphs $H_1,H_2$ on the same vertex set are $G$-creating ($G$-different in other papers, this difference is explained in the introduction) if the union of the two graphs contains $G$ as a subgraph. Let $H(n,k)$ be the maximal number of pairwise $C_k$-creating paths (of arbitrary length) on $n$ vertices. The behaviour of $H(n,2k+1)$ is much better understood than the behaviour of $H(n,2k)$, the former is an exponential function of $n$ while the latter is larger than exponential, for every fixed $k$. We study $H(n,k)$ for fixed $k$ and $n$ tending to infinity. The only non trivial upper bound on $H(n,2k)$ was in the case where $k=2$ $$H(n,4)\leq n^{\left(1-\frac{1}{4} \right) n-o(n)}, $$ this was proved by Cohen, Fachini and K\"orner. In this paper, we generalize their method to prove that for every $k \geq 2$, $$H(n,2k) \leq n^{\left( 1- \frac{2}{3k^2-2k} \right)n-o(n)}. $$ Our proof uses constructions of bipartite, regular, $C_{2k}$-free graphs with many edges by Reiman, Benson, Lazebnik, Ustimenko and Woldar. For some special values of $k$ we can have slightly denser such bipartite graphs than for general $k$, this results in having better upper bounds on $H(n,2k)$ than stated above for these special values of $k$.
- Published
- 2018
37. On k-neighbor separated permutations
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Kovács, István and Soltész, Daniel
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Mathematics - Combinatorics ,05D99, 05C35 - Abstract
Two permutations of $[n]=\{1,2 \ldots n\}$ are \textit{$k$-neighbor separated} if there are two elements that are neighbors in one of the permutations and that are separated by exactly $k-2$ other elements in the other permutation. Let the maximal number of pairwise $k$-neighbor separated permutations of $[n]$ be denoted by $P(n,k)$. In a previous paper, the authors have determined $P(n,3)$ for every $n$, answering a question of K\"orner, Messuti and Simonyi affirmatively. In this paper we prove that for every fixed positive integer $\ell $, $$P(n,2^\ell+1) = 2^{n-o(n)}. $$ We conjecture that for every fixed even $k$, $P(n,k)=2^{n-o(n)}$. We also show that this conjecture is asymptotically true in the following sense $$\lim_{k \rightarrow \infty} \lim_{n \rightarrow \infty} \sqrt[n]{P(n,k)}=2.$$ Finally, we show that for even $n$, $P(n,n)= 3n/2$.
- Published
- 2017
38. On Event-Based Sampling for LQG-Optimal Control
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Andrén, Marcus Thelander, Bernhardsson, Bo, Cervin, Anton, and Soltesz, Kristian
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Mathematics - Optimization and Control ,93E20, 93C57 - Abstract
We consider the problem of finding an event-based sampling scheme that optimizes the trade-off between average sampling rate and control performance in a linear-quadratic-Gaussian (LQG) control problem setting with output feedback. Our analysis is based on a recently presented sampled-data controller structure, which remains LQG-optimal for any choice of sampling scheme. We show that optimization of the sampling scheme is related to an elliptic convection-diffusion type partial differential equation over a domain with free boundary, a so called Stefan problem. A numerical method is presented to solve this problem for second order systems, and thus obtain an optimal sampling scheme. The method also directly generalizes to higher order systems, although with a higher computational cost. For the special case of multidimensional integrator systems, we present the optimal sampling scheme on closed form, and prove that it will always outperform its periodic counterpart. Tight bounds on the improvement are presented. The improved performance is also demonstrated in numerical examples, both for an integrator system and a more general case., Comment: 7 pages, 7 figures. Related code at: https://gitlab.control.lth.se/marcus/optimal-trigger-bound . Accepted to 56th IEEE Conference on Decision and Control, Melbourne, Australia, December 12-15, 2017
- Published
- 2017
39. A fluorescent sensor for spatiotemporally resolved imaging of endocannabinoid dynamics in vivo
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Dong, Ao, He, Kaikai, Dudok, Barna, Farrell, Jordan S., Guan, Wuqiang, Liput, Daniel J., Puhl, Henry L., Cai, Ruyi, Wang, Huan, Duan, Jiali, Albarran, Eddy, Ding, Jun, Lovinger, David M., Li, Bo, Soltesz, Ivan, and Li, Yulong
