86 results on '"Slon, V."'
Search Results
2. The makers of the Protoaurignacian and implications for Neandertal extinction
- Author
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Benazzi, S., Slon, V., Talamo, S., Negrino, F., Peresani, M., Bailey, S. E., Sawyer, S., Panetta, D., Vicino, G., Starnini, E., Mannino, M. A., Salvadori, P. A., Meyer, M., Pääbo, S., and Hublin, J.-J.
- Published
- 2015
3. Hyperostotic bone disease in a wombat (Vombatus ursinus)
- Author
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Slon, V., Stein, D., Cohen, H., Medlej, B., Peled, N., and Hershkovitz, I.
- Published
- 2014
- Full Text
- View/download PDF
4. Earliest western expansion of the Uluzzian groups and the late Neanderthal occupation in southern Italy
- Author
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Oxilia G., Bortolini E., Marciani G., Menghi Sartorio J. C., Vazzana A., Bettuzzi M., Panetta D., Arrighi S., Badino F., Figus C., Lugli F., Romandini M., Silvestrini S., Sorrentino R., Moroni A., Donadio C., Morigi M. P., Slon V., Piperno M., Talamo S., Collina C., Benazzi S., and Oxilia G., Bortolini E., Marciani G., Menghi Sartorio J. C., Vazzana A., Bettuzzi M., Panetta D., Arrighi S., Badino F., Figus C., Lugli F., Romandini M., Silvestrini S., Sorrentino R., Moroni A., Donadio C., Morigi M. P., Slon V., Piperno M., Talamo S., Collina C., Benazzi S.
- Subjects
Uluzzian, Neanderthal, H. sapiens, Italy - Published
- 2021
5. ARCHAEOLOGY: The makers of the Protoaurignacian and implications for Neandertal extinction
- Author
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Benazzi, S., Slon, V., Talamo, S., Negrino, F., Peresani, M., Bailey, S. E., Sawyer, S., Panetta, D., Vicino, G., Starnini, E., Mannino, M. A., Salvadori, P. A., Meyer, M., Pääbo, S., and Hublin, J.-J.
- Published
- 2015
- Full Text
- View/download PDF
6. Heating histories and taphonomy of ancient fireplaces: A multi-proxy case study from the Upper Palaeolithic sequence of Abri Pataud (Les Eyzies-de-Tayac, France)
- Author
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Organic geochemistry, Paleomagnetism, GeoLab Algemeen, Organic geochemistry & molecular biogeology, Braadbaart, F., Reidsma, F. H., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, K. G.J., Kaal, J., van Os, B., Marquer, L., Organic geochemistry, Paleomagnetism, GeoLab Algemeen, Organic geochemistry & molecular biogeology, Braadbaart, F., Reidsma, F. H., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, K. G.J., Kaal, J., van Os, B., and Marquer, L.
- Published
- 2020
7. Heating histories and taphonomy of ancient fireplaces: A multi-proxy case study from the Upper Palaeolithic sequence of Abri Pataud (Les Eyzies-de-Tayac, France)
- Author
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Max Planck Society, European Research Council, Braadbaart, F., Reidsma, F. H., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, Klaas G. J., Kaal, Joeri, van Os, B., Marquer, L., Max Planck Society, European Research Council, Braadbaart, F., Reidsma, F. H., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, Klaas G. J., Kaal, Joeri, van Os, B., and Marquer, L.
- Abstract
While the use of fire has long been recognised as a crucial innovation in the cultural evolution of humankind, much research has focused on the (debated) chronology of its earliest use and control, and less on the ways in which fire was used in the deep past. At its latest by the Upper Palaeolithic, hunter-gatherers routinely used fire to heat a wide range of materials, adjusting parameters like temperature, exposure time and fuel type to the specific requirements of the treated materials, for instance in food preparation or tool production. Comparing analyses of the chemical and physical properties of modern materials, heated under a range of controlled conditions in a laboratory, to archaeological ones might allow the reconstruction of the “heating history” of excavated materials and hence to infer the function of particular fires in the past - provided changes affecting the properties of the heated archaeological material during burial time are taken into consideration. To investigate the feasibility of such an approach, heated materials sampled from ~40,000 to 25,000 year old fireplaces (hearths) and their sedimentary matrices from the Upper Palaeolithic Abri Pataud rock shelter in South-Western France are used here to study (1) the fuel type(s) used by the site’s occupants, (2) the temperatures reached in fireplaces and (3) the potential changes in human activities related to fireplaces over time, with the influence of post-depositional processes taken into explicit consideration throughout. For this purpose, we used a range of methods to analyse macroscopically visible as well as “invisible” (microscopic and molecular) heat-altered materials. The results suggest that charred organic materials (COM) encountered in the samples predominantly result from the fuel used in fireplaces, including the earliest reported use of dung as fuel. Earlier suggestions about the use of bone as fuel at the Abri Pataud are not supported by this study. The heating temperature of CO
- Published
- 2020
8. The genomic formation of South and Central Asia
- Author
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Narasimhan, V., Patterson, N., Moorjani, P., Lazaridis, I., Mark, L., Mallick, S., Rohland, N., Bernardos, R., Kim, A., Nakatsuka, N., Olalde, I., Coppa, A., Mallory, J., Moiseyev, V., Monge, J., Olivieri, L., Adamski, N., Broomandkhoshbacht, N., Candilio, F., Cheronet, O., Culleton, B., Ferry, M., Fernandes, D., Gamarra, B., Gaudio, D., Hajdinjak, M., Harney, E., Harper, T., Keating, D., Lawson, A., Michel, M., Novak, M., Oppenheimer, J., Rai, N., Sirak, K., Slon, V., Stewardson, K., Zhang, Z., Akhatov, G., Bagashev, A., Baitanayev, B., Bonora, G., Chikisheva, T., Derevianko, A., Dmitry, E., Douka, K., Dubova, N., Epimakhov, A., Freilich, S., Fuller, D., Goryachev, A., Gromov, A., Hanks, B., Judd, M., Kazizov, E., Khokhlov, A., Kitov, E., Kupriyanova, E., Kuznetsov, P., Luiselli, D., Maksudov, F., Meiklejohn, C., Merrett, D., Micheli, R., Mochalov, O., Zahir, M., Mustafakulov, S., Nayak, A., Petrovna, R., Pettner, D., Potts, R., Razhev, D., Sarno, S., Sikhymbaevae, K., Slepchenko, S., Stepanova, N., Svyatko, S., Vasilyev, S., Vidale, M., Voyakin, D., Yermolayeva, A., Zubova, A., Shinde, V., Lalueza-Fox, C., Meyer, M., Anthony, D., Boivin, N., Thangaraj, K., Kennett, D., Frachetti, M., Pinhasi, R., and Reich, D.
- Abstract
The genetic formation of Central and South Asian populations has been unclear because of an absence of ancient DNA. To address this gap, we generated genome-wide data from 362 ancient individuals, including the first from eastern Iran, Turan (Uzbekistan, Turkmenistan, and Tajikistan), Bronze Age Kazakhstan, and South Asia. Our data reveal a complex set of genetic sources that ultimately combined to form the ancestry of South Asians today. We document a southward spread of genetic ancestry from the Eurasian Steppe, correlating with the archaeologically known expansion of pastoralist sites from the Steppe to Turan in the Middle Bronze Age (2300-1500 BCE). These Steppe communities mixed genetically with peoples of the Bactria Margiana Archaeological Complex (BMAC) whom they encountered in Turan (primarily descendants of earlier agriculturalists of Iran), but there is no evidence that the main BMAC population contributed genetically to later South Asians. Instead, Steppe communities integrated farther south throughout the 2nd millennium BCE, and we show that they mixed with a more southern population that we document at multiple sites as outlier individuals exhibiting a distinctive mixture of ancestry related to Iranian agriculturalists and South Asian hunter-gathers. We call this group Indus Periphery because they were found at sites in cultural contact with the Indus Valley Civilization (IVC) and along its northern fringe, and also because they were genetically similar to post-IVC groups in the Swat Valley of Pakistan. By co-analyzing ancient DNA and genomic data from diverse present-day South Asians, we show that Indus Periphery-related people are the single most important source of ancestry in South Asia —} consistent with the idea that the Indus Periphery individuals are providing us with the first direct look at the ancestry of peoples of the IVC {— and we develop a model for the formation of present-day South Asians in terms of the temporally and geographically proximate sources of Indus Periphery-related, Steppe, and local South Asian hunter-gatherer-related ancestry. Our results show how ancestry from the Steppe genetically linked Europe and South Asia in the Bronze Age, and identifies the populations that almost certainly were responsible for spreading Indo-European languages across much of Eurasia.
