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Bacterial biofilm formation and attachment to hosts are mediated by carbohydrate-binding lectins, exopolysaccharides, and their interactions in the extracellular matrix (ECM). During tomato infection Ralstonia pseudosolanacearum (Rps) GMI1000 highly expresses three lectins: LecM, LecF, and LecX. The latter two are uncharacterized. We evaluated the roles in bacterial wilt disease of LecF, a fucose-binding lectin, LecX, a xylose-binding lectin, and the Rps exopolysaccharide EPS I. Interestingly, single and double lectin mutants attached to tomato roots better and formed more biofilm under static conditions in vitro. Consistent with this finding, static bacterial aggregation was suppressed by heterologous expression of lecFGMI1000 and lecXGMI1000 in other Ralstonia strains that naturally lack these lectins. Crude ECM from a ΔlecF/X double mutant was more adhesive than the wild-type ECM, and LecF and LecX increased Rps attachment to ECM. The enhanced adhesiveness of the ΔlecF/X ECM could explain the double mutants hyper-attachment in static conditions. Unexpectedly, mutating lectins decreased Rps attachment and biofilm viscosity under shear stress, which this pathogen experiences in plant xylem. LecF, LecX, and EPS I were all essential for biofilm development in xylem fluid flowing through cellulose-coated microfluidic channels. These results suggest that under shear stress, LecF and LecX increase Rps attachment by interacting with the ECM and plant cell wall components like cellulose. In static conditions such as on root surfaces and in clogged xylem vessels, the same lectins suppress attachment to facilitate pathogen dispersal. Thus, Rps lectins have a dual biological function that depends on the physical environment.

Saponins are plant secondary metabolites comprising glycosylated triterpenoids, steroids or steroidal alkaloids with a broad spectrum of toxicity to microbial pathogens and pest organisms that contribute to basal plant defense to biotic attack. Secretion of glycosyl hydrolases that enzymatically convert saponins into less toxic products was thus far the only mechanism reported to enable fungal pathogens to colonize their saponin-containing host plant(s). We studied the mechanisms that the fungus Botrytis cinerea utilizes to be tolerant to well-characterized, structurally related saponins from tomato and Digitalis purpurea. By gene expression studies, comparative genomics, enzyme assays and testing a large panel of fungal (knockout and complemented) mutants, we unraveled four distinct cellular mechanisms that participate in the mitigation of the toxic activity of these saponins and in virulence on saponin-producing host plants. The enzymatic deglycosylation that we identified is novel and unique to this fungus-saponin combination. The other three tolerance mechanisms operate in the fungal membrane and are mediated by protein families that are widely distributed in the fungal kingdom. We present a spatial and temporal model on how these mechanisms jointly confer tolerance to saponins and discuss the repercussions of these findings for other plant pathogenic fungi, as well as human pathogens.

Plant pathogenic bacteria often have a narrow host range, which can vary among different isolates within a population. Here, we investigated the host range of the tomato pathogen Clavibacter michiganensis (Cm). We determined the genome sequences of 40 tomato Cm isolates and screened them for pathogenicity on tomato and eggplant. Our screen revealed that out of the tested isolates, five were unable to cause disease on any of the hosts, 33 were exclusively pathogenic on tomato, and two were capable of infecting both tomato and eggplant. Through comparative genomic analyses, we identified that the five non-pathogenic isolates lacked the chp/tomA pathogenicity island, which has previously been associated with virulence in tomato. In addition, we found that the two eggplant-pathogenic isolates encode a unique allelic variant of the putative serine hydrolase chpG (chpGC), an effector that is recognized in eggplant. Introduction of chpGC into a chpG inactivation mutant in the eggplant-non-pathogenic strain Cm101, failed to complement the mutant, which retained its ability to cause disease in eggplant and failed to elicit hypersensitive response (HR). Conversely, introduction of the chpG variant from Cm101 into an eggplant pathogenic Cm isolate (C48), eliminated its pathogenicity on eggplant, and enabled C48 to elicit HR. Our study demonstrates that allelic variation in the chpG effector gene is a key determinant of host range plasticity within Cm populations.

Tremendous plant metabolic diversity arises from phylogenetically restricted specialized metabolic pathways. Specialized metabolites are synthesized in dedicated cells or tissues, with pathway genes sometimes colocalizing in biosynthetic gene clusters (BGCs). However, the mechanisms by which spatial expression patterns arise and the role of BGCs in pathway evolution remain underappreciated. In this study, we investigated the mechanisms driving acylsugar evolution in the Solanaceae. Previously thought to be restricted to glandular trichomes, acylsugars were recently found in cultivated tomato roots. We demonstrated that acylsugars in cultivated tomato roots and trichomes have different sugar cores, identified root-enriched paralogs of trichome acylsugar pathway genes, and characterized a key paralog required for root acylsugar biosynthesis, SlASAT1-LIKE (SlASAT1-L), which is nested within a previously reported trichome acylsugar BGC. Last, we provided evidence that ASAT1-L arose through duplication of its paralog, ASAT1, and was trichome-expressed before acquiring root-specific expression in the Solanum genus. Our results illuminate the genomic context and molecular mechanisms underpinning metabolic diversity in plants.

BACKGROUND: Fungal plant pathogens have dynamic genomes that allow them to rapidly adapt to adverse conditions and overcome host resistance. One way by which this dynamic genome plasticity is expressed is through effector gene loss, which enables plant pathogens to overcome recognition by cognate resistance genes in the host. However, the exact nature of these loses remains elusive in many fungi. This includes the tomato pathogen Cladosporium fulvum, which is the first fungal plant pathogen from which avirulence (Avr) genes were ever cloned and in which loss of Avr genes is often reported as a means of overcoming recognition by cognate tomato Cf resistance genes. A recent near-complete reference genome assembly of C. fulvum isolate Race 5 revealed a compartmentalized genome architecture and the presence of an accessory chromosome, thereby creating a basis for studying genome plasticity in fungal plant pathogens and its impact on avirulence genes. RESULTS: Here, we obtained near-complete genome assemblies of four additional C. fulvum isolates. The genome assemblies had similar sizes (66.96 to 67.78 Mb), number of predicted genes (14,895 to 14,981), and estimated completeness (98.8 to 98.9%). Comparative analysis that included the genome of isolate Race 5 revealed high levels of synteny and colinearity, which extended to the density and distribution of repetitive elements and of repeat-induced point (RIP) mutations across homologous chromosomes. Nonetheless, structural variations, likely mediated by transposable elements and effecting the deletion of the avirulence genes Avr4E, Avr5, and Avr9, were also identified. The isolates further shared a core set of 13 chromosomes, but two accessory chromosomes were identified as well. Accessory chromosomes were significantly smaller in size, and one carried pseudogenized copies of two effector genes. Whole-genome alignments further revealed genomic islands of near-zero nucleotide diversity interspersed with islands of high nucleotide diversity that co-localized with repeat-rich regions. These regions were likely generated by RIP, which generally asymmetrically affected the genome of C. fulvum. CONCLUSIONS: Our results reveal new evolutionary aspects of the C. fulvum genome and provide new insights on the importance of genomic structural variations in overcoming host resistance in fungal plant pathogens.

Postharvest chilling injury (PCI) is a physiological disorder that often impairs tomato fruit ripening; this reduces fruit quality and shelf-life, and even accelerates spoilage at low temperatures. The CBF gene family confers cold tolerance in Arabidopsis thaliana, and constitutive overexpression of CBF in tomato increases vegetative chilling tolerance, in part by retarding growth, but, whether CBF increases PCI tolerance in fruit is unknown. We hypothesized that CBF1 overexpression (OE) would be induced in the cold and increase resistance to PCI. We induced high levels of CBF1 in fruit undergoing postharvest chilling by cloning it from S. lycopersicum and S. habrochaites, using the stress-inducible RD29A promoter. Harvested fruit were cold-stored (2.5°C) for up to three weeks, then rewarmed at 20°C for three days. Transgene upregulation was triggered during cold storage from 8.6- to 28.6-fold in SlCBF1-OE, and between 3.1- to 8.3-fold in ShCBF1-OE fruit, but developmental abnormalities in the absence of cold induction were visible. Remarkably, transgenic fruit displayed worsening of PCI symptoms, i.e., failure to ripen after rewarming, comparatively higher susceptibility to decay relative to wild-type (WT) fruit, lower total soluble solids, and the accumulation of volatile compounds responsible for off-odors. These symptoms correlated with CBF1 overexpression levels. Transcriptomic analysis revealed that the ripening and biotic and abiotic stress responses were altered in the cold-stored transgenic fruit. Seedlings grown from chilled and non-chilled WT fruit, in addition to non-chilled transgenic fruit were also exposed to 0°C to test their photosynthetic response to chilling injury. Chilled WT seedlings adjusted their photosynthetic rates to reduce oxidative damage; non-chilled WT seedlings did not. Photosynthetic parameters between transgenic seedlings were similar at 0°C, but SlCBF1-OE showed more severe photoinhibition than ShCBF1-OE, mirroring phenotypic observations. These results suggest that 1) CBF1 overexpression accelerated fruit deterioration in response to cold storage, and 2) Chilling acclimation in fructus can increase chilling tolerance in seedling progeny of WT tomato.

