29 results on '"Snow JT"'
Search Results
2. Cutaneous metastases of non-cutaneous neuroendocrine neoplasms: A histopathologic review of 15 cases.
- Author
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Hobbs MM, Snow JT, Shachner TR, and Sokumbi O
- Subjects
- Biomarkers, Tumor, Female, Humans, Immunohistochemistry, Male, Middle Aged, Carcinoma, Merkel Cell pathology, Carcinoma, Neuroendocrine, Carcinoma, Small Cell pathology, Lung Neoplasms pathology, Skin Neoplasms pathology
- Abstract
Background: Cutaneous metastases from non-cutaneous neuroendocrine neoplasms are rare; however, distinction from primary neuroendocrine carcinomas of the skin (Merkel cell carcinoma) guides clinical management., Methods: We performed a retrospective review from September 1, 2010 to September 30, 2020 of the histopathologic, immunohistochemical, and clinical characteristics of metastatic neuroendocrine neoplasms to the skin from non-cutaneous primaries., Results: Fourteen patients were identified for the study (nine males and five females; mean age of 59.5 years). Fifteen skin specimens from 14 patients were available for review. At the time of skin biopsy, a known non-cutaneous neuroendocrine neoplasm was present in 50% of patients. Primary sites of neuroendocrine carcinoma included lung (n = 5), terminal ileum (n = 2), and one each from prostate, breast, rectum, uterus, esophagus, and sinus, with one unknown (suspected bladder malignancy). Eleven of fourteen patients are dead of disease; one was lost to follow-up. All 15 specimens showed subcutaneous/deep dermal involvement with six involving the papillary dermis and one involving the epidermis. The tumors ranged from well to poorly differentiated. Two of fifteen specimens showed focal CK20 positivity (one metastatic uterine small cell carcinoma and one metastatic ileal carcinoid). TTF-1 was performed in 13 specimens and was positive in six, of which two were of non-pulmonary origin., Conclusions: While immunohistochemical stains, in particular CK20, CK7, and TTF-1, are integral in the workup of confirming the origin of neuroendocrine tumors found in the skin, results vary and are often non-specific for a single primary site. Therefore, complete radiologic imaging as well as clinical correlation should be recommended to further aid in the identification of a non-cutaneous primary neoplasm., (© 2022 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)
- Published
- 2022
- Full Text
- View/download PDF
3. Molecular analysis of NUT-positive poromas and porocarcinomas identifies novel break points of YAP1::NUTM1 fusions.
- Author
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Snow JT, Georgantzoglou N, Green DC, Parra O, LeBlanc RE, Yan S, Sriharan A, Momtahen S, Winnick KN, Dimonitsas E, Stavrianos S, Lakiotaki E, Korkolopoulou P, Revelos K, Guo R, and Linos K
- Subjects
- Humans, Nuclear Proteins genetics, Oncogene Proteins, Fusion genetics, RNA, Transcription Factors genetics, YAP-Signaling Proteins, Eccrine Porocarcinoma, Poroma, Sweat Gland Neoplasms genetics
- Abstract
Background: Poromas, and their malignant counterparts, porocarcinomas, harbor recurrent translocations involving YAP1-MAML2, YAP1-NUTM1, and infrequently WWTR1-NUTM1; YAP1-NUTM1 being the most common in porocarcinomas. NUT immunohistochemistry (IHC) can be used to identify NUTM1-translocated tumors. This study sought to investigate potential novel NUTM1-fusion partners among NUT IHC-positive poromas and porocarcinomas., Methods: Thirteen NUT IHC-positive poroid tumors (four poromas and nine porocarcinomas) were identified within a multi-institutional international cohort. Next-generation sequencing (NGS) assessed for NUTM1 fusion partners., Results: NGS detected a NUTM1 fusion in 12 of 13 cases: YAP1-NUTM1 (11/12 cases) and WWTR1-NUTM1 (1/12 cases). Two of the cases (2/12) with NUTM1 fusion were not called by the NGS algorithm but had at least one read-spanning YAP1-NUTM1 break point upon manual review. A NUTM1 fusion was not identified in one case; however, the sample had low RNA quality. The following fusion events were identified: YAP1 exon 4::NUTM1 exon 3 in six cases, YAP1 exon 6::NUTM1 exon 2 in one case, YAP1 exon 3::NUTM1 exon 3 in three cases, WWTR1 exon 3::NUTM1 exon 3 in one case, and YAP1 exon 8::NUTM1 exon 3 fusion in one case., Conclusion: While no novel NUTM1 fusion partners were identified within our cohort, 12 of 13 cases had discoverable NUTM1 fusions; YAP1-NUTM1 fusion was detected in 11 cases (92%) and WWTR1-NUTM1 in 1 case (8%). These data corroborate findings from other recent investigations and further substantiate the utility of NUT IHC in diagnosing a subset of poroid neoplasms. In addition, two of our cases harbored fusions of YAP1 exon 6 to NUTM1 exon 3 and YAP1 exon 8 to NUTM1 exon 2, which have not been reported before in poroid neoplasms and indicate novel break points of YAP1., (© 2022 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)
