1,217 results on '"Smith MT"'
Search Results
2. Global characteristics of childhood acute promyelocytic leukemia
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Zhang, L, Samad, A, Pombo-de-Oliveira, MS, Scelo, G, Smith, MT, Feusner, J, Wiemels, JL, and Metayer, C
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Rare Diseases ,Pediatric Cancer ,Pediatric ,Cancer ,Childhood Leukemia ,Hematology ,Pediatric Research Initiative ,Child ,Cytogenetics ,Environmental Exposure ,Geography ,Medical ,Humans ,Leukemia ,Promyelocytic ,Acute ,Prognosis ,Risk Factors ,Acute promyelocytic leukemia ,AML-M3 ,Pediatric leukemia ,Therapy-related leukemia ,Environmental exposure ,Risk factors ,Cardiorespiratory Medicine and Haematology ,Clinical Sciences ,Immunology ,Cardiovascular medicine and haematology - Abstract
Acute promyelocytic leukemia (APL) comprises approximately 5-10% of childhood acute myeloid leukemia (AML) cases in the US. While variation in this percentage among other populations was noted previously, global patterns of childhood APL have not been thoroughly characterized. In this comprehensive review of childhood APL, we examined its geographic pattern and the potential contribution of environmental factors to observed variation. In 142 studies (spanning >60 countries) identified, variation was apparent-de novo APL represented from 2% (Switzerland) to >50% (Nicaragua) of childhood AML in different geographic regions. Because a limited number of previous studies addressed specific environmental exposures that potentially underlie childhood APL development, we gathered 28 childhood cases of therapy-related APL, which exemplified associations between prior exposures to chemotherapeutic drugs/radiation and APL diagnosis. Future population-based studies examining childhood APL patterns and the potential association with specific environmental exposures and other risk factors are needed.
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- 2015
3. Prediagnostic transcriptomic markers of Chronic lymphocytic leukemia reveal perturbations 10 years before diagnosis
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Chadeau-Hyam, M, Vermeulen, RCH, Hebels, DGAJ, Castagné, R, Campanella, G, Portengen, L, Kelly, RS, Bergdahl, IA, Melin, B, Hallmans, G, Palli, D, Krogh, V, Tumino, R, Sacerdote, C, Panico, S, de Kok, TMCM, Smith, MT, Kleinjans, JCS, Vineis, P, Kyrtopoulos, SA, consortium, on behalf of the EnviroGenoMarkers project, Georgiadis, P, Botsivali, M, Papadopoulou, C, Chatziioannou, A, Valavanis, I, Gottschalk, R, van Leeuwen, D, Timmermans, L, Keun, HC, Athersuch, TJ, Lenner, P, Bendinelli, B, Stephanou, EG, Myridakis, A, Kogevinas, M, Saberi-Hosnijeh, F, Fazzo, L, de Santis, M, Comba, P, Kiviranta, H, Rantakokko, P, Airaksinen, R, Ruokojarvi, P, Gilthorpe, MS, Fleming, S, Fleming, T, Tu, Y-K, Jonsson, B, Lundh, T, Chien, K-L, Chen, WJ, Lee, W-C, Hsiao, CK, Kuo, P-H, Hung, H, and Liao, S-F
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Genetic Testing ,Lymphoma ,Orphan Drug ,Genetics ,Hematology ,Cancer ,Rare Diseases ,Clinical Research ,2.1 Biological and endogenous factors ,Aetiology ,Adult ,Aged ,Biomarkers ,Tumor ,Case-Control Studies ,Female ,Genome ,Human ,Humans ,Leukemia ,Lymphocytic ,Chronic ,B-Cell ,Male ,Middle Aged ,Models ,Genetic ,Principal Component Analysis ,Prospective Studies ,Transcriptome ,epidemiology ,lymphoma ,chronic lymphocytic leukemia ,mRNA analyses ,prospective cohort ,EnviroGenoMarkers project consortium ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
BackgroundB-cell lymphomas are a diverse group of hematological neoplasms with differential etiology and clinical trajectories. Increased insights in the etiology and the discovery of prediagnostic markers have the potential to improve the clinical course of these neoplasms.MethodsWe investigated in a prospective study global gene expression in peripheral blood mononuclear cells of 263 incident B-cell lymphoma cases, diagnosed between 1 and 17 years after blood sample collection, and 439 controls, nested within two European cohorts.ResultsOur analyses identified only transcriptomic markers for specific lymphoma subtypes; few markers of multiple myeloma (N = 3), and 745 differentially expressed genes in relation to future risk of chronic lymphocytic leukemia (CLL). The strongest of these associations were consistently found in both cohorts and were related to (B-) cell signaling networks and immune system regulation pathways. CLL markers exhibited very high predictive abilities of disease onset even in cases diagnosed more than 10 years after blood collection.ConclusionsThis is the first investigation on blood cell global gene expression and future risk of B-cell lymphomas. We mainly identified genes in relation to future risk of CLL that are involved in biological pathways, which appear to be mechanistically involved in CLL pathogenesis. Many but not all of the top hits we identified have been reported previously in studies based on tumor tissues, therefore suggesting that a mixture of preclinical and early disease markers can be detected several years before CLL clinical diagnosis.
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- 2014
4. Follicular lymphoma-protective HLA class II variants correlate with increased HLA-DQB1 protein expression
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Sillé, FCM, Conde, L, Zhang, J, Akers, NK, Sanchez, S, Maltbaek, J, Riby, JE, Smith, MT, and Skibola, CF
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Cancer ,Rare Diseases ,Human Genome ,Lymphoma ,Genetics ,Biotechnology ,Hematology ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Cells ,Cultured ,Dendritic Cells ,Gene Frequency ,Genetic Predisposition to Disease ,HLA-DQ beta-Chains ,Haplotypes ,Humans ,Linkage Disequilibrium ,Lipopolysaccharides ,Lymphocyte Activation ,Lymphoma ,Follicular ,Polymorphism ,Single Nucleotide ,Quantitative Trait Loci ,follicular lymphoma ,human leukocyte antigen ,gene expression ,protein expression ,Immunology - Abstract
Multiple follicular lymphoma (FL) susceptibility single-nucleotide polymorphisms in the human leukocyte antigen (HLA) class I and II regions have been identified, including rs6457327, rs3117222, rs2647012, rs10484561, rs9268853 and rs2621416. Here we validated previous expression quantitative trait loci results with real-time reverse transcription quantitative PCR and investigated protein expression in B-lymphoblastoid cell lines and primary dendritic cells using flow cytometry, cell-based enzyme-linked immunosorbent assay and western blotting. We confirmed that FL-protective rs2647012-linked variants, in high linkage disequilibrium with the extended haplotype DRB1*15:01-DQA1*01:02-DQB1*06:02, correlate with increased HLA-DQB1 expression. This association remained significant at the protein level and was reproducible across different cell types. We also found that differences in HLA-DQB1 expression were not related to changes in activation markers or class II, major histocompatibility complex, transactivator expression, suggesting the role of an alternative regulatory mechanism. However, functional analysis using RegulomeDB did not reveal any relevant regulatory candidates. Future studies should focus on the clinical relevance of increased HLA-DQB1 protein expression facilitating tumor cell removal through increased immune surveillance.
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- 2014
5. Leukemia-related chromosomal loss detected in hematopoietic progenitor cells of benzene-exposed workers
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Zhang, L, Lan, Q, Ji, Z, Li, G, Shen, M, Vermeulen, R, Guo, W, Hubbard, AE, McHale, CM, Rappaport, SM, Hayes, RB, Linet, MS, Yin, S, Smith, MT, and Rothman, N
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Cancer ,Prevention ,Clinical Trials and Supportive Activities ,Stem Cell Research ,Hematology ,Clinical Research ,Stem Cell Research - Nonembryonic - Non-Human ,2.1 Biological and endogenous factors ,Aetiology ,Adult ,Aneuploidy ,Benzene ,Case-Control Studies ,Chromosome Deletion ,Chromosomes ,Human ,Pair 7 ,Chromosomes ,Human ,Pair 8 ,Colony-Forming Units Assay ,Cross-Sectional Studies ,Female ,Follow-Up Studies ,Humans ,In Situ Hybridization ,Fluorescence ,Leukemia ,Myeloid ,Acute ,Male ,Monosomy ,Occupational Exposure ,Prognosis ,benzene ,monosomy ,hematopoietic progenitor ,Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Cardiovascular medicine and haematology ,Clinical sciences ,Oncology and carcinogenesis - Abstract
Benzene exposure causes acute myeloid leukemia and hematotoxicity, shown as suppression of mature blood and myeloid progenitor cell numbers. As the leukemia-related aneuploidies monosomy 7 and trisomy 8 previously had been detected in the mature peripheral blood cells of exposed workers, we hypothesized that benzene could cause leukemia through the induction of these aneuploidies in hematopoietic stem and progenitor cells. We measured loss and gain of chromosomes 7 and 8 by fluorescence in situ hybridization in interphase colony-forming unit-granulocyte-macrophage (CFU-GM) cells cultured from otherwise healthy benzene-exposed (n=28) and unexposed (n=14) workers. CFU-GM monosomy 7 and 8 levels (but not trisomy) were significantly increased in subjects exposed to benzene overall, compared with levels in the control subjects (P=0.0055 and P=0.0034, respectively). Levels of monosomy 7 and 8 were significantly increased in subjects exposed to
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- 2012
6. Non-Hodgkin's lymphoma, obesity and energy homeostasis polymorphisms
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Willett, EV, Skibola, CF, Adamson, P, Skibola, DR, Morgan, GJ, Smith, MT, and Roman, E
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Oncology and Carcinogenesis ,Rare Diseases ,Prevention ,Lymphoma ,Cancer ,Hematology ,Nutrition ,Genetics ,Obesity ,Genetic Testing ,Clinical Research ,2.1 Biological and endogenous factors ,Aetiology ,Adolescent ,Adult ,Base Sequence ,Case-Control Studies ,DNA Primers ,Energy Metabolism ,Homeostasis ,Humans ,Leptin ,Lymphoma ,Non-Hodgkin ,Middle Aged ,Polymorphism ,Genetic ,Receptors ,Cell Surface ,Receptors ,Leptin ,non-Hodgkin's lymphoma ,body mass index ,SNP ,leptin ,adiponectin ,epidemiology ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
A population-based case-control study of lymphomas in England collected height and weight details from 699 non-Hodgkin's lymphoma (NHL) cases and 914 controls. Obesity, defined as a body mass index (BMI) over 30 kg m(-2) at five years before diagnosis,, was associated with an increased risk of NHL (OR = 1.5, 95% CI 1.1-2.1). The excess was most pronounced for diffuse large B-cell lymphoma (OR = 1.9, 95% CI 1.3-2.8). Genetic variants in the leptin (LEP 19G > A, LEP -2548G > A) and leptin receptor genes (LEPR 223Q > R), previously shown to modulate NHL risk, as well as a polymorphism in the energy regulatory gene adiponectin (APM1 276G>T), were investigated. Findings varied with leptin genotype, the risks being decreased with LEP 19AA (OR = 0.7, 95% CI 0.5-1.0) and increased with LEP -2548GA (OR = 1.3, 95% CI 1.0-1.7) and -2548AA (OR = 1.4, 95% CI 1.0-1.9), particularly for follicular lymphoma. These genetic findings, which were independent of BMI, were stronger for men than women.