Tomato spotted wilt orthotospovirus (TSWV) causes substantial economic loss to tomato production, and the Sw-5b resistance gene is widely deployed for management. Here, we show (i) the emergence of resistance-breaking (RB) TSWV strains in processing and fresh market tomato production in California over the past ten years, and (ii) evolutionary relationships with RB strains from other areas. A specific RT-PCR test was used to show the C118Y RB strain that emerged in Fresno County in 2016 quickly became predominant in the central production area and remained so through this study. In 2021, the C118Y strain was detected in the Northern production area, and was predominant in 2022. However, in 2023, the C118Y strain was unexpectedly detected in fewer spotted wilt samples from resistant varieties. This was due to emergence of the T120N RB strain, previously known to occur in Spain. A specific RT-PCR test was developed and used to show that the T120N RB strain was predominant in Colusa and Sutter counties (detected in 75-80% of samples), and detected in ~50% of samples from Yolo County. Pathogenicity tests confirmed California isolates of the T120N strain infected Sw-5b tomato varieties and induced severe symptoms. Another RB strain, C118F, was associated with spotted wilt samples of Sw-5 varieties from fresh market tomato production in southern California. Phylogenetic analyses with complete NSm sequences revealed that the C118Y and T120N RB strains infecting resistant processing tomato in California emerged locally, whereas those from fresh market production were more closely related to isolates from Mexico. Thus, widespread deployment of this single dominant resistance gene in California has driven the local emergence of multiple RB strains in different tomato production areas and types. These results further emphasize the need for ongoing monitoring for RB strains, and identification of sources of resistance to these strains.

Plant roots integrate environmental signals with development using exquisite spatiotemporal control. This is apparent in the deposition of suberin, an apoplastic diffusion barrier, which regulates flow of water, solutes and gases, and is environmentally plastic. Suberin is considered a hallmark of endodermal differentiation but is absent in the tomato endodermis. Instead, suberin is present in the exodermis, a cell type that is absent in the model organism Arabidopsis thaliana. Here we demonstrate that the suberin regulatory network has the same parts driving suberin production in the tomato exodermis and the Arabidopsis endodermis. Despite this co-option of network components, the network has undergone rewiring to drive distinct spatial expression and with distinct contributions of specific genes. Functional genetic analyses of the tomato MYB92 transcription factor and ASFT enzyme demonstrate the importance of exodermal suberin for a plant water-deficit response and that the exodermal barrier serves an equivalent function to that of the endodermis and can act in its place.

BACKGROUND RESULTS CONCLUSION Agronomic uses of biochar have been intensely explored in the last 15 years. Recently, a new generation of biochar‐based fertilizers has been developed. Raw biochar (BCH), nitrogen‐enriched biochar (N + BCH) or urea were added to a coir fiber‐based substrate for tomato cultivation, to assess seed germination, growth and fruiting of two cultivars (Cuarenteno and Moneymaker).BCH stimulated seed germination and early radicle growth, possibly because of the presence of karrikins detected in both BCH and N‐BCH (0.039 and 0.044 mg kg−1, respectively). However, BCH reduced growth in adult plants in both cultivars, probably because of ammonium retention, causing low‐N‐stress‐related symptoms such as accumulation of flavonoids in the leaf. Urea was toxic for seed germination because of the fast release of ammonium, but caused a positive effect on adult plant growth and yield, increasing chlorophyll in both cultivars, quantum yield and ascorbic acid in cv. Cuarenteno, and decreasing flavonoids and peroxide in leaves of both cultivars. Unlike urea, N + BCH showed a positive impact on plant growth and yield, but without releasing high amounts of ammonium or negatively affecting seed germination. Nitrogen‐rich amendments reduced phosphorus and increased iron leaf content in both cultivars.BCH can be effectively used as a growth medium constituent in nurseries for seedling production, whereas N + BCH offers a promising alternative to urea or other nitrogen mineral fertilizers for crop cultivation. © 2024 The Author(s). Journal of the Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

Background: The polyphagous notorious pest, black cutworm, Agrotis ipsilon (Hufnagel) (Lepidoptera: Noctuidae), cause significant production losses due to its distinctive feeding and hiding behavior, making it particularly challenging to control it with conventional methods. Therefore, sustainable agriculture demands more effective and environmentally safe pest control solutions. This study aimed to investigate the toxicity of two insecticide alternatives, the entomopathogenic fungus (EPF) Beauveria bassiana and Solanum lycopersicum extract (Tomato plant crude extract, TPCE), using two bioassay methods: the poisoned bait method and the leaf dipping method. In addition, the impact of these biological tools on larval development and protein profiles was evaluated. Results: The bait application of both tested materials exhibited higher toxicity than the leaf dipping method, as indicated by the toxicity index. The LC50 values for B. bassiana were 1.6 × 10⁸ and 1.8 × 10⁶ conidia ml−1 using the leaf dipping method and poisoned baits method, respectively. For TPCE, the LC50 values were 4.35 and 1.51 mg ml−1 for the same methods, respectively. In addition, sublethal concentrations of both materials altered the larval and pupal durations. B. bassiana significantly reduced the concentration of larval hemolymph protein. A maximum of 12 protein bands in the control sample, with molecular weights (Mw) ranging between 35 and 120 kDa, were detected by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE). In B. bassiana-treated larvae, ten bands were detected with Mw ranging from 35 to 120 kDa. At least seven bands were detected in TPCE-treated larvae, with Mw ranging from 35 to 97 kDa. Conclusions: The findings of this study can be integrated into management programs for A. ipsilon. In addition, the availability of B. bassiana and TPCE in Egypt and their cost-effectiveness as insecticide alternatives support their use in the management programs of this critical pest. These methods are particularly effective when applied in bait form. [ABSTRACT FROM AUTHOR]

Electron beam (EB) technology typically consists of high‐energy electron streams produced by a linear accelerator. Although promising, the use of EB irradiation as a technique to delay ripening and prevent spoilage in tomatoes has not been extensively investigated. In this study, the effectiveness of EB irradiation in prolonging the shelf life of tomatoes postharvest was investigated. The results indicated that EB irradiation successfully reduced microbial contamination and decay, preserved key quality attributes (such as total soluble solids, titratable acidity, pH, and firmness), and significantly minimized weight loss. Notably, the treatment delayed the biosynthesis of lycopene, a key indicator of ripening, without adversely affecting phenolic content and antioxidant activity, which remained consistent regardless of irradiation. Additionally, different methods for detecting irradiation were evaluated. Thermoluminescence analysis proved to be the most dependable technique, especially for doses exceeding 600 Gy, due to its high sensitivity and specificity. In contrast, photostimulated luminescence and electron spin resonance analyses showed limitations in accurately identifying the irradiation status of foods with high moisture content, such as tomatoes. This study confirms that EB irradiation, while maintaining postharvest quality, extends the shelf life of tomatoes by 5–10 days, suggesting its potential for commercial application in food preservation. [ABSTRACT FROM AUTHOR]

SUMMARY: Cold stress restricts the metabolic and physiological activities of plants, thereby affecting their growth and development. Although broad‐complex, tramtrack, and bric‐à‐brac (BTB) proteins are essential for diverse biological processes and stress responses, the mechanisms underlying BTB‐mediated cold responses remain not fully understood. Here, we characterize the function of the cold‐induced SlBTB19 protein in tomato (Solanum lycopersicum). Overexpression of SlBTB19 resulted in increased plant sensitivity to cold stress, whereas SlBTB19 knockout mutants exhibited a cold‐tolerance phenotype. Further analyses, including protein–protein interaction studies and cell‐free degradation assays, revealed that SlBTB19 interacts with and destabilizes the transcription factor SlWRKY2. Using virus‐induced gene silencing (VIGS) to silence SlWRKY2 in both wild‐type and slbtb19 mutants, we provided genetic evidence that SlWRKY2 acts downstream of SlBTB19 in regulating cold tolerance. Importantly, we demonstrated that SlWRKY2 positively regulates cold tolerance in a CRT/DRE binding factor (CBF)‐dependent manner. Under cold stress, SlWRKY2 binds to the W‐box in the CBF1 and CBF3 promoters, directly activating their expression. In summary, our findings identify a SlBTB19‐SlWRKY2 module that negatively regulates the CBF‐dependent cold tolerance pathway in tomato. Significance Statement: Our findings not only contribute to the broader understanding of the molecular basis of plant responses to cold stress but also highlight the importance of post‐transcriptional mechanisms in regulating these responses. In summary, we proposed an updated model: A cold‐induced BTB family protein SlBTB19 negatively regulates cold tolerance. SlBTB19 interacts with and facilitates the proteolysis of the SlWRKY2 protein. SlWRKY2 is a positive regulator of cold tolerance, which activates cold‐responsive genes SlCBFs. [ABSTRACT FROM AUTHOR]

