233 results on '"Snijders K"'
Search Results
2. Dissecting lineage specific oxidative stress response dynamics using high content imaging of the hiPSC HMOX1 fluorescent reporter line
- Author
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ter Braak, B., primary, Snijders, K., additional, Fehér, A., additional, Táncos, Z., additional, Bock, I., additional, Bourguignon, A., additional, Niemeijer, M., additional, van den Berk, L., additional, Kobolák, J., additional, Wilmes, A., additional, Jennings, P., additional, Verfaillie, C., additional, Dinnyés, A., additional, and van de Water, B., additional
- Published
- 2021
- Full Text
- View/download PDF
3. Optimized inducible shRNA and CRISPR/Cas9 platforms for $\textit{in vitro}$ studies of human development using hPSCs
- Author
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Bertero, A, Pawlowski, M, Ortmann, D, Snijders, K, Yiangou, L, Cardoso de Brito, M, Brown, S, Bernard, WG, Cooper, JD, Giacomelli, E, Gambardella, L, Hannan, NRF, Iyer, D, Sampaziotis, F, Serrano, F, Zonneveld, MCF, Sinha, S, Kotter, M, Vallier, L, Bernard, William [0000-0002-2622-5115], Sampaziotis, Fotios [0000-0003-0812-7586], Sinha, Sanjay [0000-0001-5900-1209], Kotter, Mark [0000-0001-5145-7199], Vallier, Ludovic [0000-0002-3848-2602], and Apollo - University of Cambridge Repository
- Subjects
DPY30 ,shRNA ,POU5F1 ,human pluripotent stem cells ,T, brachyury ,OCT4 ,CRISPR/Cas9 - Abstract
Inducible loss of gene function experiments are necessary to uncover mechanisms underlying development, physiology and disease. However, current methods are complex, lack robustness and do not work in multiple cell types. Here we address these limitations by developing single-step optimized inducible gene knockdown or knockout (sOPTiKD or sOPTiKO) platforms. These are based on genetic engineering of human genomic safe harbors combined with an improved tetracycline-inducible system and CRISPR/Cas9 technology. We exemplify the efficacy of these methods in human pluripotent stem cells (hPSCs), and show that generation of sOPTiKD/KO hPSCs is simple, rapid and allows tightly controlled individual or multiplexed gene knockdown or knockout in hPSCs and in a wide variety of differentiated cells. Finally, we illustrate the general applicability of this approach by investigating the function of transcription factors ($\textit{OCT4}$ and $\textit{T}$), cell cycle regulators (cyclin D family members) and epigenetic modifiers ($\textit{DPY30}$). Overall, sOPTiKD and sOPTiKO provide a unique opportunity for functional analyses in multiple cell types relevant for the study of human development.
- Published
- 2016
- Full Text
- View/download PDF
4. One-year outcome after Descemet membrane endothelial keratoplasty (DMEK) comparing sulfur hexafluoride (SF 6 ) 20% versus 100% air for anterior chamber tamponade.
- Author
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Schaub F, Enders P, Snijders K, Schrittenlocher S, Siebelmann S, Heindl LM, Bachmann BO, and Cursiefen C
- Subjects
- Adult, Aged, Aged, 80 and over, Anterior Chamber, Cornea surgery, Corneal Endothelial Cell Loss diagnosis, Corneal Pachymetry, Female, Follow-Up Studies, Humans, Male, Middle Aged, Retrospective Studies, Time Factors, Treatment Outcome, Young Adult, Cornea pathology, Corneal Endothelial Cell Loss surgery, Descemet Stripping Endothelial Keratoplasty methods, Endotamponade methods, Sulfur Hexafluoride administration & dosage, Visual Acuity
- Abstract
Purpose: To investigate 1-year clinical outcome and complication rates following Descemet membrane endothelial keratoplasty (DMEK) with sulfur hexafluoride 20% (SF
6 20%) anterior chamber tamponade compared with conventionally used 100% air for primary graft attachment during DMEK surgery., Methods: Records of 1112 consecutive DMEKs were reviewed retrospectively and grouped by anterior chamber tamponade used during DMEK surgery (SF6 20% vs 100% air). Outcome measures included intraocular pressure (IOP), best spectacle-corrected visual acuity (BSCVA), endothelial cell density (ECD) and central corneal thickness (CCT) at 1, 3, 6 and 12 months after DMEK surgery. Complication rates were assessed, including intraoperative and postoperative complications, and graft detachment rate requiring rebubbling., Results: A total of 854 cases were included in this study. In 105 cases (12.3%), DMEK was performed with SF6 20%, and in 749 cases (87.7%) 100% air was used for anterior chamber tamponade. Outcome results for IOP, BSCVA, ECD and CCT at all follow-up time points were comparable for both anterior chamber tamponade groups without statistical significant differences (p≥0.05), but graft detachment rate requiring rebubbling was significantly lower in the SF6 20% group (p<0.001)., Conclusion: Whereas SF6 20% anterior chamber tamponade does not seem to negatively affect the clinical outcome of DMEK surgery within the first postoperative year, use of SF6 20% significantly reduces the rate of rebubblings., Competing Interests: Competing interests: None declared., (Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.)- Published
- 2017
- Full Text
- View/download PDF
5. Optimized inducible shRNA and CRISPR/Cas9 platforms for in vitro studies of human development using hPSCs.
- Author
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Bertero A, Pawlowski M, Ortmann D, Snijders K, Yiangou L, Cardoso de Brito M, Brown S, Bernard WG, Cooper JD, Giacomelli E, Gambardella L, Hannan NR, Iyer D, Sampaziotis F, Serrano F, Zonneveld MC, Sinha S, Kotter M, and Vallier L
- Subjects
- Cell Differentiation genetics, Cells, Cultured, Embryonic Stem Cells cytology, Gene Knockout Techniques, Humans, Induced Pluripotent Stem Cells cytology, Transcription Factors, CRISPR-Cas Systems genetics, Clustered Regularly Interspaced Short Palindromic Repeats genetics, Cyclin D genetics, Fetal Proteins genetics, Genetic Engineering methods, Nuclear Proteins genetics, Octamer Transcription Factor-3 genetics, T-Box Domain Proteins genetics
- Abstract
Inducible loss of gene function experiments are necessary to uncover mechanisms underlying development, physiology and disease. However, current methods are complex, lack robustness and do not work in multiple cell types. Here we address these limitations by developing single-step optimized inducible gene knockdown or knockout (sOPTiKD or sOPTiKO) platforms. These are based on genetic engineering of human genomic safe harbors combined with an improved tetracycline-inducible system and CRISPR/Cas9 technology. We exemplify the efficacy of these methods in human pluripotent stem cells (hPSCs), and show that generation of sOPTiKD/KO hPSCs is simple, rapid and allows tightly controlled individual or multiplexed gene knockdown or knockout in hPSCs and in a wide variety of differentiated cells. Finally, we illustrate the general applicability of this approach by investigating the function of transcription factors (OCT4 and T), cell cycle regulators (cyclin D family members) and epigenetic modifiers (DPY30). Overall, sOPTiKD and sOPTiKO provide a unique opportunity for functional analyses in multiple cell types relevant for the study of human development., Competing Interests: The authors declare no competing or financial interests., (© 2016. Published by The Company of Biologists Ltd.)
- Published
- 2016
- Full Text
- View/download PDF
6. Transcription factor-based transdifferentiation of human embryonic to trophoblast stem cells.
- Author
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Balestrini, Paula A., Abdelbaki, Ahmed, McCarthy, Afshan, Devito, Liani, Senner, Claire E., Chen, Alice E., Munusamy, Prabhakaran, Blakeley, Paul, Elder, Kay, Snell, Phil, Christie, Leila, Serhal, Paul, Odia, Rabi A., Sangrithi, Mahesh, Niakan, Kathy K., and Fogarty, Norah M. E.