- Published
- 2022
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40. NWB:N 2.0: An Accessible Data Standard for Neurophysiology
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Rübel, Oliver, Tritt, Andrew, Dichter, Benjamin, Braun, Thomas, Cain, Nicholas, Clack, Nathan, Davidson, Thomas, Dougherty, Max, Fillion-Robin, Jean-Christophe, Graddis, Nile, Grauer, Michael, Kiggins, Justin, Niu, Lawrence, Ozturk, Doruk, Schroeder, William, Soltesz, Ivan, Sommer, Friedrich, Svoboda, Karel, Lydia, Ng, Frank, Loren, and Bouchard, Kristofer
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Brain Disorders ,Networking and Information Technology R&D - Abstract
ABSTRACT Neurodata Without Borders: Neurophysiology (NWB:N) is a data standard for neurophysiology, providing neuroscientists with a common standard to share, archive, use, and build common analysis tools for neurophysiology data. With NWB:N version 2.0 (NWB:N 2.0) we made significant advances towards creating a usable standard, software ecosystem, and vibrant community for standardizing neurophysiology data. In this manuscript we focus in particular on the NWB:N data standard schema and present advances towards creating an accessible data standard for neurophysiology.
- Published
- 2019
41. Neutron-upscattering enhancement of the triple-alpha process
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Bishop, J., Parker, C. E., Rogachev, G. V., Ahn, S., Koshchiy, E., Brandenburg, K., Brune, C. R., Charity, R. J., Derkin, J., Dronchi, N., Hamad, G., Jones-Alberty, Y., Kokalova, Tz., Massey, T. N., Meisel, Z., Ohstrom, E. V., Paneru, S. N., Pollacco, E. C., Saxena, M., Singh, N., Smith, R., Sobotka, L. G., Soltesz, D., Subedi, S. K., Voinov, A. V., Warren, J., and Wheldon, C.
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- 2022
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42. Independent sets in the union of two Hamiltonian cycles
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Aharoni, Ron and Soltész, Daniel
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Mathematics - Combinatorics - Abstract
Motivated by a question on the maximal number of vertex disjoint Schrijver graphs in the Kneser graph, we investigate the following function, denoted by $f(n,k)$: the maximal number of Hamiltonian cycles on an $n$ element set, such that no two cycles share a common independent set of size more than $k$. We shall mainly be interested in the behavior of $f(n,k)$ when $k$ is a linear function of $n$, namely $k=cn$. We show a threshold phenomenon: there exists a constant $c_t$ such that for $c
12$ vertices is the union of two Hamiltonian cycles and $\alpha(G)=n/4$, then $V(G)$ can be covered by vertex-disjoint $K_4$ subgraphs. - Published
- 2016
43. Triangle-different Hamiltonian paths
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Kovács, István and Soltész, Dániel
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Mathematics - Combinatorics ,05C35 - Abstract
Let $G$ be a fixed graph. Two paths of length $n-1$ on $n$ vertices (Hamiltonian paths) are $G$-different if there is a subgraph isomorphic to $G$ in their union. In this paper we prove that the maximal number of pairwise triangle-different Hamiltonian paths is equal to the number of balanced bipartitions of the ground set, answering a question of K\"orner, Messuti and Simonyi., Comment: We slightly changed the introduction, added two more papers as references, and added a new short section which deals with the two related questions where Hamiltonian paths are replaced with arbitrary graphs and trees
- Published
- 2016
44. Properties of minimally $t$-tough graphs
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Katona, Gyula Y., Soltész, Dániel, and Varga, Kitti
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Mathematics - Combinatorics - Abstract
A graph $G$ is minimally $t$-tough if the toughness of $G$ is $t$ and the deletion of any edge from $G$ decreases the toughness. Kriesell conjectured that for every minimally $1$-tough graph the minimum degree $\delta(G)=2$. We show that in every minimally $1$-tough graph $\delta(G)\le\frac{n+2}{3}$. We also prove that every minimally $1$-tough claw-free graph is a cycle. On the other hand, we show that for every $t \in \mathbb{Q}$ any graph can be embedded as an induced subgraph into a minimally $t$-tough graph.