- Published
- 2022
- Full Text
- View/download PDF
4. Epithelioid osteoblastoma with secondary aneurysmal bone cyst and FOS gene rearrangement.
- Author
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Snow JT, Edgar MA, Halphen CR, Stanborough RO, and Garner HW
- Subjects
- Gene Rearrangement, Humans, Bone Cysts, Aneurysmal diagnostic imaging, Bone Cysts, Aneurysmal genetics, Bone Cysts, Aneurysmal surgery, Bone Neoplasms complications, Bone Neoplasms diagnostic imaging, Bone Neoplasms genetics, Osteoblastoma diagnostic imaging, Osteoblastoma genetics, Osteoblastoma surgery, Osteoma, Osteoid complications, Osteoma, Osteoid diagnostic imaging, Osteoma, Osteoid genetics
- Abstract
Epithelioid osteoblastoma, sometimes equated with aggressive osteoblastoma, is a variant of osteoblastoma that typically demonstrates more worrisome imaging and pathological features compared to conventional osteoblastoma. These more aggressive features can overlap with those seen in osteosarcoma, creating a diagnostic challenge for radiologists and pathologists. Recent identification of FOS and FOSB gene rearrangements in osteoid osteoma and osteoblastoma has allowed for greater diagnostic confidence following biopsy, but careful radiological-pathological correlation remains a key component for guiding appropriate management. Although the imaging features of conventional osteoblastoma have been previously described, there are limited examples in the literature of the imaging appearance of epithelioid osteoblastoma, and none with secondary aneurysmal bone cyst. In this case report, we detail the clinical, imaging, and histological characteristics of a proximal femoral epithelioid osteoblastoma which was pathologically confirmed by FOS and FOSB genetic testing. The initial imaging impression favored a malignancy, but when the biopsy results were correlated in a multidisciplinary fashion with the imaging, epithelioid osteoblastoma became the leading diagnosis which was subsequently genetically confirmed. This case emphasizes the value of multidisciplinary radiology-pathology correlation in routine practice., (© 2021. ISS.)
- Published
- 2022
- Full Text
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5. Proteomic response of the marine ammonia-oxidising archaeon Nitrosopumilus maritimus to iron limitation reveals strategies to compensate for nutrient scarcity.
- Author
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Shafiee RT, Snow JT, Hester S, Zhang Q, and Rickaby REM
- Subjects
- Iron metabolism, Nutrients, Oxidation-Reduction, Proteomics, Ammonia metabolism, Archaea metabolism
- Abstract
Dissolved iron (Fe) is vanishingly low in the oceans, with ecological success conferred to microorganisms that can restructure their biochemistry to maintain high growth rates during Fe scarcity. Chemolithoautotrophic ammonia-oxidising archaea (AOA) are highly abundant in the oceans, constituting ~30% of cells below the photic zone. Here we examine the proteomic response of the AOA isolate Nitrosopumilus maritimus to growth-limiting Fe concentrations. Under Fe limitation, we observed a significant reduction in the intensity of Fe-dense ferredoxins associated with respiratory complex I whilst complex III and IV proteins with more central roles in the electron transport chain remain unchanged. We concomitantly observed an increase in the intensity of Fe-free functional alternatives such as flavodoxin and plastocyanin, thioredoxin and alkyl hydroperoxide which are known to mediate electron transport and reactive oxygen species detoxification, respectively. Under Fe limitation, we found a marked increase in the intensity of the ABC phosphonate transport system (Phn), highlighting an intriguing link between Fe and P cycling in N. maritimus. We hypothesise that an elevated uptake of exogenous phosphonates under Fe limitation may either supplement N. maritimus' endogenous methylphosphonate biosynthesis pathway - which requires Fe - or enhance the production of phosphonate-containing exopolysaccharides known to efficiently bind environmental Fe., (© 2021 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.)
- Published
- 2022
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6. p16 immunostaining in fine-needle aspirations of the head and neck: determining the optimal positivity threshold in HPV-related squamous cell cancer.