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- 2005
7. Biomarkers of leukemia risk: benzene as a model.
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Smith, MT and Zhang, L
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Humans ,Leukemia ,Chromosome Aberrations ,Genetic Predisposition to Disease ,Benzene ,In Situ Hybridization ,Fluorescence ,Risk Factors ,Polymerase Chain Reaction ,Environmental Exposure ,Adult ,Child ,Biomarkers ,genetic susceptibility ,chemical exposure ,molecular epidemiology ,chromosome aberrations ,fluorescence in situ hybridization ,polymerase chain reaction ,children ,In Situ Hybridization ,Fluorescence ,Toxicology ,Environmental Sciences ,Medical and Health Sciences - Abstract
Although relatively rare, leukemias place a considerable financial burden on society and cause psychologic trauma to many families. Leukemia is the most common cancer in children. The causes of leukemia in adults and children are largely unknown, but occupational and environmental factors are strongly suspected. Genetic predisposition may also play a major role. Our aim is to use molecular epidemiology and toxicology to find the cause of leukemia and develop biomarkers of leukemia risk. We have studied benzene as a model chemical leukemogen, and we have identified risk factors for susceptibility to benzene toxicity. Numerous studies have associated exposure to benzene with increased levels of chromosome aberrations in circulating lymphocytes of exposed workers. Increased levels of chromosome aberrations have, in turn, been correlated with a heightened risk of cancer, especially for hematologic malignancy, in two recent cohort studies in Europe. Conventional chromosome analysis is laborious, however, and requires highly trained personnel. Further, it lacks statistical power, as only a small number of cells can be examined. The recently developed fluorescence in situ hybridization (FISH) and polymerase chain reaction (PCR)-based technologies have allowed the detection of specific chromosome aberrations. These techniques are far less time consuming and are more sensitive than classical chromosomal analysis. Because leukemias commonly show a variety of specific chromosome aberrations, detection of these aberrations by FISH and PCR in peripheral blood may provide improved biomarkers of leukemia risk.
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- 1998
8. An epidemiologic study of early biologic effects of benzene in Chinese workers.
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Rothman, N, Smith, MT, Hayes, RB, Li, GL, Irons, RD, Dosemeci, M, Haas, R, Stillman, WS, Linet, M, Xi, LQ, Bechtold, WE, Wiemels, J, Campleman, S, Zhang, L, Quintana, PJ, Titenko-Holland, N, Wang, YZ, Lu, W, Kolachana, P, Meyer, KB, and Yin, S
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Hematology ,Genetics ,Clinical Research ,Adult ,Benzene ,Blood Cell Count ,China ,Chromosome Aberrations ,Cross-Sectional Studies ,Cytokines ,DNA Adducts ,Female ,Glycophorins ,Humans ,Male ,Mutation ,Occupational Diseases ,Occupational Exposure ,Environmental Sciences ,Health Sciences ,benzene ,hydroquinone ,muconic acid ,hematotoxicity ,cytokines ,biomarkers ,molecular epidemiology ,somatic cell mutations ,leukemogenesis ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
Benzene is a recognized hematotoxin and leukemogen, but its mechanisms of action in humans are still uncertain. To provide insight into these processes, we carried out a cross-sectional study of 44 healthy workers currently exposed to benzene (median 8-hr time-weighted average; 31 ppm), and unexposed controls in Shanghai, China. Here we provide an overview of the study results on peripheral blood cells levels and somatic cell mutation frequency measured by the glycophorin A (GPA) gene loss assay and report on peripheral cytokine levels. All peripheral blood cells levels (i.e., total white blood cells, absolute lymphocyte count, platelets, red blood cells, and hemoglobin) were decreased among exposed workers compared to controls, with the exception of the red blood cell mean corpuscular volume, which was higher among exposed subjects. In contrast, peripheral cytokine levels (interleukin-3, interleukin-6, erythropoietin, granulocyte colony-stimulating factor, tissue necrosis factor-alpha) in a subset of the most highly exposed workers (n = 11) were similar to values in controls (n = 11), suggesting that benzene does not affect these growth factor levels in peripheral blood. The GPA assay measures stem cell or precursor erythroid cell mutations expressed in peripheral red blood cells of MN heterozygous subjects, identifying NN variants, which result from loss of the GPA M allele and duplication of the N allele, and N phi variants, which arise from gene inactivation. The NN (but not N phi) GPA variant cell frequency was elevated in the exposed workers compared with controls (mean +/- SD, 13.9 +/- 8.4 mutants per million cells versus 7.4 +/- 5.2 per million cells, (respectively; p = 0.0002), suggesting that benzene produces gene-duplicating but not gene-inactivating mutations at the GPA locus in bone marrow cells of exposed humans. These findings, combined with ongoing analyses of benzene macromolecular adducts and chromosomal aberrations, will provide an opportunity to comprehensively evaluate a wide range of early biologic effects associated with benzene exposure in humans.
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- 1996
9. The mechanism of benzene-induced leukemia: a hypothesis and speculations on the causes of leukemia.
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Smith, MT
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Liver ,Animals ,Humans ,Leukemia ,Aneuploidy ,Translocation ,Genetic ,Benzene ,Phenols ,Carcinogens ,Recombination ,Genetic ,Models ,Biological ,phenol ,hydroquinone ,benzenetriol ,quinones ,free radicals ,oxygen radicals ,chromosome damage ,aneuploidy ,recombination ,topoisomerase ,carcinogenesis ,leukemia ,Models ,Biological ,Recombination ,Genetic ,Translocation ,Toxicology ,Environmental Sciences ,Medical and Health Sciences - Abstract
An overall hypothesis for benzene-induced leukemia is proposed. Key components of the hypothesis include a) activation of benzene in the liver to phenolic metabolites; b) transport of these metabolites to the bone marrow and conversion to semiquinone radicals and quinones via peroxidase enzymes; c) generation of active oxygen species via redox cycling; d) damage to tubulin, histone proteins, topoisomerase II, other DNA associated proteins, and DNA itself; and e) consequent damage including DNA strand breakage, mitotic recombination, chromosome translocations, and aneuploidy. If these effects take place in stem or early progenitor cells a leukemic clone with selective advantage to grow may arise, as a result of protooncogene activation, gene fusion, and suppressor gene inactivation. Epigenetic effects of benzene metabolites on the bone marrow stroma, and perhaps the stem cell itself, may then foster development and survival of the leukemic clone. Evidence for this hypothesis is mounting with the recent demonstration that benzene induces gene-duplicating mutations in human bone marrow and chromosome-specific aneuploidy and translocations in peripheral blood cells. If this hypothesis is correct, it also potentially implicates phenolic and quinonoid compounds in the induction of "spontaneous" leukemia in man.
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- 1996
10. Interphase cytogenetics of workers exposed to benzene.
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Zhang, L, Rothman, N, Wang, Y, Hayes, RB, Bechtold, W, Venkatesh, P, Yin, S, Dosemeci, M, Li, G, Lu, W, and Smith, MT
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Chromosomes ,Human ,Pair 7 ,Chromosomes ,Human ,Pair 9 ,Humans ,Aneuploidy ,Benzene ,Phenols ,Carcinogens ,In Situ Hybridization ,Fluorescence ,Case-Control Studies ,Cytogenetics ,Occupational Exposure ,Interphase ,Adult ,benzene ,aneuploidy ,hyperdiploidy ,chromosome aberrations ,leukemia ,Chromosomes ,Human ,Pair 7 ,Pair 9 ,In Situ Hybridization ,Fluorescence ,Toxicology ,Environmental Sciences ,Medical and Health Sciences - Abstract
Fluorescence in situ hybridization (FISH) is a powerful new technique that allows numerical chromosome aberrations (aneuploidy) to be detected in interphase cells. In previous studies, FISH has been used to demonstrate that the benzene metabolites hydroquinone and 1,2,4-benzenetriol induce aneuploidy of chromosomes 7 and 9 in cultures of human cells. In the present study, we used an interphase FISH procedure to perform cytogenetic analyses on the blood cells of 43 workers exposed to benzene (median = 31 ppm, 8-hr time-weighted average) and 44 matched controls from Shanghai, China. High benzene exposure (> 31 ppm, n = 22) increased the hyperdiploid frequency of chromosome 9 (p < 0.01), but lower exposure (< or = 31 ppm, n = 21) did not. Trisomy 9 was the major form of benzene-induced hyperdiploidy. The level of hyperploidy in exposed workers correlated with their urinary phenol level (r = 0.58, p < 0.0001), a measure of internal benzene dose. A significant correlation was also found between hyperdiploidy and decreased absolute lymphocyte count, an indicator of benzene hematotoxicity, in the exposed group (r = -0.44, p = 0.003) but not in controls (r = -0.09, p = 0.58). These results show that high benzene exposure induces aneuploidy of chromosome 9 in nondiseased individuals, with trisomy being the most prevalent form. They further highlight the usefulness of interphase cytogenetics and FISH for the rapid and sensitive detection of aneuploidy in exposed human populations.
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- 1996
11. Population toxicokinetics of benzene.
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Bois, FY, Jackson, ET, Pekari, K, and Smith, MT
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Biomedical and Clinical Sciences ,Environmental Sciences ,Health Sciences ,Bayes Theorem ,Benzene ,Bone Marrow ,Computer Simulation ,Humans ,Liver ,Male ,Markov Chains ,Models ,Biological ,Tissue Distribution ,benzene ,Gibbs sampling ,human exposure ,metabolism ,toxicokinetics ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
In assessing the distribution and metabolism of toxic compounds in the body, measurements are not always feasible for ethical or technical reasons. Computer modeling offers a reasonable alternative, but the variability and complexity of biological systems pose unique challenges in model building and adjustment. Recent tools from population pharmacokinetics, Bayesian statistical inference, and physiological modeling can be brought together to solve these problems. As an example, we modeled the distribution and metabolism of benzene in humans. We derive statistical distributions for the parameters of a physiological model of benzene, on the basis of existing data. The model adequately fits both prior physiological information and experimental data. An estimate of the relationship between benzene exposure (up to 10 ppm) and fraction metabolized in the bone marrow is obtained and is shown to be linear for the subjects studied. Our median population estimate for the fraction of benzene metabolized, independent of exposure levels, is 52% (90% confidence interval, 47-67%). At levels approaching occupational inhalation exposure (continuous 1 ppm exposure), the estimated quantity metabolized in the bone marrow ranges from 2 to 40 mg/day.