- Published
- 2018
9. The earliest modern humans outside Africa
- Author
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Universitat Rovira i Virgili, Hershkovitz I, Weber G, Quam R, Duval M, Grün R, Kinsley L, Ayalon A, Bar-Matthews M, Valladas H, Mercier N, Arsuaga J, Martinón-Torres M, De Castro J, Fornai C, Martín-Francés L, Sarig R, May H, Krenn V, Slon V, Rodríguez L, García R, Lorenzo C, Carretero J, Frumkin A, Shahack-Gross R, Mayer D, Cui Y, Wu X, Peled N, Groman-Yaroslavski I, Weissbrod L, Yeshurun R, Tsatskin A, Zaidner Y, Weinstein-Evron M, Universitat Rovira i Virgili, and Hershkovitz I, Weber G, Quam R, Duval M, Grün R, Kinsley L, Ayalon A, Bar-Matthews M, Valladas H, Mercier N, Arsuaga J, Martinón-Torres M, De Castro J, Fornai C, Martín-Francés L, Sarig R, May H, Krenn V, Slon V, Rodríguez L, García R, Lorenzo C, Carretero J, Frumkin A, Shahack-Gross R, Mayer D, Cui Y, Wu X, Peled N, Groman-Yaroslavski I, Weissbrod L, Yeshurun R, Tsatskin A, Zaidner Y, Weinstein-Evron M
- Abstract
To date, the earliest modern human fossils found outside of Africa are dated to around 90,000 to 120,000 years ago at the Levantine sites of Skhul and Qafzeh. A maxilla and associated dentition recently discovered at Misliya Cave, Israel, was dated to 177,000 to 194,000 years ago, suggesting that members of the Homo sapiens clade left Africa earlier than previously thought. This finding changes our view on modern human dispersal and is consistent with recent genetic studies, which have posited the possibility of an earlier dispersal of Homo sapiens around 220,000 years ago. The Misliya maxilla is associated with full-fledged Levallois technology in the Levant, suggesting that the emergence of this technology is linked to the appearance of Homo sapiens in the region, as has been documented in Africa.
- Published
- 2018
10. Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
- Author
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Renaud, G., https://orcid.org/0000-0002-0630-027X, Slon, V., https://orcid.org/0000-0001-6485-7159, Duggan, A., Kelso, J., and https://orcid.org/0000-0002-3618-322X
- Published
- 2015
11. Research of the change of power of diesel vehicles operating in nonstationary conditions
- Author
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Aulin, V., Slon, V., Lysenko, S., and Golub, D.
- Subjects
присадки ,power ,diesel ,нагрузка ,non-stationary operating conditions ,нестационарные условия эксплуатации ,additives ,мощность ,load ,дизель - Abstract
В статье дана характеристика типов нестационарных условий эксплуатаций в зависимости от условий внешней среды, климатических, дорожных, горнотехнических условий, режимов работы. Определены основные параметры. Показано что в нестационарных условиях работают автомобили в сельскохозяйственном производстве, карьерные самосвалы, автомобили с приводом навесного оборудования, автомобили дорожно-строительной и специальной техники. Разработана методика определения изменения мощности двигателя. Приведены результаты исследований изменения мощности дизеля автомобиля в нестационарных условиях эксплуатации. Дано описание испытательного комплекса исследования влияния композиционного (модифицированного) моторного масла. В комплекс включен компрессор, представленный собой физическую имитационную модель сопряжений дизеля. Исследованию подвергали присадки "НИОД-5", "RoilGold", дисульфид молибдена и предложенную авторами присадку "КГМТ-1". Исследовали как потребляемую, так и эксплуатационную мощности компрессора. Использовали дистанционное управление персональным компьютером и универсальным прибором "цифровой мультиметр DMK-32". Проведено ряд измерений величин напряжения, тока активной, реактивной и полной мощности, коэффициента мощности cosφ, частоты тока и напряжения. Осуществляли контроль, хранения и передачу на компьютер базы данных. При исследовании потребляемой мощности выявлено, что самый высокий уровень характеру для работы на базовом моторном масле М10Г2к, а самый низкий для работы на модифицированном масле присадками дисульфид молибдена и "КГМТ-1". Общей тенденции выявлено снижения потребляемой мощности при внесения в масло присадок. Характер снижения потребляемой мощности компрессора зависит от типа присадок, их состава и концентрации. Зафиксировано обратную картину для эксплуатационной мощности. Проведены исследования потребляемой мощности при ступенчатом нагружении и разгружении компрессора. Выявлено, что характер изменения мощности зависит от характера нагружения и разгружения, а также типа присадки. В целом потребляемая мощность снижается на 11…18 % при модифицировании моторного масла присадками. The article presents the characteristics of the types of non-stationary operating conditions depending on the external environment, climate, road, mining conditions and operation modes. Main parameters were determined. It is shown that non-stationary conditions include operation of the vehicles in agricultural production, dump trucks in quarries, vehicles with attached implements, construction and road-building vehicles. The methodology for determining the change in engine power was developed. The results of research of changes in power of a diesel engine in non-stationary conditions have been presented. The testing complex of the study of the influence of the compositional (modified) engine oil was described. The complex includes a compressor represented by a physical simulation model of the diesel couplings. The additives "НИОД-5", "RoilGold", molybdenum disulfide and the proposed additive "КГМТ-1" by the authors were tested. We studied both consumption and operational power of the compressor. The remote control of the PC and versatile instrument "Digital Multimeter DMK-32" were used. A series of measurements were made including the voltage value, the current of active, reactive and full power, the power coefficient cosφ, frequency of current and voltage. We controlled, saved and transferred the database to a computer. In the study of the power consumption it was found out that the highest level of character to work on the basic engine oil M10Г2к, and the lowest for a modified oil additives and molybdenum disulfide "КГМТ-1". The overall tendency showed the reduction in power consumption when additives were added into the oil. The character of the decrease in power consumption of the compressor is dependent upon the additives, their composition and concentration. We fixed the feedback for the operational power. Investigations were carried out on the power consumption at a stepped loading and unloading of the compressor. It was found out that the changes of the power depend on the type of loading and unloading, as well as the type of additives. In general, the power consumption is reduced by 11 ... 18% in the modified engine oil with additives.
- Published
- 2015
12. Influence additives to motor oil on the characteristics of diesel engines, has worked in the non-stationary conditions oper
- Author
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Aulin, V., Slon, V., and Holub, D.
- Subjects
моторна олива ,non-stationary conditions ,torque ,питома витрата палива ,присадки ,момент тертя ,diesel ,power ,fuel consumption ,motor oil ,потужність ,крутний момент ,additives ,нестаціонарні умови ,frictional torque ,дизель - Abstract
В статті розглянуто вплив присадок на зовнішньо-швидкісні характеристики дизелів, що працюють в нестаціонарних умовах. Виявлено збільшення рівня потужності та крутного моменту і зниження питомої витрати палива при додаванні присадок дисульфід молібдена, "НИОД-5", "Roil Gold, і "КГМТ-1" запропонованої авторами. Отримані результати обґрунтовуються впливом присадок на характеристики та властивості моторної оливи, її зношувальну здатність та припрацьованість основних спряжень дизелі. Визначено також відновлюваний характер властивостей оливи при додаванні присадок, що підтверджують експериментальні дослідження зміни моменту тертя з напрацюванням в різних режимах функціонування: безперервному і "пуск-зупинка". The article considers the influence of additives on the externally-speed characteristics of diesel engines operating under transient conditions. Investigations were carried out on the break-in-roller stand КС-276-032 to validate the running-in and testing of diesel engines in the cold no-load and hot load and no load. Testing procedures and evaluate the performance of the engine. In the basic engine oil added various functional additives in optimum concentrations. Speed range crankshaft commensurate with the operational range. Tests were carried out in a continuous mode, and the "start-stop". Revealed that the addition of molybdenum disulphide additives, "НИОД-5", "Roil Gold", and "КГМТ-1" suggested by the authors, increased levels of power and torque and reduced fuel consumption. The findings substantiate the influence of additives on the characteristics and properties of the engine oil, it wears capacity and runningmates main diesel. Restorative properties of the oil with the addition of additives, is supported by experimental studies of changes in the friction torque with operating in different modes of operation: continuous and "start-stop". In the used motor oil without making the test additives friction torque peaks recorded in a continuous mode and in the "start-stop". When making additive remained initial peak friction torque in continuous operation at the beginning of each period mode "start-stop". To some extent reduce the overall level of the friction torque value. The characteristic is that the moment of friction in the reduction of oil additives of magnitude lower than in the continuous mode.
- Published
- 2014
13. The variation of characteristics tribotechnical conjugations diesels with their work in different modes
- Author
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Aulin, V., Slon, V., and Lysenko, S.
- Subjects
напрацювання ,working hours ,an electronic unit ,композиційна моторна олива ,граничний рівень моменту тертя ,composite motor oil ,friction torque ,присадки ,момент тертя ,diesel ,friction torque limit level ,електронний блок ,additives ,дизель - Abstract
В статті наведено результати впливу різних присадок на зміну моменту тертя спряжених зразків "ролик-колодочка" змащених базовою та композиційною моторною оливою М10Г2к на машині тертя СМЦ-2. Дослідження проведені в безперервному та "пуск-зупинка" режимі. Виявлено, що при додаванні присадок "НИОД-5", "Roil Gold", "КГМТ-1" до моторної оливи М10Г2к зменшується рівень і ширина піку моменту тертя на першому інтервалі і зниження піків моменту тертя на решта інтервалах випробувань. Встановлено, що моментом тертя спряжених зразків та деталей, які працюють на моторній оливі М10Г2к, можна керувати, а спрацьовану моторну оливу – відновлювати при її модифікуванні присадкою. The article describes the effects of various additives to replace the friction torque coupled models "roller-block" base lubricants and motor oils compositional M10Г2к on the friction machine СМЦ-2. Studies conducted in a continuous and "start-stop" mode. We found that the addition of additives "Ниод-5", "Roil Gold", "КГМТ-1" to the motor oil M10Г2к reduced level and the peak width of the first friction torque range and lower peak friction torque test on the remaining intervals. Found that the friction factor conjugate samples and components that run on motor oil M10Г2к can be handled and worn motor oil – restore it at modifying additive.
- Published
- 2013
14. Change of physical and chemical indexes of motor oil of diesels of dumper in the process of exploitation
- Author
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Aulin, V., Slon, V., and Kuzyk, О.