- Author
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Wang Q, Zhou F, Snow JT, Simsir A, Hernandez O, Levine P, Szeto O, Sun W, Givi B, and Brandler TC
- Subjects
- Biomarkers, Tumor, Biopsy, Fine-Needle, Head and Neck Neoplasms metabolism, Head and Neck Neoplasms pathology, Head and Neck Neoplasms virology, Humans, Immunohistochemistry, Papillomavirus Infections metabolism, Papillomavirus Infections virology, Sensitivity and Specificity, Squamous Cell Carcinoma of Head and Neck metabolism, Squamous Cell Carcinoma of Head and Neck pathology, Squamous Cell Carcinoma of Head and Neck virology, Cyclin-Dependent Kinase Inhibitor p16 metabolism, Head and Neck Neoplasms diagnosis, Papillomavirus Infections pathology, Squamous Cell Carcinoma of Head and Neck diagnosis
- Abstract
Introduction: There is no consensus for interpretation of p16 immunohistochemistry (IHC) in cytology preparations. Our study aims to assess p16 IHC staining in formalin-fixed cytology cell blocks (CBs) from head and neck squamous cell carcinoma (HNSCC) fine-needle aspiration (FNA) specimens in comparison with surgical pathology p16 staining and to determine the reproducibility of p16 IHC scoring in CBs., Methods: A total of 40 FNAs from 2014 to 2019 of HNSCC with p16 IHC were obtained. CB p16 staining was scored independently by 5 cytopathologists as interval percentages of tumor cell positivity. Receiver operating characteristic (ROC) curves were examined to determine optimal cutoffs for each pathologist based on sensitivity and specificity values. Gwet's coefficient (AC
1 ) was calculated to assess inter-rater reliability., Results: Greater than 10% was the lowest threshold to reach 100% specificity with high sensitivity (55%-84%) in all 5 raters. Rater performances were similar, with areas under the curve (AUCs) ranging from 0.89 to 0.95. Using the >10% threshold, Gwet's AC1 = 0.72 (95% CI: 0.56-0.89). Diagnostic performance improved further when low-cellularity cases were excluded, with AUC ranging from 0.94 to 0.99 and Gwet's AC1 = 0.79 (95% CI: 0.61-0.98)., Conclusion: p16 IHC performed on cytology CBs can serve as a surrogate marker for the detection of HPV with high sensitivity and specificity levels. Using a threshold lower than that recommended for surgical pathology for the interpretation of p16 positivity may be appropriate for FNA cytology CB preparations. All cytopathologists in our study displayed reproducible high sensitivity and specificity values at the >10% threshold., (Copyright © 2021 American Society of Cytopathology. Published by Elsevier Inc. All rights reserved.)- Published
- 2021
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7. The influence of elevated SiO 2 (aq) on intracellular silica uptake and microbial metabolism.
- Author
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Tostevin R, Snow JT, Zhang Q, Tosca NJ, and Rickaby REM
- Subjects
- Eukaryota, Seawater, Diatoms, Silicon Dioxide
- Abstract
Microbes are known to accumulate intracellular SiO
2 (aq) up to 100s of mmol/l from modern seawater (SiO2 (aq) <100 µmol/l), despite having no known nutrient requirement for Si. Before the evolution of siliceous skeletons, marine silica concentrations were likely an order of magnitude higher than the modern ocean, raising the possibility that intracellular SiO2 (aq) accumulation interfered with normal cellular function in non-silicifying algae. Yet, because few culturing studies have isolated the effects of SiO2 (aq) at high concentration, the potential impact of elevated marine silica on early microbial evolution is unknown. Here, we test the influence of elevated SiO2 (aq) on eukaryotic algae, as well as a prokaryote species. Our results demonstrate that under SiO2 (aq) concentrations relevant to ancient seawater, intracellular Si accumulates to concentrations comparable to those found in siliceous algae such as diatoms. In addition, all eukaryotic algae showed a statistically significant response to the high-Si treatment, including reduced average cell sizes and/or a reduction in the maximum growth rate. In contrast, there was no consistent response to the high-Si treatment by the prokaryote species. Our results highlight the possibility that elevated marine SiO2 (aq) may have been an environmental stressor during early eukaryotic evolution., (© 2021 John Wiley & Sons Ltd.)- Published
- 2021
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8. Marine ammonia-oxidising archaea and bacteria occupy distinct iron and copper niches.
- Author
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Shafiee RT, Diver PJ, Snow JT, Zhang Q, and Rickaby REM
- Abstract
Ammonia oxidation by archaea and bacteria (AOA and AOB), is the first step of nitrification in the oceans. As AOA have an ammonium affinity 200-fold higher than AOB isolates, the chemical niche allowing AOB to persist in the oligotrophic ocean remains unclear. Here we show that marine isolates, Nitrosopumilus maritimus strain SCM1 (AOA) and Nitrosococcus oceani strain C-107 (AOB) have contrasting physiologies in response to the trace metals iron (Fe) and copper (Cu), holding potential implications for their niche separation in the oceans. A greater affinity for unchelated Fe may allow AOB to inhabit shallower, euphotic waters where ammonium supply is high, but competition for Fe is rife. In contrast to AOB, AOA isolates have a greater affinity and toxicity threshold for unchelated Cu providing additional explanation to the greater success of AOA in the marine environment where Cu availability can be highly variable. Using comparative genomics, we predict that the proteomic and metal transport basis giving rise to contrasting physiologies in isolates is widespread across phylogenetically diverse marine AOA and AOB that are not yet available in pure culture. Our results develop the testable hypothesis that ammonia oxidation may be limited by Cu in large tracts of the open ocean and suggest a relatively earlier emergence of AOB than AOA when considered in the context of evolving trace metal availabilities over geologic time., (© 2021. The Author(s).)
- Published
- 2021
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9. Antagonistic co-limitation through ion promiscuity - On the metal sensitivity of Thalassiosira oceanica under phosphorus stress.