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- 1996
12. Application of molecular biomarkers in epidemiology.
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Smith, MT and Suk, WA
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Epidemiology ,Biomedical and Clinical Sciences ,Health Sciences ,Prevention ,4.1 Discovery and preclinical testing of markers and technologies ,Detection ,screening and diagnosis ,Animals ,Biomarkers ,Biomarkers ,Tumor ,Environmental Monitoring ,Genetic Markers ,Humans ,Models ,Biological ,Environmental Sciences ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
The principal conclusions and opportunities that can be drawn from this conference are as follows. The meeting demonstrated the large communication gap that still exists between most epidemiologists and laboratory scientists. This problem could be overcome if epidemiologists worked closely with laboratory scientists at the outset of any project so that a better understanding could be built between them. Epidemiologists need simple, well-characterized, reproducible assays that can be applied to hundreds or thousands of people. Most laboratory scientists have little interest in running large numbers of assays, but wish to continually refine their methods so that they stay on the "cutting edge" of basic research. This problem could be overcome if the new laboratory technology could be transferred to contract laboratories or small companies. Problems of technology transfer therefore need to be addressed. Current and new biomarkers need to be better validated in the field and by studying animal models. More information on the background expression of biomarkers in the general population is needed (i.e. what is the normal range?). Ethical issues, such as the possibility that biomarkers of susceptibility could be used to exclude people from the workplace, need to be addressed.
- Published
- 1994
13. Use of the glycophorin A human mutation assay to study workers exposed to styrene.
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Compton-Quintana, PJ, Jensen, RH, Bigbee, WL, Grant, SG, Langlois, RG, Smith, MT, and Rappaport, SM
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Biomedical and Clinical Sciences ,Evaluation Studies as Topic ,Gene Frequency ,Genetic Variation ,Glycophorins ,Humans ,Mutagenicity Tests ,Occupational Exposure ,Styrene ,Styrenes ,Environmental Sciences ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
The glycophorin A (GPA) assay is a human mutation assay that is potentially useful for large epidemiological studies. The assay is rapid and requires a minimal amount of blood, which can be stored before analysis. The data presented here were collected from workers exposed to styrene in a boat manufacturing plant. This study was the first to apply the GPA assay to an occupationally exposed population. Subjects with a mean styrene exposure of 30 ppm had a higher frequency of GPA N phi variant cells than subjects with mean exposure of 1 ppm, but the subjects differed in respect to smoking and age distribution. Results indicate that the original 1-W-1 version of the assay may not be suitable for studies of small numbers of exposed subjects due to variability and artifacts. The newer BR6 version, however, has much lower variability and shows promise for use in the occupational setting.
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- 1993
14. Cancer risks from arsenic in drinking water.
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Smith, AH, Hopenhayn-Rich, C, Bates, MN, Goeden, HM, Hertz-Picciotto, I, Duggan, HM, Wood, R, Kosnett, MJ, and Smith, MT
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Environmental Sciences ,Pollution and Contamination ,Cancer ,Lung ,Prevention ,Foodborne Illness ,Lung Cancer ,Clean Water and Sanitation ,Animals ,Arsenic ,Case-Control Studies ,Dose-Response Relationship ,Drug ,Female ,Humans ,Kidney Neoplasms ,Liver Neoplasms ,Lung Neoplasms ,Male ,Maximum Allowable Concentration ,Mice ,Neoplasms ,Rats ,Rats ,Wistar ,Taiwan ,United States ,United States Environmental Protection Agency ,Urinary Bladder Neoplasms ,Water Pollutants ,Water Supply ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
Ingestion of arsenic, both from water supplies and medicinal preparations, is known to cause skin cancer. The evidence assessed here indicates that arsenic can also cause liver, lung, kidney, and bladder cancer and that the population cancer risks due to arsenic in U.S. water supplies may be comparable to those from environmental tobacco smoke and radon in homes. Large population studies in an area of Taiwan with high arsenic levels in well water (170-800 micrograms/L) were used to establish dose-response relationships between cancer risks and the concentration of inorganic arsenic naturally present in water supplies. It was estimated that at the current EPA standard of 50 micrograms/L, the lifetime risk of dying from cancer of the liver, lung, kidney, or bladder from drinking 1 L/day of water could be as high as 13 per 1000 persons. It has been estimated that more than 350,000 people in the United States may be supplied with water containing more than 50 micrograms/L arsenic, and more than 2.5 million people may be supplied with water with levels above 25 micrograms/L. For average arsenic levels and water consumption patterns in the United States, the risk estimate was around 1/1000. Although further research is needed to validate these findings, measures to reduce arsenic levels in water supplies should be considered.
- Published
- 1992
15. Human somatic mutation assays as biomarkers of carcinogenesis.
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Compton, PJ, Hooper, K, and Smith, MT
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Biomedical and Clinical Sciences ,Human Genome ,Rare Diseases ,Hematology ,Cancer ,Genetics ,Sickle Cell Disease ,Biomarkers ,Biomarkers ,Tumor ,DNA ,Neoplasm ,Epidemiologic Methods ,Genetic Markers ,Glycophorins ,HLA-A Antigens ,Hemoglobin ,Sickle ,Humans ,Hypoxanthine Phosphoribosyltransferase ,Mutagenicity Tests ,Mutation ,Neoplasms ,Environmental Sciences ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
This paper describes four assays that detect somatic gene mutations in humans: the hypoxanthine-guanine phosphoribosyl transferase assay, the glycophorin A assay, the HLA-A assay, and the sickle cell hemoglobin assay. Somatic gene mutation can be considered a biomarker of carcinogenesis, and assays for somatic mutation may assist epidemiologists in studies that attempt to identify factors associated with increased risks of cancer. Practical aspects of the use of these assays are discussed.
- Published
- 1991
16. 311 Follow-up assessment of anaemia prevalence in children living in the indian himalayas
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Chang, A, Gao, T, Laguë, S, Moor-Smith, MT, Shankar, R, Suri, KR, and Kapoor, V
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- 2018
- Full Text
- View/download PDF
17. 289 Using community engagement based strategies to address dental disease in a rural himalayan boarding school
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Suri, KR, Moor-Smith, MT, Aleksejuniene, J, and Kapoor, V
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- 2018
- Full Text
- View/download PDF
18. 101 Creatively addressing health education in spiti valley, india
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Moor-Smith, MT, Chang, A, and Kapoor, V
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- 2018
- Full Text
- View/download PDF
19. Molecular characterization of genomic AML1-ETO fusions in childhood leukemia
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Xiao, Z, Greaves, MF, Buffler, P, Smith, MT, Segal, MR, Dicks, BM, Wiencke, JK, and Wiemels, JL
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- 2001
- Full Text
- View/download PDF
20. Hypothesis: Phenol and hydroquinone derived mainly from diet and gastrointestinal flora activity are causal factors in leukemia
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McDonald, TA, Holland, NT, Skibola, C, Duramad, P, and Smith, MT
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- 2001
- Full Text
- View/download PDF
21. Pharmacogenetics of pain and analgesia
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Smith, MT and Muralidharan, A
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- 2012
- Full Text
- View/download PDF
22. Peroxidase-dependent metabolism of benzene's phenolic metabolites and its potential role in benzene toxicity and carcinogenicity.
- Author
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Smith, MT, Yager, JW, Steinmetz, KL, and Eastmond, DA
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Medical Biochemistry and Metabolomics ,Biomedical and Clinical Sciences ,Animals ,Benzene ,Bone Marrow Diseases ,Carcinogens ,Humans ,Peroxidase ,Phenols ,Environmental Sciences ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Abstract
The metabolism of two of benzene's phenolic metabolites, phenol and hydroquinone, by peroxidase enzymes has been studied in detail. Studies employing horseradish peroxidase and human myeloperoxidase have shown that in the presence of hydrogen peroxide phenol is converted to 4,4'-diphenoquinone and other covalent binding metabolites, whereas hydroquinone is converted solely to 1,4-benzoquinone. Surprisingly, phenol stimulates the latter conversion rather than inhibiting it, an effect that may play a role in the in vivo myelotoxicity of benzene. Indeed, repeated coadministration of phenol and hydroquinone to B6C3F1 mice results in a dramatic and significant decrease in bone marrow cellularity similar to that observed following benzene exposure. A mechanism of benzene-induced myelotoxicity is therefore proposed in which the accumulation and interaction of phenol and hydroquinone in the bone marrow and the peroxidase-dependent formation of 1,4-benzoquinone are important components. This mechanism may also be responsible, at least in part, for benzene's genotoxic effects, as 1,4-benzoquinone has been shown to damage DNA and is shown here to induce multiple micronuclei in human lymphocytes. Secondary activation of benzene's phenol metabolites in the bone marrow may therefore play an important role in benzene's myelotoxic and carcinogenic effects.
- Published
- 1989
23. Morphine hyposensitivity in streptozotocin-diabetic rats: Reversal by dietary l-arginine treatment
- Author
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Lotfipour, S and Smith, MT
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mechanical allodynia morphine ,endocrine system diseases ,Physiology ,Medical Physiology ,Nitric Oxide ,Arginine ,Autoimmune Disease ,STZ-diabetic rats ,Experimental ,prevention protocol ,painful diabetic neuropathy ,Diabetes Mellitus ,Animals ,l-arginine ,Peripheral Neuropathy ,Metabolic and endocrine ,Nutrition ,intervention protocol ,Morphine ,Diabetes ,Pain Research ,Neurosciences ,nutritional and metabolic diseases ,Pharmacology and Pharmaceutical Sciences ,Rats ,Diet ,Hyperalgesia ,5.1 Pharmaceuticals ,Chronic Pain ,Development of treatments and therapeutic interventions ,morphine hyposensitivity - Abstract
Painful diabetic neuropathy (PDN) is a long-term complication of diabetes. Defining symptoms include mechanical allodynia (pain due to light pressure or touch) and morphine hyposensitivity. In our previous work using the streptozotocin (STZ)-diabetic rat model of PDN, morphine hyposensitivity developed in a temporal manner with efficacy abolished at 3months post-STZ and maintained for 6months post-STZ. As this time course mimicked that for the temporal development of hyposensitivity to the pain-relieving effects of the furoxan nitric oxide (NO) donor, PRG150 (3-methylfuroxan-4-carbaldehyde) in STZ-diabetic rats, we hypothesized that progressive depletion of endogenous NO bioactivity may underpin the temporal loss of morphine sensitivity in STZ-diabetic rats. Furthermore, we hypothesized that replenishment of NO bioactivity may restore morphine sensitivity in these animals. Diabetes was induced in male Dark Agouti rats by intravenous injection of STZ (85mg/kg). Diabetes was confirmed on day 7 if blood glucose concentrations were ≥15mmol/L. Mechanical allodynia was fully developed in the bilateral hindpaws by 3weeks of STZ-diabetes in rats and this was maintained for the study duration. Morphine hyposensitivity developed in a temporal manner with efficacy abolished by 3months post-STZ. Administration of dietary l-arginine (NO precursor) at 1g/d to STZ-diabetic rats according to a 15-week prevention protocol initiated at 9weeks post-STZ prevented abolition of morphine efficacy. When given as an 8-week intervention protocol in rats where morphine efficacy was abolished, dietary l-arginine at 1g/d progressively rescued morphine efficacy and potency. Our findings implicate NO depletion in the development of morphine hyposensitivity in STZ-diabetic rats.