- Subjects
густина ,моторна олива ,присадка ,пуск-зупинка ,фізичне поле ,коксівність - Abstract
В статті виявлено вплив умов експлуатації на зміну фізико-хімічних показників базових моторних олив дизелів автосамоскидів, наведена схема причинно-наслідкових зв'язків цієї зміни. Дано результати досліджень зміни коксівності, густини оливи від терміну експлуатації, показано зміну концентрації хімічних елементів в ній. Встановлено, що ресурсом кар'єрних автосамоскидів можна управляти та збільшувати інтервал ТО, здійснюючи модифікуючий вплив на моторну оливу додаванням присадок та обробкою фізичним полем. Influence of external on the changes of physical and chemical indexes of base motor oil of diesels of dumper environments, the brought chart over of relationship of cause connections of these changes, is educed in the article. The results of researches of change of coked, closenesses of oil, are given from the term of exploitation, the change of concentration of chemical elements is shown in him. It is set that it is possible to manage the resource of quarry dumper and increase an interval maintenance, carrying out modifying influence on motor oil addition of additives and treatment the physical field.
- Published
- 2012
15. Вплив присадок до моторних олив на характеристики дизелів, що працюють в нестаціонарних умовах експлуатації
- Author
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Аулін, В. В., Слонь, В. В., Голуб, Д. В., Aulin, V., Slon, V., Holub, D., Аулін, В. В., Слонь, В. В., Голуб, Д. В., Aulin, V., Slon, V., and Holub, D.
- Abstract
В статті розглянуто вплив присадок на зовнішньо-швидкісні характеристики дизелів, що працюють в нестаціонарних умовах. Виявлено збільшення рівня потужності та крутного моменту і зниження питомої витрати палива при додаванні присадок дисульфід молібдена, "НИОД-5", "Roil Gold, і "КГМТ-1" запропонованої авторами. Отримані результати обґрунтовуються впливом присадок на характеристики та властивості моторної оливи, її зношувальну здатність та припрацьованість основних спряжень дизелі. Визначено також відновлюваний характер властивостей оливи при додаванні присадок, що підтверджують експериментальні дослідження зміни моменту тертя з напрацюванням в різних режимах функціонування: безперервному і "пуск-зупинка". The article considers the influence of additives on the externally-speed characteristics of diesel engines operating under transient conditions. Investigations were carried out on the break-in-roller stand КС-276-032 to validate the running-in and testing of diesel engines in the cold no-load and hot load and no load. Testing procedures and evaluate the performance of the engine. In the basic engine oil added various functional additives in optimum concentrations. Speed range crankshaft commensurate with the operational range. Tests were carried out in a continuous mode, and the "start-stop". Revealed that the addition of molybdenum disulphide additives, "НИОД-5", "Roil Gold", and "КГМТ-1" suggested by the authors, increased levels of power and torque and reduced fuel consumption. The findings substantiate the influence of additives on the characteristics and properties of the engine oil, it wears capacity and runningmates main diesel. Restorative properties of the oil with the addition of additives, is supported by experimental studies of changes in the friction torque with operating in different modes of operation: continuous and "start-stop". In the used motor oil without making the test additives friction torque peaks recorded in a continuous mode and in the "
- Published
- 2014
16. Характер зміни триботехнічних характеристик спряжень дизелів при їх роботі в різних режимах
- Author
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Аулін, В. В., Слонь, В. В., Лисенко, С. В., Aulin, V., Slon, V., Lysenko, S., Аулін, В. В., Слонь, В. В., Лисенко, С. В., Aulin, V., Slon, V., and Lysenko, S.
- Abstract
В статті наведено результати впливу різних присадок на зміну моменту тертя спряжених зразків "ролик-колодочка" змащених базовою та композиційною моторною оливою М10Г2к на машині тертя СМЦ-2. Дослідження проведені в безперервному та "пуск-зупинка" режимі. Виявлено, що при додаванні присадок "НИОД-5", "Roil Gold", "КГМТ-1" до моторної оливи М10Г2к зменшується рівень і ширина піку моменту тертя на першому інтервалі і зниження піків моменту тертя на решта інтервалах випробувань. Встановлено, що моментом тертя спряжених зразків та деталей, які працюють на моторній оливі М10Г2к, можна керувати, а спрацьовану моторну оливу – відновлювати при її модифікуванні присадкою. The article describes the effects of various additives to replace the friction torque coupled models "roller-block" base lubricants and motor oils compositional M10Г2к on the friction machine СМЦ-2. Studies conducted in a continuous and "start-stop" mode. We found that the addition of additives "Ниод-5", "Roil Gold", "КГМТ-1" to the motor oil M10Г2к reduced level and the peak width of the first friction torque range and lower peak friction torque test on the remaining intervals. Found that the friction factor conjugate samples and components that run on motor oil M10Г2к can be handled and worn motor oil – restore it at modifying additive.
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- 2013
17. Зміна фізико-хімічних показників моторної оливи дизелів автосамоскидів в процесі експлуатації
- Author
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Аулін, В. В., Слонь, В. В., Кузик, О. В., Aulin, V., Slon, V., Kuzyk, О., Аулін, В. В., Слонь, В. В., Кузик, О. В., Aulin, V., Slon, V., and Kuzyk, О.
- Abstract
В статті виявлено вплив умов експлуатації на зміну фізико-хімічних показників базових моторних олив дизелів автосамоскидів, наведена схема причинно-наслідкових зв'язків цієї зміни. Дано результати досліджень зміни коксівності, густини оливи від терміну експлуатації, показано зміну концентрації хімічних елементів в ній. Встановлено, що ресурсом кар'єрних автосамоскидів можна управляти та збільшувати інтервал ТО, здійснюючи модифікуючий вплив на моторну оливу додаванням присадок та обробкою фізичним полем. Influence of external on the changes of physical and chemical indexes of base motor oil of diesels of dumper environments, the brought chart over of relationship of cause connections of these changes, is educed in the article. The results of researches of change of coked, closenesses of oil, are given from the term of exploitation, the change of concentration of chemical elements is shown in him. It is set that it is possible to manage the resource of quarry dumper and increase an interval maintenance, carrying out modifying influence on motor oil addition of additives and treatment the physical field.
- Published
- 2012
18. Assyrian Attitude Towards Captive Enemies: A 2700-year-old Paleo-forensic Study
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Cohen, H., primary, Slon, V., additional, Barash, A., additional, May, H., additional, Medlej, B., additional, and Hershkovitz, I., additional
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- 2012
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19. Trauma to the Skull: A Historical Perspective from the Southern Levant (4300BCE-1917CE)
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Cohen, H., primary, Sarie, I., additional, Medlej, B., additional, Bocquentin, F., additional, Toledano, T., additional, Hershkovitz, I., additional, and Slon, V., additional
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- 2012
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20. A Case of Dwarfism from the Byzantine City Rehovot-in-the-Negev, Israel
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Slon, V., primary, Nagar, Y., additional, Kuperman, T., additional, and Hershkovitz, I., additional
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- 2011
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21. Assyrian Attitude Towards Captive Enemies: A 2700-year-old Paleo-forensic Study.
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Cohen, H., Slon, V., Barash, A., May, H., Medlej, B., and Hershkovitz, I.
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- *
ASSYRIANS , *HUMAN skeleton , *IRON Age , *VIOLENCE , *COMBATANTS & noncombatants (International law) , *HISTORY - Abstract
The Assyrians, who ruled at the height of their power between Egypt and the Persian Gulf (745-630 BC), are known from historical records to have been cruel and unrelenting towards their enemies. However, osteological evidence for this behavior is scarce. We herein present a case of an adult male skeleton, dated to the Iron Age IIB period (second half of the 8th century BC), who manifests traumatic injuries to the skull, left forearm, vertebrae, and ribs. Using modern forensic methods, the injuries were studied, and the consequences that led to these injuries reconstructed. Three possible scenarios are presented: (i) wounds inflicted during a chaotic battle; (ii) wounds caused by the chasing and capturing of a victim; and (iii) a commonly practiced violent attitude of Assyrian soldiers towards a captive combatant. Combining all the evidence at hand, the latter scenario appears more likely. This skeleton may therefore be one of the sole tangible physical evidence for the veracity of the Assyrians' post-battle behavior, as depicted in ancient texts and reliefs. Copyright © 2012 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
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- 2015
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22. Trauma to the Skull: A Historical Perspective from the Southern Levant (4300BCE-1917CE).
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Cohen, H., Sarie, I., Medlej, B., Bocquentin, F., Toledano, T., Hershkovitz, I., and Slon, V.
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SKULL injuries ,BLUNT trauma ,VIOLENCE ,INTERPERSONAL conflict ,COPPER Age ,BRONZE Age ,IRON Age - Abstract
ABSTRACT Background: Although the southern Levant is commonly perceived as having been a violent region throughout history, few studies have explored the pattern and intensity of skull trauma through time in the general population. The aim of this study is to follow changes in traumatic injury patterns in the southern Levant, over an extensive period of 6,000 years. Methods: 783 archaeological skulls from the Tel Aviv University osteological collection were examined for evidence of trauma. The specimens were divided into three periods: Chalcolithic-Bronze-Iron Age (4300-520 BCE), Hellenistic-Roman-Byzantine Period (332 BCE-640 CE), and Early and Late Arab Period (640-1917 CE). The characteristics of injury on each skull were recorded. Results: A high frequency (25%) of traumatic lesions to the skull was evident among historic populations of the southern Levant, a rate that did not fluctuate significantly over 6,000 years. The most common pattern of trauma was minor circular depressed injuries. Most of the injuries were located on the parietal or frontal bones. Traumatic lesions were more frequent in males than in females, and in mature individuals than in adolescents and children, during all periods. Conclusions: The rate of trauma in the southern Levantine populations was shown to be considerably higher than in other archaeological populations worldwide. The fact that no significant differences in trauma rates were found over time implies that socio-economical shifts (from agrarian to urban populations) had little impact on the local populations' aggressive behavior. In contrast, changes in type of injury, from blunt force trauma to sharp force trauma and eventually projectile trauma, reflects changes in weaponry over time. The accumulated characteristics of cranial trauma pattern (type, location, side, size, sex, age) suggest that most of the individuals studied were not engaged directly in warfare. Rather, most injuries seem to be due to blows given during interpersonal violent encounters. Copyright © 2012 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
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- 2014
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23. A Case of Dwarfism from the Byzantine City Rehovot-in-the-Negev, Israel.