To understand whether domestication had an impact on susceptibility and responsiveness to arbuscular mycorrhizal fungi (AMF) in tomato (Solanum lycopersicum), we investigated two tomato cultivars ("M82" and "Moneymaker") and a panel of wild relatives including S. neorickii, S. habrochaites and S. pennellii encompassing the whole Lycopersicon clade. Most genotypes revealed good AM colonisation levels when inoculated with the AMF Funneliformis mosseae. By contrast, both S. pennellii accessions analysed showed a very low colonisation, but with normal arbuscule morphology, and a negative response in terms of root and shoot biomass. This behaviour was independent of fungal identity and environmental conditions. Genomic and transcriptomic analyses revealed in S. pennellii the lack of genes identified within QTLs for AM colonisation, a limited transcriptional reprogramming upon mycorrhization and a differential regulation of strigolactones and AM‐related genes compared to tomato. Donor plants experiments indicated that the AMF could represent a cost for S. pennellii: F. mosseae could extensively colonise the root only when it was part of a mycorrhizal network, but a higher mycorrhization led to a higher inhibition of plant growth. These results suggest that genetics and functional traits of S. pennellii are responsible for the limited extent of AMF colonisation. Summary Statement: Contrary to our hypothesis (domesticated plants are less dependent on mycorrhization than their wild relatives), we found a very low AM colonisation and a negative growth response in Solanum pennelli. Genetic and functional traits were identified as responsible for the limited colonisation success. [ABSTRACT FROM AUTHOR]

Plant viruses exist in a broader ecological community that includes non-vector herbivores that can impact vector abundance, behavior, and virus transmission within shared host plants. However, little is known about the effects of non-vector herbivore infestation on virus transmission by vector insects on neighboring plants through inter-plant airborne chemicals. In this study, we investigated how volatiles emitted from tomato plants infested with the two-spotted spider mite (Tetranychus urticae) affect the infection of neighboring plants by tomato yellow leaf curl virus (TYLCV) transmitted by whitefly (Bemisia tabaci). Exposure of neighboring tomato plants to volatiles released from T. urticae -infested tomato plants reduced subsequent herbivory as well as TYLCV transmission and infection, and the jasmonic acid signaling pathway was essential for generation of the inter-plant defense signals. We also demonstrated that (E)-β-ocimene and methyl salicylic acid were two volatiles induced by T. urticae that synergistically attenuated TYLCV transmission and infection in tomato. Thus, our findings suggest that plant–plant communication via volatiles likely represents a widespread defensive mechanism that substantially contributes to plant fitness. Understanding such phenomena may help us to predict the occurrence and epidemics of multiple herbivores and viruses in agroecosystems, and ultimately to manage pest and virus outbreaks. [ABSTRACT FROM AUTHOR]

Background: Dirigent (DIR) genes play a key role in the development of organic products in plants. They confer conformational influence on processes that lack stereoselectivity and regioselectivity through processes that are mostly understood. They are required to produce lignans, which are a unique and widely distributed family of plant secondary metabolites with intriguing pharmacological characteristics and potential role in plant development. DIR genes are implicated in the process of lignification and protect plants from environmental stresses, including biotic and abiotic stresses. Nevertheless, no research has been performed on the DIR gene family in Solanum lycopersicum. This study provides detailed information on the DIR gene family in S. lycopersicum. Methods and results: The conserved domain analysis, phylogenetic analysis, evolutionary adaptation, cis-acting elements, proteomic analysis, signal peptide detection, transmembrane potential analysis, sequence identity and similarity analysis, gene assembly, genomic localization, duplication of gene analysis, and evolutionary linkage of 31 potential DIR genes were studied. All these analyses provide a deep understanding of DIR genes in the S. lycopersicum genome that will provide a useful reference for further functional analysis of the DIR genes in S. lycopersicum. Conclusion: This research provides an in-depth and comprehensive explanation of the detailed process and structural characterization of DIR genes in the genome of S. lycopersicum, laying the groundwork for future plant genetic engineering and crop development exploration. This work will provide valuable information for identifying DIR genes in higher plants and support future research on the DIR gene family. [ABSTRACT FROM AUTHOR]

SUMMARY: Long non‐coding RNAs (lncRNAs) play crucial roles in various biological processes in plants. However, the functional mechanism of lncRNAs in fruit ripening, particularly the transition from unripe to ripe stages, remains elusive. One such lncRNA1840, reported by our group, was found to have important role in tomato fruit ripening. In the present study, we gain insight into its functional role in fruit ripening. CRISPR‐Cas9 mediated lncRNA1840 mutants caused the delayed tomato fruit ripening. Notably, loss function of lncRNA1840 did not directly impact ethylene signaling but rather delay ethylene synthesis. Transcriptomic analysis revealed differences in the expression of ripening related genes in lncRNA1840 mutants, suggesting that it is involved in gene regulation of fruit ripening. We used Chromatin Isolation by RNA Purification (ChIRP)‐Seq to identify lncRNA1840 binding sites on chromatin. ChIRP‐seq suggested that lncRNA1840 had occupancy on 40 genes, but none of them is differentially expressed genes in transcriptomic analysis, which indicated lncRNA1840 might indirectly modulate the gene expression. ChIRP‐mass spectrometry analysis identified potential protein interactors of lncRNA1840, Pre‐mRNA processing splicing factor 8, highlighting its involvement in post‐transcriptional regulatory pathways. In summary, lncRNA1840 is key player in tomato plant growth and fruit ripening, with multifaceted roles in gene expression and regulatory networks. Significance Statement: Long non‐coding RNAs (lncRNAs) play important roles in various biological processes in plants, but the mechanism of action of lncRNAs during fruit ripening remains unexplored. lncRNA1840 was identified in tomato, which confirmed that it affected the ripening process of tomato fruit and achieved post‐transcriptional regulation by participating in alternative splicing, which improved the regulatory network of tomato fruit ripening and filled the gap of lncRNA in the field of fruit ripening. [ABSTRACT FROM AUTHOR]

Recently, there has been significant consumer demand for traditional tomato varieties due to their favourable organoleptic qualities; however, the cultivation of these ancient varieties is becoming more restricted due to inadequate shelf life and low productivity. The "Pisanello" is a Tuscany tomato variety mainly cultivated in the provinces of Pisa, Lucca, and Livorno, and the main producers of this ancient tomato are small local farmers. The purpose of this work was, firstly, to study the range of quality parameters of this landrace tomato grown using different cultivation techniques, both in soil and soilless systems. For this purpose, the physicochemical parameters of Pisanello tomatoes grown in six different farms in Tuscany using both soilless and soil methods were investigated. Secondly, Pisanello tomatoes grown using different soilless techniques (rockwool and aeroponics) and soil-grown tomatoes (Pisanello and Goldmar F1) were evaluated from organoleptic and nutraceutical points of view. The sensory profile evaluation of all types of tomatoes under investigation was carried out. The aeroponic cultivation of Pisanello induced higher organoleptic qualities than those of tomatoes cultivated in rockwool (+34% for titratable acidity and +18% for total soluble solids). On the other hand, soilless rockwool-grown tomatoes showed a better sensory profile with respect to aeroponic cultivation. Nevertheless, the Goldmar F1 tomato, morphologically similar to 'Pisanello', received lower scores from the sensory panel compared to the Tuscany landrace tomato. This indicates that ancient tomato varieties selected over decades remain the preferred choice for consumers. Therefore, from a long-term viewpoint, the valorisation of local tomato varieties such as Pisanello can promote the regional commercialization of novel niche products originating from ancient fruit thanks to their acceptability by consumers. [ABSTRACT FROM AUTHOR]

Late blight (LB), caused by oomycete Phytophthora infestans, is one of the most destructive diseases of the cultivated tomato, Solanum lycopersicum. Since new and aggressive clonal lineages of P. infestans, many of which overcoming formerly effective fungicides or host resistance genes, have continued to emerge, it is crucial to identify, characterize, and utilize new sources of host resistance in tomato breeding. A recent screening of tomato germplasm identified Solanum pimpinellifolium accession PI 224710 with very strong resistance to several current P. infestans clonal lineages. The present study aimed to identify and characterize QTLs associated with LB resistance in PI 224710. Disease screening of a large F2 population (n = 1721), derived from a cross between PI 224710 and LB-susceptible tomato breeding line Fla. 8059, followed by F3 progeny testing, resulted in the identification of 43 highly-resistant and 27 highly-susceptible F2 individuals. A selective genotyping approach, using 469 non-identical SNP markers, resulted in the construction of a genetic linkage map and identification of three LB-resistance QTLs on chromosomes 6, 9 and 10 of PI 224710. A comparison of the QTLs genomic locations with the tomato physical map resulted in the identification of several candidate genes, which might be underpinning the LB-resistance QTLs in PI 224710. The identified markers associated with the LB-resistance QTLs can be utilized in breeding programs to transfer resistance from PI 224710 into tomato breeding lines and hybrid cultivars via marker-assisted breeding; they also can be used to develop near-isogenic lines for fine mapping of the QTLs. [ABSTRACT FROM AUTHOR]