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- 2018
24. A comparison of oesophageal cancer between the public and private sectors in KwaZulu-Natal
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Lutakwa, A, primary, Loots, E, additional, Smith, MT, additional, and Clarke, DL, additional
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- 2019
- Full Text
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25. Performance in Omics Analyses of Blood Samples in Long-Term Storage: Opportunities for the Exploitation of Existing Biobanks in Environmental Health Research
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Hebels DG, Georgiadis P, Keun HC, Athersuch TJ, Vineis P, Vermeulen R, Portengen L, Bergdahl IA, Hallmans G, Palli D, Bendinelli B, Krogh V, Tumino R, Sacerdote C, Kleinjans JC, de Kok TM, Smith MT, Kyrtopoulos SA, EnviroGenomarkers Project Consortium, PANICO, SALVATORE, Toxicogenomics, RS: GROW - School for Oncology and Reproduction, Medical Research Council (MRC), Hebels, Dg, Georgiadis, P, Keun, Hc, Athersuch, Tj, Vineis, P, Vermeulen, R, Portengen, L, Bergdahl, Ia, Hallmans, G, Palli, D, Bendinelli, B, Krogh, V, Tumino, R, Sacerdote, C, Panico, Salvatore, Kleinjans, Jc, de Kok, Tm, Smith, Mt, Kyrtopoulos, Sa, and EnviroGenomarkers Project, Consortium
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Time Factors ,EnviroGenomarkers Project Consortium ,Health, Toxicology and Mutagenesis ,05 Environmental Sciences ,Buffy coat ,Proteomics ,Toxicology ,molecular epidemiology ,SERUM ,transcriptomics ,0302 clinical medicine ,URINE ,TOOL ,Food science ,Public, Environmental & Occupational Health ,Biological Specimen Banks ,0303 health sciences ,Genomics ,11 Medical And Health Sciences ,ENVIRONMENTAL SCIENCES ,Biobank ,metabolomics ,030220 oncology & carcinogenesis ,Life Sciences & Biomedicine ,Environmental Health ,Blood fractionation ,Environmental Sciences & Ecology ,Biology ,Specimen Handling ,03 medical and health sciences ,Metabolomics ,proteomics ,Humans ,metabonomics ,030304 developmental biology ,Science & Technology ,business.industry ,Research ,Gene Expression Profiling ,Public Health, Environmental and Occupational Health ,Anticoagulants ,biomarkers ,Blood collection ,Omics ,Biotechnology ,13. Climate action ,PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH, SCI ,epigenomics ,RNA ,business - Abstract
Background: The suitability for omic analysis of biosamples collected in previous decades and currently stored in biobanks is unknown. Objectives: We evaluated the influence of handling and storage conditions of blood-derived biosamples on transcriptomic, epigenomic (CpG methylation), plasma metabolomic [UPLC-ToFMS (ultra performance liquid chromatography–time-of-flight mass spectrometry)], and wide-target proteomic profiles. Methods: We collected fresh blood samples without RNA preservative in heparin, EDTA, or citrate and held them at room temperature for ≤ 24 hr before fractionating them into buffy coat, erythrocytes, and plasma and freezing the fractions at –80oC or in liquid nitrogen. We developed methodology for isolating RNA from the buffy coats and conducted omic analyses. Finally, we analyzed analogous samples from the EPIC-Italy and Northern Sweden Health and Disease Study biobanks. Results: Microarray-quality RNA could be isolated from buffy coats (including most biobank samples) that had been frozen within 8 hr of blood collection by thawing the samples in RNA preservative. Different anticoagulants influenced the metabolomic, proteomic, and to a lesser extent transcriptomic profiles. Transcriptomic profiles were most affected by the delay (as little as 2 hr) before blood fractionation, whereas storage temperature had minimal impact. Effects on metabolomic and proteomic profiles were noted in samples processed ≥ 8 hr after collection, but no effects were due to storage temperature. None of the variables examined significantly influenced the epigenomic profiles. No systematic influence of time-in-storage was observed in samples stored over a period of 13–17 years. Conclusions: Most samples currently stored in biobanks are amenable to meaningful omics analysis, provided that they satisfy collection and storage criteria defined in this study.
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- 2013
26. Validating Eaton's Hypothesis: Cubane as a Benzene Bioisostere (vol 55, pg 3580, 2016)
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Chalmers, BA, Xing, H, Houston, S, Clark, C, Ghassabian, S, Kuo, A, Cao, B, Reitsma, A, Murray, C-EP, Stok, JE, Boyle, GM, Pierce, CJ, Littler, SW, Winkler, DA, Bernhardt, PV, Pasay, C, De Voss, JJ, McCarthy, J, Parsons, PG, Walter, GH, Smith, MT, Cooper, HM, Nilsson, SK, Tsanaktsidis, J, Savage, GP, Williams, CM, Chalmers, BA, Xing, H, Houston, S, Clark, C, Ghassabian, S, Kuo, A, Cao, B, Reitsma, A, Murray, C-EP, Stok, JE, Boyle, GM, Pierce, CJ, Littler, SW, Winkler, DA, Bernhardt, PV, Pasay, C, De Voss, JJ, McCarthy, J, Parsons, PG, Walter, GH, Smith, MT, Cooper, HM, Nilsson, SK, Tsanaktsidis, J, Savage, GP, and Williams, CM
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- 2018
27. Heat stress incident prevalence and tennis matchplay performance at the Australian Open
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Smith, MT, Reid, M, Kovalchik, S, Woods, TO, Duffield, R, Smith, MT, Reid, M, Kovalchik, S, Woods, TO, and Duffield, R
- Abstract
© 2017 Sports Medicine Australia Objectives: To examine the association of wet bulb globe temperature (WBGT) with the occurrence of heat-related incidents and changes in behavioural and matchplay characteristics in men's Grand Slam tennis. Design: On-court calls for trainers, doctors, cooling devices and water, post-match medical consults and matchplay characteristic data were collected from 360 Australian Open matches (first 4 rounds 2014–2016). Methods: Data were referenced against estimated WBGT and categorised into standard zones. Generalised linear models assessed the association of WBGT zone on heat-related medical incidences and matchplay variables. Results: On-court calls for doctor (47% increase per zone, p = 0.001), heat-related events (41%, p = 0.019), cooling devices (53%, p < 0.001), and post-match heat-related consults (87%, p = 0.014) increased with each rise in estimated WBGT zone. In WBGT's >32 °C and >28 °C, significant increases in heat-related calls (p = 0.019) and calls for cooling devices (p < 0.001), respectively, were evident. The number of winners (−2.5 ± 0.006% per zone, p < 0.001) and net approaches (−7.1 ± 0.008%, p < 0.001) reduced as the estimated WBGT zone increased, while return points won increased (1.75 ± 0.46, p < 0.001). When matches were adjusted for player quality of the opponent (Elo rating), the number of aces (5 ± 0.02%, p = 0.003) increased with estimated WBGT zone, whilst net approaches decreased (7.6 ± 0.013%, p < 0.001). Conclusions: Increased estimated WBGT increased total match doctor and trainer consults for heat related-incidents, post-match heat-related consults (>32 °C) and cooling device callouts (>28 °C). However, few matchplay characteristics were noticeably affected, with only reduced net approaches and increased aces evident in higher estimated WBGT environments.
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- 2018
28. Heat stress incidence and matchplay characteristics in Women's Grand Slam Tennis
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Smith, MT, Reid, M, Kovalchik, S, Wood, T, Duffield, R, Smith, MT, Reid, M, Kovalchik, S, Wood, T, and Duffield, R
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© 2018 Sports Medicine Australia Objectives: To explore the relationship of wet bulb globe temperature (WBGT) on heat-related incidents and alterations in matchplay and behavioural characteristics in women's tennis at the Australian Open. Design: From 360 main draw Australian Open women's matches (2014-2016), data describing on-court calls for trainers, doctors, cooling devices and water, post match medical consults and matchplay characteristics were collated. Methods: Data were referenced against estimated WBGT and categorised into standard zones (zone 5: >32.3 °C, zone 4: 30.1–32.2 °C, zone 3: 27.9–30 °C, zone 2: 22.3–27.9 °C, zone 1: <22.2 °C). Generalized linear models assessed the association of WBGT zone on heat-related medical incidences, court call-outs and match characteristics. Results: With an increased estimated WBGT zone, there was an increase in total trainer calls (+19.5%/zone; p = 0.019), total doctor calls (+54.1%; p < 0.001), total calls for heat related incidents (+55.9%; p < 0.001), and cooling devices (+31.4%; p < 0.001) calculated from the regression slope. When match characteristics were adjusted for match quality, significant decreases (p < 0.001) in the number of winners and net approaches and increase in double faults were associated with increased estimated WBGT zone. Conclusions: An association between higher estimated WBGT and medical callouts (heat and non-heat related) was evident, with an increased call rate >32 °C WBGT, despite no heat-related retirements. As estimated WBGT increased, the number of winners and net approaches were reduced, while double faults increased, particularly >30 °C WBGT. Accordingly, the manner in which female players manage and play in the heat during women's Grand Slam tennis appears to change at ≈30 °C WBGT.