- Subjects
HUMAN embryonic stem cells ,HUMAN embryos ,TRANSCRIPTION factors ,PROGENITOR cells ,GENE expression profiling - Abstract
During the first week of development, human embryos form a blastocyst composed of an inner cell mass and trophectoderm (TE) cells, the latter of which are progenitors of placental trophoblast. Here, we investigated the expression of transcripts in the human TE from early to late blastocyst stages. We identified enrichment of the transcription factors GATA2, GATA3, TFAP2C and KLF5 and characterised their protein expression dynamics across TE development. By inducible overexpression and mRNA transfection, we determined that these factors, together with MYC, are sufficient to establish induced trophoblast stem cells (iTSCs) from primed human embryonic stem cells. These iTSCs self-renew and recapitulate morphological characteristics, gene expression profiles, and directed differentiation potential, similar to existing human TSCs. Systematic omission of each, or combinations of factors, revealed the crucial importance of GATA2 and GATA3 for iTSC transdifferentiation. Altogether, these findings provide insights into the transcription factor network that may be operational in the human TE and broaden the methods for establishing cellular models of early human placental progenitor cells, which may be useful in the future to model placental-associated diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
7. Analysis of Graft Detachments and Re-Bubblings After 450 Descemet Membrane Endothelial Keratoplasty Procedures.
- Author
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Menkene, Louise Massia, Berger, Tim, Safi, Tarek, Hamon, Loïc, Munteanu, Cristian, Seitz, Berthold, and Daas, Loay
- Published
- 2024
8. Dimensional crossover of microscopic magnetic metasurfaces for magnetic field amplification.
- Author
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Lejeune, N., Fourneau, E., Barrera, A., Morris, O., Leonard, O., Arregi, J. A., Navau, C., Uhlíř, V., Bending, S., Palau, A., and Silhanek, A. V.
- Subjects
TRANSFORMATION optics ,MAGNETIC fields ,CLOAKING devices ,OPEN-ended questions ,INVISIBILITY ,ACHIEVEMENT - Abstract
Transformation optics applied to low frequency magnetic systems have been recently implemented to design magnetic field concentrators and cloaks with superior performance. Although this achievement has been amply demonstrated theoretically and experimentally in bulk 3D macrostructures, the performance of these devices at low dimensions remains an open question. In this work, we numerically investigate the non-monotonic evolution of the gain of a magnetic metamaterial field concentrator as the axial dimension is progressively shrunk. In particular, we show that in planar structures, the role played by the diamagnetic components becomes negligible, whereas the paramagnetic elements increase their magnetic field channeling efficiency. This is further demonstrated experimentally by tracking the gain of superconductor-ferromagnet concentrators through the superconducting transition. Interestingly, for thicknesses where the diamagnetic petals play an important role in the concentration gain, they also help to reduce the stray field of the concentrator, thus limiting the perturbation of the external field (invisibility). Our findings establish a roadmap and set clear geometrical limits for designing low dimensional magnetic field concentrators. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
9. Branching topology of the human embryo transcriptome revealed by Entropy Sort Feature Weighting.
- Author
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Radley, Arthur, Boeing, Stefan, and Smith, Austin
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HUMAN embryos ,STEM cell culture ,PLURIPOTENT stem cells ,ENTROPY ,TRANSCRIPTOMES ,FEATURE selection - Abstract
Analysis of single cell transcriptomics (scRNA-seq) data is typically performed after subsetting to highly variable genes (HVGs). Here, we show that Entropy Sorting provides an alternative mathematical framework for feature selection. On synthetic datasets, continuous Entropy Sort Feature Weighting (cESFW) outperforms HVG selection in distinguishing cell-state-specific genes. We apply cESFW to six merged scRNA-seq datasets spanning human early embryo development. Without smoothing or augmenting the raw counts matrices, cESFW generates a high-resolution embedding displaying coherent developmental progression from eight-cell to postimplantation stages and delineating 15 distinct cell states. The embedding highlights sequential lineage decisions during blastocyst development, while unsupervised clustering identifies branch point populations obscured in previous analyses. The first branching region, where morula cells become specified for inner cell mass or trophectoderm, includes cells previously asserted to lack a developmental trajectory. We quantify the relatedness of different pluripotent stem cell cultures to distinct embryo cell types and identify marker genes of naïve and primed pluripotency. Finally, by revealing genes with dynamic lineage-specific expression, we provide markers for staging progression from morula to blastocyst. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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10. Optimized inducible shRNA and CRISPR/Cas9 platforms for in vitro studies of human development using hPSCs
- Author
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Bertero A, Pawlowski M, Ortmann D, Snijders K, Yiangou L, Cardoso de Brito M, Brown S, Wg, Bernard, Jd, Cooper, Giacomelli E, Gambardella L, Nr, Hannan, Iyer D, Sampaziotis F, Serrano F, Mc, Zonneveld, Sinha S, Mark Kotter, and Vallier L
- Subjects
DPY30 ,Brachyury ,CRISPR/Cas9 ,Human pluripotent stem cells ,OCT4 ,POU5F1 ,ShRNA ,T
11. Understanding genomic medicine for thoracic aortic disease through the lens of induced pluripotent stem cells.
- Author
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Singh, Aminder A., Shetty, Deeti K., Jacob, Aishwarya G., Bayraktar, Semih, and Sinha, Sanjay
- Published
- 2024
- Full Text
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12. Risk factors for early graft detachment requiring rebubbling in Descemet membrane endothelial keratoplasty with imported pre-cut donor tissues.
- Author
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Chung Young Kim, Chang Ho Yoon, and Mee Kum Kim
- Published
- 2024
- Full Text
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13. Comparison of 20% SF6 and 6% C3F8 Gas for Anterior Chamber Tamponade in Endothelial Keratoplasty.
- Author
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Wiley ZC, Huang X, Staggers KA, and Hamill MB
- Subjects
- Humans, Female, Male, Aged, Retrospective Studies, Middle Aged, Visual Acuity, Aged, 80 and over, Corneal Diseases surgery, Descemet Stripping Endothelial Keratoplasty methods, Sulfur Hexafluoride administration & dosage, Fluorocarbons administration & dosage, Endotamponade methods, Anterior Chamber
- Abstract
Purpose: The aim of this study was to compare the rates of rebubbling after Descemet membrane endothelial keratoplasty (DMEK) and Descemet stripping endothelial keratoplasty (DSEK) between patients who had anterior chamber (AC) graft tamponade with 20% sulfur hexafluoride gas (SF6) and 6% perfluoropropane gas (C3F8)., Methods: The charts of 431 patients undergoing EK from June 8, 2010, to April 16, 2023, were reviewed. Patients undergoing EK alone as well as combined procedures with cataract extraction and intraocular lens implantation were included. Eyes with tube shunts, anterior chamber intraocular lenses, and large peripheral iridotomy with posterior loss of bubble, and patients undergoing cyclophotocoagulation or synechialysis were excluded. All rebubble procedures were performed within 1 month after initial surgery., Results: A total of 346 eyes using SF6 and 167 eyes using C3F8 were analyzed. Overall, 46 eyes (9%) required rebubbling; 33 eyes (10%) in the SF6 group and 13 eyes (8%) in the C3F8 group. For those patients undergoing DMEK, the odds of requiring rebubbling in the C3F8 group were about 22% lower than that of patients in the SF6 group (operating room [OR]: 0.782; P < 0.001). For patients undergoing DSEK, however, the gas type did not significantly affect rebubbling rates ( P = 0.99)., Conclusions: For DMEK, utilization of 6% C3F8 as an AC tamponade was associated with a significantly lower odds of graft rebubbling compared with 20% SF6. Gas type did not result in a significant difference for DSEK. Utilization of 6% C3F8 for graft tamponade could be considered to reduce graft detachment rates in DMEK., Competing Interests: Conflicts of interest statement: The authors have no funding or conflicts of interest to disclose., (Copyright © 2024 The Author(s). Published by Wolters Kluwer Health, Inc.)