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Slon, V., Nagar, Y., Kuperman, T., and Hershkovitz, I.
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- *
ACHONDROPLASIA , *MORPHOMETRICS , *TOMOGRAPHY in archaeology , *DWARFISM ,BYZANTINE Empire - Abstract
ABSTRACT Skeletons of dwarfs have been found in many archaeological sites from around the world. Nevertheless, their descriptions (morphologically and metrically) are very limited. We describe herein the skeleton of a male dwarf, approximately 35-50 years old, found in the Byzantine cemetery (5th-8th century CE) of Rehovot-in-the-Negev, southern Israel. Living stature was estimated at 120-125 cm. Detailed morphological skeletal descriptions and morphometric analysis, together with computed tomography (CT) observations, suggest a diagnosis of achondroplasia. The long bones anomalies, in tandem with other features such as hydrocephalus and spinal stenosis, are discussed in regard to their effect on the dwarf's daily life. The putative place of dwarfs in early Christian communities, compared with dwarfs from other times and places, will be addressed. Copyright © 2011 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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24. Neandertal and Denisovan DNA from Pleistocene sediments.
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Slon, V., Hopfe, C., Weiß, C.L., Mafessoni, F., de la Rasilla, M., Lalueza-Fox, C., Rosas, A., Soressi, M., Knul, M.V., Miller, R., Stewart, John R., Derevianko, A.P., Jacobs, Z., Li, B., Roberts, R.G., Shunkov, M.V., de Lumley, H., Perrenoud, C, Gušić, I., Kućan, Z., Rudan, P., Aximu-Petri, A., Essel, E., Nagel, S., Nickel, B., Schmidt, A., Prüfer, K., Kelso, J., Burbano, H.A., Pääbo, S., Meyer, M., Slon, V., Hopfe, C., Weiß, C.L., Mafessoni, F., de la Rasilla, M., Lalueza-Fox, C., Rosas, A., Soressi, M., Knul, M.V., Miller, R., Stewart, John R., Derevianko, A.P., Jacobs, Z., Li, B., Roberts, R.G., Shunkov, M.V., de Lumley, H., Perrenoud, C, Gušić, I., Kućan, Z., Rudan, P., Aximu-Petri, A., Essel, E., Nagel, S., Nickel, B., Schmidt, A., Prüfer, K., Kelso, J., Burbano, H.A., Pääbo, S., and Meyer, M.
- Abstract
Although a rich record of Pleistocene human-associated archaeological assemblages exists, the scarcity of hominin fossils often impedes the understanding of which hominins occupied a site. Using targeted enrichment of mitochondrial DNA we show that cave sediments represent a rich source of ancient mammalian DNA that often includes traces of hominin DNA, even at sites and in layers where no hominin remains have been discovered. By automation-assisted screening of numerous sediment samples we detect Neandertal DNA in eight archaeological layers from four caves in Eurasia. In Denisova Cave we retrieved Denisovan DNA in a Middle Pleistocene layer near the bottom of the stratigraphy. Our work opens the possibility to detect the presence of hominin groups at sites and in areas where no skeletal remains are found.
25. Direct evidence that late Neanderthal occupation precedes a technological shift in southwestern Italy
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Gregorio Oxilia, Eugenio Bortolini, Giulia Marciani, Jessica Cristina Menghi Sartorio, Antonino Vazzana, Matteo Bettuzzi, Daniele Panetta, Simona Arrighi, Federica Badino, Carla Figus, Federico Lugli, Matteo Romandini, Sara Silvestrini, Rita Sorrentino, Adriana Moroni, Carlo Donadio, Maria Pia Morigi, Viviane Slon, Marcello Piperno, Sahra Talamo, Carmine Collina, Stefano Benazzi, Comune di Mondragone, Museo Civico Archeologico Biagio Greco, Soprintendenza Archeologia, Belle Arti e Paesaggio per le province di Caserta e Benevento, European Research Council, Max Planck Society, Università di Bologna, Soprintendenza Archeologia, Belle Arti e Paesaggio per le province di Salerno e Avellino, Oxilia, G., Bortolini, E., Marciani, G., Menghi Sartorio, J. C., Vazzana, A., Bettuzzi, M., Panetta, D., Arrighi, S., Badino, F., Figus, C., Lugli, F., Romandini, M., Silvestrini, S., Sorrentino, R., Moroni, A., Donadio, C., Morigi, M. P., Slon, V., Piperno, M., Talamo, S., Collina, C., Benazzi, S., Oxilia, G, Bortolini, E, Marciani, G, Sartorio, JCM, Vazzana, A, Bettuzzi, M, Panetta, D, Arrighi, S, Badino, F, Figus, C, Lugli, F, Romandini, M, Silvestrini, S, Sorrentino, R, Moroni, A, Donadio, C, Morigi, MP, Slon, V, Piperno, M, Talamo, S, Collina, C, Benazzi, S, Municipality of Mondragone, and Soprintendenza Archeologia Belle Arti e Paesaggio di Salerno e Avellino, Benevento e Caserta
- Subjects
deciduous human molars, Mediterranean Europe, Neanderthal, supervised learning algorithms, Uluzzian, virtual analysis ,Uluzzian ,deciduous human molars ,Mediterranean Europe ,Neanderthal ,supervised learning algorithms ,virtual analysis ,deciduous human molar ,supervised learning algorithm ,Southwestern Italy ,Technological shift ,Late Neanderthal occupation - Abstract
[Objectives] During the middle-to-upper Paleolithic transition (50,000 and 40,000¿years ago), interaction between Neanderthals and Homo sapiens varied across Europe. In southern Italy, the association between Homo sapiens fossils and non-Mousterian material culture, as well as the mode and tempo of Neanderthal demise, are still vividly debated. In this research, we focus on the study of two human teeth by using 3D geometric morphometric approaches for a reliable taxonomical attribution as well as obtaining new radiometric dates on the archeological sequence., [Material and Methods] This work presents two lower deciduous molars uncovered at Roccia San Sebastiano (Mondragone-Caserta, Italy), stratigraphically associated with Mousterian (RSS1) and Uluzzian (RSS2) artifacts. To obtain a probabilistic attribution of the two RSS teeth to each reference taxa group composed of Neanderthals and Homo sapiens, we performed and compared the performance of three supervised learning algorithms (flexible discriminant analysis, multiadaptive regression splines, and random forest) on both crown and cervical outlines obtained by virtual morphometric methods. [Discussion] This site yields the most recent direct evidence for a Neanderthal presence in southern Italy and confirms a later shift to upper Paleolithic technology in southwestern Italy compared to the earliest Uluzzian evidence at Grotta del Cavallo (Puglia, Italy)., The authors are very grateful to the Municipality of Mondragone for supporting and funding the excavations. We also thank the Museo Civico Archeologico Biagio Greco, Mondragone, Caserta, Italy which provided funding, logistic support and welcomed the researcher since 1999 as well as an acknowledgement to the Soprintendenza Archeologia Belle Arti e Paesaggio di Salerno e Avellino, Benevento e Caserta. V.S. acknowledges funding from the Alon Fellowship. This study received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No 724046 – SUCCESS, http://www.erc-success.eu); the radiocarbon dating was supported by the ERC-RESOLUTION grant agreement No 803147, https://site.unibo.it/resolution-erc/en);); the DNA analysis was funded by the European Research Council (grant agreement number 694707 to Svante Pääbo) and the Max Planck Society. We thank E. Essel, S. Nagel, B. Nickel, J. Richter, B. Schellbach and A. Weihmann for work in the ancient DNA lab; and M. Meyer and S. Pääbo for their input. Open Access Funding provided by Universita degli Studi di Bologna within the CRUI-CARE Agreement.
- Published
- 2022
26. Genetic insights into the social organization of Neanderthals
- Author
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Laurits Skov, Stéphane Peyrégne, Divyaratan Popli, Leonardo N. M. Iasi, Thibaut Devièse, Viviane Slon, Elena I. Zavala, Mateja Hajdinjak, Arev P. Sümer, Steffi Grote, Alba Bossoms Mesa, David López Herráez, Birgit Nickel, Sarah Nagel, Julia Richter, Elena Essel, Marie Gansauge, Anna Schmidt, Petra Korlević, Daniel Comeskey, Anatoly P. Derevianko, Aliona Kharevich, Sergey V. Markin, Sahra Talamo, Katerina Douka, Maciej T. Krajcarz, Richard G. Roberts, Thomas Higham, Bence Viola, Andrey I. Krivoshapkin, Kseniya A. Kolobova, Janet Kelso, Matthias Meyer, Svante Pääbo, Benjamin M. Peter, Max Planck Institute for Evolutionary Anthropology [Leipzig], Max-Planck-Gesellschaft, Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Tel Aviv University (TAU), University of Oxford, Institute of Archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences (SB RAS), University of Bologna/Università di Bologna, Polish Academy of Sciences (PAN), University of Wollongong [Australia], University of Vienna [Vienna], University of Toronto, Skov L., Peyregne S., Popli D., Iasi L.N.M., Deviese T., Slon V., Zavala E.I., Hajdinjak M., Sumer A.P., Grote S., Bossoms Mesa A., Lopez Herraez D., Nickel B., Nagel S., Richter J., Essel E., Gansauge M., Schmidt A., Korlevic P., Comeskey D., Derevianko A.P., Kharevich A., Markin S.V., Talamo S., Douka K., Krajcarz M.T., Roberts R.G., Higham T., Viola B., Krivoshapkin A.I., Kolobova K.A., Kelso J., Meyer M., Paabo S., and Peter B.M.