- Author
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Snow JT, Holdship P, and Rickaby REM
- Subjects
- Arsenic toxicity, Oceans and Seas, Diatoms physiology, Metals toxicity, Phosphorus toxicity, Water Pollutants, Chemical toxicity
- Abstract
Nutrient limitation of primary producers is a fundamental principle in biogeochemical oceanography and has been used with great success in prescribing understanding to patterns of marine primary productivity. In recent years the paradigm of nutrient limitation has expanded from single nutrient limitation towards concepts of co-limitation by multiple resources. Interactive effects between multiple limiting resources are now thought commonplace in marine microbial communities. Here we investigate the response exhibited by phosphate-limited Thalassiosira oceanica to elevated concentrations of the phosphate analogs vanadate, arsenate and molybdate. Enrichments in external arsenate and vanadate to phosphate-limited cultures act to suppress growth rates entirely, an effect not seen in phosphate replete conditions. Retardation of growth rates is attributed to mistaken uptake through ion promiscuity as evidenced by observations of significant intracellular accumulation of both arsenic and vanadium under phosphate limited conditions. We describe this novel co-limitation scenario as dependent antagonistic co-limitation (DAC), and suggest that this phenomenon of non-deliberate intracellular accumulation could be used as both a proxy of phosphate stress in the modern ocean and a possible marker of phosphate depletion limiting the duration of oceanic anoxic events., (Copyright © 2019. Published by Elsevier B.V.)
- Published
- 2020
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10. Identification of a Biomarker Panel for Early Detection of Lung Cancer Patients.
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Geary B, Walker MJ, Snow JT, Lee DCH, Pernemalm M, Maleki-Dizaji S, Azadbakht N, Apostolidou S, Barnes J, Krysiak P, Shah R, Booton R, Dive C, Crosbie PA, and Whetton AD
- Subjects
- Aged, Female, Humans, Lung Neoplasms diagnosis, Lung Neoplasms pathology, Machine Learning, Male, Middle Aged, Neoplasm Staging, Proteome genetics, Tandem Mass Spectrometry methods, Biomarkers, Tumor blood, Early Detection of Cancer methods, Lung Neoplasms blood, Proteomics
- Abstract
Lung cancer is the most common cause of cancer-related mortality worldwide, characterized by late clinical presentation (49-53% of patients are diagnosed at stage IV) and consequently poor outcomes. One challenge in identifying biomarkers of early disease is the collection of samples from patients prior to symptomatic presentation. We used blood collected during surgical resection of lung tumors in an iTRAQ isobaric tagging experiment to identify proteins effluxing from tumors into pulmonary veins. Forty proteins were identified as having an increased abundance in the vein draining from the tumor compared to "healthy" pulmonary veins. These protein markers were then assessed in a second cohort that utilized the mass spectrometry (MS) technique: Sequential window acquisition of all theoretical fragment ion spectra (SWATH) MS. SWATH-MS was used to measure proteins in serum samples taken from 25 patients <50 months prior to and at lung cancer diagnosis and 25 matched controls. The SWATH-MS analysis alone produced an 11 protein marker panel. A machine learning classification model was generated that could discriminate patient samples from patients within 12 months of lung cancer diagnosis and control samples. The model was evaluated as having a mean AUC of 0.89, with an accuracy of 0.89. This panel was combined with the SWATH-MS data from one of the markers from the first cohort to create a 12 protein panel. The proteome signature developed for lung cancer risk can now be developed on further cohorts.
- Published
- 2019
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11. Iron requirements and uptake strategies of the globally abundant marine ammonia-oxidising archaeon, Nitrosopumilus maritimus SCM1.
- Author
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Shafiee RT, Snow JT, Zhang Q, and Rickaby REM
- Subjects
- Archaea genetics, Archaea isolation & purification, Ecosystem, Nitrification, Oxidation-Reduction, Ammonia metabolism, Ammonium Compounds metabolism, Archaea metabolism, Iron metabolism, Seawater microbiology
- Abstract
Ammonia-oxidising archaea (AOA) mediate the rate-limiting step of nitrification, the central component of the marine nitrogen cycle that converts ammonia to nitrite then nitrate. Competition with phytoplankton for ammonium and light inhibition are considered to restrict AOA activity to below the photic zone, but observations of surface nitrification now demand a further understanding of the factors driving AOA distribution and activity. Pico- to nanomolar concentrations of iron (Fe) limit the growth of microorganisms in a significant portion of the world's surface oceans, yet there is no examination of the role of Fe in AOA growth despite the process of ammonia oxidation being considered to rely on the micronutrient. Here we investigate the Fe requirements and Fe uptake strategies of the Nitrosopumilus maritimus strain SCM1, a strain representative of globally abundant marine AOA. Using trace metal clean culturing techniques, we found that N. maritimus growth is determined by Fe availability, displaying a free inorganic Fe (Fe') half saturation constant 1-2 orders of magnitude greater for cell growth than numerous marine phytoplankton and heterotrophic bacterial species driven by a reduced affinity for Fe'. In addition, we discovered that whilst unable to produce siderophores to enhance access to Fe, N. maritimus is able to use the exogenous siderophore desferrioxamine B (DFB), likely through a reductive uptake pathway analogous to that demonstrated in phytoplankton. Our work suggests AOA growth in surface waters may be Fe limited and advances our understanding of AOA physiology on the cellular and mechanistic levels with implications for ecosystem dynamics and the biogeochemical N-cycle.
- Published
- 2019
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12. Digital image analysis supports a nuclear-to-cytoplasmic ratio cutoff value below 0.7 for positive for high-grade urothelial carcinoma and suspicious for high-grade urothelial carcinoma in urine cytology specimens.