- Published
- 2024
- Full Text
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14. Notch signalling influences cell fate decisions and HOX gene induction in axial progenitors.
- Author
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Cooper, Fay, Souilhol, Celine, Haston, Scott, Gray, Shona, Boswell, Katy, Gogolou, Antigoni, Frith, Thomas J. R., Stavish, Dylan, James, Bethany M., Bose, Daniel, Dale, Jacqueline Kim, and Tsakiridis, Anestis
- Subjects
HOMEOBOX genes ,NOTCH genes ,HUMAN embryonic stem cells ,CELL communication ,GENE expression ,GENETIC regulation - Abstract
The generation of the post-cranial embryonic body relies on the coordinated production of spinal cord neurectoderm and presomitic mesoderm cells from neuromesodermal progenitors (NMPs). This process is orchestrated by pro-neural and pro-mesodermal transcription factors that are co-expressed in NMPs together with Hox genes, which are essential for axial allocation of NMP derivatives. NMPs reside in a posterior growth region, which is marked by the expression of Wnt, FGF and Notch signalling components. Although the importance of Wnt and FGF in influencing the induction and differentiation of NMPs is well established, the precise role of Notch remains unclear. Here, we show that the Wnt/FGF-driven induction of NMPs from human embryonic stem cells (hESCs) relies on Notch signalling. Using hESC-derived NMPs and chick embryo grafting, we demonstrate that Notch directs a pro-mesodermal character at the expense of neural fate. We show that Notch also contributes to activation of HOX gene expression in human NMPs, partly in a noncell-autonomous manner. Finally, we provide evidence that Notch exerts its effects via the establishment of a negative-feedback loopwith FGF signalling. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
15. Analysis of Graft Detachments and Re-Bubblings After 450 Descemet Membrane Endothelial Keratoplasty Procedures.
- Author
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Massia Menkene L, Berger T, Safi T, Hamon L, Munteanu C, Seitz B, and Daas L
- Subjects
- Humans, Retrospective Studies, Male, Female, Aged, Middle Aged, Aged, 80 and over, Reoperation, Endotamponade, Postoperative Complications, Descemet Membrane surgery, Descemet Membrane pathology, Fuchs' Endothelial Dystrophy surgery, Corneal Diseases surgery, Corneal Diseases diagnosis, Endothelium, Corneal pathology, Descemet Stripping Endothelial Keratoplasty methods, Tomography, Optical Coherence methods, Visual Acuity physiology, Graft Rejection
- Abstract
Purpose: To objectify the indication for re-bubbling by analyzing graft detachments (GDs) after Descemet membrane endothelial keratoplasty., Methods: In this retrospective monocentric observational study, re-bubbling cases of 450 Descemet membrane endothelial keratoplasties and the percentage of the residual gas filling (RGF) in the anterior chamber on the first postoperative day were collected. The number/location/extent of GDs and the corneal thickness above GDs were analyzed using anterior segment optical coherence tomography., Results: From a total of 450 grafts, 384 (85.3%) had at least a minimal degree GD. One hundred twenty-two of 450 grafts (27.1%) underwent at least 1 re-bubbling. The mean RGF was significantly lower in eyes with GD (67.7 ± 12.6%) than in eyes without GD (74.2 ± 11.3%). GDs occurred most frequently in the inferotemporal quadrant (46.0%). GDs were significantly more likely to require a re-bubbling when the central parts of the graft were affected (94.0% vs. 35.7%). The number of detachments per graft was directly proportional to the re-bubbling rate. The GDs which required a re-bubbling were on average 56 μm higher and 461 μm wider than the untreated ones. The cornea above the GDs that needed a re-bubbling was significantly thicker than above the untreated GDs (mean 988 ± 102 μm vs. 951 ± 99 μm)., Conclusions: The RGF seems to be a major influencing factor for graft attachment. The most susceptible location of the GD is inferotemporal. The main factors that need to be investigated to decide if a re-bubbling is required are the number of detachments per graft, their dimensions, whether the central portions of the graft are involved, and the corneal thickness above GDs., Competing Interests: The authors have no funding or conflicts of interest to disclose., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2024
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16. Retrospective Study of Preoperative Laser Peripheral Iridotomy Versus Intraoperative Surgical Peripheral Iridectomy in Descemet Membrane Endothelial Keratoplasty.
- Author
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Warren, Nichelle, Sun, Lucy, Behshad, Soroosh, Joung Kim, and Thulasi, Praneetha
- Published
- 2024
- Full Text
- View/download PDF
17. Incidence and management of early postoperative complications in lamellar corneal transplantation.
- Author
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Romano, Davide, Aiello, Francesco, Parekh, Mohit, Levis, Hannah J., Gadhvi, Kunal A., Moramarco, Antonio, Viola, Pietro, Fontana, Luigi, Semeraro, Francesco, and Romano, Vito
- Subjects
CORNEAL transplantation ,SURGICAL complications ,DESCEMET membrane endothelial keratoplasty ,DESCEMET stripping automated endothelial keratoplasty ,POSTOPERATIVE care ,LITERATURE reviews - Abstract
Purpose: To provide a comprehensive review of the incidence, risk factors, and management of early complications after deep anterior lamellar keratoplasty (DALK), Descemet stripping automated keratoplasty (DSAEK), and Descemet membrane endothelial keratoplasty (DMEK). Methods: A literature review of complications, that can occur from the time of the transplant up to 1 month after the transplant procedure, was conducted. Case reports and case series were included in the review. Results: Complications in the earliest postoperative days following anterior and posterior lamellar keratoplasty have shown to affect graft survival. These complications include, but are not limited to, double anterior chamber, sclerokeratitis endothelial graft detachment, acute glaucoma, fluid misdirection syndrome, donor-transmitted and recurrent infection, and Uretts-Zavalia syndrome. Conclusion: It is essential for surgeons and clinicians to not only be aware of these complications but also know how to manage them to minimize their impact on long-term transplant survival and visual outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
18. Manipulating and studying gene function in human pluripotent stem cell models.
- Author
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Balmas, Elisa, Sozza, Federica, Bottini, Sveva, Ratto, Maria Luisa, Savorè, Giulia, Becca, Silvia, Snijders, Kirsten Esmee, and Bertero, Alessandro
- Subjects
PLURIPOTENT stem cells ,HUMAN stem cells ,HUMAN biology ,GENOME editing ,RNA interference - Abstract
Human pluripotent stem cells (hPSCs) are uniquely suited to study human development and disease and promise to revolutionize regenerative medicine. These applications rely on robust methods to manipulate gene function in hPSC models. This comprehensive review aims to both empower scientists approaching the field and update experienced stem cell biologists. We begin by highlighting challenges with manipulating gene expression in hPSCs and their differentiated derivatives, and relevant solutions (transfection, transduction, transposition, and genomic safe harbor editing). We then outline how to perform robust constitutive or inducible loss‐, gain‐, and change‐of‐function experiments in hPSCs models, both using historical methods (RNA interference, transgenesis, and homologous recombination) and modern programmable nucleases (particularly CRISPR/Cas9 and its derivatives, i.e., CRISPR interference, activation, base editing, and prime editing). We further describe extension of these approaches for arrayed or pooled functional studies, including emerging single‐cell genomic methods, and the related design and analytical bioinformatic tools. Finally, we suggest some directions for future advancements in all of these areas. Mastering the combination of these transformative technologies will empower unprecedented advances in human biology and medicine. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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19. Transcription factor combinations that define human astrocyte identity encode significant variation of maturity and function.
- Author
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Baranes, Koby, Hastings, Nataly, Rahman, Saifur, Poulin, Noah, Tavares, Joana M., Kuan, Wei‐Li, Syed, Najeeb, Kunz, Meik, Blighe, Kevin, Belgard, T. Grant, and Kotter, Mark R. N.