The plant-specific IDD transcription factors (TFs) are vital for regulating plant growth and developmental processes. However, the characteristics and biological roles of the IDD gene family in tomato (Solanum lycopersicum) are still largely unexplored. In this study, 17 SlIDD genes were identified in the tomato genome and classified into seven subgroups according to the evolutionary relationships of IDD proteins. Analysis of exon–intron structures and conserved motifs reflected the evolutionary conservation of SlIDDs in tomato. Collinearity analysis revealed that segmental duplication promoted the expansion of the SlIDD family. Ka/Ks analysis indicated that SlIDD gene orthologs experienced predominantly purifying selection throughout evolution. The analysis of cis-acting elements revealed that the promoters of SlIDD genes contain numerous elements associated with light, plant hormones, and abiotic stresses. The RNA-seq data and qRT-PCR experimental results showed that the SlIDD genes exhibited tissue-specific expression. Additionally, Group A members from Arabidopsis thaliana and rice are known to play a role in regulating plant shoot gravitropism. QRT-PCR analysis confirmed that the expression level of SlIDD15 in Group A was high in the hypocotyls and stems. Subcellular localization demonstrated that the SlIDD15 protein was localized in the nucleus. Surprisingly, the loss-of-function of SlIDD15 by CRISPR/Cas9 gene editing technology did not display obvious gravitropic response defects, implying the existence of functional redundant factors within SlIDD15. Taken together, this study offers foundational insights into the tomato IDD gene family and serves as a valuable guide for exploring their molecular mechanisms in greater detail. [ABSTRACT FROM AUTHOR]

In the United States, the annual revenue attributable to tomato production is $1 billion. However, tomato production can cause negative environmental impacts, such as water pollution, often in the form of eutrophication-causing nutrient pollution. Hydroponic production can decrease excess nutrient leaching; however, optimization of nutrient management and cultivar choices could further decrease excess nutrient discharges. The objectives of this study were as follows: to evaluate and compare the responses of tomato growth characteristics, yield, and yield components to two nutrient management regimes (varying nutrient solution concentrations by growth stage and the use of a constant nutrient solution concentration from transplant to termination), and to analyze the effects of growth habits among six cultivars (Big Beef, Cherokee Purple, Heatmaster, Legend, Mountain Fresh Plus, and Tropic) on tomato yield and yield-correlated morphological characteristics. The nutrient management strategies were applied to tomato plants, and data regarding yield and related morphological characteristics were obtained. Data were analyzed using SAS PROC GLM. An analysis revealed no significant difference in the total fruit weight/plant between nutrient management regimes (P 5 0.05); however, the mean fruit weight (164.26 g) and diameter (71.70 mm) were significantly greater (P < 0.0001) for plants that received the constant concentration nutrient regime. Indeterminate plants had a significantly greater (P < 0.0001) mean fruit weight (192.76 g) and mean fruit diameter (76.42 mm). Among cultivars, Big Beef had a significantly greater (P < 0.05) total fruit weight/plant (9.25 kg). Applying a constant nutrient concentration to indeterminate cultivars, particularly Big Beef and Cherokee Purple, improved the factors analyzed and could decrease negative environmental impacts while increasing profits of the producers. [ABSTRACT FROM AUTHOR]

The circadian dynamics of the expression of key genes of carotenoid metabolism (PSY2, LCYE, CrtRB1, and NCED1) in the photosynthetic tissue of tomato Solanum lycopersicum L. (cultivar Korneevsky) plants was characterized. An in silico analysis of the gene expression pattern was carried out and a high level of their transcripts was detected in the leaf tissue. qRT-PCR analysis of gene expression was performed at six time points during the day and showed the highest levels of PSY2, LCYE, and NCED1 transcripts in the second half of the light phase and CrtRB1 at the end of the dark phase. The content and composition of carotenoids in leaf tissue in the middle of the day was determined; it was shown that the leaf accumulates 1.5 times more compounds of the ɛ/β-branch of carotenoid biosynthesis pathway than compounds of the β/β-branch. [ABSTRACT FROM AUTHOR]

Micro-Tom is a cultivar of tomato (Solanum lycopersicum), which is known as a major crop and model plant in Solanaceae. Micro-Tom has phenotypic traits such as dwarfism, and substantial EMS-mutagenized lines have been reported. After Micro-Tom was generated in Florida, USA, it was distributed to research institutes worldwide and used as a genetic resource. In Japan, the Micro-Tom lines have been genetically fixed; currently, three lines have been re-distributed from three institutes, but many phenotypes among the lines have been observed. We have determined the genome sequence de novo of the Micro-Tom KDRI line, one of the Micro-Tom lines distributed from Kazusa DNA Research Institute (KDRI) in Japan, and have built chromosome-scale pseudomolecules. Genotypes among six Micro-Tom lines, including three in Japan, one in the United States, one in France, and one in Brazil showed phenotypic alternation. Here, we unveiled the swift emergence of genetic diversity in both phenotypes and genotypes within the Micro-Tom genome sequence during its propagation. These findings offer valuable insights crucial for the management of bioresources. [ABSTRACT FROM AUTHOR]

Purpose: To understand the effect of organic wastes as fertilizer and weed management on the growth and fruit yield of tomatoes to recommend the best organic waste fertilizer and weed management practices for the production of this crop in a derived savannah agro-ecology zone of Nigeria. Method: The experiment was conducted in Nsukka, Nigeria where the climate is characterized by mean annual rainfall of about 1600 mm, with a bimodal distribution pattern that peaks in July and October. The mean minimum and maximum temperatures are 21 °C and 31 °C, respectively. The relative humidity varies yearly, often in the range of 55-90%. The treatment is comprised of organic animal wastes as manure types which include: 20 t/ha of poultry manure, 20 t/ha of Pig dung, zero manure application(control), and 5 weed management practices: sawdust cover (17,000 tons/ha), rice husk mulch (23,000 tons/ha), black polyethylene mulch, hoe weeding, and weedy check. The treatment was laid out in a 3 × 5 factorial arrangement in a randomized complete block design with three replications. Results: Among the mulch materials used, rice husk plots consistently recorded the highest tomato fruit yield per hectare (34, 222.0 tons/ha). On the organic wastes, the pig dung treatment performed better than others used, the yield recorded per hectare was (15,533.0 tons/ha) for the tomatoes. Conclusion: The research found out that the use of pig dung should be adopted as well as the use of rice husk mulch on the soil surface as weed management practices to improve yield of tomatoes. [ABSTRACT FROM AUTHOR]

Background: To counteract soil degradation, it is important to convert conventional agricultural practices to environmentally sustainable management practices. To this end, the application of biostimulants could be considered a good strategy. Compost, produced by the composting of biodegradable organic compounds, is a source of natural biostimulants, such as humic acids, which are naturally occurring organic compounds that arise from the decomposition and transformation of organic residues, and compost tea, a compost-derived liquid formulated produced by compost water-phase extraction. This study aimed to determine the molecular responses of the roots of tomato plants (cv. Crovarese) grown under hydroponic conditions and subjected to biostimulation with humic substances (HSs) and filtered sterile compost tea (SCT). Results: The 13C CPMAS NMR of humic acids (HA) and SCT revealed strong O-alkyl-C signals, indicating a high content of polysaccharides.Thermochemolysis identified over 100 molecules, predominantly from lignin, fatty acids, and biopolymers. RNA-Seq analysis of tomato roots treated with HA or SCT revealed differentially expressed genes (DEGs) with distinct patterns of transcriptional reprogramming. Notably, HA treatment affected carbohydrate metabolism and secondary metabolism, particularly phenylpropanoids and flavonoids, while SCT had a broader impact on hormone and redox metabolism. Both biostimulants induced significant gene expression changes within 24 h, including a reduction in cell wall degradation activity and an increase in the expression of hemicellulose synthesis genes, suggesting that the treatments prompted proactive cell wall development. Conclusions: The results demonstrate that HS and SCT can mitigate stress by activating specific molecular mechanisms and modifying root metabolic pathways, particularly those involved in cell wall synthesis. However, gene regulation in response to these treatments is complex and influenced by various factors. These findings highlight the biostimulatory effects of HS and SCT, suggesting their potential application in crop biofertilization and the development of innovative breeding strategies to maximize the benefits of humic substances for crops. Further research is needed to fully elucidate these mechanisms across various contexts and plant species. [ABSTRACT FROM AUTHOR]