- Author
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McIntire PJ, Snow JT, Elsoukkary SS, Soong L, Sweeney J, Robinson BD, and Siddiqui MT
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- Aged, Aged, 80 and over, Biopsy, Cohort Studies, Cytodiagnosis standards, Female, Humans, Male, Middle Aged, Neoplasm Grading, Sensitivity and Specificity, Urologic Neoplasms pathology, Urologic Neoplasms urine, Cell Nucleus metabolism, Cytodiagnosis methods, Cytoplasm metabolism, Urologic Neoplasms diagnosis
- Abstract
Background: Urinary cytology is sensitive and specific for diagnosing and screening high-grade urothelial carcinomas (HGUC). The Paris System (TPS) for urinary cytology was introduced in 2016 to standardize reporting. According to TPS diagnostic categories of HGUC and suspicious for HGUC (SHGUC), the average nuclear-to-cytoplasm (N:C) ratio of atypical cells should be ≥0.7. The objective of the current study was to measure the N:C ratio of urine cytology specimens with HGUC and SHGUC diagnoses and biopsy-proven HGUC follow-up., Methods: A cohort of 64 cases (HGUC, 49 cases; SHGUC, 15 cases) from 57 patients was constructed. Urine cytology slides were scanned into whole-slide digital images. The nuclear and cytoplasmic areas were enumerated by digital image analysis (DIA), and the N:C ratios were measured., Results: In total, 640 cells were analyzed by DIA (HGUC, 490 cells; SHGUC, 150 cells). For HGUC and SHGUC, the average N:C ratios were 0.57 and 0.53, respectively. The maximum average N:C ratio was 0.73 for HGUC and 0.68 for SHGUC. HGUC had higher average N:C ratio (P < .001), higher average nuclear area (P < .001), higher average maximum N:C ratio (P = .005), and higher average maximum nuclear area (P = .006) compared with SHGUC., Conclusions: The N:C ratios for the HGUC (0.57) and SHGUC (0.53) categories are lower than those previously suggested in TPS. The authors advocate reducing the N:C ratio below the current threshold of 0.7., (© 2018 American Cancer Society.)
- Published
- 2019
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13. Direct measurement of multi-elements in high matrix samples with a flow injection ICP-MS: application to the extended Emiliania huxleyi Redfield ratio.
- Author
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Zhang Q, Snow JT, Holdship P, Price D, Watson P, and Rickaby REM
- Abstract
The quotas of a limited number of trace elements in the extended Redfield ratios have been determined before and thought to reflect the requirements of phytoplankton. However, these quotas are found to be quite variable under different environmental conditions, suggesting that the cellular trace metal quota is not an accurate measure of cellular trace metal requirement. Here we present a method that has been developed and optimised for direct analysis of 32 elements simultaneously in small volume of cell lysate in buffers with a high salt matrix (800 μL, up to 30% TDS). We then demonstrate the application of the method to resolve the extended Redfield ratio of cell requirement by measuring the intracellular trace element composition of six Emiliania huxleyi strains isolated from different locations. The method uses a quadrupole-ICP-MS with a collision/reaction cell to resolve polyatomic interferences. The ICP-MS is interfaced with an Elemental Scientific Flow Injection Automation System (FIAS). The accuracy of the analysis according to this new method is verified by measuring 2 certified reference materials, BCR 273 and BCR 414. This work presents a number of running parameters, optimised for multi-element analysis of samples with a high TDS sample matrix. This method allows direct measurement of protein samples in their native state: no alteration or digestion is needed, which simplifies the steps for sample preparation. In this study with 6 E. huxleyi strains isolated from the environment, our method reveals significant differences between whole cell and intracellular metal quotas for all strains. The intracellular metal composition, interpreted as a truer representation of organisms' metal requirements, shows an environmentally dependent signal. This suggests that, compared with whole cell metal quotas, the metalloproteins are a better indicator of metal requirements of phytoplankton under various environmental conditions.
- Published
- 2018
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14. Improved correlation of urinary cytology specimens using The Paris System in biopsy-proven upper tract urothelial carcinomas.