- Subjects
Male ,Genome ,Multidisciplinary ,[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and Prehistory ,Animal ,Homozygote ,[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology ,Cave ,DNA, Mitochondrial ,Siberia ,Caves ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Y Chromosome ,Animals ,Humans ,Hybridization, Genetic ,Female ,Family ,Human ,Neanderthals - Abstract
Genomic analyses of Neanderthals have previously provided insights into their population history and relationship to modern humans1–8, but the social organization of Neanderthal communities remains poorly understood. Here we present genetic data for 13 Neanderthals from two Middle Palaeolithic sites in the Altai Mountains of southern Siberia: 11 from Chagyrskaya Cave9,10 and 2 from Okladnikov Cave11—making this one of the largest genetic studies of a Neanderthal population to date. We used hybridization capture to obtain genome-wide nuclear data, as well as mitochondrial and Y-chromosome sequences. Some Chagyrskaya individuals were closely related, including a father–daughter pair and a pair of second-degree relatives, indicating that at least some of the individuals lived at the same time. Up to one-third of these individuals’ genomes had long segments of homozygosity, suggesting that the Chagyrskaya Neanderthals were part of a small community. In addition, the Y-chromosome diversity is an order of magnitude lower than the mitochondrial diversity, a pattern that we found is best explained by female migration between communities. Thus, the genetic data presented here provide a detailed documentation of the social organization of an isolated Neanderthal community at the easternmost extent of their known range.
- Published
- 2022
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27. A late Neanderthal tooth from northeastern Italy
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Thomas Higham, Giulia Marciani, Alessia Nava, Davide Delpiano, Carla Figus, Gregorio Oxilia, Giovanni Di Domenico, Simona Arrighi, Matthias Meyer, Federica Badino, Luca Bondioli, Federico Lugli, Matteo Romandini, Eugenio Bortolini, Jean-Jacques Hublin, Daniele Panetta, Sara Silvestrini, Stefano Benazzi, Marco Peresani, Gabriele Terlato, Stéphane Peyrégne, Petra Martini, Viviane Slon, Jessica C. Menghi Sartorio, Romandini M., Oxilia G., Bortolini E., Peyregne S., Delpiano D., Nava A., Panetta D., Di Domenico G., Martini P., Arrighi S., Badino F., Figus C., Lugli F., Marciani G., Silvestrini S., Menghi Sartorio J.C., Terlato G., Hublin J.-J., Meyer M., Bondioli L., Higham T., Slon V., Peresani M., and Benazzi S.
- Subjects
Cuspid ,010506 paleontology ,Neanderthal ,Pleistocene ,Neanderthal, Deciduous human canine, Late Middle Paleolithic, Mediterranean Europe, Virtual analysis, 2D and 3D enamel thickness ,Socio-culturale ,Deciduous human canine ,01 natural sciences ,law.invention ,Sequence (geology) ,law ,biology.animal ,Maxilla ,Animals ,0601 history and archaeology ,Sequence stratigraphy ,Radiocarbon dating ,Tooth, Deciduous ,LS8_5 ,Ecology, Evolution, Behavior and Systematics ,Neanderthals ,0105 earth and related environmental sciences ,Paleodontology ,Late Middle Palaeolithic ,060101 anthropology ,biology ,Fossils ,Late Middle Paleolithic ,Mousterian ,SH6_2 ,06 humanities and the arts ,Archaeology ,Mediterranean Europe ,2D and 3D enamel thickness ,Virtual analysis ,Geography ,Deciduous ,Italy ,Anthropology ,Rock shelter - Abstract
The site of Riparo Broion (Vicenza, northeastern Italy) preserves a stratigraphic sequence documenting the Middle-to-Upper Paleolithic transition, in particular the final Mousterian and the Uluzzian cultures. In 2018, a human tooth was retrieved from a late Mousterian level, representing the first human remain ever found from this rock shelter (Riparo Broion 1). Here, we provide the morphological description and taxonomic assessment of Riparo Broion 1 with the support of classic and virtual morphology, 2D and 3D analysis of the topography of enamel thickness, and DNA analysis. The tooth is an exfoliated right upper deciduous canine, and its general morphology and enamel thickness distribution support attribution to a Neanderthal child. Correspondingly, the mitochondrial DNA sequence from Riparo Broion 1 falls within the known genetic variation of Late Pleistocene Neanderthals, in accordance with newly obtained radiocarbon dates that point to approximately 48 ka cal BP as the most likely minimum age for this specimen. The present work describes novel and direct evidence of the late Neanderthal occupation in northern Italy that preceded the marked cultural and technological shift documented by the Uluzzian layers in the archaeological sequence at Riparo Broion. Here, we provide a new full morphological, morphometric, and taxonomic analysis of Riparo Broion 1, in addition to generating the wider reference sample of Neanderthal and modern human upper deciduous canines. This research contributes to increasing the sample of fossil remains from Italy, as well as the number of currently available upper deciduous canines, which are presently poorly documented in the scientific literature.
- Published
- 2020
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28. The makers of the Protoaurignacian and implications for Neandertal extinction
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Fabio Negrino, Daniele Panetta, Shara E. Bailey, Piero A. Salvadori, Stefano Benazzi, G. Vicino, Marco Peresani, Matthias Meyer, Susanna Sawyer, Svante Pääbo, Elisabetta Starnini, Sahra Talamo, Marcello A. Mannino, Viviane Slon, Jean-Jacques Hublin, Benazzi, S., Slon, V., Talamo, S., Negrino, F., Peresani, M., Bailey, S.E., Sawyer, S., Panetta, D., Vicino, G., Starnini, E., Mannino, M.A., Salvadori, P.A., Meyer, M., Paabo, S., and Hublin, J.-J.
- Subjects
genome sequence ,Molecular Sequence Data ,Socio-culturale ,Context (language use) ,Human type ,Biology ,Extinction, Biological ,DNA, Mitochondrial ,NO ,Neanderthal ,Paleontology ,stomatognathic system ,Animals ,Humans ,Base sequence ,Dental Enamel ,Phylogeny ,Neanderthals ,adaptive shift ,Extinction ,Genome ,Multidisciplinary ,Base Sequence ,Animal ,Dental enamel ,human climate interaction, genome sequence, adaptive shift ,Deciduous ,Demise ,DNA ,Biological ,Mitochondrial ,Incisor ,Animals, Archaeology, Base Sequence, DNA, Mitochondrial, Dental Enamel, Genome, Mitochondrial, Humans, Incisor, Molecular Sequence Data, Neanderthals, Tooth, Deciduous, Extinction, Biological, Phylogeny, Multidisciplinary, Medicine ,Archaeology ,Western europe ,Genome, Mitochondrial ,Ethnology ,Medicine ,Tooth, Deciduou ,human climate interaction ,Tooth ,Human - Abstract
The Protoaurignacian culture is pivotal to the debate about the timing of the arrival of modern humans in western Europe and the demise of Neandertals. However, which group is responsible for this culture remains uncertain. We investigated dental remains associated with the Protoaurignacian. The lower deciduous incisor from Riparo Bombrini is modern human, based on its morphology. The upper deciduous incisor from Grotta di Fumane contains ancient mitochondrial DNA of a modern human type. These teeth are the oldest human remains in an Aurignacian-related archaeological context, confirming that by 41,000 calendar years before the present, modern humans bearing Protoaurignacian culture spread into southern Europe. Because the last Neandertals date to 41,030 to 39,260 calendar years before the present, we suggest that the Protoaurignacian triggered the demise of Neandertals in this area.
29. The complete sequence and comparative analysis of ape sex chromosomes.
- Author
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Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bornberg-Bauer E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Pond SLK, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McGarvey KM, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweetalana, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler EE, and Phillippy AM
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- Animals, Female, Male, Gorilla gorilla genetics, Hylobatidae genetics, Pan paniscus genetics, Pan troglodytes genetics, Phylogeny, Pongo abelii genetics, Pongo pygmaeus genetics, Telomere genetics, Evolution, Molecular, DNA Copy Number Variations genetics, Humans, Endangered Species, Reference Standards, Hominidae genetics, Hominidae classification, X Chromosome genetics, Y Chromosome genetics
- Abstract
Apes possess two sex chromosomes-the male-specific Y chromosome and the X chromosome, which is present in both males and females. The Y chromosome is crucial for male reproduction, with deletions being linked to infertility
1 . The X chromosome is vital for reproduction and cognition2 . Variation in mating patterns and brain function among apes suggests corresponding differences in their sex chromosomes. However, owing to their repetitive nature and incomplete reference assemblies, ape sex chromosomes have been challenging to study. Here, using the methodology developed for the telomere-to-telomere (T2T) human genome, we produced gapless assemblies of the X and Y chromosomes for five great apes (bonobo (Pan paniscus), chimpanzee (Pan troglodytes), western lowland gorilla (Gorilla gorilla gorilla), Bornean orangutan (Pongo pygmaeus) and Sumatran orangutan (Pongo abelii)) and a lesser ape (the siamang gibbon (Symphalangus syndactylus)), and untangled the intricacies of their evolution. Compared with the X chromosomes, the ape Y chromosomes vary greatly in size and have low alignability and high levels of structural rearrangements-owing to the accumulation of lineage-specific ampliconic regions, palindromes, transposable elements and satellites. Many Y chromosome genes expand in multi-copy families and some evolve under purifying selection. Thus, the Y chromosome exhibits dynamic evolution, whereas the X chromosome is more stable. Mapping short-read sequencing data to these assemblies revealed diversity and selection patterns on sex chromosomes of more than 100 individual great apes. These reference assemblies are expected to inform human evolution and conservation genetics of non-human apes, all of which are endangered species., (© 2024. The Author(s).)- Published
- 2024
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30. More than a decade of genetic research on the Denisovans.