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- 2018
29. Lupus-related single nucleotide polymorphisms and risk of diffuse large B-cell lymphoma
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Bernatsky, S, Garcia, HAV, Spinelli, JJ, Gaffney, P, Smedby, KE, Ramsey-Goldman, R, Wang, SS, Adami, H-O, Albanes, D, Angelucci, E, Ansell, SM, Asmann, YW, Becker, N, Benavente, Y, Berndt, SI, Bertrand, KA, Birmann, BM, Boeing, H, Boffetta, P, Bracci, PM, Brennan, P, Brooks-Wilson, AR, Cerhan, JR, Chanock, SJ, Clavel, J, Conde, L, Cotenbader, KH, Cox, DG, Cozen, W, Crouch, S, De Roos, AJ, de Sanjose, S, Di Lollo, S, Diver, WR, Dogan, A, Foretova, L, Ghesquieres, H, Giles, GG, Glimelius, B, Habermann, TM, Haioun, C, Hartge, P, Hjalgrim, H, Holford, TR, Holly, EA, Jackson, RD, Kaaks, R, Kane, E, Kelly, RS, Klein, RJ, Kraft, P, Kricker, A, Lan, Q, Lawrence, C, Liebow, M, Lightfoot, T, Link, BK, Maynadie, M, Mckay, J, Melbye, M, Molina, TJ, Monnereau, A, Morton, LM, Nieters, A, North, KE, Novak, AJ, Offit, K, Purdue, MP, Rais, M, Riby, J, Roman, E, Rothman, N, Salles, G, Severi, G, Severson, RK, Skibola, CF, Slager, SL, Smith, A, Smith, MT, Southey, MC, Staines, A, Teras, LR, Thompson, CA, Tilly, H, Tinker, LF, Tjonneland, A, Turner, J, Vajdic, CM, Vermeulen, RCH, Vijai, J, Vineis, P, Virtamo, J, Wang, Z, Weinstein, S, Witzig, TE, Zelenetz, A, Zeleniuch-Jacquotte, A, Zhang, Y, Zheng, T, Zucca, M, Clarke, AE, Bernatsky, S, Garcia, HAV, Spinelli, JJ, Gaffney, P, Smedby, KE, Ramsey-Goldman, R, Wang, SS, Adami, H-O, Albanes, D, Angelucci, E, Ansell, SM, Asmann, YW, Becker, N, Benavente, Y, Berndt, SI, Bertrand, KA, Birmann, BM, Boeing, H, Boffetta, P, Bracci, PM, Brennan, P, Brooks-Wilson, AR, Cerhan, JR, Chanock, SJ, Clavel, J, Conde, L, Cotenbader, KH, Cox, DG, Cozen, W, Crouch, S, De Roos, AJ, de Sanjose, S, Di Lollo, S, Diver, WR, Dogan, A, Foretova, L, Ghesquieres, H, Giles, GG, Glimelius, B, Habermann, TM, Haioun, C, Hartge, P, Hjalgrim, H, Holford, TR, Holly, EA, Jackson, RD, Kaaks, R, Kane, E, Kelly, RS, Klein, RJ, Kraft, P, Kricker, A, Lan, Q, Lawrence, C, Liebow, M, Lightfoot, T, Link, BK, Maynadie, M, Mckay, J, Melbye, M, Molina, TJ, Monnereau, A, Morton, LM, Nieters, A, North, KE, Novak, AJ, Offit, K, Purdue, MP, Rais, M, Riby, J, Roman, E, Rothman, N, Salles, G, Severi, G, Severson, RK, Skibola, CF, Slager, SL, Smith, A, Smith, MT, Southey, MC, Staines, A, Teras, LR, Thompson, CA, Tilly, H, Tinker, LF, Tjonneland, A, Turner, J, Vajdic, CM, Vermeulen, RCH, Vijai, J, Vineis, P, Virtamo, J, Wang, Z, Weinstein, S, Witzig, TE, Zelenetz, A, Zeleniuch-Jacquotte, A, Zhang, Y, Zheng, T, Zucca, M, and Clarke, AE
- Abstract
OBJECTIVE: Determinants of the increased risk of diffuse large B-cell lymphoma (DLBCL) in SLE are unclear. Using data from a recent lymphoma genome-wide association study (GWAS), we assessed whether certain lupus-related single nucleotide polymorphisms (SNPs) were also associated with DLBCL. METHODS: GWAS data on European Caucasians from the International Lymphoma Epidemiology Consortium (InterLymph) provided a total of 3857 DLBCL cases and 7666 general-population controls. Data were pooled in a random-effects meta-analysis. RESULTS: Among the 28 SLE-related SNPs investigated, the two most convincingly associated with risk of DLBCL included the CD40 SLE risk allele rs4810485 on chromosome 20q13 (OR per risk allele=1.09, 95% CI 1.02 to 1.16, p=0.0134), and the HLA SLE risk allele rs1270942 on chromosome 6p21.33 (OR per risk allele=1.17, 95% CI 1.01 to 1.36, p=0.0362). Of additional possible interest were rs2205960 and rs12537284. The rs2205960 SNP, related to a cytokine of the tumour necrosis factor superfamily TNFSF4, was associated with an OR per risk allele of 1.07, 95% CI 1.00 to 1.16, p=0.0549. The OR for the rs12537284 (chromosome 7q32, IRF5 gene) risk allele was 1.08, 95% CI 0.99 to 1.18, p=0.0765. CONCLUSIONS: These data suggest several plausible genetic links between DLBCL and SLE.
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- 2017
30. 0408 GRAY MATTER VOLUME REDUCTIONS IN THE THALAMUS AND NUCLEUS ACCUMBENS FOLLOWING ACUTE SLEEP CONTINUITY DISRUPTION
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Whitman, C, primary, Remeniuk, B, additional, Pressman, A, additional, Irwin, MR, additional, Smith, MT, additional, Seminowicz, DA, additional, and Finan, PH, additional
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- 2017
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31. 1071 AMOUNT OF SLOW WAVE SLEEP IS ASSOCIATED WITH THE DISCREPANCIES BETWEEN OBJECTIVE AND SUBJECTIVE SLEEP MEASURES
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Lerman, SF, primary, Buenaver, LF, additional, Finan, PH, additional, Medak, M, additional, Amani, T, additional, Tennen, HA, additional, Haythornthwaite, JA, additional, and Smith, MT, additional
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- 2017
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32. Socio-demographic and structural barriers to being tested for chlamydia in general practice
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Lau, A, Spark, S, Tomnay, J, Smith, MT, Fairley, CK, Guy, RJ, Donovan, B, Hocking, JS, Lau, A, Spark, S, Tomnay, J, Smith, MT, Fairley, CK, Guy, RJ, Donovan, B, and Hocking, JS
- Abstract
Objectives: To investigate socio-demographic and structural factors associated with not providing a specimen for chlamydia testing following Andrew Lau MSc1 Simone Spark BSc(Hons), MPH, PhD2 Jane Tomnay PhD, MHSc, RN3 Meredith T Smith BSc, MPH, DHSc4 Christopher K Fairley PhD, FAFPHM, MB BS5 a request by a general practitioner. Design, setting and participants: cross-sectional analysis of chlamydia testing data for men and women aged 16e29 years attending general practice clinics participating in a cluster randomised controlled trial evaluating the effectiveness of a chlamydia testing intervention. The study period was the 2013 calendar year. Outcome: The proportion of chlamydia test requests for which the patient did not provide a specimen for testing. Results: During the study period, there were 13 225 chlamydia test requests, for which a chlamydia test was not performed in 2545 instances (19.2%; 95% CI, 16.5e22.3%). Multivariate analysis indicated that the odds for not undertaking a requested test were higher for men (adjusted odds ratio [aOR], 1.4; 95% CI, 1.3e1.6), those aged 16e19 years (aOR, 1.3; 95% CI, 1.1e1.4), those living in areas of greater socio-economic disadvantage (aOR, 1.2; 95% CI, 1.1e1.4 for each additional quintile of Index of Relative Socio-economic Disadvantage), and those attending clinics without on-site pathology collection (aOR, 1.4; 95% CI, 1.0e1.9). Conclusion: One in five young people did not submit a specimen for chlamydia testing despite their GP requesting it. This highlights the need for clinics to establish systems which ensure that men and those aged 16e19 years undertake chlamydia tests requested by a GP.
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- 2016
33. Validating Eaton's Hypothesis: Cubane as a Benzene Bioisostere
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Chalmers, BA, Xing, H, Houston, S, Clark, C, Ghassabian, S, Kuo, A, Cao, B, Reitsma, A, Murray, C-EP, Stok, JE, Boyle, GM, Pierce, CJ, Littler, SW, Winkler, DA, Bernhardt, PV, Pasay, C, De Voss, JJ, McCarthy, J, Parsons, PG, Walter, GH, Smith, MT, Cooper, HM, Nilsson, SK, Tsanaktsidis, J, Savage, GP, Williams, CM, Chalmers, BA, Xing, H, Houston, S, Clark, C, Ghassabian, S, Kuo, A, Cao, B, Reitsma, A, Murray, C-EP, Stok, JE, Boyle, GM, Pierce, CJ, Littler, SW, Winkler, DA, Bernhardt, PV, Pasay, C, De Voss, JJ, McCarthy, J, Parsons, PG, Walter, GH, Smith, MT, Cooper, HM, Nilsson, SK, Tsanaktsidis, J, Savage, GP, and Williams, CM
- Abstract
Pharmaceutical and agrochemical discovery programs are under considerable pressure to meet increasing global demand and thus require constant innovation. Classical hydrocarbon scaffolds have long assisted in bringing new molecules to the market place, but an obvious omission is that of the Platonic solid cubane. Eaton, however, suggested that this molecule has the potential to act as a benzene bioisostere. Herein, we report the validation of Eaton's hypothesis with cubane derivatives of five molecules that are used clinically or as agrochemicals. Two cubane analogues showed increased bioactivity compared to their benzene counterparts whereas two further analogues displayed equal bioactivity, and the fifth one demonstrated only partial efficacy. Ramifications from this study are best realized by reflecting on the number of bioactive molecules that contain a benzene ring. Substitution with the cubane scaffold where possible could revitalize these systems, and thus expedite much needed lead candidate identification.