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- 2016
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45. Involvement of fast-spiking cells in ictal sequences during spontaneous seizures in rats with chronic temporal lobe epilepsy
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Neumann, Adam R, Raedt, Robrecht, Steenland, Hendrik W, Sprengers, Mathieu, Bzymek, Katarzyna, Navratilova, Zaneta, Mesina, Lilia, Xie, Jeanne, Lapointe, Valerie, Kloosterman, Fabian, Vonck, Kristl, Boon, Paul AJM, Soltesz, Ivan, McNaughton, Bruce L, and Luczak, Artur
- Subjects
Biomedical and Clinical Sciences ,Neurosciences ,Psychology ,Neurodegenerative ,Epilepsy ,Brain Disorders ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Animals ,Chronic Disease ,Epilepsy ,Temporal Lobe ,Hippocampus ,Interneurons ,Male ,Neocortex ,Rats ,Seizures ,Temporal Lobe ,temporal lobe epilepsy ,neuronal population activity ,GABAergic cells ,neuronal population activity ,GABAergic cells ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery ,Biomedical and clinical sciences ,Health sciences - Abstract
See Lenck-Santini (doi:10.1093/awx205) for a scientific commentary on this article. Epileptic seizures represent altered neuronal network dynamics, but the temporal evolution and cellular substrates of the neuronal activity patterns associated with spontaneous seizures are not fully understood. We used simultaneous recordings from multiple neurons in the hippocampus and neocortex of rats with chronic temporal lobe epilepsy to demonstrate that subsets of cells discharge in a highly stereotypical sequential pattern during ictal events, and that these stereotypical patterns were reproducible across consecutive seizures. In contrast to the canonical view that principal cell discharges dominate ictal events, the ictal sequences were predominantly composed of fast-spiking, putative inhibitory neurons, which displayed unusually strong coupling to local field potential even before seizures. The temporal evolution of activity was characterized by unique dynamics where the most correlated neuronal pairs before seizure onset displayed the largest increases in correlation strength during the seizures. These results demonstrate the selective involvement of fast spiking interneurons in structured temporal sequences during spontaneous ictal events in hippocampal and neocortical circuits in experimental models of chronic temporal lobe epilepsy.
- Published
- 2017
46. Neurophysiology of space travel: energetic solar particles cause cell type-specific plasticity of neurotransmission
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Lee, Sang-Hun, Dudok, Barna, Parihar, Vipan K, Jung, Kwang-Mook, Zöldi, Miklós, Kang, Young-Jin, Maroso, Mattia, Alexander, Allyson L, Nelson, Gregory A, Piomelli, Daniele, Katona, István, Limoli, Charles L, and Soltesz, Ivan
- Subjects
Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Basic Behavioral and Social Science ,Behavioral and Social Science ,Neurosciences ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Neurological ,Animals ,Hippocampus ,Interneurons ,Male ,Mice ,Inbred C57BL ,Neuronal Plasticity ,Parvalbumins ,Pyramidal Cells ,Synapses ,Synaptic Transmission ,gamma-Aminobutyric Acid ,Irradiation-induced cognitive impairments ,GABAergic interneurons ,Cannabinoid signaling system ,Medical Physiology ,Cognitive Sciences ,Developmental Biology ,Neurology & Neurosurgery ,Medical physiology - Abstract
In the not too distant future, humankind will embark on one of its greatest adventures, the travel to distant planets. However, deep space travel is associated with an inevitable exposure to radiation fields. Space-relevant doses of protons elicit persistent disruptions in cognition and neuronal structure. However, whether space-relevant irradiation alters neurotransmission is unknown. Within the hippocampus, a brain region crucial for cognition, perisomatic inhibitory control of pyramidal cells (PCs) is supplied by two distinct cell types, the cannabinoid type 1 receptor (CB1)-expressing basket cells (CB1BCs) and parvalbumin (PV)-expressing interneurons (PVINs). Mice subjected to low-dose proton irradiation were analyzed using electrophysiological, biochemical and imaging techniques months after exposure. In irradiated mice, GABA release from CB1BCs onto PCs was dramatically increased. This effect was abolished by CB1 blockade, indicating that irradiation decreased CB1-dependent tonic inhibition of GABA release. These alterations in GABA release were accompanied by decreased levels of the major CB1 ligand 2-arachidonoylglycerol. In contrast, GABA release from PVINs was unchanged, and the excitatory connectivity from PCs to the interneurons also underwent cell type-specific alterations. These results demonstrate that energetic charged particles at space-relevant low doses elicit surprisingly selective long-term plasticity of synaptic microcircuits in the hippocampus. The magnitude and persistent nature of these alterations in synaptic function are consistent with the observed perturbations in cognitive performance after irradiation, while the high specificity of these changes indicates that it may be possible to develop targeted therapeutic interventions to decrease the risk of adverse events during interplanetary travel.