- Author
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Peyrégne S, Slon V, and Kelso J
- Subjects
- Animals, Humans, Biological Evolution, DNA, Genetic Research, Genome, Human, Neanderthals genetics, Hominidae
- Abstract
Denisovans, a group of now extinct humans who lived in Eastern Eurasia in the Middle and Late Pleistocene, were first identified from DNA sequences just over a decade ago. Only ten fragmentary remains from two sites have been attributed to Denisovans based entirely on molecular information. Nevertheless, there has been great interest in using genetic data to understand Denisovans and their place in human history. From the reconstruction of a single high-quality genome, it has been possible to infer their population history, including events of admixture with other human groups. Additionally, the identification of Denisovan DNA in the genomes of present-day individuals has provided insights into the timing and routes of dispersal of ancient modern humans into Asia and Oceania, as well as the contributions of archaic DNA to the physiology of present-day people. In this Review, we synthesize more than a decade of research on Denisovans, reconcile controversies and summarize insights into their population history and phenotype. We also highlight how our growing knowledge about Denisovans has provided insights into our own evolutionary history., (© 2023. Springer Nature Limited.)
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- 2024
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31. The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.
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Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bomberg E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Kosakovsky Pond SL, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweetalana, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler E, and Phillippy AM
- Abstract
Apes possess two sex chromosomes-the male-specific Y and the X shared by males and females. The Y chromosome is crucial for male reproduction, with deletions linked to infertility. The X chromosome carries genes vital for reproduction and cognition. Variation in mating patterns and brain function among great apes suggests corresponding differences in their sex chromosome structure and evolution. However, due to their highly repetitive nature and incomplete reference assemblies, ape sex chromosomes have been challenging to study. Here, using the state-of-the-art experimental and computational methods developed for the telomere-to-telomere (T2T) human genome, we produced gapless, complete assemblies of the X and Y chromosomes for five great apes (chimpanzee, bonobo, gorilla, Bornean and Sumatran orangutans) and a lesser ape, the siamang gibbon. These assemblies completely resolved ampliconic, palindromic, and satellite sequences, including the entire centromeres, allowing us to untangle the intricacies of ape sex chromosome evolution. We found that, compared to the X, ape Y chromosomes vary greatly in size and have low alignability and high levels of structural rearrangements. This divergence on the Y arises from the accumulation of lineage-specific ampliconic regions and palindromes (which are shared more broadly among species on the X) and from the abundance of transposable elements and satellites (which have a lower representation on the X). Our analysis of Y chromosome genes revealed lineage-specific expansions of multi-copy gene families and signatures of purifying selection. In summary, the Y exhibits dynamic evolution, while the X is more stable. Finally, mapping short-read sequencing data from >100 great ape individuals revealed the patterns of diversity and selection on their sex chromosomes, demonstrating the utility of these reference assemblies for studies of great ape evolution. These complete sex chromosome assemblies are expected to further inform conservation genetics of nonhuman apes, all of which are endangered species., Competing Interests: Competing Interests EEE is a scientific advisory board (SAB) member of Variant Bio, Inc. RJO is a scientific advisory board (SAB) member of Colossal Biosciences, Inc. CL is a scientific advisory board (SAB) member of Nabsys, Inc. and Genome Insight, Inc.
- Published
- 2023
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32. Middle Holocene Siberian genomes reveal highly connected gene pools throughout North Asia.
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Wang K, Yu H, Radzevičiūtė R, Kiryushin YF, Tishkin AA, Frolov YV, Stepanova NF, Kiryushin KY, Kungurov AL, Shnaider SV, Tur SS, Tiunov MP, Zubova AV, Pevzner M, Karimov T, Buzhilova A, Slon V, Jeong C, Krause J, and Posth C
- Subjects
- Humans, History, Ancient, Infant, Newborn, Asia, Russia, Siberia, Human Migration, Genetics, Population, Gene Pool, Genome, Human
- Abstract
The peopling history of North Asia remains largely unexplored due to the limited number of ancient genomes analyzed from this region. Here, we report genome-wide data of ten individuals dated to as early as 7,500 years before present from three regions in North Asia, namely Altai-Sayan, Russian Far East, and the Kamchatka Peninsula. Our analysis reveals a previously undescribed Middle Holocene Siberian gene pool in Neolithic Altai-Sayan hunter-gatherers as a genetic mixture between paleo-Siberian and ancient North Eurasian (ANE) ancestries. This distinctive gene pool represents an optimal source for the inferred ANE-related population that contributed to Bronze Age groups from North and Inner Asia, such as Lake Baikal hunter-gatherers, Okunevo-associated pastoralists, and possibly Tarim Basin populations. We find the presence of ancient Northeast Asian (ANA) ancestry-initially described in Neolithic groups from the Russian Far East-in another Neolithic Altai-Sayan individual associated with different cultural features, revealing the spread of ANA ancestry ∼1,500 km further to the west than previously observed. In the Russian Far East, we identify 7,000-year-old individuals that carry Jomon-associated ancestry indicating genetic links with hunter-gatherers in the Japanese archipelago. We also report multiple phases of Native American-related gene flow into northeastern Asia over the past 5,000 years, reaching the Kamchatka Peninsula and central Siberia. Our findings highlight largely interconnected population dynamics throughout North Asia from the Early Holocene onward., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2022 Elsevier Inc. All rights reserved.)
- Published
- 2023
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33. Direct evidence that late Neanderthal occupation precedes a technological shift in southwestern Italy.
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Oxilia G, Bortolini E, Marciani G, Menghi Sartorio JC, Vazzana A, Bettuzzi M, Panetta D, Arrighi S, Badino F, Figus C, Lugli F, Romandini M, Silvestrini S, Sorrentino R, Moroni A, Donadio C, Morigi MP, Slon V, Piperno M, Talamo S, Collina C, and Benazzi S
- Subjects
- Humans, Animals, Italy, Europe, Tooth, Deciduous, Technology, Neanderthals
- Abstract
Objectives: During the middle-to-upper Paleolithic transition (50,000 and 40,000 years ago), interaction between Neanderthals and Homo sapiens varied across Europe. In southern Italy, the association between Homo sapiens fossils and non-Mousterian material culture, as well as the mode and tempo of Neanderthal demise, are still vividly debated. In this research, we focus on the study of two human teeth by using 3D geometric morphometric approaches for a reliable taxonomical attribution as well as obtaining new radiometric dates on the archeological sequence., Material and Methods: This work presents two lower deciduous molars uncovered at Roccia San Sebastiano (Mondragone-Caserta, Italy), stratigraphically associated with Mousterian (RSS1) and Uluzzian (RSS2) artifacts. To obtain a probabilistic attribution of the two RSS teeth to each reference taxa group composed of Neanderthals and Homo sapiens, we performed and compared the performance of three supervised learning algorithms (flexible discriminant analysis, multiadaptive regression splines, and random forest) on both crown and cervical outlines obtained by virtual morphometric methods., Results: We show that RSS1, whose Mousterian context appears more recent than 44,800-44,230 cal BP, can be attributed to a Neanderthal, while RSS2, found in an Uluzzian context that we dated to 42,640-42,380 cal BP, is attributed to Homo sapiens., Discussion: This site yields the most recent direct evidence for a Neanderthal presence in southern Italy and confirms a later shift to upper Paleolithic technology in southwestern Italy compared to the earliest Uluzzian evidence at Grotta del Cavallo (Puglia, Italy)., (© 2022 The Authors. American Journal of Biological Anthropology published by Wiley Periodicals LLC.)
- Published
- 2022
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34. Extended longevity of DNA preservation in Levantine Paleolithic sediments, Sefunim Cave, Israel.
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Slon V, Clark JL, Friesem DE, Orbach M, Porat N, Meyer M, Kandel AW, and Shimelmitz R
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- Animals, Archaeology, Biological Evolution, Caves, Fossils, Humans, Infant, Newborn, Israel, DNA, Ancient, Hyaenidae
- Abstract
Paleogenomic research can elucidate the evolutionary history of human and faunal populations. Although the Levant is a key land-bridge between Africa and Eurasia, thus far, relatively little ancient DNA data has been generated from this region, since DNA degrades faster in warm climates. As sediments can be a source of ancient DNA, we analyzed 33 sediment samples from different sedimentological contexts in the Paleolithic layers of Sefunim Cave (Israel). Four contained traces of ancient Cervidae and Hyaenidae mitochondrial DNA. Dating by optical luminescence and radiocarbon indicates that the DNA comes from layers between 30,000 and 70,000 years old, surpassing theoretical expectations regarding the longevity of DNA deposited in such a warm environment. Both identified taxa are present in the zooarchaeological record of the site but have since gone extinct from the region, and a geoarchaeological study suggests little movement of the sediments after their deposition, lending further support to our findings. We provide details on the local conditions in the cave, which we hypothesize were particularly conducive to the long-term preservation of DNA-information that will be pertinent for future endeavors aimed at recovering ancient DNA from the Levant and other similarly challenging contexts., (© 2022. The Author(s).)