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- 2016
34. Fungal Planet description sheets: 400-468
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Crous, PW, Wingfield, MJ, Richardson, DM, Le Roux, JJ, Strasberg, D, Edwards, J, Roets, F, Hubka, V, Taylor, PWJ, Heykoop, M, Martin, MP, Moreno, G, Sutton, DA, Wiederhold, NP, Barnes, CW, Carlavilla, JR, Gene, J, Giraldo, A, Guarnaccia, V, Guarro, J, Hernandez-Restrepo, M, Kolarik, M, Manjon, JL, Pascoe, IG, Popov, ES, Sandoval-Denis, M, Woudenberg, JHC, Acharya, K, Alexandrova, AV, Alvarado, P, Barbosa, RN, Baseia, IG, Blanchette, RA, Boekhout, T, Burgess, TI, Cano-Lira, JF, Cmokova, A, Dimitrov, RA, Dyakov, MY, Duenas, M, Dutta, AK, Esteve-Raventos, F, Fedosova, AG, Fournier, J, Gamboa, P, Gouliamova, DE, Grebenc, T, Groenewald, M, Hanse, B, Hardy, GESJ, Held, BW, Jurjevic, Z, Kaewgrajang, T, Latha, KPD, Lombard, L, Luangsa-ard, JJ, Lyskova, P, Mallatova, N, Manimohan, P, Miller, AN, Mirabolfathy, M, Morozova, OV, Obodai, M, Oliveira, NT, Ordonez, ME, Otto, EC, Paloi, S, Peterson, SW, Phosri, C, Roux, J, Salazar, WA, Sanchez, A, Sarria, GA, Shin, H-D, Silva, BDB, Silva, GA, Smith, MT, Souza-Motta, CM, Stchigel, AM, Stoilova-Disheva, MM, Sulzbacher, MA, Telleria, MT, Toapanta, C, Traba, JM, Valenzuela-Lopez, N, Watling, R, Groenewald, JZ, Crous, PW, Wingfield, MJ, Richardson, DM, Le Roux, JJ, Strasberg, D, Edwards, J, Roets, F, Hubka, V, Taylor, PWJ, Heykoop, M, Martin, MP, Moreno, G, Sutton, DA, Wiederhold, NP, Barnes, CW, Carlavilla, JR, Gene, J, Giraldo, A, Guarnaccia, V, Guarro, J, Hernandez-Restrepo, M, Kolarik, M, Manjon, JL, Pascoe, IG, Popov, ES, Sandoval-Denis, M, Woudenberg, JHC, Acharya, K, Alexandrova, AV, Alvarado, P, Barbosa, RN, Baseia, IG, Blanchette, RA, Boekhout, T, Burgess, TI, Cano-Lira, JF, Cmokova, A, Dimitrov, RA, Dyakov, MY, Duenas, M, Dutta, AK, Esteve-Raventos, F, Fedosova, AG, Fournier, J, Gamboa, P, Gouliamova, DE, Grebenc, T, Groenewald, M, Hanse, B, Hardy, GESJ, Held, BW, Jurjevic, Z, Kaewgrajang, T, Latha, KPD, Lombard, L, Luangsa-ard, JJ, Lyskova, P, Mallatova, N, Manimohan, P, Miller, AN, Mirabolfathy, M, Morozova, OV, Obodai, M, Oliveira, NT, Ordonez, ME, Otto, EC, Paloi, S, Peterson, SW, Phosri, C, Roux, J, Salazar, WA, Sanchez, A, Sarria, GA, Shin, H-D, Silva, BDB, Silva, GA, Smith, MT, Souza-Motta, CM, Stchigel, AM, Stoilova-Disheva, MM, Sulzbacher, MA, Telleria, MT, Toapanta, C, Traba, JM, Valenzuela-Lopez, N, Watling, R, and Groenewald, JZ
- Abstract
Novel species of fungi described in the present study include the following from Australia: Vermiculariopsiella eucalypti, Mulderomyces natalis (incl. Mulderomyces gen. nov.), Fusicladium paraamoenum, Neotrimmatostroma paraexcentricum, and Pseudophloeospora eucalyptorum on leaves of Eucalyptus spp., Anungitea grevilleae (on leaves of Grevillea sp.), Pyrenochaeta acaciae (on leaves of Acacia sp.), and Brunneocarpos banksiae (incl. Brunneocarpos gen. nov.) on cones of Banksia attenuata. Novel foliicolous taxa from South Africa include Neosulcatispora strelitziae (on Strelitzia nicolai), Colletotrichum ledebouriae (on Ledebouria floridunda), Cylindrosympodioides brabejum (incl. Cylindrosympodioides gen. nov.) on Brabejum stellatifolium, Sclerostagonospora ericae (on Erica sp.), Setophoma cyperi (on Cyperus sphaerocephala), and Phaeosphaeria breonadiae (on Breonadia microcephala). Novelties described from Robben Island (South Africa) include Wojnowiciella cissampeli and Diaporthe cissampeli (both on Cissampelos capensis), Phaeotheca salicorniae (on Salicornia meyeriana), Paracylindrocarpon aloicola (incl. Paracylindrocarpon gen. nov.) on Aloe sp., and Libertasomyces myopori (incl. Libertasomyces gen. nov.) on Myoporum serratum. Several novelties are recorded from La Réunion (France), namely Phaeosphaeriopsis agapanthi (on Agapanthus sp.), Roussoella solani (on Solanum mauritianum), Vermiculariopsiella acaciae (on Acacia heterophylla), Dothiorella acacicola (on Acacia mearnsii), Chalara clidemiae (on Clidemia hirta), Cytospora tibouchinae (on Tibouchina semidecandra), Diaporthe ocoteae (on Ocotea obtusata), Castanediella eucalypticola, Phaeophleospora eucalypticola and Fusicladium eucalypticola (on Eucalyptus robusta), Lareunionomyces syzygii (incl. Lareunionomyces gen. nov.) and Parawiesneriomyces syzygii (incl. Parawiesneriomyces gen. nov.) on leaves of Syzygium jambos. Novel taxa from the USA include Meristemomyces arctostaphylos (on Arctostaphylos patula), Ochroconis
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- 2016
35. A genome-wide association study of marginal zone lymphoma shows association to the HLA region
- Author
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Vijai, J, Wang, Z, Berndt, SI, Skibola, CF, Slager, SL, de Sanjose, S, Melbye, M, Glimelius, B, Bracci, PM, Conde, L, Birmann, BM, Wang, SS, Brooks-Wilson, AR, Lan, Q, de Bakker, PIW, Vermeulen, RCH, Portlock, C, Ansell, SM, Link, BK, Riby, J, North, KE, Gu, J, Hjalgrim, H, Cozen, W, Becker, N, Teras, LR, Spinelli, JJ, Turner, J, Zhang, Y, Purdue, MP, Giles, GG, Kelly, RS, Zeleniuch-Jacquotte, A, Ennas, MG, Monnereau, A, Bertrand, KA, Albanes, D, Lightfoot, T, Yeager, M, Chung, CC, Burdett, L, Hutchinson, A, Lawrence, C, Montalvan, R, Liang, L, Huang, J, Ma, B, Villano, DJ, Maria, A, Corines, M, Thomas, T, Novak, AJ, Dogan, A, Liebow, M, Thompson, CA, Witzig, TE, Habermann, TM, Weiner, GJ, Smith, MT, Holly, EA, Jackson, RD, Tinker, LF, Ye, Y, Adami, H-O, Smedby, KE, De Roos, AJ, Hartge, P, Morton, LM, Severson, RK, Benavente, Y, Boffetta, P, Brennan, P, Foretova, L, Maynadie, M, Mckay, J, Staines, A, Diver, WR, Vajdic, CM, Armstrong, BK, Kricker, A, Zheng, T, Holford, TR, Severi, G, Vineis, P, Ferri, GM, Ricco, R, Miligi, L, Clavel, J, Giovannucci, E, Kraft, P, Virtamo, J, Smith, A, Kane, E, Roman, E, Chiu, BCH, Fraumeni, JF, Wu, X, Cerhan, JR, Offit, K, Chanock, SJ, Rothman, N, Nieters, A, Vijai, J, Wang, Z, Berndt, SI, Skibola, CF, Slager, SL, de Sanjose, S, Melbye, M, Glimelius, B, Bracci, PM, Conde, L, Birmann, BM, Wang, SS, Brooks-Wilson, AR, Lan, Q, de Bakker, PIW, Vermeulen, RCH, Portlock, C, Ansell, SM, Link, BK, Riby, J, North, KE, Gu, J, Hjalgrim, H, Cozen, W, Becker, N, Teras, LR, Spinelli, JJ, Turner, J, Zhang, Y, Purdue, MP, Giles, GG, Kelly, RS, Zeleniuch-Jacquotte, A, Ennas, MG, Monnereau, A, Bertrand, KA, Albanes, D, Lightfoot, T, Yeager, M, Chung, CC, Burdett, L, Hutchinson, A, Lawrence, C, Montalvan, R, Liang, L, Huang, J, Ma, B, Villano, DJ, Maria, A, Corines, M, Thomas, T, Novak, AJ, Dogan, A, Liebow, M, Thompson, CA, Witzig, TE, Habermann, TM, Weiner, GJ, Smith, MT, Holly, EA, Jackson, RD, Tinker, LF, Ye, Y, Adami, H-O, Smedby, KE, De Roos, AJ, Hartge, P, Morton, LM, Severson, RK, Benavente, Y, Boffetta, P, Brennan, P, Foretova, L, Maynadie, M, Mckay, J, Staines, A, Diver, WR, Vajdic, CM, Armstrong, BK, Kricker, A, Zheng, T, Holford, TR, Severi, G, Vineis, P, Ferri, GM, Ricco, R, Miligi, L, Clavel, J, Giovannucci, E, Kraft, P, Virtamo, J, Smith, A, Kane, E, Roman, E, Chiu, BCH, Fraumeni, JF, Wu, X, Cerhan, JR, Offit, K, Chanock, SJ, Rothman, N, and Nieters, A
- Abstract
Marginal zone lymphoma (MZL) is the third most common subtype of B-cell non-Hodgkin lymphoma. Here we perform a two-stage GWAS of 1,281 MZL cases and 7,127 controls of European ancestry and identify two independent loci near BTNL2 (rs9461741, P=3.95 × 10(-15)) and HLA-B (rs2922994, P=2.43 × 10(-9)) in the HLA region significantly associated with MZL risk. This is the first evidence that genetic variation in the major histocompatibility complex influences MZL susceptibility.