SUMMARY: Type 2C protein phosphatases (PP2Cs) are emerging as important regulators of plant immune responses, although little is known about how they might impact nucleotide‐binding, leucine‐rich repeat (NLR)‐triggered immunity (NTI). We discovered that expression of the PP2C immunity‐associated candidate 14 gene (Pic14) is induced upon activation of the Pto/Prf‐mediated NTI response in tomato. Pto/Prf recognizes the effector AvrPto translocated into plant cells by the pathogen Pseudomonas syringae pv. tomato (Pst) and activate a MAPK cascade and other responses which together confer resistance to bacterial speck disease. Pic14 encodes a PP2C with an N‐terminal kinase‐interacting motif (KIM) and a C‐terminal phosphatase domain. Upon inoculation with Pst‐AvrPto, Pto/Prf‐expressing tomato plants with loss‐of‐function mutations in Pic14 developed less speck disease, specifically in older leaves, compared to wild‐type plants. Transient expression of Pic14 in leaves of Nicotiana benthamiana and tomato inhibited cell death typically induced by Pto/Prf and the MAPK cascade members M3Kα and Mkk2. The cell death‐suppressing activity of Pic14 was dependent on the KIM and the catalytic phosphatase domain. Pic14 inhibited M3Kα‐ and Mkk2‐mediated activation of immunity‐associated MAPKs and Pic14 was shown to be an active phosphatase that physically interacts with and dephosphorylates Mkk2 in a KIM‐dependent manner. Together, our results reveal Pic14 as an important negative regulator of Pto/Prf‐triggered immunity by interacting with and dephosphorylating Mkk2. [ABSTRACT FROM AUTHOR]

The Mi-1.2 gene confers resistance to a wide range of Meloidogyne species, being the most important resistance factor employed in tomato breeding so far. However, many aspects related to the interaction of Mi-1.2-carrying tomato cultivars and virulent/avirulent Meloidogyne populations have not yet been clarified. Herein, comparative histopathological analyses were carried after inoculation of the homozygous (Mi-1.2/Mi-1.2) tomato rootstock 'Guardião' and the susceptible cultivar 'Santa Clara' (mi-1.2/mi-1.2) with virulent and avirulent populations of M. javanica. In the susceptible control, it was possible to visualize second stage juveniles (J2) of avirulent population and feeding sites from 2 to 30 days after infection (DAI) with females reaching maturity at 24-34 DAI. In the resistant rootstock, the Mi-1.2 gene-mediated resistance was related mainly to early defense responses (pre-infection and hypersensitive reaction), which led to an immunity-like phenotype that completely prevented the reproduction of the avirulent Meloidogyne population. On the other hand, J2s of the virulent M. javanica population were able to penetrate roots much more than the avirulent population, migrated and developed normally, showing intense and similar pattern of penetration from 4 to 34 DAI in the root tissues of both resistant and susceptible tomato genotypes. The total numbers of J2, J3, J4, and females counted in 'Santa Clara' for the virulent population of M. javanica were higher than in 'Guardião'. [ABSTRACT FROM AUTHOR]

Leveillula taurica has until recently been believed to be the causal pathogen of powdery mildew of tomatoes in Mauritius. However, in the year 2022, another powdery mildew species was detected on tomatoes under culture in various tomato growing localities of the island. Based on morphological comparison and molecular analysis, its identity was confirmed as Erysiphe neolycopersici (anam. Pseudoidium neolycopersici). This species has a worldwide distribution causing severe epidemics mainly on greenhouse tomatoes. There is evidence of the rapid spread of this pathogen during 2022–2023 causing serious infection of all tomato cultivars in greenhouse culture in Mauritius. The origin of these infections and its epidemiological consequences are discussed. [ABSTRACT FROM AUTHOR]

The use of microbial seed priming may be a promising tool to improve the first stages of seed germination of several herbaceous species. In tomatoes (Solanum lycopersicum L.), enhanced germination and vigor, and biotic and abiotic stress control, with a reduction in chemicals, have been reported. In this study, seeds from two Italian tomato varieties (Canestrino di Lucca and Pisanello) were primed with seven different strains of plant growth-promoting rhizobacteria (PGPB) belonging to Azospirillum baldaniorum, A. brasilense, Methylobacterium symbioticum, Bacillus amyloliquefaciens, B. licheniformis, and B. subtilis. They were selected for their ability to produce auxin. The germination test was carried out on treated seeds and the germination percentage was calculated. The obtained seedlings were transplanted and kept in greenhouse conditions. After 60 d, fresh and dry weight, root number, and length of plantlets were recorded. A general and significant improvement in the growth parameters was observed in the treated plants. All microbial strains proved to be indolacetic acid (IAA) producers using the Salkowsky method. A positive relationship between root number and length, and amount of IAA was found. The overall results suggest that the microbial priming of tomato seed could be useful for advancing organic farming, sustainable agriculture, and environmental protection. [ABSTRACT FROM AUTHOR]

Plant pathologies significantly jeopardise global food security, necessitating the development of prompt and precise diagnostic methods. This study employs advanced deep learning techniques to evaluate the performance of nine convolutional neural networks (CNNs) in identifying a spectrum of phytosanitary issues affecting the foliage of Solanum lycopersicum (tomato). Ten thousand RGB images of leaf tissue were subsampled in training (64%), validation (16%), and test (20%) sets to rank the most suitable CNNs in expediting the diagnosis of plant disease. The study assessed the performance of eight well-known networks under identical hyperparameter conditions. Additionally, it introduced the GamaNNet architecture, a custom-designed model optimised for superior performance on this specific type of dataset. The investigational results were most promising for the innovative GamaNNet and ResNet-152, which both exhibited a 91% accuracy rate, as evidenced by their confusion matrices, ROC curves, and AUC metrics. In comparison, LeNet-5 and ResNet-50 demonstrated lower assertiveness, attaining accuracies of 74% and 69%, respectively. GoogLeNet and Inception-v3 emerged as the frontrunners, displaying diagnostic preeminence, achieving an average F1-score of 97%. Identifying such pathologies as Early Blight, Late Blight, Corynespora Leaf Spot, and Septoria Leaf Spot posed the most significant challenge for this class of problem. [ABSTRACT FROM AUTHOR]

Most of the tomato (Solanum lycopersicum) varieties currently used in organic farming were bred for conventional farming, often characterized by high-input use. These varieties do not perform as well in low-input organic systems, generating the need to develop varieties that are adapted to organic management systems. This project focused on improving flavor, disease resistance, and yield, all identified as key traits by organic tomato farmers in the Upper Midwest, USA. Ten advanced tomato breeding lines and two check varieties were developed and evaluated for 16 traits in organic high tunnel systems in 2020 and 2021. The line CSDE-F6.47 averaged 6.32 kg/plant and obtained high flavor intensity and overall flavor scores (3.78 and 3.69 out of 5, respectively). The line JBDE-F5.31 was another outstanding line, with a yield of 5.18 kg/plant, with good flavor intensity (3.32) and overall flavor (2.92) scores. Broad-sense heritability of marketable weight per plant was high (0.91), and the genetic variance was also high, which shows the opportunity to continue to increase the marketable weight in lines with excellent flavor. A significant positive correlation was found between overall flavor and °Brix (0.56), and titratable acidity (0.70), indicating that both measurements can be good predictors of overall flavor. The most promising lines will be further evaluated on-farm to evaluate their potential as releasable varieties. [ABSTRACT FROM AUTHOR]

The sweet potato whitefly, Bemisia tabaci MED (Gennadius) (Hemiptera: Aleyrodidae), is highly harmful to solanaceous crops. The use of essential oils (EOs) is promising for the management of several insect pests, promoting both lethal and sublethal effects. This study aimed to evaluate the effects of sublethal concentrations of Pelargonium graveolens L'Her (Geraniaceae) EO on the feeding behavior of B. tabaci MED on tomato plants (Solanum lycopersicum L., Solanaceae). For this research, the electrical penetration graph (EPG) technique was used to monitor whitefly stylet activities on their host plants. Two sets of plants were previously sprayed with two concentrations of EO (the LC25 and LC50, which were determined in a mortality test), a third set was treated with the insecticide cyantraniliprole, and a fourth set received a control treatment. Our results indicate that the insecticide cyantraniliprole and the EO could both reduce the stylet feeding activity of B. tabaci MED, as well as reduce the number and duration of phloem sap ingestion events (waveform E2), which could avoid or reduce the transmission of viruses. Thus, the application of sublethal concentrations of P. graveolens EO, as well as exposure to cyantraniliprole, negatively affected the feeding behavior of B. tabaci MED. This information may contribute to the management of this pest and the reduction of the incidence of viruses in tomato production. [ABSTRACT FROM AUTHOR]