- Published
- 2017
47. Machine learning−derived multivariable predictors of postcardiotomy cardiogenic shock in high-risk cardiac surgery patients
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Soltesz, Edward G., Parks, Randi J., Jortberg, Elise M., and Blackstone, Eugene H.
- Abstract
To develop a model for preoperatively predicting postcardiotomy cardiogenic shock (PCCS) in patients with poor left ventricular (LV) function undergoing cardiac surgery.
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- 2024
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48. Prevention of Ischemic Myocardial Contracture Through Hemodynamically Controlled DCD
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Wahlquist, Ylva, Soltesz, Kristian, Liao, Qiuming, Liu, Xiaofei, Pigot, Henry, Sjöberg, Trygve, and Steen, Stig
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- 2021
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49. New bounds on Simonyi's conjecture
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Soltész, Daniel
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Mathematics - Combinatorics ,05D05 - Abstract
We say that a pair $(\mathcal{A},\mathcal{B})$ is a recovering pair if $\mathcal{A}$ and $\mathcal{B}$ are set systems on an $n$ element ground set, such that for every $A,A' \in \mathcal{A}$ and $B,B' \in \mathcal{B}$ we have that ($A \setminus B = A' \setminus B'$ implies $A=A'$) and symmetrically ($B \setminus A = B' \setminus A'$ implies $B=B'$). G. Simonyi conjectured that if $(\mathcal{A},\mathcal{B})$ is a recovering pair, then $|\mathcal{A}||\mathcal{B}|\leq 2^n$. For the quantity $|\mathcal{A}||\mathcal{B}|$ the best known upper bound is $2.3264^n$ due to K\"orner and Holzman. In this paper we improve this upper bound to $2.284^n$. Our proof is combinatorial., Comment: 14 pages 1 figure
- Published
- 2015
50. On the 1-switch conjecture in the Hypercube and other graphs
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Soltész, Daniel
- Subjects
Mathematics - Combinatorics ,05C78, 05C55 - Abstract
Feder and Subi conjectured that for any $2$-coloring of the edges of the $n$-dimensional cube, we can find an antipodal pair of vertices connected by a path that changes color at most once. We discuss the case of random colorings, and we prove the conjecture for a wide class of colorings. Our method can be applied to a more general problem, where $Q_n$ can be replaced by any graph $G$, the notion of antipodality by a fixed automorphism $\phi \in Aut(G)$. Thus for any $2$-coloring of $E(G)$ we are looking for a pair of vertices $u,v$ such that $u= \phi(v)$ and there is a path between them with as few color changes as possible. We solve this problem for the toroidal grid $G=C_{2a} \square c_{2b}$ with the automorphism that takes every vertex to its unique farthest pair. Our results point towards a more general conjecture which turns out to be supported by a previous theorem of Feder and Subi., Comment: 11 pages, 2 figures
- Published
- 2015
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