- Published
- 2015
36. Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma
- Author
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Cerhan, JR, Berndt, SI, Vijai, J, Ghesquieres, H, McKay, J, Wang, SS, Wang, Z, Yeager, M, Conde, L, de Bakker, PIW, Nieters, A, Cox, D, Burdett, L, Monnereau, A, Flowers, CR, De Roos, AJ, Brooks-Wilson, AR, Lan, Q, Severi, G, Melbye, M, Gu, J, Jackson, RD, Kane, E, Teras, LR, Purdue, MP, Vajdic, CM, Spinelli, JJ, Giles, GG, Albanes, D, Kelly, RS, Zucca, M, Bertrand, KA, Zeleniuch-Jacquotte, A, Lawrence, C, Hutchinson, A, Zhi, D, Habermann, TM, Link, BK, Novak, AJ, Dogan, A, Asmann, YW, Liebow, M, Thompson, CA, Ansell, SM, Witzig, TE, Weiner, GJ, Veron, AS, Zelenika, D, Tilly, H, Haioun, C, Molina, TJ, Hjalgrim, H, Glimelius, B, Adami, H-O, Bracci, PM, Riby, J, Smith, MT, Holly, EA, Cozen, W, Hartge, P, Morton, LM, Severson, RK, Tinker, LF, North, KE, Becker, N, Benavente, Y, Boffetta, P, Brennan, P, Foretova, L, Maynadie, M, Staines, A, Lightfoot, T, Crouch, S, Smith, A, Roman, E, Diver, WR, Offit, K, Zelenetz, A, Klein, RJ, Villano, DJ, Zheng, T, Zhang, Y, Holford, TR, Kricker, A, Turner, J, Southey, MC, Clavel, J, Virtamo, J, Weinstein, S, Riboli, E, Vineis, P, Kaaks, R, Trichopoulos, D, Vermeulen, RCH, Boeing, H, Tjonneland, A, Angelucci, E, Di Lollo, S, Rais, M, Birmann, BM, Laden, F, Giovannucci, E, Kraft, P, Huang, J, Ma, B, Ye, Y, Chiu, BCH, Sampson, J, Liang, L, Park, J-H, Chung, CC, Weisenburger, DD, Chatterjee, N, Fraumeni, JF, Slager, SL, Wu, X, de Sanjose, S, Smedby, KE, Salles, G, Skibola, CF, Rothman, N, Chanock, SJ, Cerhan, JR, Berndt, SI, Vijai, J, Ghesquieres, H, McKay, J, Wang, SS, Wang, Z, Yeager, M, Conde, L, de Bakker, PIW, Nieters, A, Cox, D, Burdett, L, Monnereau, A, Flowers, CR, De Roos, AJ, Brooks-Wilson, AR, Lan, Q, Severi, G, Melbye, M, Gu, J, Jackson, RD, Kane, E, Teras, LR, Purdue, MP, Vajdic, CM, Spinelli, JJ, Giles, GG, Albanes, D, Kelly, RS, Zucca, M, Bertrand, KA, Zeleniuch-Jacquotte, A, Lawrence, C, Hutchinson, A, Zhi, D, Habermann, TM, Link, BK, Novak, AJ, Dogan, A, Asmann, YW, Liebow, M, Thompson, CA, Ansell, SM, Witzig, TE, Weiner, GJ, Veron, AS, Zelenika, D, Tilly, H, Haioun, C, Molina, TJ, Hjalgrim, H, Glimelius, B, Adami, H-O, Bracci, PM, Riby, J, Smith, MT, Holly, EA, Cozen, W, Hartge, P, Morton, LM, Severson, RK, Tinker, LF, North, KE, Becker, N, Benavente, Y, Boffetta, P, Brennan, P, Foretova, L, Maynadie, M, Staines, A, Lightfoot, T, Crouch, S, Smith, A, Roman, E, Diver, WR, Offit, K, Zelenetz, A, Klein, RJ, Villano, DJ, Zheng, T, Zhang, Y, Holford, TR, Kricker, A, Turner, J, Southey, MC, Clavel, J, Virtamo, J, Weinstein, S, Riboli, E, Vineis, P, Kaaks, R, Trichopoulos, D, Vermeulen, RCH, Boeing, H, Tjonneland, A, Angelucci, E, Di Lollo, S, Rais, M, Birmann, BM, Laden, F, Giovannucci, E, Kraft, P, Huang, J, Ma, B, Ye, Y, Chiu, BCH, Sampson, J, Liang, L, Park, J-H, Chung, CC, Weisenburger, DD, Chatterjee, N, Fraumeni, JF, Slager, SL, Wu, X, de Sanjose, S, Smedby, KE, Salles, G, Skibola, CF, Rothman, N, and Chanock, SJ
- Abstract
Diffuse large B cell lymphoma (DLBCL) is the most common lymphoma subtype and is clinically aggressive. To identify genetic susceptibility loci for DLBCL, we conducted a meta-analysis of 3 new genome-wide association studies (GWAS) and 1 previous scan, totaling 3,857 cases and 7,666 controls of European ancestry, with additional genotyping of 9 promising SNPs in 1,359 cases and 4,557 controls. In our multi-stage analysis, five independent SNPs in four loci achieved genome-wide significance marked by rs116446171 at 6p25.3 (EXOC2; P = 2.33 × 10(-21)), rs2523607 at 6p21.33 (HLA-B; P = 2.40 × 10(-10)), rs79480871 at 2p23.3 (NCOA1; P = 4.23 × 10(-8)) and two independent SNPs, rs13255292 and rs4733601, at 8q24.21 (PVT1; P = 9.98 × 10(-13) and 3.63 × 10(-11), respectively). These data provide substantial new evidence for genetic susceptibility to this B cell malignancy and point to pathways involved in immune recognition and immune function in the pathogenesis of DLBCL.
- Published
- 2014
37. Angiotensin II Type 2-Receptor: New Clinically Validated Target in the Treatment of Neuropathic Pain
- Author
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Rice, ASC, primary and Smith, MT, additional
- Published
- 2014
- Full Text
- View/download PDF
38. Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia
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Berndt, SI, Skibola, CF, Joseph, V, Camp, NJ, Nieters, A, Wang, Z, Cozen, W, Monnereau, A, Wang, SS, Kelly, RS, Lan, Q, Teras, LR, Chatterjee, N, Chung, CC, Yeager, M, Brooks-Wilson, AR, Hartge, P, Purdue, MP, Birmann, BM, Armstrong, BK, Cocco, P, Zhang, Y, Severi, G, Zeleniuch-Jacquotte, A, Lawrence, C, Burdette, L, Yuenger, J, Hutchinson, A, Jacobs, KB, Call, TG, Shanafelt, TD, Novak, AJ, Kay, NE, Liebow, M, Wang, AH, Smedby, KE, Adami, H-O, Melbye, M, Glimelius, B, Chang, ET, Glenn, M, Curtin, K, Cannon-Albright, LA, Jones, B, Diver, WR, Link, BK, Weiner, GJ, Conde, L, Bracci, PM, Riby, J, Holly, EA, Smith, MT, Jackson, RD, Tinker, LF, Benavente, Y, Becker, N, Boffetta, P, Brennan, P, Foretova, L, Maynadie, M, McKay, J, Staines, A, Rabe, KG, Achenbach, SJ, Vachon, CM, Goldin, LR, Strom, SS, Lanasa, MC, Spector, LG, Leis, JF, Cunningham, JM, Weinberg, JB, Morrison, VA, Caporaso, NE, Norman, AD, Linet, MS, De Roos, AJ, Morton, LM, Severson, RK, Riboli, E, Vineis, P, Kaaks, R, Trichopoulos, D, Masala, G, Weiderpass, E, Chirlaque, M-D, Vermeulen, RCH, Travis, RC, Giles, GG, Albanes, D, Virtamo, J, Weinstein, S, Clavel, J, Zheng, T, Holford, TR, Offit, K, Zelenetz, A, Klein, RJ, Spinelli, JJ, Bertrand, KA, Laden, F, Giovannucci, E, Kraft, P, Kricker, A, Turner, J, Vajdic, CM, Ennas, MG, Ferri, GM, Miligi, L, Liang, L, Sampson, J, Crouch, S, Park, J-H, North, KE, Cox, A, Snowden, JA, Wright, J, Carracedo, A, Lopez-Otin, C, Bea, S, Salaverria, I, Martin-Garcia, D, Campo, E, Fraumeni, JF, de Sanjose, S, Hjalgrim, H, Cerhan, JR, Chanock, SJ, Rothman, N, Slager, SL, Berndt, SI, Skibola, CF, Joseph, V, Camp, NJ, Nieters, A, Wang, Z, Cozen, W, Monnereau, A, Wang, SS, Kelly, RS, Lan, Q, Teras, LR, Chatterjee, N, Chung, CC, Yeager, M, Brooks-Wilson, AR, Hartge, P, Purdue, MP, Birmann, BM, Armstrong, BK, Cocco, P, Zhang, Y, Severi, G, Zeleniuch-Jacquotte, A, Lawrence, C, Burdette, L, Yuenger, J, Hutchinson, A, Jacobs, KB, Call, TG, Shanafelt, TD, Novak, AJ, Kay, NE, Liebow, M, Wang, AH, Smedby, KE, Adami, H-O, Melbye, M, Glimelius, B, Chang, ET, Glenn, M, Curtin, K, Cannon-Albright, LA, Jones, B, Diver, WR, Link, BK, Weiner, GJ, Conde, L, Bracci, PM, Riby, J, Holly, EA, Smith, MT, Jackson, RD, Tinker, LF, Benavente, Y, Becker, N, Boffetta, P, Brennan, P, Foretova, L, Maynadie, M, McKay, J, Staines, A, Rabe, KG, Achenbach, SJ, Vachon, CM, Goldin, LR, Strom, SS, Lanasa, MC, Spector, LG, Leis, JF, Cunningham, JM, Weinberg, JB, Morrison, VA, Caporaso, NE, Norman, AD, Linet, MS, De Roos, AJ, Morton, LM, Severson, RK, Riboli, E, Vineis, P, Kaaks, R, Trichopoulos, D, Masala, G, Weiderpass, E, Chirlaque, M-D, Vermeulen, RCH, Travis, RC, Giles, GG, Albanes, D, Virtamo, J, Weinstein, S, Clavel, J, Zheng, T, Holford, TR, Offit, K, Zelenetz, A, Klein, RJ, Spinelli, JJ, Bertrand, KA, Laden, F, Giovannucci, E, Kraft, P, Kricker, A, Turner, J, Vajdic, CM, Ennas, MG, Ferri, GM, Miligi, L, Liang, L, Sampson, J, Crouch, S, Park, J-H, North, KE, Cox, A, Snowden, JA, Wright, J, Carracedo, A, Lopez-Otin, C, Bea, S, Salaverria, I, Martin-Garcia, D, Campo, E, Fraumeni, JF, de Sanjose, S, Hjalgrim, H, Cerhan, JR, Chanock, SJ, Rothman, N, and Slager, SL
- Abstract
Genome-wide association studies (GWAS) have previously identified 13 loci associated with risk of chronic lymphocytic leukemia or small lymphocytic lymphoma (CLL). To identify additional CLL susceptibility loci, we conducted the largest meta-analysis for CLL thus far, including four GWAS with a total of 3,100 individuals with CLL (cases) and 7,667 controls. In the meta-analysis, we identified ten independent associated SNPs in nine new loci at 10q23.31 (ACTA2 or FAS (ACTA2/FAS), P=1.22×10(-14)), 18q21.33 (BCL2, P=7.76×10(-11)), 11p15.5 (C11orf21, P=2.15×10(-10)), 4q25 (LEF1, P=4.24×10(-10)), 2q33.1 (CASP10 or CASP8 (CASP10/CASP8), P=2.50×10(-9)), 9p21.3 (CDKN2B-AS1, P=1.27×10(-8)), 18q21.32 (PMAIP1, P=2.51×10(-8)), 15q15.1 (BMF, P=2.71×10(-10)) and 2p22.2 (QPCT, P=1.68×10(-8)), as well as an independent signal at an established locus (2q13, ACOXL, P=2.08×10(-18)). We also found evidence for two additional promising loci below genome-wide significance at 8q22.3 (ODF1, P=5.40×10(-8)) and 5p15.33 (TERT, P=1.92×10(-7)). Although further studies are required, the proximity of several of these loci to genes involved in apoptosis suggests a plausible underlying biological mechanism.
- Published
- 2013
39. Altered antibiotic pharmacokinetics during extracorporeal membrane oxygenation: cause for concern?
- Author
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Shekar, K, Mullany, DV, Smith, MT, Roberts, Jason A, Ghassabian, Sussan, Wallis, Steven C, Fraser, John F, Shekar, K, Mullany, DV, Smith, MT, Roberts, Jason A, Ghassabian, Sussan, Wallis, Steven C, and Fraser, John F
- Published
- 2013
40. Development of simulated and ovine models of extracorporeal life support to improve understanding of circuit-host interactions.