Global exploration of nanoparticles as nano-fertilizers/nano-fungicides to optimize crop production has attracted greater attention. Among metal oxide nano-formulations, the increasing application and discharge of copper oxide nanoparticles (CuO-NPs) into the environment requires urgent attention due to their toxic and stimulatory impact on plants, including vegetables. This study aimed at the bio-fabrication of CuO-NPs from Rosa indica petal extracts and to assess their nanotoxicity on germination and biological and biochemical growth of tomato plants. The morphological characterization of phytofabricated CuO-NPs by microscopic (SEM/TEM) and spectroscopic (XRD/FTIR) techniques revealed its nanostructure, spherical shape ranging in size between 23 and 47 nm exhibiting different functional groups. Furthermore, tomato-CuO-NPs interactions resulted in reduced germination percentage and plant biomass. At the biochemical level, the chlorophyll content decreased consistently, while malonaldehyde and proline content in tomato foliage enhanced substantially with increasing concentrations of CuO-NPs. Size, lycopene content (71 % reduction), and fruit quality (metabolites like sugars, amino acids, and organic acids) assessed by 1H NMR declined after CuO-NPs exposure in a dose-dependent manner. Further in situ experiments revealed deformation in a stomatal aperture in leaves and accumulation of CuO-NPs in roots, suggesting toxicity under SEM. In summation, this study highlights the toxicity of biosynthesized CuO-NPs to tomato plants paving the way to develop novel strategies to mitigate its toxicity to vegetable crops, particularly tomato under real field conditions. [Display omitted] • Copper oxide nanoparticles (CuO-NPs) exhibit toxic and stimulatory effects on plants. • Biogenic synthesized CuO-NPs from Rosa indica petal extract shows phytotoxicity to tomato plants. • Exposure to CuO-NPs reduces germination percentage, plant biomass, and fruit quality. • Metal oxide nanoparticles increase malondialdehyde and proline content after CuO-NPs exposure. • Strategies need to be developed to counteract nano-CuO toxicity. [ABSTRACT FROM AUTHOR]

RNA interference (RNAi) is a regulatory and protective mechanism that plays a crucial role in the growth, development, and control of plant responses to pathogens and abiotic stresses. In spray-induced gene silencing (SIGS), exogenous double-stranded RNAs (dsRNA) are used to efficiently regulate target genes via plant surface treatment. In this study, we aimed to evaluate the effect of specific exogenous dsRNAs on silencing different regions (promoter, protein-coding and intron) of the target SlTRY tomato gene, encoding an R3-type MYB repressor of anthocyanin biosynthesis. We also assessed the impact of targeting different SlTRY regions on the expression of genes involved in anthocyanin and flavonoid biosynthesis. This study demonstrated the critical importance of selecting the appropriate gene target region for dsRNA action. The highest inhibition of the SlTRY gene expression and activation of anthocyanin biosynthesis was achieved by dsRNA complementary to the protein-coding region of SlTRY gene, compared with dsRNAs targeting the SlTRY promoter or intron regions. Silencing the SlTRY gene increased the content of anthocyanins and boosted levels of other substances in the phenylpropanoid pathway, such as caffeoyl putrescine, chlorogenic acid, ferulic acid glucoside, feruloyl quinic acid, and rutin. This study is the first to examine the effects of four different dsRNAs targeting various regions of the SlTRY gene, an important negative regulator of anthocyanin biosynthesis. [ABSTRACT FROM AUTHOR]

When applied under abiotic stress conditions, triacontanol (TRIA) is effective in regulating the physicochemical processes in plants through mechanisms of defence such as abscisic acid (ABA) signalling. However, TRIA's role in relation to ABA and stomatal opening is unclear. Therefore, the objective of this study was to evaluate the effects of TRIA and ABA and their combinations on different variables related to stomatal regulation in Solanum lycopersicum, which is subjected to drought stress, and on the leaf epidermis. The negative effects of stress and responses triggered by ABA were reversed in plants treated with TRIA. TRIA increased stomatal conductance and photosynthetic activity in the early hours, and it was determined that TRIA produced larger stomata than did the other treatments. Moreover, the chloroplasts of plants treated with TRIA were significantly smaller and more numerous than those of the control, which could improve CO2 diffusion efficiency and may be related to the regulation of stomatal opening and photosynthesis. Finally, the abaxial epidermis tests reaffirmed the inhibitory effects of TRIA on ABA on stomatal opening. These results confirm the important role of TRIA in regulating various processes in plants and processes triggered by ABA, such as those related to stomatal regulation. [ABSTRACT FROM AUTHOR]

Yellow sticky traps (YSTs) are common tools for monitoring the greenhouse whitefly (GWF), Trialeurodes vaporariorum Westwood (Hemiptera: Aleyrodidae), which can cause significant yield reduction in different greenhouse crops such as cucumber and tomato. In recent years, sticky traps equipped with green light-emitting diodes (LEDs) have also been (successfully) tested for catching GWFs. However, no study has observed GWF population dynamics at low population densities using such LED traps for early pest detection in crop stands. Therefore, a greenhouse experiment was conducted aiming to investigate the correlation between GWF populations on tomato crops (Solanum lycopersicum L. (Solanaceae)) and the numbers caught on yellow sticky traps and green LED traps, respectively. A small number of whiteflies was released into two pest-free greenhouse cabins, and populations on plants and traps were monitored for the duration of two months. The results show that the GWFs caught on LED traps correlate significantly positive with the population density on the tomato crops. Such a correlation was not found for standard YSTs. Moreover, the results indicate the possibility of early pest detection using LED traps. The findings are discussed in the context of the whiteflies' ecology and population dynamics in greenhouses. [ABSTRACT FROM AUTHOR]

Water limits may have a disastrous impact on agricultural productivity, and the current climate change scenario presents additional problems for crops that rely on regular rainfall. Reactive oxygen species, such as hydrogen peroxide (H2O2), are a recognized stress-sensing mechanism in plants, and may be investigated as an approach for reducing stress impact via systemic acquired acclimation. Here, we looked at how H2O2 foliar application impacts tomato plants' photosynthetic activity, antioxidant system, sugar chemical profile, and osmotic adjustment during drought and recovery. The experiment was in randomized blocks, 3 × 2 factorial design, with no, one, or two foliar application of 1 mM H2O2, on plants that were either continually watered or subjected to drought. The plants were tested both during the drought period and after they had resumed irrigation (recovered). Leaf water potential, chlorophyll a fluorescence, gas exchange, lipid peroxidation, H2O2 concentrations, phenols, proline, antioxidant enzyme activity, and sugar chemical profile were all measured. Our findings showed that H2O2 application generated metabolic alterations in tomato plants independent of water status, and that two applications in drought plants resulted in a 30% decrease in oxidative stress during drought and faster recovery following irrigation return, with greater production of defence-related molecules such as the APX enzyme, phenols, arabinose, and mannose. Continually watered plants also benefited from H2O2 application, which increased carbon assimilation by 35%. [ABSTRACT FROM AUTHOR]

Abstract Background The polyphagous notorious pest, black cutworm, Agrotis ipsilon (Hufnagel) (Lepidoptera: Noctuidae), cause significant production losses due to its distinctive feeding and hiding behavior, making it particularly challenging to control it with conventional methods. Therefore, sustainable agriculture demands more effective and environmentally safe pest control solutions. This study aimed to investigate the toxicity of two insecticide alternatives, the entomopathogenic fungus (EPF) Beauveria bassiana and Solanum lycopersicum extract (Tomato plant crude extract, TPCE), using two bioassay methods: the poisoned bait method and the leaf dipping method. In addition, the impact of these biological tools on larval development and protein profiles was evaluated. Results The bait application of both tested materials exhibited higher toxicity than the leaf dipping method, as indicated by the toxicity index. The LC50 values for B. bassiana were 1.6 × 10⁸ and 1.8 × 10⁶ conidia ml−1 using the leaf dipping method and poisoned baits method, respectively. For TPCE, the LC50 values were 4.35 and 1.51 mg ml−1 for the same methods, respectively. In addition, sublethal concentrations of both materials altered the larval and pupal durations. B. bassiana significantly reduced the concentration of larval hemolymph protein. A maximum of 12 protein bands in the control sample, with molecular weights (Mw) ranging between 35 and 120 kDa, were detected by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE). In B. bassiana-treated larvae, ten bands were detected with Mw ranging from 35 to 120 kDa. At least seven bands were detected in TPCE-treated larvae, with Mw ranging from 35 to 97 kDa. Conclusions The findings of this study can be integrated into management programs for A. ipsilon. In addition, the availability of B. bassiana and TPCE in Egypt and their cost-effectiveness as insecticide alternatives support their use in the management programs of this critical pest. These methods are particularly effective when applied in bait form. Graphical Abstract

California is the primary US producer of processing tomatoes. After decades-long excellent protection against the common tropical Meloidogyne spp. M. incognita, M. javanica, and M. arenaria (root-knot nematode: RKN) by Mi-resistant tomato cultivars, resistance-breaking RKN populations are spreading throughout the San Joaquin Valley. For some time, nematicidal crop management tools have diminished under CA State regulatory pressure. In recent years, new non-volatile compounds have been developed with novel modes of action. In this project with susceptible processing tomato grown on an M. incognita-infested site, the efficacy of three fluorinated nematicides was evaluated in 10 field trials from 2011 to 2021. Seven trials included fluensulfone, six included fluazaindolizine, and five included fluopyram. On average, tomato root-galling (0 – 10 scale) at harvest was reduced by 3.2, 2.3, and 2.5 by fluazaindolizine, fluensulfone, and fluopyram, respectively, compared to the untreated control. These reductions in root-galling corresponded with estimated yield gains of approximately 21%, 14%, and 15%, respectively, over the untreated control. The reproduction of RKN during the tomato crop was not affected by the nematicides. The tested compounds have a very low acute mammalian toxicity and are more target-specific than previous generations of nematicides. However, there is considerable concern about the persistence of synthetic per- and polyfluoroalkyl substances (PFAS) in the environment, including pharmaceuticals and pesticides containing fluorine with the C-F3 functional group.