- Published
- 2023
- Full Text
- View/download PDF
20. Differentiation and Subculturing of Renal Proximal Tubular‐like Cells Derived from Human iPSC.
- Author
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Meijer, Tamara, Naderlinger, Elisabeth, Jennings, Paul, and Wilmes, Anja
- Published
- 2023
- Full Text
- View/download PDF
21. Risk of Intraocular Lens Opacification After Endothelial Keratoplasty for Different Intraocular Lens Models: A Retrospective Single-Center Cohort Study.
- Author
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Lorenzana-Blanco, Natalia, Velarde-Rodríguez, Gonzalo, Corte-Alonso, Sofía, Mahillo-Fernández, Ignacio, García-Sandoval, Blanca, Jiménez-Alfaro, Ignacio, and Alejandre-Alba, Nicolás
- Published
- 2023
- Full Text
- View/download PDF
22. Arginine 65 methylation of Neurogenin 3 by PRMT1 is required for pancreatic endocrine development of hESCs.
- Author
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Cho, Gahyang, Hyun, Kwangbeom, Choi, Jieun, Shin, Eunji, Kim, Bumsoo, Kim, Hail, Kim, Jaehoon, and Han, Yong-Mahn
- Published
- 2023
- Full Text
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23. Technical challenges of studying early human development.
- Author
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Rugg-Gunn, Peter J., Moris, Naomi, and Tam, Patrick P. L.
- Subjects
GASTRULATION ,HUMAN embryos ,HUMAN experimentation ,EMBRYOS ,EMBRYOLOGY ,INFERTILITY - Abstract
Recent years have seen exciting progress across human embryo research, including new methods for culturing embryos, transcriptional profiling of embryogenesis and gastrulation, mapping lineage trajectories, and experimenting on stem cell-based embryo models. These advances are beginning to define the dynamical principles of development across stages, tissues and organs, enabling a better understanding of human development before birth in health and disease, and potentially leading to improved treatments for infertility and developmental disorders. However, there are still significant roadblocks en route to this goal. Here, we highlight technical challenges to studying early human development and propose ways and means to overcome some of these constraints. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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24. LA INVESTIGACIÓN BIOTECNOLÓGICA CON SERES HUMANOS EN EDAD EMBRIONARIA.
- Author
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Elena Moya, Graciela Sara
- Subjects
HUMAN biology ,HUMAN embryos ,FERTILIZATION in vitro ,MEDICAL research ,HUMAN body ,SOMATIC cell nuclear transfer ,HUMAN embryology - Abstract
Copyright of Vida y Ética is the property of Pontificia Universidad Catolica Argentina and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2023
25. Transferability of an Artificial Intelligence Algorithm Predicting Rebubblings After Descemet Membrane Endothelial Keratoplasty.
- Author
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Hayashi, Takahiko, Iliasian, Rosa M., Matthaei, Mario, Schrittenlocher, Silvia, Masumoto, Hiroki, Tanabe, Mao, Tabuchi, Hitoshi, Siggel, Robert, Bachmann, Björn, Cursiefen, Claus, and Siebelmann, Sebastian
- Published
- 2023
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- View/download PDF
26. Oridonin ameliorates acetaminophen‐induced acute liver injury through ATF4/PGC‐1α pathway.
- Author
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Yu, Dongsheng, Li, Jiye, Wang, Yu, Guo, Danfeng, Zhang, Xiaodan, Chen, Mingming, and Zhou, Zheng
- Subjects
CYTOCHROME P-450 CYP2E1 ,LIVER injuries ,AMINO acid residues ,BIOTRANSFORMATION (Metabolism) ,NALOXONE ,ENDOPLASMIC reticulum ,ADIPOGENESIS - Abstract
Acetaminophen (APAP) overdose‐induced acute liver injury (ALI) causes hepatocyte cell death, oxidative stress, and inflammation. Oridonin (Ori), a covalent NLRP3‐inflammasome inhibitor, ameliorates APAP‐induced ALI through an unclear molecular mechanism. This study found that Ori decreased hepatic cytochrome P450 2E1 level and increased glutathione content to prevent APAP metabolism, and then reduced the necrotic area, improved liver function, and inhibited APAP‐induced proinflammatory cytokines and oxidative stress. Ori also decreased activating transcription factor 4 (ATF4) protein levels and increased peroxisome proliferator‐activated receptor‐γ coactivator‐1α (PGC‐1α) to reduce APAP‐induced endoplasmic reticulum stress activation and mitochondrial dysfunction. Furthermore, western blot and luciferase assay found that ATF4 inhibited transcription in the PGC‐1α promoter −507 to −495 region to reduce PGC‐1α levels, while ATF4 knockdown neutralized the hepatoprotective effect of Ori. Molecular docking showed that Ori bound to ATF4's amino acid residue glutamate 302 through 6, 7, and 18 hydroxyl bands. Our findings demonstrated that Ori prevented metabolic activation of APAP and further inhibited the ATF4/PGC‐1α pathway to alleviate APAP overdose‐induced hepatic toxicity, which illuminated its potential therapeutic effects on ALI. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
27. Preimplantation embryo gene expression: 56 years of discovery, and counting.
- Author
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Latham, Keith E.
- Published
- 2023
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28. Expanding the apelin receptor pharmacological toolbox using novel fluorescent ligands.
- Author
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Williams, Thomas L., Macrae, Robyn G. C., Kuc, Rhoda E., Brown, Alastair J. H., Maguire, Janet J., and Davenport, Anthony P.
- Subjects
APELIN ,DRUG discovery ,LIGANDS (Biochemistry) ,KIDNEY cortex ,KIDNEY tubules - Abstract
Introduction: The apelin receptor binds two distinct endogenous peptides, apelin and ELA, which act in an autocrine/paracrine manner to regulate the human cardiovascular system. As a class A GPCR, targeting the apelin receptor is an attractive therapeutic strategy. With improvements in imaging techniques, and the stability and brightness of dyes, fluorescent ligands are becoming increasingly useful in studying protein targets. Here, we describe the design and validation of four novel fluorescent ligands; two based on [Pyr1]apelin-13 (apelin488 and apelin647), and two based on ELA-14 (ELA488 and ELA647). Methods: Fluorescent ligands were pharmacologically assessed using radioligand and functional in vitro assays. Apelin647 was validated in high content imaging and internalisation studies, and in a clinically relevant human embryonic stem cell-derived cardiomyocyte model. Apelin488 and ELA488 were used to visualise apelin receptor binding in human renal tissue. Results: All four fluorescent ligands retained the ability to bind and activate the apelin receptor and, crucially, triggered receptor internalisation. In high content imaging studies, apelin647 bound specifically to CHO-K1 cells stably expressing apelin receptor, providing proof-of-principle for a platform that could screen novel hits targeting this GPCR. The ligand also bound specifically to endogenous apelin receptor in stem cell-derived cardiomyocytes. Apelin488 and ELA488 bound specifically to apelin receptor, localising to blood vessels and tubules of the renal cortex. Discussion: Our data indicate that the described novel fluorescent ligands expand the pharmacological toolbox for studying the apelin receptor across multiple platforms to facilitate drug discovery. [ABSTRACT FROM AUTHOR]
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- 2023
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29. Inducible apelin receptor knockdown reduces differentiation efficiency and contractility of hESC-derived cardiomyocytes.