- Author
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McIntire PJ, Snow JT, Robinson BD, Rao RA, Goyal A, Heymann JJ, and Siddiqui MT
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Follow-Up Studies, Humans, Male, Middle Aged, Prognosis, Retrospective Studies, Risk Assessment, Urologic Neoplasms urine, Cytodiagnosis methods, Cytodiagnosis standards, Urinary Tract pathology, Urine cytology, Urologic Neoplasms classification, Urologic Neoplasms diagnosis
- Abstract
Background: Urine cytology specimens are essential for screening and monitoring high-grade urothelial carcinomas. However, inconsistent reporting and equivocal diagnostic categories have remained a challenge. The Paris System for Reporting Urinary Cytology (TPS) was developed to provide clear cytomorphologic criteria for urine cytology specimens. Significant correlation between the surgical biopsy diagnosis (SD) and TPS diagnosis (PD) has been established in lower urothelial tract carcinomas, but to the authors' knowledge limited information is available regarding upper urinary tract carcinomas., Methods: A total of 56 cytology specimens from 35 patients within 90 days of an SD of upper urinary tract carcinoma were included. Cytology was re-reviewed and assigned a PD. The original diagnosis (OD) and PD were compared with the corresponding SD to determine which correlated best., Results: The PD corresponded to the SD in 35 of 56 cases (63%), which was greater than that for the OD and SD, which were concordant in 19 of 56 cases (34%). Both the OD and PD were concordant in 18 of 56 cases (32%), and neither corresponded in 20 of 56 cases (36%). A total of 27 of 33 cases of high-grade urothelial carcinoma/carcinoma in situ on SD (82%) were identified using the PD whereas only 15 cases (45%) were identified with the OD. The number of "atypical" diagnoses in the OD was reduced from 16 of 56 cases (29%) to 7 of 56 cases (13%) using the PD. Of the 14 of 56 "negative" OD (25%), only 4 remained after implementation of the PD. A diagnosis of low-grade urothelial neoplasm was established in 6 of 20 cases (30%) with the PD compared with 3 of 20 cases with the OD (15%)., Conclusions: The authors found that reclassification with TPS improved correlation with the SD compared with previous methodologies. Specifically, TPS increased the number of high-grade urothelial carcinoma diagnoses and decreased the number of equivocal or "atypical" diagnoses. Cancer Cytopathol 2018. © 2018 American Cancer Society., (© 2018 American Cancer Society.)
- Published
- 2018
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15. Quantifying Integrated Proteomic Responses to Iron Stress in the Globally Important Marine Diazotroph Trichodesmium.
- Author
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Snow JT, Polyviou D, Skipp P, Chrismas NA, Hitchcock A, Geider R, Moore CM, and Bibby TS
- Subjects
- Chromatography, Liquid, Dose-Response Relationship, Drug, Mass Spectrometry, Stress, Physiological, Bacterial Proteins metabolism, Cyanobacteria drug effects, Cyanobacteria metabolism, Iron pharmacology, Proteome metabolism, Proteomics methods
- Abstract
Trichodesmium is a biogeochemically important marine cyanobacterium, responsible for a significant proportion of the annual 'new' nitrogen introduced into the global ocean. These non-heterocystous filamentous diazotrophs employ a potentially unique strategy of near-concurrent nitrogen fixation and oxygenic photosynthesis, potentially burdening Trichodesmium with a particularly high iron requirement due to the iron-binding proteins involved in these processes. Iron availability may therefore have a significant influence on the biogeography of Trichodesmium. Previous investigations of molecular responses to iron stress in this keystone marine microbe have largely been targeted. Here a holistic approach was taken using a label-free quantitative proteomics technique (MSE) to reveal a sophisticated multi-faceted proteomic response of Trichodesmium erythraeum IMS101 to iron stress. Increased abundances of proteins known to be involved in acclimation to iron stress and proteins known or predicted to be involved in iron uptake were observed, alongside decreases in the abundances of iron-binding proteins involved in photosynthesis and nitrogen fixation. Preferential loss of proteins with a high iron content contributed to overall reductions of 55-60% in estimated proteomic iron requirements. Changes in the abundances of iron-binding proteins also suggested the potential importance of alternate photosynthetic pathways as Trichodesmium reallocates the limiting resource under iron stress. Trichodesmium therefore displays a significant and integrated proteomic response to iron availability that likely contributes to the ecological success of this species in the ocean.
- Published
- 2015
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16. Seasonal ITCZ migration dynamically controls the location of the (sub)tropical Atlantic biogeochemical divide.
- Author
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Schlosser C, Klar JK, Wake BD, Snow JT, Honey DJ, Woodward EM, Lohan MC, Achterberg EP, and Moore CM
- Subjects
- Atlantic Ocean, Nitrogen Fixation, Cyanobacteria physiology, Seasons
- Abstract
Inorganic nitrogen depletion restricts productivity in much of the low-latitude oceans, generating a selective advantage for diazotrophic organisms capable of fixing atmospheric dinitrogen (N2). However, the abundance and activity of diazotrophs can in turn be controlled by the availability of other potentially limiting nutrients, including phosphorus (P) and iron (Fe). Here we present high-resolution data (∼0.3°) for dissolved iron, aluminum, and inorganic phosphorus that confirm the existence of a sharp north-south biogeochemical boundary in the surface nutrient concentrations of the (sub)tropical Atlantic Ocean. Combining satellite-based precipitation data with results from a previous study, we here demonstrate that wet deposition in the region of the intertropical convergence zone acts as the major dissolved iron source to surface waters. Moreover, corresponding observations of N2 fixation and the distribution of diazotrophic Trichodesmium spp. indicate that movement in the region of elevated dissolved iron as a result of the seasonal migration of the intertropical convergence zone drives a shift in the latitudinal distribution of diazotrophy and corresponding dissolved inorganic phosphorus depletion. These conclusions are consistent with the results of an idealized numerical model of the system. The boundary between the distinct biogeochemical systems of the (sub)tropical Atlantic thus appears to be defined by the diazotrophic response to spatial-temporal variability in external Fe inputs. Consequently, in addition to demonstrating a unique seasonal cycle forced by atmospheric nutrient inputs, we suggest that the underlying biogeochemical mechanisms would likely characterize the response of oligotrophic systems to altered environmental forcing over longer timescales., Competing Interests: The authors declare no conflict of interest.