Abstract Background Dirigent (DIR) genes play a key role in the development of organic products in plants. They confer conformational influence on processes that lack stereoselectivity and regioselectivity through processes that are mostly understood. They are required to produce lignans, which are a unique and widely distributed family of plant secondary metabolites with intriguing pharmacological characteristics and potential role in plant development. DIR genes are implicated in the process of lignification and protect plants from environmental stresses, including biotic and abiotic stresses. Nevertheless, no research has been performed on the DIR gene family in Solanum lycopersicum. This study provides detailed information on the DIR gene family in S. lycopersicum. Methods and results The conserved domain analysis, phylogenetic analysis, evolutionary adaptation, cis-acting elements, proteomic analysis, signal peptide detection, transmembrane potential analysis, sequence identity and similarity analysis, gene assembly, genomic localization, duplication of gene analysis, and evolutionary linkage of 31 potential DIR genes were studied. All these analyses provide a deep understanding of DIR genes in the S. lycopersicum genome that will provide a useful reference for further functional analysis of the DIR genes in S. lycopersicum. Conclusion This research provides an in-depth and comprehensive explanation of the detailed process and structural characterization of DIR genes in the genome of S. lycopersicum, laying the groundwork for future plant genetic engineering and crop development exploration. This work will provide valuable information for identifying DIR genes in higher plants and support future research on the DIR gene family.

Abstract Sustainable plant production in soil polluted with heavy metals requires that novel strategies are developed for the benefit of humans and other living things. Cadmium (Cd) is a common heavy metal pollutant for plants, and there is limited information on the use of exogenous bio-regulators to reduce the accumulation and toxic effects of Cd pollution in plants. Choline is an endogenous quertarnary amine that is known to improve stress tolerance in plants, while its mechanism of action in certain conditions is yet to be determined. This study investigated the effects of foliar choline supplementation (10 mM) on Solanum lycopersicum seedlings exposed to Cd application (50 mg/L in soil). The seedlings were randomized to five groups: Control (E1), Cd stress (E2), Choline supplementation after Cd stress (E3), Choline (E4), and Choline supplementation before Cd stress (E5). Following the applications, the Cd content, growth and development parameters (chlorophyll content, fresh and dry weight), oxidative stress parameters (H2O2 and MDA contents), as well as antioxidative defense system (SOD, GSH, AsA, and TPC contents) were analyzed. Choline supplementation after Cd stress reduced the enhanced Cd content in roots by 38% but did not alter it in leaves (p > 0.05) compared to the Cd group. Choline supplementation before Cd stress decreased Cd content both in roots by 87.5% and in leaves by 50%. Choline supplementation after and before Cd stress increased fresh and dry weights in both roots and leaves. While the Cd group (E2) increased the H2O2 level and SOD activity, no remarkable change was observed in H2O2 levels in all choline supplementations (E3, E4, E5). Therefore, lipid peroxidation (MDA) was not observed in choline supplementation before Cd stress (E5), however, when the choline was applied after Cd stress (E3) MDA content was reduced by 40% compared with the Cd stress group (E2). Choline supplementations after and before Cd stress (E3, E5) increased AsA content by 30%, while the Cd group (E2) decreased it by 60% compared with the control group (E1). Choline supplementations before Cd stress (E5) increased TPC by 33%, while the Cd group (E2) decreased it by 18%, moreover, when choline was applied after Cd stress (E3), no change was observed compared to the control group. These data suggest that choline prevents inhibition of plant growth due to Cd toxicity by reducing Cd uptake. The results provided in the present study are likely to enhance the quality and efficiency of crop production in heavy metal-polluted areas.

Abstract Background To counteract soil degradation, it is important to convert conventional agricultural practices to environmentally sustainable management practices. To this end, the application of biostimulants could be considered a good strategy. Compost, produced by the composting of biodegradable organic compounds, is a source of natural biostimulants, such as humic acids, which are naturally occurring organic compounds that arise from the decomposition and transformation of organic residues, and compost tea, a compost-derived liquid formulated produced by compost water-phase extraction. This study aimed to determine the molecular responses of the roots of tomato plants (cv. Crovarese) grown under hydroponic conditions and subjected to biostimulation with humic substances (HSs) and filtered sterile compost tea (SCT). Results The 13C CPMAS NMR of humic acids (HA) and SCT revealed strong O-alkyl-C signals, indicating a high content of polysaccharides.Thermochemolysis identified over 100 molecules, predominantly from lignin, fatty acids, and biopolymers. RNA-Seq analysis of tomato roots treated with HA or SCT revealed differentially expressed genes (DEGs) with distinct patterns of transcriptional reprogramming. Notably, HA treatment affected carbohydrate metabolism and secondary metabolism, particularly phenylpropanoids and flavonoids, while SCT had a broader impact on hormone and redox metabolism. Both biostimulants induced significant gene expression changes within 24 h, including a reduction in cell wall degradation activity and an increase in the expression of hemicellulose synthesis genes, suggesting that the treatments prompted proactive cell wall development. Conclusions The results demonstrate that HS and SCT can mitigate stress by activating specific molecular mechanisms and modifying root metabolic pathways, particularly those involved in cell wall synthesis. However, gene regulation in response to these treatments is complex and influenced by various factors. These findings highlight the biostimulatory effects of HS and SCT, suggesting their potential application in crop biofertilization and the development of innovative breeding strategies to maximize the benefits of humic substances for crops. Further research is needed to fully elucidate these mechanisms across various contexts and plant species.

The use of microbial seed priming may be a promising tool to improve the first stages of seed germination of several herbaceous species. In tomatoes (Solanum lycopersicum L.), enhanced germination and vigor, and biotic and abiotic stress control, with a reduction in chemicals, have been reported. In this study, seeds from two Italian tomato varieties (Canestrino di Lucca and Pisanello) were primed with seven different strains of plant growth-promoting rhizobacteria (PGPB) belonging to Azospirillum baldaniorum, A. brasilense, Methylobacterium symbioticum, Bacillus amyloliquefaciens, B. licheniformis, and B. subtilis. They were selected for their ability to produce auxin. The germination test was carried out on treated seeds and the germination percentage was calculated. The obtained seedlings were transplanted and kept in greenhouse conditions. After 60 d, fresh and dry weight, root number, and length of plantlets were recorded. A general and significant improvement in the growth parameters was observed in the treated plants. All microbial strains proved to be indolacetic acid (IAA) producers using the Salkowsky method. A positive relationship between root number and length, and amount of IAA was found. The overall results suggest that the microbial priming of tomato seed could be useful for advancing organic farming, sustainable agriculture, and environmental protection.

Meloidogyne spp. are the most devastating plant‐parasitic nematodes affecting tomato worldwide. Although resistant cultivars and rootstocks are used, selection for virulence occurs in the pathogen. Consequently, using other resistance sources, such as Solanumtorvum, could improve resistance durability. Several experiments in microplots and plastic greenhouses were carried out to determine the potential use of S. torvum as a tomato rootstock to protect against M. incognita and M. javanica. In microplots, the relationship between nematode density at transplanting (Pi) and multiplication rate did not differ between Meloidogyne species in either ungrafted or grafted tomato. However, maximum multiplication rate and maximum density on grafted tomato were 1.27% and 2.93% those on ungrafted, respectively. The grafted tomato plants yielded between 2.9 and 7.5 more times than the ungrafted plants at Pi ≥ 100 eggs + J2s per 100 cm3 of soil, but no differences were observed in plastic greenhouse where a large amount of scion‐rooting occurred. In microplots, the quality of the tomato fruits of ungrafted and grafted plants was affected by the Pi. In parallel, some pot experiments were conducted on S. torvum and susceptible eggplant to determine the putative selection for nematode virulence to S. torvum and the nematode fitness cost. These showed that the nematode subpopulations infected and reproduced less on S. torvum than on eggplant. However, the female fertility was only reduced after development of three or four subpopulations on S. torvum. Finally, a histopathological study showed that nematode infection and development in S. torvum was delayed compared to eggplant. [ABSTRACT FROM AUTHOR]