- Author
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Macrae, Robyn G C, Colzani, Maria T, Williams, Thomas L, Bayraktar, Semih, Kuc, Rhoda E, Pullinger, Anna L, Bernard, William G, Robinson, Emma L, Davenport, Emma E, Maguire, Janet J, Sinha, Sanjay, and Davenport, Anthony P
- Subjects
APELIN ,G protein coupled receptors ,DOWNREGULATION ,CARDIOVASCULAR development ,CARDIOVASCULAR system - Abstract
Aims The apelin receptor, a G protein-coupled receptor, has emerged as a key regulator of cardiovascular development, physiology, and disease. However, there is a lack of suitable human in vitro models to investigate the apelinergic system in cardiovascular cell types. For the first time we have used human embryonic stem cell-derived cardiomyocytes (hESC-CMs) and a novel inducible knockdown system to examine the role of the apelin receptor in both cardiomyocyte development and to determine the consequences of loss of apelin receptor function as a model of disease. Methods and results Expression of the apelin receptor and its ligands in hESCs and hESC-CMs was determined. hESCs carrying a tetracycline-inducible short hairpin RNA targeting the apelin receptor were generated using the sOPTiKD system. Phenotypic assays characterized the consequences of either apelin receptor knockdown before hESC-CM differentiation (early knockdown) or in 3D engineered heart tissues as a disease model (late knockdown). hESC-CMs expressed the apelin signalling system at a similar level to the adult heart. Early apelin receptor knockdown decreased cardiomyocyte differentiation efficiency and prolonged voltage sensing, associated with asynchronous contraction. Late apelin receptor knockdown had detrimental consequences on 3D engineered heart tissue contractile properties, decreasing contractility and increasing stiffness. Conclusions We have successfully knocked down the apelin receptor, using an inducible system, to demonstrate a key role in hESC-CM differentiation. Knockdown in 3D engineered heart tissues recapitulated the phenotype of apelin receptor down-regulation in a failing heart, providing a potential platform for modelling heart failure and testing novel therapeutic strategies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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30. Carbon nanotube substrates enhance SARS-CoV-2 spike protein ion yields in matrix-assisted laser desorption–ionization mass spectrometry.
- Author
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Schenkel, T., Snijders, A. M., Nakamura, K., Seidl, P. A., Mak, B., Obst-Huebl, L., Knobel, H., Pong, I., Persaud, A., van Tilborg, J., Ostermayr, T., Steinke, S., Blakely, E. A., Ji, Q., Javey, A., Kapadia, R., Geddes, C. G. R., and Esarey, E.
- Subjects
MATRIX-assisted laser desorption-ionization ,MASS spectrometry ,CARBON nanotubes ,MULTIWALLED carbon nanotubes ,SARS-CoV-2 ,IONS - Abstract
Nanostructured surfaces enhance ion yields in matrix-assisted laser desorption–ionization mass spectrometry (MALDI-MS). The spike protein complex, S1, is one fingerprint signature of Sars-CoV-2 with a mass of 75 kDa. Here, we show that MALDI-MS yields of Sars-CoV-2 spike protein ions in the 100 kDa range are enhanced 50-fold when the matrix–analyte solution is placed on substrates that are coated with a dense forest of multi-walled carbon nanotubes, compared to yields from uncoated substrates. Nanostructured substrates can support the development of mass spectrometry techniques for sensitive pathogen detection and environmental monitoring. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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31. Steuerung der ultraschnellen Öffnungs‐ und Schließungsdynamik eines photochromen Koordinationskäfigs durch Gastmoleküle.
- Author
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Artmann, Kevin, Li, Ru‐Jin, Juber, Selina, Benchimol, Elie, Schäfer, Lars V., Clever, Guido H., and Nuernberger, Patrick
- Abstract
Copyright of Angewandte Chemie is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2022
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32. Steering the Ultrafast Opening and Closure Dynamics of a Photochromic Coordination Cage by Guest Molecules.
- Author
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Artmann, Kevin, Li, Ru‐Jin, Juber, Selina, Benchimol, Elie, Schäfer, Lars V., Clever, Guido H., and Nuernberger, Patrick
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SMALL molecules ,MOLECULES ,CHARGE transfer ,SUPRAMOLECULAR chemistry ,SPECTROMETRY - Abstract
Photochemical studies on supramolecular hosts that can encapsulate small guest molecules commonly focus on three aspects: photoswitching the cage to release or trap the guest, the effect of the confining environment on the guest, and light‐induced exciton or charge transfer within the cage structure. Here, we exploit ultrafast spectroscopy to address how the guest alters the photoswitching characteristics of the cage. For this, the impacts of three disparate guest compounds on ring‐opening or ring‐closure of a dithienylethene (DTE) ligand in a photoswitchable DTE‐based coordination cage are juxtaposed. The guest modulates both outcome and timescale of the cage's photodynamics, by an interplay of structural strain, heavy‐atom effect, and enhancement of charge‐transfer processes exercised by the guest on the photo‐excited cage. The approach might prove beneficial for attuning the applicability of photoswitchable nanocontainers and desired guest compounds. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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33. LMNA Reduced Acquired Resistance to Erlotinib in NSCLC by Reversing the Epithelial–Mesenchymal Transition via the FGFR/MAPK/c-fos Signaling Pathway.
- Author
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Hu, Chunsheng, Zhou, Anting, Hu, Xin, Xiang, Yu, Huang, Mengjun, Huang, Jiuhong, Yang, Donglin, and Tang, Yan
- Subjects
EPIDERMAL growth factor receptors ,EPITHELIAL-mesenchymal transition ,ERLOTINIB ,CELLULAR signal transduction ,NON-small-cell lung carcinoma ,PROTEIN-tyrosine kinase inhibitors ,CELL migration - Abstract
For patients exhibiting non-small-cell lung cancer (NSCLC) with activating epidermal growth factor receptor (EGFR) mutations, epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs) are a first-line treatment. However, most patients who initially responded to EGFR-TKIs eventually developed acquired resistance, limiting the effectiveness of therapy. It has long been known that epithelial–mesenchymal transition (EMT) leads to acquired resistance to EGFR-TKIs in NSCLC. However, the mechanisms underlying the resistance dependent on EMT are unknown. This research aimed to reveal the effects of LMNA in the regulation of acquired resistance to erlotinib by EMT in NSCLC. The acquired erlotinib-resistant cells (HCC827/ER) were induced by gradual increase of concentrations of erlotinib in erlotinib-sensitive HCC827 cells. RNA sequencing and bioinformatics analysis were performed to uncover the involvement of LMNA in the EMT process that induced acquired resistance to erlotinib. The effect of LMNA on cell proliferation and migration was measured by clone-formation, wound-healing, and transwell assays, respectively. The EMT-related protein, nuclear shape and volume, and cytoskeleton changes were examined by immunofluorescence. Western blot was used to identify the underlying molecular mechanism of LMNA regulation of EMT. HCC827/ER cells with acquired resistance to erlotinib underwent EMT and exhibited lower LMNA expression compared to parental sensitive cells. LMNA negatively regulated the expression of EMT markers; HCC827/ER cells showed a significant up-regulation of mesenchymal markers, such as CDH2, SNAI2, VIM, ZEB1, and TWIST1. The overexpression of LMNA in HCC827/ER cells significantly inhibited EMT and cell proliferation, and this inhibitory effect of LMNA was enhanced in the presence of 2.5 μM erlotinib. Furthermore, a decrease in LMNA expression resulted in a higher nuclear deformability and cytoskeletal changes. In HCC827/ER cells, AKT, FGFR, ERK1/2, and c-fos phosphorylation levels were higher than those in HCC827 cells; Furthermore, overexpression of LMNA in HCC827/ER cells reduced the phosphorylation of AKT, ERK1/2, c-fos, and FGFR. In conclusion, our findings first demonstrated that downregulation of LMNA promotes acquired EGFR-TKI resistance in NSCLC with EGFR mutations by EMT. LMNA inhibits cell proliferation and migration of erlotinib-resistant cells via inhibition of the FGFR/MAPK/c-fos signaling pathway. These findings indicated LMNA as a driver of acquired resistance to erlotinib and provided important information about the development of resistance to erlotinib treatment in NSCLC patients with EGFR mutations. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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34. Placental MRI Predicts Fetal Oxygenation and Growth Rates in Sheep and Human Pregnancy.