- Published
- 2014
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17. Golf science research at the beginning of the twenty-first century.
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Farrally MR, Cochran AJ, Crews DJ, Hurdzan MJ, Price RJ, Snow JT, and Thomas PR
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- Humans, Sports Equipment, Biomedical Research trends, Golf injuries, Golf physiology, Golf psychology, Golf trends
- Abstract
At the beginning of the twenty-first century, there are 30,000 golf courses and 55 million people who play golf worldwide. In the USA alone, the value of golf club memberships sold in the 1990s was US dollar 3.2 billion. Underpinning this significant human activity is a wide variety of people researching and applying science to sustain and develop the game. The 11 golf science disciplines recognized by the World Scientific Congress of Golf have reported 311 papers at four world congresses since 1990. Additionally, scientific papers have been published in discipline-specific peer-reviewed journals, research has been sponsored by the two governing bodies of golf, the Royal and Ancient Golf Club of St. Andrews and the United States Golf Association, and confidential research is undertaken by commercial companies, especially equipment manufacturers. This paper reviews much of this human endeavour and points the way forward for future research into golf.
- Published
- 2003
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18. Maintenance of weight loss after a very-low-calorie diet involving behavioral treatment.
- Author
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Snow JT and Harris MB
- Subjects
- Combined Modality Therapy, Female, Follow-Up Studies, Humans, Male, Treatment Outcome, Behavior Therapy, Diet, Reducing psychology, Energy Intake, Weight Loss
- Abstract
The long-term effects of a very-low-calorie diet coupled with behavioral therapy were studied for 209 subjects. Although a low goal weight, frequent calorie counting and exercise, and a later age of onset of obesity predicted a low relative weight, most respondents had regained most of the weight they had lost.
- Published
- 1995
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19. An improved synthesis of lysinoalanine monohydrochloride.
- Author
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Finley JW and Snow JT
- Subjects
- Alanine, Lysine, Methods, Dipeptides chemical synthesis
- Published
- 1977
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20. Oxidation of sulfhydryl groups to disulfides by sulfoxides.
- Author
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Snow JT, Finley JW, and Friedman M
- Subjects
- Chemical Phenomena, Chemistry, Cysteine, Deuterium, Glutathione, Hydrogen-Ion Concentration, Kinetics, Magnetic Resonance Spectroscopy, Penicillamine, Valine, Disulfides chemical synthesis, Sulfhydryl Compounds, Sulfoxides
- Published
- 1975
- Full Text
- View/download PDF
21. A kinetic study of the hydrolysis of N-acetyl dehydroalanine methyl ester.
- Author
-
Snow JT, Finley JW, and Friedman M
- Subjects
- Chemical Phenomena, Chemistry, Physical, Dimethyl Sulfoxide, Ethanol, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Structure-Activity Relationship, Temperature, Acrylates, Alanine analogs & derivatives
- Abstract
Hydrolysis rates of N-acetyl dehydroalanine methyl ester (methyl 2-acetamidoacrylate) and related model compounds were measured in aqueous, organic and mixed aqueous media. Adding dimethylsulfoxide (DMSO) to water, retarded hydrolysis of the ester by a factor of 2 to 500, depending on the pH of the medium and concentration of DMSO. Ethanol also slowed hydrolysis, but the effect was not so pronounced. Related studies show that the acetamido group C-N bond of sodium 2-acetamido-acrylate is hydrolyzed only about 1/130 as fast as the ester group C-O bond. Aqueous dimethyl sulfoxide should by a useful medium for synthesis of peptide, amino acid and protein derivatives of N-acetyl dehydroalanine methyl ester.
- Published
- 1975
- Full Text
- View/download PDF
22. Polychlorobiphenyl congeners, p,p'-DDE, and sperm function in humans.
- Author
-
Bush B, Bennett AH, and Snow JT
- Subjects
- Chromatography, Gas, Dichlorodiphenyl Dichloroethylene adverse effects, Environmental Monitoring, Humans, Male, Polychlorinated Biphenyls adverse effects, Spermatozoa drug effects, Vasectomy, Dichlorodiphenyl Dichloroethylene analysis, Polychlorinated Biphenyls analysis, Spermatozoa physiology
- Published
- 1986
- Full Text
- View/download PDF
23. Relative reactivities of sulfhydryl groups with N-acetyl dehydroalanine and N-acetyl dehydroalanine methyl ester.
- Author
-
Snow JT, Finley JW, and Friedman M
- Subjects
- Alanine metabolism, Chemical Phenomena, Chemistry, Cysteine pharmacology, Esters, Magnetic Resonance Spectroscopy, Penicillamine pharmacology, Temperature, Time Factors, Alanine analogs & derivatives, Sulfhydryl Compounds pharmacology
- Abstract
The reaction rates in aqueous solutions of aminothiols, thiols, and other compounds with N-acetyl dehydroalanine and its methyl ester (2-acetamindoacrylic acid and methyl 2-acetamidoacrylate) were studied as a function of the structure of the thiol compound in aqueous solutions. Correction of the observed second-order rate constants to identical thiol anion concentration gave a series of computed rate constants whose logarithms showed a linear dependence on the pK's of the thiol group in similar steric environments. Comparison of the addition rates of penicillamine to N-acetyl dehydroalanine and its methyl ester showed the methyl ester to react approximately 11,400 times faster than the acid. Addition rates for thiol acids and aromatic and heterocyclic thiols were also compared; each showed sluggish reactivity with dehydroalanine, but each reacted readily with methyl dehydroalanine. The kinetic data were applied in developing a method for preparing lanthionine in high yield.