- Published
- 2022
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35. Integrated multidisciplinary ecological analysis from the Uluzzian settlement at the Uluzzo C Rock Shelter, south-eastern Italy.
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Silvestrini S, Romandini M, Marciani G, Arrighi S, Carrera L, Fiorini A, López-García JM, Lugli F, Ranaldo F, Slon V, Tassoni L, Higgins OA, Bortolini E, Curci A, Meyer M, Meyer MC, Oxilia G, Zerboni A, Benazzi S, and Spinapolice EE
- Abstract
The Middle to Upper Palaeolithic transition, between 50 000 and 40 000 years ago, is a period of important ecological and cultural changes. In this framework, the Rock Shelter of Uluzzo C (Apulia, southern Italy) represents an important site due to Late Mousterian and Uluzzian evidence preserved in its stratigraphic sequence. Here, we present the results of a multidisciplinary analysis performed on the materials collected between 2016 and 2018 from the Uluzzian stratigraphic units (SUs) 3, 15 and 17. The analysis involved lithic technology, use-wear, zooarchaeology, ancient DNA of sediments and palaeoproteomics, completed by quartz single-grain optically stimulated luminescence dating of the cave sediments. The lithic assemblage is characterized by a volumetric production and a debitage with no or little management of the convexities (by using the bipolar technique), with the objective to produce bladelets and flakelets. The zooarchaeological study found evidence of butchery activity and of the possible exploitation of marine resources, while drawing a picture of a patchy landscape, composed of open forests and dry open environments surrounding the shelter. Ancient mitochondrial DNA from two mammalian taxa were recovered from the sediments. Preliminary zooarchaeology by mass spectrometry results are consistent with ancient DNA and zooarchaeological taxonomic information, while further palaeoproteomics investigations are ongoing. Our new data from the re-discovery of the Uluzzo C Rock Shelter represent an important contribution to better understand the meaning of the Uluzzian in the context of the Middle/Upper Palaeolithic transition in south-eastern Italy., (© 2021 The Authors. Journal of Quaternary Science Published by John Wiley & Sons Ltd.)
- Published
- 2022
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36. Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments.
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Massilani D, Morley MW, Mentzer SM, Aldeias V, Vernot B, Miller C, Stahlschmidt M, Kozlikin MB, Shunkov MV, Derevianko AP, Conard NJ, Wurz S, Henshilwood CS, Vasquez J, Essel E, Nagel S, Richter J, Nickel B, Roberts RG, Pääbo S, Slon V, Goldberg P, and Meyer M
- Subjects
- Animals, Caves, DNA, Ancient, Fossils, Hominidae genetics, Neanderthals genetics
- Abstract
Ancient DNA recovered from Pleistocene sediments represents a rich resource for the study of past hominin and environmental diversity. However, little is known about how DNA is preserved in sediments and the extent to which it may be translocated between archaeological strata. Here, we investigate DNA preservation in 47 blocks of resin-impregnated archaeological sediment collected over the last four decades for micromorphological analyses at 13 prehistoric sites in Europe, Asia, Africa, and North America and show that such blocks can preserve DNA of hominins and other mammals. Extensive microsampling of sediment blocks from Denisova Cave in the Altai Mountains reveals that the taxonomic composition of mammalian DNA differs drastically at the millimeter-scale and that DNA is concentrated in small particles, especially in fragments of bone and feces (coprolites), suggesting that these are substantial sources of DNA in sediments. Three microsamples taken in close proximity in one of the blocks yielded Neanderthal DNA from at least two male individuals closely related to Denisova 5 , a Neanderthal toe bone previously recovered from the same layer. Our work indicates that DNA can remain stably localized in sediments over time and provides a means of linking genetic information to the archaeological and ecological records on a microstratigraphic scale., Competing Interests: The authors declare no competing interest., (Copyright © 2021 the Author(s). Published by PNAS.)
- Published
- 2022
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37. Ethics of DNA research on human remains: five globally applicable guidelines.
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Alpaslan-Roodenberg S, Anthony D, Babiker H, Bánffy E, Booth T, Capone P, Deshpande-Mukherjee A, Eisenmann S, Fehren-Schmitz L, Frachetti M, Fujita R, Frieman CJ, Fu Q, Gibbon V, Haak W, Hajdinjak M, Hofmann KP, Holguin B, Inomata T, Kanzawa-Kiriyama H, Keegan W, Kelso J, Krause J, Kumaresan G, Kusimba C, Kusimba S, Lalueza-Fox C, Llamas B, MacEachern S, Mallick S, Matsumura H, Morales-Arce AY, Matuzeviciute GM, Mushrif-Tripathy V, Nakatsuka N, Nores R, Ogola C, Okumura M, Patterson N, Pinhasi R, Prasad SPR, Prendergast ME, Punzo JL, Reich D, Sawafuji R, Sawchuk E, Schiffels S, Sedig J, Shnaider S, Sirak K, Skoglund P, Slon V, Snow M, Soressi M, Spriggs M, Stockhammer PW, Szécsényi-Nagy A, Thangaraj K, Tiesler V, Tobler R, Wang CC, Warinner C, Yasawardene S, and Zahir M
- Subjects
- American Indian or Alaska Native, Anthropology ethics, Archaeology ethics, Community-Institutional Relations, Humans, Indigenous Peoples, Stakeholder Participation, Translations, Cadaver, DNA, Ancient analysis, Guidelines as Topic, Human Genetics ethics, Internationality, Molecular Biology ethics
- Abstract
We are a group of archaeologists, anthropologists, curators and geneticists representing diverse global communities and 31 countries. All of us met in a virtual workshop dedicated to ethics in ancient DNA research held in November 2020. There was widespread agreement that globally applicable ethical guidelines are needed, but that recent recommendations grounded in discussion about research on human remains from North America are not always generalizable worldwide. Here we propose the following globally applicable guidelines, taking into consideration diverse contexts. These hold that: (1) researchers must ensure that all regulations were followed in the places where they work and from which the human remains derived; (2) researchers must prepare a detailed plan prior to beginning any study; (3) researchers must minimize damage to human remains; (4) researchers must ensure that data are made available following publication to allow critical re-examination of scientific findings; and (5) researchers must engage with other stakeholders from the beginning of a study and ensure respect and sensitivity to stakeholder perspectives. We commit to adhering to these guidelines and expect they will promote a high ethical standard in DNA research on human remains going forward., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2021
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38. Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave.
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Zavala EI, Jacobs Z, Vernot B, Shunkov MV, Kozlikin MB, Derevianko AP, Essel E, de Fillipo C, Nagel S, Richter J, Romagné F, Schmidt A, Li B, O'Gorman K, Slon V, Kelso J, Pääbo S, Roberts RG, and Meyer M
- Subjects
- Animals, Archaeology, DNA, Mitochondrial analysis, DNA, Mitochondrial genetics, Fossils, History, Ancient, Neanderthals genetics, Siberia, Caves, DNA, Ancient analysis, Geologic Sediments chemistry, Hominidae genetics
- Abstract
Denisova Cave in southern Siberia is the type locality of the Denisovans, an archaic hominin group who were related to Neanderthals
1-4 . The dozen hominin remains recovered from the deposits also include Neanderthals5,6 and the child of a Neanderthal and a Denisovan7 , which suggests that Denisova Cave was a contact zone between these archaic hominins. However, uncertainties persist about the order in which these groups appeared at the site, the timing and environmental context of hominin occupation, and the association of particular hominin groups with archaeological assemblages5,8-11 . Here we report the analysis of DNA from 728 sediment samples that were collected in a grid-like manner from layers dating to the Pleistocene epoch. We retrieved ancient faunal and hominin mitochondrial (mt)DNA from 685 and 175 samples, respectively. The earliest evidence for hominin mtDNA is of Denisovans, and is associated with early Middle Palaeolithic stone tools that were deposited approximately 250,000 to 170,000 years ago; Neanderthal mtDNA first appears towards the end of this period. We detect a turnover in the mtDNA of Denisovans that coincides with changes in the composition of faunal mtDNA, and evidence that Denisovans and Neanderthals occupied the site repeatedly-possibly until, or after, the onset of the Initial Upper Palaeolithic at least 45,000 years ago, when modern human mtDNA is first recorded in the sediments., (© 2021. The Author(s).)- Published
- 2021
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39. Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments.
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Vernot B, Zavala EI, Gómez-Olivencia A, Jacobs Z, Slon V, Mafessoni F, Romagné F, Pearson A, Petr M, Sala N, Pablos A, Aranburu A, de Castro JMB, Carbonell E, Li B, Krajcarz MT, Krivoshapkin AI, Kolobova KA, Kozlikin MB, Shunkov MV, Derevianko AP, Viola B, Grote S, Essel E, Herráez DL, Nagel S, Nickel B, Richter J, Schmidt A, Peter B, Kelso J, Roberts RG, Arsuaga JL, and Meyer M
- Subjects
- Animals, Caves chemistry, DNA, Mitochondrial analysis, DNA, Mitochondrial isolation & purification, Geologic Sediments chemistry, Phylogeny, Population genetics, Sequence Analysis, DNA, Siberia, Spain, Cell Nucleus genetics, DNA, Mitochondrial genetics, Neanderthals classification, Neanderthals genetics
- Abstract
Bones and teeth are important sources of Pleistocene hominin DNA, but are rarely recovered at archaeological sites. Mitochondrial DNA (mtDNA) has been retrieved from cave sediments but provides limited value for studying population relationships. We therefore developed methods for the enrichment and analysis of nuclear DNA from sediments and applied them to cave deposits in western Europe and southern Siberia dated to between 200,000 and 50,000 years ago. We detected a population replacement in northern Spain about 100,000 years ago, which was accompanied by a turnover of mtDNA. We also identified two radiation events in Neanderthal history during the early part of the Late Pleistocene. Our work lays the ground for studying the population history of ancient hominins from trace amounts of nuclear DNA in sediments., (Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2021
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40. 3D virtual reconstruction and quantitative assessment of the human intervertebral disc's annulus fibrosus: a DTI tractography study.