- Author
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Shekar, K, Mullany, DV, Smith, MT, Fung, Yoke L, Diab, Sara, McDonald, Charles I, Dunster, Kimble R, Fisquet, Stephanie, Platts, David G, Stewart, David, Wallis, Steven C, Roberts, Jason A, Fraser, John F, Shekar, K, Mullany, DV, Smith, MT, Fung, Yoke L, Diab, Sara, McDonald, Charles I, Dunster, Kimble R, Fisquet, Stephanie, Platts, David G, Stewart, David, Wallis, Steven C, Roberts, Jason A, and Fraser, John F
- Abstract
Extracorporeal life support (ECLS) is a lifesaving technology that is being increasingly used in patients with severe cardiorespiratory failure. However, ECLS is not without risks. The biosynthetic interface between the patient and the circuit can significantly alter inflammation, coagulation, pharmacokinetics and disposition of trace elements. The relative contributions of the pump, disease and patient in propagating these alterations are difficult to quantify in critically ill patients with multiple organ failure. To design a model where the relevance of individual components could be assessed, in isolation and in combination. Four ECLS models were developed and tested - an in-vitro simulated ECLS circuit; and ECLS in healthy sheep, sheep with acute lung injury (ALI), and sheep with ALI together with transfusion of old or new blood. Successful design of in-vitro and in-vivo models. We successfully conducted multiple experiments in the simulated circuits and ECLS runs in healthy and ALI sheep. We obtained preliminary data on inflammation, coagulation, histology, pharmacokinetics and trace element disposition during ECLS. The establishment of in-vitro and in-vivo models provides a powerful means for enhancing knowledge of the pathophysiology associated with ECLS and identification of key factors likely to influence patient outcomes. A clearer description of the contribution of disease and therapeutic interventions may allow improved design of equipment, membranes, medicines and physiological goals for improved patient care.
- Published
- 2012
41. Sequestration of drugs in the circuit may lead to therapeutic failure during extracorporeal membrane oxygenation.
- Author
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Shekar, K, Mullany, DV, Smith, MT, Roberts, Jason A, Mcdonald, Charles I, Fisquet, Stephanie, Barnett, Adrian G, Ghassabian, Sussan, Wallis, Steven C, Fung, Yoke L, Fraser, John F, Shekar, K, Mullany, DV, Smith, MT, Roberts, Jason A, Mcdonald, Charles I, Fisquet, Stephanie, Barnett, Adrian G, Ghassabian, Sussan, Wallis, Steven C, Fung, Yoke L, and Fraser, John F
- Abstract
Extracorporeal membrane oxygenation (ECMO) is a supportive therapy, with its success dependent on effective drug therapy that reverses the pathology and/or normalizes physiology. However, the circuit that sustains life can also sequester life-saving drugs, thereby compromising the role of ECMO as a temporary support device. This ex vivo study was designed to determine the degree of sequestration of commonly used antibiotics, sedatives and analgesics in ECMO circuits. Four identical ECMO circuits were set up as per the standard protocol for adult patients on ECMO. The circuits were primed with crystalloid and albumin, followed by fresh human whole blood, and were maintained at a physiological pH and temperature for 24 hours. After baseline sampling, fentanyl, morphine, midazolam, meropenem and vancomycin were injected into the circuit at therapeutic concentrations. Equivalent doses of these drugs were also injected into four polyvinylchloride jars containing fresh human whole blood for drug stability testing. Serial blood samples were collected from the ECMO circuits and the controls over 24 hours and the concentrations of the study drugs were quantified using validated assays. Four hundred samples were analyzed. All study drugs, except meropenem, were chemically stable. The average drug recoveries from the ECMO circuits and the controls at 24 hours relative to baseline, respectively, were fentanyl 3% and 82%, morphine 103% and 97%, midazolam 13% and 100%, meropenem 20% and 42%, vancomycin 90% and 99%. There was a significant loss of fentanyl (p = 0.0005), midazolam (p = 0.01) and meropenem (p = 0.006) in the ECMO circuit at 24 hours. There was no significant circuit loss of vancomycin at 24 hours (p = 0.26). Sequestration of drugs in the circuit has implications on both the choice and dosing of some drugs prescribed during ECMO. Sequestration of lipophilic drugs such as fentanyl and midazolam appears significant and may in part explain the increased dosing requireme
- Published
- 2012
42. Site-directed mutants of RTP of Bacillus subtilis and the mechanism of replication fork arrest
- Author
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Duggin, IG, Andersen, PA, Smith, MT, Wilce, JA, King, GF, and Wake, RG
- Subjects
DNA Replication ,Biochemistry & Molecular Biology ,Protein Folding ,Blotting, Western ,DNA Helicases ,DNA ,Regulatory Sequences, Nucleic Acid ,DNA-Binding Proteins ,Molecular Weight ,Kinetics ,Bacterial Proteins ,Genes, Bacterial ,Mutation ,Mutagenesis, Site-Directed ,Replicon ,Nuclear Magnetic Resonance, Biomolecular ,Dimerization ,Bacillus subtilis ,Protein Binding ,Half-Life - Abstract
DNA replication fork arrest during the termination phase of chromosome replication in Bacillus subtilis is brought about by the replication terminator protein (RTP) bound to specific DNA terminator sequences (Ter sites) distributed throughout the terminus region. An attractive suggestion by others was that crucial to the functioning of the RTP-Ter complex is a specific interaction between RTP positioned on the DNA and the helicase associated with the approaching replication fork. In support of this was the behaviour of two site-directed mutants of RTP. They appeared to bind Ter DNA normally but were ineffective in fork arrest as ascertained by in vitro Escherichia coli DnaB helicase and replication assays. We describe here a system for assessing the fork-arrest behaviour of RTP mutants in a bona fide in vivo assay in B. subtilis. One of the previously studied mutants, RTP.Y33N, was non-functional in fork arrest in vivo, as predicted. But through extensive analyses, this RTP mutant was shown to be severely defective in binding to Ter DNA, contrary to expectation. Taken in conjunction with recent findings on the other mutant (RTP.E30K), it is concluded that there is as yet no substantive evidence from the behaviour of RTP mutants to support the RTP-helicase interaction model for fork arrest. In an extension of the present work on RTP.Y33N, we determined the dissociation rates of complexes formed by wild-type (wt) RTP and another RTP mutant with various terminator sequences. The functional wtRTP-TerI complex was quite stable (half-life of 182 minutes), reminiscent of the great stability of the E. coli Tus-Ter complex. More significant were the exceptional stabilities of complexes comprising wtRTP and an RTP double-mutant (E39K.R42Q) bound to some particular terminator sequences. From the measurement of in vivo fork-arrest activities of the various complexes, it is concluded that the stability (half-life) of the whole RTP-Ter complex is not the overriding determinant of arrest, and that the RTP-Ter complex must be actively disrupted, or RTP removed, by the action of the approaching replication fork.
- Published
- 1999
43. Quantitative Determination of Menthol in a Single Puff of Mainstream Cigarette Smoke
- Author
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Meruva, NK, primary, Smith, MT, additional, and Plunkett, SE, additional
- Published
- 2013
- Full Text
- View/download PDF
44. Deletion of guanine nucleotide binding protein alpha(z) subunit in mice induces a gene dose dependent tolerance to morphine
- Author
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Leck, KJ, Bartlett, SE, Smith, MT, Megirian, D, Holgate, J, Powell, KL, Matthaei, KI, Hendry, IA, Leck, KJ, Bartlett, SE, Smith, MT, Megirian, D, Holgate, J, Powell, KL, Matthaei, KI, and Hendry, IA
- Abstract
The mechanism underlying the development of tolerance to morphine is still incompletely understood. Morphine binds to opioid receptors, which in turn activates downstream second messenger cascades through heterotrimeric guanine nucleotide binding proteins (G proteins). In this paper, we show that G(z), a member of the inhibitory G protein family, plays an important role in mediating the analgesic and lethality effects of morphine after tolerance development. We blocked signaling through the G(z) second messenger cascade by genetic ablation of the alpha subunit of the G protein in mice. The Galpha(z) knockout mouse develops significantly increased tolerance to morphine, which depends on Galpha(z) gene dosage. Further experiments demonstrate that the enhanced morphine tolerance is not caused by pharmacokinetic and behavioural learning mechanisms. The results suggest that G(z) signaling pathways are involved in transducing the analgesic and lethality effects of morphine following chronic morphine treatment.
- Published
- 2004
45. Diversity and affinities among species and strains of Lipomyces
- Author
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UCL, Gouliamova, DE, Hennebert, GL., Smith, MT, van der Walt, JP, UCL, Gouliamova, DE, Hennebert, GL., Smith, MT, and van der Walt, JP
- Abstract
Phylogenetic relationships of the yeast genus Lipomyces were studied using sequences from fragments of 5.8S rRNA gene and from internal transcribed spacer region ITS2 of 13 strains (7 type strains included) representing five species and subtaxa, and originating from different geographical locations (Japan, Trinidad, Nigeria, North America, Western Europe, Russia, South Africa, Mauritius). Parsimony and distance analyses were performed. Tree topology from the parsimony and distance analyses of the sequences confirmed the results of nDNA reassociation. Results segregate the 13 isolates of Lipomyces into five major clades.
- Published
- 1998
46. Reliability of Four Simple Mobility Milestones for Stroke Outcome
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Baer, Gillian, primary, Rowe, PJ, additional, Masterton, L, additional, and Smith, MT, additional
- Published
- 2002
- Full Text
- View/download PDF
47. Neuroexcitatory Effects Of Morphine And Hydromorphone: Evidence Implicating The 3-Glucuronide Metabolites
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Smith, Mt, primary
- Published
- 2000
- Full Text
- View/download PDF
48. Measuring the Outcomes of Specific Stroke Subtypes Using Simple Mobility Milestones
- Author
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Smith, MT, primary and Baer, GD, additional
- Published
- 1997
- Full Text
- View/download PDF
49. A comparison of ultrasound and magnetic resonance imaging findings of a Morel-Lavallée lesion of the knee.
- Author
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Goodman BS, Smith MT, Mallempati S, Nuthakki P, Goodman, Bradly S, Smith, Matthew Thomas, Mallempati, Srinivas, and Nuthakki, Prasanth
- Abstract
A Morel-Lavallée lesion (MLL) is a posttraumatic soft-tissue injury characterized by an accumulation of blood, lymph, and other physiologic breakdown products between subcutaneous tissue and underlying fascia. It was first described as occurring over the proximal lateral thigh, but it has since been documented at various anatomic locations. Diagnosis is typically made by careful physical examination and a radiographic analysis, most commonly with magnetic resonance imaging (MRI). Recently, musculoskeletal ultrasound (US) has been recognized as a useful adjunct to and potential replacement for MRI in the diagnosis and monitoring of an MLL. We present a case report of a patient with an MLL of the knee. We obtained magenetic resonance (MRI) and US images at the time of diagnosis, and follow-up US images during convalescence. By doing so, we were able to identify several key sonographic findings of an MLL at this location and compare them with MRI. Although there have been several published reports to date that describe the use of musculoskeletal US in the diagnosis of MLL, this is the first of which we are aware that does so at the knee. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
50. Rheumatic fever - Identification, management and secondary prevention.
- Author
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Smith MT, Zurynski Y, Lester-Smith D, Elliott E, and Carapetis J
- Published
- 2012
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