- Published
- 1976
- Full Text
- View/download PDF
24. Value of prophylactic peripheral iridectomy on the second eye in angle-closure glaucoma.
- Author
-
Snow JT
- Subjects
- Adult, Aged, Female, Humans, Male, Middle Aged, Retrospective Studies, Visual Acuity, Glaucoma prevention & control, Iris surgery
- Abstract
In a group of 250 patients with gonioscopically proved angle-closure glaucoma, 72 who did not have prophylactic peripheral iridectomy were reviewed and the adverse effects suffered by these patients were analysed. Comparison was made with 63 patients from the same group who did have peripheral iridectomy. All these patients were drawn from the Glaucoma Clinic, University Department of Ophthalmology, Manchester Royal Eye Hospital.
- Published
- 1977
25. Inhibitory effect of mercaptoamino acids on lysino-alanine formation during alkali treatment of proteins.
- Author
-
Finley JW, Snow JT, Johnston PH, and Friedman M
- Subjects
- Chemical Phenomena, Chemistry, Hydrogen-Ion Concentration, Glycine max, Sulfhydryl Compounds, Alanine analogs & derivatives, Caseins, Lysine analogs & derivatives, Mercaptoethanol, Plant Proteins
- Abstract
Alkali treatment of food proteins converts some amino acid residues to the unnatural amino acid lysinoalanine which has been found to cause kidney damage when fed to rats. Formation of lysinoalanine was essentially prevented when isolates of soy protein and casein were exposed to alkali in the presence of thio-alamino acids such as cysteine. The results suggest that added thiols minimize the formation of potentially toxic lysinoalanine.
- Published
- 1977
- Full Text
- View/download PDF
26. High resolution gas chromatographic analysis of nonpolar chlorinated hydrocarbons in human milk.
- Author
-
Bush B, Snow JT, and Connor S
- Subjects
- Chromatography, Gas, Female, Humans, Polychlorinated Biphenyls analysis, Hydrocarbons, Chlorinated analysis, Milk, Human analysis
- Abstract
A gas chromatographic method is described for the analysis of human milk to determine polychlorinated biphenyls (PCBs) as 72 congeners plus p,p'-DDE, mirex, hexachlorobenzene, and octachlorostyrene. The detection limit for individual compounds is about 0.05 ng/g when 30 g milk is analyzed. Total PCBs can be estimated with a detection limit of 1-5 ng/mL milk. Analytical precision is better than +/- 10% for all compounds at 20-50 ng/mL whole milk.
- Published
- 1983
27. Disordered eating in South-western Pueblo Indians and Hispanics.
- Author
-
Snow JT and Harris MB
- Subjects
- Adolescent, Body Image, Female, Humans, Male, New Mexico, Obesity psychology, Anorexia Nervosa psychology, Bulimia psychology, Cross-Cultural Comparison, Hispanic or Latino psychology, Indians, North American psychology
- Abstract
The present study investigated the incidence of eating disorders in two samples representing populations seldom reported upon in the eating disorder literature: Pueblo Indians and Hispanics. Subjects were 95 students from a rural, public high school serving primarily low income families. Although no ethnic differences were found, the majority of girls in both samples reported wanting to lose weight, being worried about their weight, and indulging in binge eating. Nine of the girls (11 per cent) reported eating habits consistent with the DMS III (APA, 1980) criteria for bulimia. In contrast, few boys indicated concerns about their weight or eating habits. The results suggest that eating disorders and concern about obesity are found in a variety of ethnic groups in the United States today.
- Published
- 1989
- Full Text
- View/download PDF
28. A kinetic study of the bisulphite reduction of methionine sulphoxide to methionine.
- Author
-
Snow JT, Finley JW, and Kohler GO
- Subjects
- Chemical Phenomena, Chemistry, Hydrogen-Ion Concentration, Kinetics, Oxidation-Reduction, Sulfoxides, Methionine analogs & derivatives, Sulfites
- Published
- 1976
- Full Text
- View/download PDF
29. Peripheral iridectomy in angle-closure glaucoma: a common complication.
- Author
-
Phillips CI and Snow JT
- Subjects
- Anti-Inflammatory Agents therapeutic use, Aqueous Humor physiology, Atropa belladonna therapeutic use, Atropine therapeutic use, Humans, Phenylephrine therapeutic use, Phytotherapy, Plants, Medicinal, Plants, Toxic, Postoperative Complications, Uveitis, Anterior prevention & control, Vision Tests, Glaucoma surgery, Iris surgery, Tissue Adhesions etiology
- Published
- 1967
- Full Text
- View/download PDF
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