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Modern society is fueled by fossil energy produced millions of years ago by photosynthetic organisms. Cultivating contemporary photosynthetic producers to generate energy and capture carbon from the atmosphere is one potential approach to sustaining society without disrupting the climate. Algae, photosynthetic aquatic microorganisms, are the fastest growing primary producers in the world and can therefore produce more energy with less land, water, and nutrients than terrestrial plant crops. We review recent progress and challenges in developing bioenergy technology based on algae. A variety of high-value products in addition to biofuels can be harvested from algal biomass, and these may be key to developing algal biotechnology and realizing the commercial potential of these organisms. Aspects of algal biology that differentiate them from plants demand an integrative approach based on genetics, cell biology, ecology, and evolution. We call for a systems approach to research on algal biotechnology rooted in understanding their biology, from the level of genes to ecosystems, and integrating perspectives from physical, chemical, and social sciences to solve one of the most critical outstanding technological problems.

Global demand for transportation fuels will increase rapidly during the upcoming decades, and concerns about fossil-fuel consumption have stimulated research on renewable biofuels that can be sustainably produced from biological feedstocks. However, if unchecked, pathogens and parasites are likely to infect these cultivated biofuel feedstocks, greatly reducing crop yields and potentially threatening the sustainability of renewable bioenergy production efforts. In particular, clonal biofuel crops grown as monocultures at industrial scales will be confronted both by an accumulation of specialist pathogens over time, and by the rapid evolution of those pathogens. We propose possible solutions to these important sustainability problems, with a focus on managing disease risk through crop rotations and the cultivation of multi-species polycultures.

Microalgae represent one of the most promising groups of candidate organisms for replacing fossil fuels with contemporary primary production as a renewable source of energy. Algae can produce many times more biomass per unit area than terrestrial crop plants, easing the competing demands for land with food crops and native ecosystems. However, several aspects of algal biology present unique challenges to the industrial-scale aquaculture of photosynthetic microorganisms. These include high susceptibility to invading aquatic consumers and weeds, as well as prodigious requirements for nutrients that may compete with the fertiliser demands of other crops. Most research on algal biofuel technologies approaches these problems from a cellular or genetic perspective, attempting either to engineer or select algal strains with particular traits. However, inherent functional trade-offs may limit the capacity of genetic selection or synthetic biology to simultaneously optimise multiple functional traits for biofuel productivity and resilience. We argue that a community engineering approach that manages microalgal diversity, species composition and environmental conditions may lead to more robust and productive biofuel ecosystems. We review evidence for trade-offs, challenges and opportunities in algal biofuel cultivation with a goal of guiding research towards intensifying bioenergy production using established principles of community and ecosystem ecology.

A cross-ecosystem comparison of data obtained from 20 French Mediterranean lagoons with contrasting eutrophication status provided the basis for investigating the variables that best predict chlorophyll a (Chl a) concentrations and nutrient limitation of phytoplankton biomass along a strong nutrient enrichment gradient. Summer concentrations of dissolved inorganic nitrogen (DIN) and phosphorus (DIP) comprised only a small fraction of total nitrogen (TN) and total phosphorus (TP). On the basis of inorganic nutrient concentrations, the most oligotrophic lagoons appeared to be phosphorus-limited, with a tendency towards the development of nitrogen limitation as eutrophication increased, as evidenced by decreasing DIN:DIP ratios. A weak but significantly positive relationship was found between dissolved silicate (DSi) and Chl a, reflecting DSi accumulation in the water column along the trophic state gradient and implying a progressive shift away from potential Si limitation of phytoplankton growth. Observed concentrations of Chl a were far better explained by TN and TP than by DIN and DIP concentrations, suggesting that a total nutrient based approach is likely to be the most appropriate for managing eutrophication in Mediterranean lagoons and other coastal waters. These results give credence to the idea that marine and freshwater environments respond in a similar fashion to nutrient enrichment. Resume: Une comparaison inter-sites des concentrations de nutriments et de chlorophylle a (Chl a) issues de 20 lagunes de Mediterranee francaise de degres divers d'eutrophisation a ete menee afin de rechercher la meilleure variable expliquant le niveau de Chl a et d'explorer la limitation de la production primaire par les nutriments au long d'un fort gradient d'enrichissement en azote et phosphore. En ete, l'azote et le phosphore inorganiques dissous (DIN et PID respectivement) constituaient une faible fraction des concentrations d'azote et de phosphore totaux (TN et TP respectivement). Sur la base des concentrations en nutriments inorganiques, la plupart des lagunes oligotrophes semblaient limitees par le phosphore avec une tendance vers des rapports DIN:DIP decroissants, et donc une limitation par l'azote, lorsque l'eutrophisation augmentait. Une correlation positive mais faible a aussi ete obtenue entre les concentrations de silicates (DSi) et Chl a, indiquant une accumulation de DSi dans la colonne d'eau et donc une diminution de la limitation de la croissance du phytoplancton par la silice au fur et a mesure que l'eutrophisation augmentait. Le fait que Chl a etait beaucoup mieux explique e par TN et TP que par DIN et DIP suggere meme que l'approche limnologique basee sur l'ensemble des nutriments est vraisemblablement la meilleure pour gerer l'eutrophisation dans les lagunes mediterraneennes et dans d'autres ecosystemes marins cotiers. Ces constats renforcent l'idee que les ecosystemes marins et d'eau douce repondent de facon similaire a l'enrichissement en nutriments., Introduction The over-enrichment of lakes, inland water courses, and coastal waters with nitrogen (N) and phosphorus (P) has been one of the major effects of human activity on aquatic ecosystems [...]