- Author
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Flouri, Dimitra, Darby, Jack R. T., Holman, Stacey L., Cho, Steven K. S., Dimasi, Catherine G., Perumal, Sunthara R., Ourselin, Sebastien, Aughwane, Rosalind, Mufti, Nada, Macgowan, Christopher K., Seed, Mike, David, Anna L., Melbourne, Andrew, and Morrison, Janna L.
- Subjects
FETAL development ,FETAL growth retardation ,SMALL for gestational age ,FETAL MRI ,HIGH-risk pregnancy ,FETAL anoxia ,OXYGEN in the blood - Abstract
Magnetic resonance imaging (MRI) assessment of fetal blood oxygen saturation (SO2) can transform the clinical management of high‐risk pregnancies affected by fetal growth restriction (FGR). Here, a novel MRI method assesses the feasibility of identifying normally grown and FGR fetuses in sheep and is then applied to humans. MRI scans are performed in pregnant ewes at 110 and 140 days (term = 150d) gestation and in pregnant women at 28+3 ± 2+5 weeks to measure feto‐placental SO2. Birth weight is collected and, in sheep, fetal blood SO2 is measured with a blood gas analyzer (BGA). Fetal arterial SO2 measured by BGA predicts fetal birth weight in sheep and distinguishes between fetuses that are normally grown, small for gestational age, and FGR. MRI feto‐placental SO2 in late gestation is related to fetal blood SO2 measured by BGA and body weight. In sheep, MRI feto‐placental SO2 in mid‐gestation is related to fetal SO2 later in gestation. MRI feto‐placental SO2 distinguishes between normally grown and FGR fetuses, as well as distinguishing FGR fetuses with and without normal Doppler in humans. Thus, a multi‐compartment placental MRI model detects low placental SO2 and distinguishes between small hypoxemic fetuses and normally grown fetuses. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
35. Descemet membrane endothelial keratoplasty: Update on preoperative considerations, surgical techniques, and outcomes.
- Author
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Singh, Prabhakar, Sinha, Akanksha, Nagpal, Ritu, and Chaurasia, Sunita
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ENDOTHELIUM ,CORNEA diseases ,CYTOMETRY ,RETROSPECTIVE studies ,VISUAL acuity ,EPITHELIAL cells ,CORNEA - Abstract
Descemet membrane endothelial keratoplasty (DMEK) is the closest to the physiological replacement of endothelial cells. In the initial years, the technique was surgically challenging. Over the years, with better understanding and modifications in the surgical steps, the technique has evolved as an alternative to more popular procedure Descemet stripping endothelial keratoplasty. The article highlights the various preoperative, intraoperative, and postoperative nuances of DMEK. Additionally, it summarizes the various comparative and noncomparative studies on DMEK outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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36. Combined or sequential DMEK in cases of cataract and Fuchs endothelial corneal dystrophy-A systematic review and meta-analysis.
- Author
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Romano V, Passaro ML, Bachmann B, Baydoun L, Ni Dhubhghaill S, Dickman M, Levis HJ, Parekh M, Rodriguez-Calvo-De-Mora M, Costagliola C, Virgili G, and Semeraro F
- Subjects
- Humans, Endothelium, Corneal transplantation, Retrospective Studies, Descemet Membrane surgery, Cell Count, Fuchs' Endothelial Dystrophy surgery, Descemet Stripping Endothelial Keratoplasty adverse effects, Cataract complications
- Abstract
To compare the outcomes of Descemet membrane endothelial keratoplasty (DMEK) performed after phacoemulsification and intraocular lens (IOL) implantation (sequential DMEK) and DMEK combined with phacoemulsification and IOL implantation (combined DMEK) in patients with Fuchs endothelial corneal dystrophy (FECD) and cataract. Systematic literature review and meta-analysis performed according to the PRISMA guidelines and registered in PROSPERO. Literature searches were conducted in Medline and Scopus. Comparative studies reporting sequential DMEK and combined DMEK in FECD patients were included. The main outcome measure of the study was the corrected distance visual acuity (CDVA) improvement. Secondary outcomes were postoperative endothelial cell density (ECD), rebubbling rate and primary graft failure rate. Bias risk was assessed and a quality appraisal of the body of evidence was completed using the Cochrane Robin-I tool. A total of 667 eyes (5 studies) were included in this review, 292 eyes (43.77%) underwent a combined DMEK, while 375 (56.22%) eyes underwent a sequential DMEK surgery. We found no evidence of a difference between the two groups (mean difference, 95% CI) regarding: (1) CDVA improvement (-0.06; -0.14, 0.03 LogMAR; 3 studies, I
2 : 0%; p = 0.86); (2) postoperative ECD (-62; -190, 67 cells/mm2 ; 4 studies, I2 : 67%; p = 0.35); (3) rebubbling (risks ratio: 1.04; 0.59, 1.85; 4 studies, I2 : 48%; p = 0.89); and primary graft failure rate (risks ratio: 0.91; 0.32, 2.57; 3 studies, I2 : 0%; p = 0.86). Of all the 5 non-randomized studies, all (100%) were graded as low quality. The overall quality of the analysed studies was low. Randomized controlled trials are needed to confirm no difference or superiority of one approach in terms of CDVA, endothelial cell count and postoperative complication rate between the two arms., (© 2023 The Authors. Acta Ophthalmologica published by John Wiley & Sons Ltd on behalf of Acta Ophthalmologica Scandinavica Foundation.)- Published
- 2024
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37. OCT4 regulates WNT/β-catenin signaling and prevents mesoendoderm differentiation by repressing EOMES in porcine pluripotent stem cells.
- Author
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Xu T, Su P, Wu L, Li D, Qin W, Li Q, Zhou J, and Miao YL
- Subjects
- Animals, beta Catenin genetics, beta Catenin metabolism, Chromatin metabolism, Swine, T-Box Domain Proteins metabolism, Octamer Transcription Factor-3 metabolism, Cell Line, Cell Differentiation genetics, Pluripotent Stem Cells cytology, Pluripotent Stem Cells metabolism, Wnt Signaling Pathway genetics
- Abstract
The regulatory network between signaling pathways and transcription factors (TFs) is crucial for the maintenance of pluripotent stem cells. However, little is known about how the key TF OCT4 coordinates signaling pathways to regulate self-renewal and lineage differentiation of porcine pluripotent stem cells (pPSCs). Here, we explored the function of OCT4 in pPSCs by transcriptome and chromatin accessibility analysis. The TFs motif enrichment analysis revealed that, following OCT4 knockdown, the regions of increased chromatin accessibility were enriched with EOMES, GATA6, and FOXA1, indicating that pPSCs differentiated toward the mesoendoderm (ME) lineage. Besides, pPSCs rapidly differentiated into ME when the WNT/β-catenin inhibitor XAV939 was removed. However, the ME differentiation of pPSCs caused by OCT4 knockdown did not rely on the activation of WNT/β-catenin signaling because the target gene of WNT/β-catenin signaling, AXIN2 was not upregulated after OCT4 knockdown, despite significant upregulation of WLS and some WNT ligands. Importantly, OCT4 is directly bound to the promoter and enhancers of EOMES and repressed its transcription. Overexpression of EOMES was sufficient to induce ME differentiation in the presence of XAV939. These results demonstrate that OCT4 can regulate WNT/β-catenin signaling and prevent ME differentiation of pPSCs by repressing EOMES transcription., (© 2023 Wiley Periodicals LLC.)
- Published
- 2023
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38. Clinical Value and Treatment Progress of Prenatal Ultrasonography in Twin Pregnancy: A Systematic Review.