The main objective of this study was to estimate and compare substitution matrixes of nucleotide frequencies for Tomato leaf curl New Delhi virus (ToLCNDV) with recently identified begomoviral isolates from two medicinal false daisy (Eclipta prostrata) and tomato (Solanum lycopersicum) plants. The ToLCNDV has become a significant limitation to vegetables production in many countries. A polymerase chain reaction was conducted to conserve the existence of begomoviral infection. The acquired amplicon was amplified using primers appropriate to the sequence in order to retrieve the full genome. The sequence analysis has confirmed the presence of ToLCNDV in symptomatic plants. The complete genome sequence having a 2.6–2.7 kb entire genome of ToLCNDV was obtained. An investigation of the phylogenetic and evolutionary history has verified the connection between this virus and other closely related viruses. The available nucleotide frequencies of codon regions (A, T/U, C, G) with newly isolates revealed 20–28% substitution matrixes. There was a minimal difference of nucleotide frequencies' with already submitted database of this virus. Substitution matrixes, which quantify the probability of nucleotide substitutions evolving over a period of time, offer valuable information about mutation patterns and the forces driving evolution. This comparative analysis enhanced the comprehension of the genetic diversity of ToLCNDV and its possible consequences on medicinal plants. It also assisted in the formulation of efficient control measures and the preservation of begomoviruses in medicinal plant biodiversity. The information presented here is highly valuable for understanding the ToLCNDV biology and epidemiology, and it would also assist in disease management in the future. [ABSTRACT FROM AUTHOR]

Soil salinity is a serious concern for tomato culture, affecting both yield and quality parameters. Although some genes involved in tomato salt tolerance have been identified, their genetic diversity has been rarely studied. In the present study, we assessed salt tolerance‐related traits at juvenile and adult stages in a large core collection and identified salt tolerance quantitative trait loci (QTLs) by genome‐wide association study (GWAS). The results suggested that a major QTL is involved in leaf sodium accumulation at both physiological stages. We were able to identify the underlying candidate gene, coding for a well‐known sodium transporter, called SlHKT1.2. We showed that an eQTL for the expression of this gene in roots colocalized with the above ground sodium content QTL. A polymorphism putatively responsible for its variation was identified in the gene promoter. Finally, to extend the applicability of these results, we carried out the same analysis on a test‐cross panel composed of the core collection crossed with a distant line. The results indicated that the identified QTL retained its functional impact even in a hybrid genetic context: this paves the way for its use in breeding programs aimed at improving salinity tolerance in tomato cultivars. Summary Statement: The genetic diversity of sodium accumulation in tomato shoot under salt stress is associated with an expression QTL of SlHKT1.2. This gene, already identified as involved in tomato salinity tolerance, has been differentially selected during domestication and is of interest for the development of salinity‐tolerant varieties. [ABSTRACT FROM AUTHOR]

Organic agriculture comprises farming practices that discard synthetic pesticides and fertilizers. Tomato production demands huge amounts of fertilizers and pesticides. Improving efficiency of the inputs allowed for organic tomato production is a challenge to upgrade yields. Thereby, we studied the effects of the inoculation of the arbuscular mycorrhizal fungus (AMF) Rhizophagus clarus, supplying rock thermophosphate and bioactivator, alone or associated, on tomato development and yield. The experiment was achieved in a greenhouse using undetermined tomato cv. BRS-Nagai sown in polystyrene trays and afterwards transplanted to pots. Treatments included R. clarus; thermophosphate (TH) (130 g/pot); bioactivator (PenergeticK® + Penergetic®) (BI); R. clarus + TH; R. clarus + BI; R. clarus + TH+ BI and TH + BI and control (CO). From the flowering onset, plant height, height of insertion of first truss, trusses space, length, and also the diameter and fresh weight of ripe fruits of the three first trusses were assessed. AMF colonization in the roots and macronutrients in leaves and petioles were also measured. Trusses spacing variable was affected by mycorrhiza and thermophosphate. R. clarus inoculation incremented 10 and 31.85% of fresh mass of ripe fruits and mass of ripe fruits per plant, respectively. Soluble solids contents in fruits and N, P and K in the leaves and petioles were similar among treatments. AMF colonization decreased on thermophosphate fertilized plants and increased in bioactivator treatment. Results showed that root inoculation with R. clarus promoted better plant development and yield and may be used as biological inoculant mostly on organic tomato production. [ABSTRACT FROM AUTHOR]

Plant pathologies significantly jeopardise global food security, necessitating the development of prompt and precise diagnostic methods. This study employs advanced deep learning techniques to evaluate the performance of nine convolutional neural networks (CNNs) in identifying a spectrum of phytosanitary issues affecting the foliage of Solanum lycopersicum (tomato). Ten thousand RGB images of leaf tissue were subsampled in training (64%), validation (16%), and test (20%) sets to rank the most suitable CNNs in expediting the diagnosis of plant disease. The study assessed the performance of eight well-known networks under identical hyperparameter conditions. Additionally, it introduced the GamaNNet architecture, a custom-designed model optimised for superior performance on this specific type of dataset. The investigational results were most promising for the innovative GamaNNet and ResNet-152, which both exhibited a 91% accuracy rate, as evidenced by their confusion matrices, ROC curves, and AUC metrics. In comparison, LeNet-5 and ResNet-50 demonstrated lower assertiveness, attaining accuracies of 74% and 69%, respectively. GoogLeNet and Inception-v3 emerged as the frontrunners, displaying diagnostic preeminence, achieving an average F1-score of 97%. Identifying such pathologies as Early Blight, Late Blight, Corynespora Leaf Spot, and Septoria Leaf Spot posed the most significant challenge for this class of problem.

Abstract This study employed two prevalent plastic products - straws and microfiber as microplastics (MPs) to elucidate their largely unexplored effects on soil’s properties and the growth of the tomato plant (Solanum lycopersicum L.). For this experiment, a completely randomized design (CRD) was adopted where, straw - polypropylene (PP), microfiber - polyester (PES) + polyamide (PA), and their combinations (PP + PES + PA) were mixed with soil using different concentrations – 0% (control), 0.4%, 1%, and 2% (treatments) and kept for 45 days at room temperature. The findings demonstrated that incorporating 2% mixed MPs in soil significantly decreased bulk density and electrical conductivity 7.29% and 67.3%, respectively, while soil pH increased 17.84% in cultures containing 1% microfiber. Maximum water holding capacity (MWHC), soil organic carbon (SOC), and soil organic matter (SOM) showed varied responses based on MPs type and concentration. Specifically, MWHC increased 16.4% with 2% microfiber but declined 13.3% with 0.4% straw. The highest decreased (30.65%) in SOC and SOM were evident in cultures with 1% microfiber whereas increased 9.68% and 8.33% in cultures with 0.4% straw. In terms of the growth traits of S. lycopersicum, substantial reductions in plant height (56.37%), leaf number (54.37%), and girth diameter (56.43%) were observed in 2% straw containing cultures. Although no plant mortality was noted, the most pronounced reductions in leaf area (62.44%) and total plant biomass (68.16%) occurred in 2% microfiber cultures. Therefore, the ramifications of these findings may contribute to a deeper comprehension of the mechanisms and effects of MPs on soil properties and above-ground plant growth.

Abstract Climate change is one of the biggest challenges to the world at present. Tomato is also suffered from devastating yield loss due to climate change. The domesticated tomato (Solanum lycopersicum) is presumed to be originated from the wild tomato (S. pimpinellifolium). In this study, we compared the climate data of S. pimpinellifollium with the domesticated tomato, predicted the suitable regions of S. pimpinellifollium in China using MaxEnt model and assessed their tolerance to drought stress. We found that the predicted suitable regions of wild tomato are highly consistent with the current cultivated regions of domesticated tomato, suggesting that the habitat demand of domesticated tomato descended largely from its ancestor, hence the habitat information of wild tomato could provide a reference for tomato cultivation. We further predicted suitable regions of wild tomato in the future in China. Finally, we found that while average drought tolerance between wild and domesticated tomato accessions shows no difference, tolerance levels among wild tomato accessions exhibit higher variation, which could be used for future breeding to improve drought resistance. To summarize, our study shows that suitable regions of wild tomato provide insights into domesticated tomato cultivation in China.

Among the many biotic factors with adverse effects on Solanum lycopersicum (tomato), diseases caused by fungi, viruses and nematodes are notable. Since the genome of S. lycopersicum became available, efforts have continued to identify the genes and proteins associated with the plant defence activity. One such gene family belongs to TIR-NBS-LRR (TNL), a subfamily of larger NBS-LRR genes. In total, 27 full-length TNLs were identified via genome wide analysis. Four pairs of segmental duplication events were observed involving different pairs of chromosomes, except the pairing of Solyc02g082050-Solyc02g032650, which were both present on chromosome 2. More than twenty nine percent (29.63%) of the genes were localised on chromosome 1 alone. Hormone-mediated biotic stress-responsive cis-regulatory elements were detected for methyl-jasmonate, salicylic acid (TCA motif) and ethylene (ERE motif). Differential gene expression was observed for many genes under different plant tissues and biotic stresses. The upregulation of many genes including SlBS4 was observed against Alternaria solani attacks in the disease tolerant varieties. Altogether, the results suggested that TNLs play a significant role in plant defence under biotic stress.