- Author
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Lihua Zou, Jianzheng Yang, Aiping Min, Yang Yin, and Minxing Li
- Abstract
Assisted reproductive technology has continued to develop in recent years, the technology has become more and more mature, and it has improved the total gestational age of the population. Assisted reproductive technology has improved twin pregnancy rates with the use of ovulation-inducing drugs. The risk factor of twins is much higher than singletons, and adverse pregnancy outcomes such as stillbirth and premature birth are more likely to occur than singletons, especially the special complications of monochorionic twins (MC), and the neonatal mortality and morbidity are also increased. Prenatal diagnosis and prognosis of twin pregnancy, as well as therapeutic interventions, are of current concern. Ultrasound can realize the understanding of intrauterine growth and development of twin pregnancy fetuses during pregnancy, can more accurately determine gestational age, organ function, and maturity, and timely detect fetal growth and development abnormalities in twin pregnancy, while the prognosis and treatment still need further improvement. The purpose of this study was to investigate the clinical value and treatment progress of prenatal ultrasound monitoring in twin pregnancy. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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39. Insights to maternal regulation of the paternal genome in mammalian livestock embryos: A mini-review.
- Author
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Daigneault, Bradford W.
- Subjects
MAMMALIAN embryos ,GENOMES ,GENETIC transcription regulation ,DOMESTIC animals ,LABORATORY animals - Abstract
This mini-review focuses on current knowledge regarding maternal regulation of the paternal genome in early embryos of mammalian livestock species. Emphasis has been placed on regulatory events described for maternally imprinted genes and further highlights transcriptional regulation of the postfertilization paternal genome by maternal factors. Specifically, the included content aims to summarize genomic and epigenomic contributions of paternally expressed genes, their regulation by the maternal embryo environment, and chromatin structure that are indispensable for early embryo development. The accumulation of current knowledge will summarize conserved allelic function among species to include molecular and genomic studies across large domestic animals and humans with reference to founding experimental animal models. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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40. Reprogenetic Technologies and the Valuing of the Biogenetic Family.
- Subjects
FAMILY values ,REPRODUCTIVE technology ,RISK assessment - Abstract
Reprogenetic technologies, which combine the power of reproductive technologies with the tools of genetic science and technology, give prospective parents a remarkable degree of control over a variety of their offspring's characteristics. Not uncommonly, proponents of these technologies treat them as mere value‐neutral tools, limiting their assessments to risk and benefit considerations narrowly conceptualized. However, such assessments are ethically unsound. Far from being value‐neutral, reprogenetic technologies support or alter human values by mediating our perceptions of the world and our reasons for action. In this paper, I focus in particular on the biological or genetic family and show how reprogenetic technologies reinforce the value that such families have in many societies. I also explore the negative consequences of ignoring the value‐ladenness of reprogenetic technologies. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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41. Descemetorhexis Without Endothelial Keratoplasty in Fuchs Endothelial Corneal Dystrophy: A Systematic Review and Meta-Analysis.
- Author
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Franceschino, Adrien, Dutheil, Frédéric, Pereira, Bruno, Watson, Stephanie L., Chiambaretta, Frédéric, and Navel, Valentin
- Published
- 2022
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- View/download PDF
42. Species-Specific Enhancer Activity of OCT4 in Porcine Pluripotency: The Porcine OCT4 Reporter System Could Monitor Pluripotency in Porcine Embryo Development and Embryonic Stem Cells.
- Author
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Kim, Seung-Hun, Lee, Mingyun, Choi, Kwang-Hwan, Jeong, Jinsol, Lee, Dong-Kyung, Oh, Jong-Nam, Choe, Gyung Cheol, and Lee, Chang-Kyu
- Subjects
EMBRYOLOGY ,EMBRYONIC stem cells ,EMBRYOS ,STEM cells - Abstract
The present study examined the activity and function of the pig OCT4 enhancer in the porcine early embryonic development stage and porcine authentic embryonic stem cells. OCT4 is known as a pluripotent regulator, and its upstream regulatory region-based dual-fluorescence protein reporter system controlled by distal and proximal enhancers is broadly used in studies examining the states and mechanism of pluripotency. We analyzed how this reporter system functions during early embryo development and in stem cells using a previously established porcine-specific reporter system. We demonstrated that the porcine OCT4 distal enhancer and proximal enhancer were activated with different expression patterns simultaneously as the expression of pluripotent marker genes changed during the development of in vitro pathenotes and the establishment of porcine embryonic stem cells (ESCs). This work demonstrates the applicability of the porcine OCT4 upstream region-derived dual-fluorescence reporter system, which may be applied to investigations of species-specific pluripotency in porcine-origin cells. These reporter systems may be useful tools for studies of porcine-specific pluripotency, early embryo development, and embryonic stem cells. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
43. Adsorbate‐Induced Modifications in the Optical Response of the Si(553)–Au Surface.
- Author
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Chandola, Sandhya, Sanna, Simone, Hogan, Conor, Speiser, Eugen, Plaickner, Julian, and Esser, Norbert
- Subjects
AB-initio calculations ,CHARGE transfer ,DENSITY functional theory ,REFLECTANCE spectroscopy ,FERMI level ,ATOMIC hydrogen ,NANOWIRES - Abstract
The conductivity of substrate‐supported metallic nanowires can be adjusted, e.g., by strain or adsorbates. In this article, the effect of atomic hydrogen and toluene‐3,4‐dithiol (TDT) adsorption on the quasi‐1D structures of the Si(553)‐(5 × 2)–Au reconstruction is investigated. Reflectance anisotropy spectroscopy (RAS) and infrared ellipsometry reveal optical signatures of the surface. Spectral modifications related to the adsorbate exposure suggest the activation of adsorption‐induced interband transitions. Density functional theory (DFT) calculations reproduce the spectral modifications and explain their origin. Preferential adsorption on sites located at the step edges of the structure occurs independent of the type of adsorbate and induces a charge transfer between electronic states related to the step edges and the Au dimer rows. This charge redistribution modifies the electronic structure close to the Fermi level, enhances the dimerization of the Au chains, and strongly influences the low‐energy region of the RAS spectra. While previous studies employed atomic H as a chief adsorbate, it is shown here that even molecular H deeply modifies the Si(553)–Au optical response. Structural modification of Au–Si(553) by H and TDT adsorbates as suggested from recent ab initio calculations are verified. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
44. Conditional Manipulation of Gene Function in Human Cells with Optimized Inducible shRNA.
- Author
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Bertero A, Yiangou L, Brown S, Ortmann D, Pawlowski M, and Vallier L
- Subjects
- Base Sequence, Cells, Cultured, Clone Cells, DNA, Recombinant, Gene Knockdown Techniques, Genetic Vectors metabolism, Genotype, Humans, Plasmids isolation & purification, Plasmids metabolism, Pluripotent Stem Cells cytology, Genetic Techniques, Pluripotent Stem Cells metabolism, RNA, Small Interfering metabolism
- Abstract
The difficulties involved in conditionally perturbing complex gene expression networks represent major challenges toward defining the mechanisms controlling human development, physiology, and disease. We developed an OPTimized inducible KnockDown (OPTiKD) platform that addresses the limitations of previous approaches by allowing streamlined, tightly-controlled, and potent loss-of-function experiments for both single and multiple genes. The method relies on single-step genetic engineering of the AAVS1 genomic safe harbor with an optimized tetracycline-responsive cassette driving one or more inducible short hairpin RNAs (shRNAs). OPTiKD provides homogeneous, dose-responsive, and reversible gene knockdown. When implemented in human pluripotent stem cells (hPSCs), the approach can be then applied to a broad range of hPSC-derived mature cell lineages that include neurons, cardiomyocytes, and hepatocytes. Generation of OPTiKD hPSCs in commonly used culture conditions is simple (plasmid based), rapid (two weeks), and highly efficient (>95%). Overall, this method facilitates the functional annotation of the human genome in health and disease. © 2018 by John Wiley & Sons, Inc., (Copyright © 2018 John Wiley & Sons, Inc.)
- Published
- 2018
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45. Graft survival of Descemet membrane endothelial keratoplasty (DMEK) in corneal endothelial decompensation after glaucoma surgery.
- Author
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Schrittenlocher, Silvia, Grass, C., Dietlein, T., Lappas, A., Matthaei, M., Cursiefen, C., and Bachmann, B.
- Subjects
DESCEMET membrane endothelial keratoplasty ,CORNEAL transplantation ,TRABECULECTOMY ,GRAFT survival ,SURVIVAL rate ,GLAUCOMA ,CORNEA - Abstract
Purpose: This study aims to assess the results, rebubbling rate, and graft survival after Descemet membrane endothelial keratoplasty (DMEK) with regard to the number and type of previous glaucoma surgeries. Methods: This is a clinical retrospective review of 1845 consecutive DMEK surgeries between 07/2011 and 08/2017 at the Department of Ophthalmology, University of Cologne. Sixty-six eyes were included: group 1 (eyes with previous glaucoma drainage devices (GDD); n = 27) and group 2 (eyes with previous trabeculectomy (TE); n = 39). Endothelial cell loss (ECL), central corneal thickness, graft failure, rebubbling rate, and best spectacle-corrected visual acuity (BSCVA) up to 3 years after DMEK were compared between subgroups of patients with different numbers of and the two most common types of glaucoma surgeries either GDD or TE or both. Results: Re-DMEK rate due to secondary graft failure was 55.6% (15/27) in group 1 and 35.9% in group 2. The mean graft survival time in group 1 was 25 ± 11 months and 31.3 ± 8.6 months in group 2 (p = 0.009). ECL in surviving grafts in group 1 was 35% (n = 13) at 6 months, 36% at 12 months (n = 8), and 27% (n = 4) at 2 years postoperatively. In group 2, ECL in surviving grafts was 41% (n = 10) at 6 months, 36% (n = 9) at 12 months, and 38% (n = 8) at 2 years postoperatively. Rebubbling rate in group 1 was 18.5% (5/27) and 35.9% (14/39) in group 2 (p = 0.079). Conclusion: Eyes with previous GDD had no higher risk for an increased rebubbling rate but a higher risk for a re-DMEK due to secondary graft failure with a mean transplant survival time of about 2 years. Compared to eyes with preexisting glaucoma drainage device, eyes after trabeculectomy had less secondary graft failures and a longer mean graft survival rate. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
46. Specific Attenuation of Purinergic Signaling during Bortezomib-Induced Peripheral Neuropathy In Vitro.
- Author
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Holzer, Anna-Katharina, Suciu, Ilinca, Karreman, Christiaan, Goj, Thomas, and Leist, Marcel
- Subjects
CELL death ,PERIPHERAL neuropathy ,INDUCED pluripotent stem cells ,DORSAL root ganglia ,PROTEASOME inhibitors ,SENSORY neurons - Abstract
Human peripheral neuropathies are poorly understood, and the availability of experimental models limits further research. The PeriTox test uses immature dorsal root ganglia (DRG)-like neurons, derived from induced pluripotent stem cells (iPSC), to assess cell death and neurite damage. Here, we explored the suitability of matured peripheral neuron cultures for the detection of sub-cytotoxic endpoints, such as altered responses of pain-related P2X receptors. A two-step differentiation protocol, involving the transient expression of ectopic neurogenin-1 (NGN1) allowed for the generation of homogeneous cultures of sensory neurons. After >38 days of differentiation, they showed a robust response (Ca
2+ -signaling) to the P2X3 ligand α,β-methylene ATP. The clinical proteasome inhibitor bortezomib abolished the P2X3 signal at ≥5 nM, while 50–200 nM was required in the PeriTox test to identify neurite damage and cell death. A 24 h treatment with low nM concentrations of bortezomib led to moderate increases in resting cell intracellular Ca2+ concentration but signaling through transient receptor potential V1 (TRPV1) receptors or depolarization-triggered Ca2+ influx remained unaffected. We interpreted the specific attenuation of purinergic signaling as a functional cell stress response. A reorganization of tubulin to form dense structures around the cell somata confirmed a mild, non-cytotoxic stress triggered by low concentrations of bortezomib. The proteasome inhibitors carfilzomib, delanzomib, epoxomicin, and MG-132 showed similar stress responses. Thus, the model presented here may be used for the profiling of new proteasome inhibitors in regard to their side effect (neuropathy) potential, or for pharmacological studies on the attenuation of their neurotoxicity. P2X3 signaling proved useful as endpoint to assess potential neurotoxicants in peripheral neurons. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
47. You can't keep a bad idea down: Dark history, death, and potential rebirth of eugenics.
- Author
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Liscum, Mannie and Garcia, Michael L.
- Published
- 2022
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48. Graft detachments in endothelial keratoplasty.
- Author
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Deshmukh, Rashmi, Nair, Sridevi, Ting, Darren Shu Jeng, Agarwal, Tushar, Beltz, Jacqueline, and Vajpayee, Rasik B.
- Abstract
Graft detachment is the most common complication of endothelial keratoplasty. With the ongoing advancements in the field of endothelial keratoplasty, our understanding of risk factors of graft detachments and its management has been evolving. Various prevention measures have been described in literature including presoaking the donor graft, anterior chamber tamponade, venting incisions, sutures to prevent dislocation of graft. Management of a detached graft involves secondary interventions such as rebubbling, suturing and regrafts. In this review, we discuss graft detachment in different types of endothelial keratoplasty techniques including Descemet stripping endothelial keratoplasty, Descemet stripping automated endothelial keratoplasty and Descemet's membrane endothelial keratoplasty; with emphasis on incidence, risk factors, preventive measures and their management. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
49. Impact of Early Intraocular Pressure Elevation on Postoperative Outcomes After Descemet Membrane Endothelial Keratoplasty in Non-glaucoma Patients.
- Author
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Lentzsch, Anna M., Adler, Werner, Siebelmann, Sebastian, Grajewski, Rafael, Schrittenlocher, Silvia, Bachmann, Bjoern O., Cursiefen, Claus, Heindl, Ludwig M., and Matthaei, Mario
- Published
- 2022
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- View/download PDF
50. KLF17 promotes human naïve pluripotency but is not required for its establishment.
- Author
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Lea, Rebecca A., McCarthy, Afshan, Boeing, Stefan, Fallesen, Todd, Elder, Kay, Snell, Phil, Christie, Leila, Adkins, Sarah, Shaikly, Valerie, Taranissi, Mohamed, and Niakan, Kathy K.
- Subjects
HUMAN embryonic stem cells ,GENETIC transcription regulation ,ZINC-finger proteins ,CELLULAR signal transduction ,HUMAN embryos - Abstract
Current knowledge of the transcriptional regulation of human pluripotency is incomplete, with lack of interspecies conservation observed. Single-cell transcriptomics analysis of human embryos previously enabled us to identify transcription factors, including the zinc-finger protein KLF17, that are enriched in the human epiblast and naïve human embryonic stem cells (hESCs). Here, we show that KLF17 is expressed coincident with the known pluripotencyassociated factors NANOG and SOX2 across human blastocyst development. We investigate the function of KLF17 using primed and naïve hESCs for gain- and loss-of-function analyses. We find that ectopic expression of KLF17 in primed hESCs is sufficient to induce a naïve-like transcriptome and that KLF17 can drive transgene-mediated resetting to naïve pluripotency. This implies a role for KLF17 in establishing naïve pluripotency. However, CRISPR-Cas9-mediated knockout studies reveal that KLF17 is not required for naïve pluripotency acquisition in vitro. Transcriptome analysis of naïve hESCs identifies subtle effects onmetabolismand signalling pathways following KLF17 loss of function, and possible redundancy with other KLF paralogues. Overall, we show that KLF17 is sufficient, but not necessary, for naïve pluripotency under the given in vitro conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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