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Stein D, Assaf Y, Dar G, Cohen H, Slon V, Kedar E, Medlej B, Abbas J, Hay O, Barazany D, and Hershkovitz I
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- Humans, Image Processing, Computer-Assisted, Magnetic Resonance Imaging methods, Microscopy, Atomic Force, Surgery, Computer-Assisted methods, Annulus Fibrosus surgery, Imaging, Three-Dimensional, Intervertebral Disc Degeneration diagnosis, Intervertebral Disc Degeneration surgery, Intervertebral Disc Displacement diagnosis, Intervertebral Disc Displacement surgery, Plastic Surgery Procedures
- Abstract
The intervertebral disc's (IVD) annulus fibrosus (AF) retains the hydrostatic pressure of the nucleus pulposus (NP), controls the range of motion, and maintains the integrity of the motion segment. The microstructure of the AF is not yet fully understood and quantitative characterization is lacking, leaving a caveat in modern medicine's ability to prevent and treat disc failure (e.g., disc herniation). In this study, we show a reconstruction of the 3D microstructure of the fibers that constitute the AF via MRI diffusion tensor imaging (DTI) followed by fiber tracking. A quantitative analysis presents an anisotropic structure with significant architectural differences among the annuli along the width of the fibrous belt. These findings indicate that the outer annuli's construction reinforces the IVD while providing a sufficient degree of motion. Our findings also suggest an increased role of the outer annuli in IVD nourishment.
- Published
- 2021
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41. Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau.
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Zhang D, Xia H, Chen F, Li B, Slon V, Cheng T, Yang R, Jacobs Z, Dai Q, Massilani D, Shen X, Wang J, Feng X, Cao P, Yang MA, Yao J, Yang J, Madsen DB, Han Y, Ping W, Liu F, Perreault C, Chen X, Meyer M, Kelso J, Pääbo S, and Fu Q
- Subjects
- Animals, DNA, Mitochondrial genetics, Humans, Phylogeny, Tibet, Caves, DNA, Ancient isolation & purification, Geologic Sediments chemistry, Hominidae classification, Hominidae genetics
- Abstract
A late Middle Pleistocene mandible from Baishiya Karst Cave (BKC) on the Tibetan Plateau has been inferred to be from a Denisovan, an Asian hominin related to Neanderthals, on the basis of an amino acid substitution in its collagen. Here we describe the stratigraphy, chronology, and mitochondrial DNA extracted from the sediments in BKC. We recover Denisovan mitochondrial DNA from sediments deposited ~100 thousand and ~60 thousand years ago (ka) and possibly as recently as ~45 ka. The long-term occupation of BKC by Denisovans suggests that they may have adapted to life at high altitudes and may have contributed such adaptations to modern humans on the Tibetan Plateau., (Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2020
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42. A high-coverage Neandertal genome from Chagyrskaya Cave.
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Mafessoni F, Grote S, de Filippo C, Slon V, Kolobova KA, Viola B, Markin SV, Chintalapati M, Peyrégne S, Skov L, Skoglund P, Krivoshapkin AI, Derevianko AP, Meyer M, Kelso J, Peter B, Prüfer K, and Pääbo S
- Subjects
- Animals, Biological Evolution, Female, Fossils, Gene Expression Regulation, Genetic Variation, Humans, Inbreeding, Population Density, Russia, Genome, Neanderthals genetics
- Abstract
We sequenced the genome of a Neandertal from Chagyrskaya Cave in the Altai Mountains, Russia, to 27-fold genomic coverage. We show that this Neandertal was a female and that she was more related to Neandertals in western Eurasia [Prüfer et al., Science 358, 655-658 (2017); Hajdinjak et al., Nature 555, 652-656 (2018)] than to Neandertals who lived earlier in Denisova Cave [Prüfer et al., Nature 505, 43-49 (2014)], which is located about 100 km away. About 12.9% of the Chagyrskaya genome is spanned by homozygous regions that are between 2.5 and 10 centiMorgans (cM) long. This is consistent with the fact that Siberian Neandertals lived in relatively isolated populations of less than 60 individuals. In contrast, a Neandertal from Europe, a Denisovan from the Altai Mountains, and ancient modern humans seem to have lived in populations of larger sizes. The availability of three Neandertal genomes of high quality allows a view of genetic features that were unique to Neandertals and that are likely to have been at high frequency among them. We find that genes highly expressed in the striatum in the basal ganglia of the brain carry more amino-acid-changing substitutions than genes expressed elsewhere in the brain, suggesting that the striatum may have evolved unique functions in Neandertals., Competing Interests: The authors declare no competing interest., (Copyright © 2020 the Author(s). Published by PNAS.)
- Published
- 2020
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43. Micro Methods for Megafauna: Novel Approaches to Late Quaternary Extinctions and Their Contributions to Faunal Conservation in the Anthropocene.
- Author
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Swift JA, Bunce M, Dortch J, Douglass K, Faith JT, Fellows Yates JA, Field J, Haberle SG, Jacob E, Johnson CN, Lindsey E, Lorenzen ED, Louys J, Miller G, Mychajliw AM, Slon V, Villavicencio NA, Waters MR, Welker F, Wood R, Petraglia M, Boivin N, and Roberts P
- Abstract
Drivers of Late Quaternary megafaunal extinctions are relevant to modern conservation policy in a world of growing human population density, climate change, and faunal decline. Traditional debates tend toward global solutions, blaming either dramatic climate change or dispersals of Homo sapiens to new regions. Inherent limitations to archaeological and paleontological data sets often require reliance on scant, poorly resolved lines of evidence. However, recent developments in scientific technologies allow for more local, context-specific approaches. In the present article, we highlight how developments in five such methodologies (radiocarbon approaches, stable isotope analysis, ancient DNA, ancient proteomics, microscopy) have helped drive detailed analysis of specific megafaunal species, their particular ecological settings, and responses to new competitors or predators, climate change, and other external phenomena. The detailed case studies of faunal community composition, extinction chronologies, and demographic trends enabled by these methods examine megafaunal extinctions at scales appropriate for practical understanding of threats against particular species in their habitats today., (© The Author(s) 2019. Published by Oxford University Press on behalf of the American Institute of Biological Sciences.)
- Published
- 2019
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44. The formation of human populations in South and Central Asia.
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Narasimhan VM, Patterson N, Moorjani P, Rohland N, Bernardos R, Mallick S, Lazaridis I, Nakatsuka N, Olalde I, Lipson M, Kim AM, Olivieri LM, Coppa A, Vidale M, Mallory J, Moiseyev V, Kitov E, Monge J, Adamski N, Alex N, Broomandkhoshbacht N, Candilio F, Callan K, Cheronet O, Culleton BJ, Ferry M, Fernandes D, Freilich S, Gamarra B, Gaudio D, Hajdinjak M, Harney É, Harper TK, Keating D, Lawson AM, Mah M, Mandl K, Michel M, Novak M, Oppenheimer J, Rai N, Sirak K, Slon V, Stewardson K, Zalzala F, Zhang Z, Akhatov G, Bagashev AN, Bagnera A, Baitanayev B, Bendezu-Sarmiento J, Bissembaev AA, Bonora GL, Chargynov TT, Chikisheva T, Dashkovskiy PK, Derevianko A, Dobeš M, Douka K, Dubova N, Duisengali MN, Enshin D, Epimakhov A, Fribus AV, Fuller D, Goryachev A, Gromov A, Grushin SP, Hanks B, Judd M, Kazizov E, Khokhlov A, Krygin AP, Kupriyanova E, Kuznetsov P, Luiselli D, Maksudov F, Mamedov AM, Mamirov TB, Meiklejohn C, Merrett DC, Micheli R, Mochalov O, Mustafokulov S, Nayak A, Pettener D, Potts R, Razhev D, Rykun M, Sarno S, Savenkova TM, Sikhymbaeva K, Slepchenko SM, Soltobaev OA, Stepanova N, Svyatko S, Tabaldiev K, Teschler-Nicola M, Tishkin AA, Tkachev VV, Vasilyev S, Velemínský P, Voyakin D, Yermolayeva A, Zahir M, Zubkov VS, Zubova A, Shinde VS, Lalueza-Fox C, Meyer M, Anthony D, Boivin N, Thangaraj K, Kennett DJ, Frachetti M, Pinhasi R, and Reich D
- Subjects
- Asia, Central, Asia, Southeastern, Gene Flow, History, Ancient, Humans, Iran, Sequence Analysis, DNA, Asian People genetics, Farms history, Human Migration history, Population genetics
- Abstract
By sequencing 523 ancient humans, we show that the primary source of ancestry in modern South Asians is a prehistoric genetic gradient between people related to early hunter-gatherers of Iran and Southeast Asia. After the Indus Valley Civilization's decline, its people mixed with individuals in the southeast to form one of the two main ancestral populations of South Asia, whose direct descendants live in southern India. Simultaneously, they mixed with descendants of Steppe pastoralists who, starting around 4000 years ago, spread via Central Asia to form the other main ancestral population. The Steppe ancestry in South Asia has the same profile as that in Bronze Age Eastern Europe, tracking a movement of people that affected both regions and that likely spread the distinctive features shared between Indo-Iranian and Balto-Slavic languages., (Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2019
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45. Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe.
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Peyrégne S, Slon V, Mafessoni F, de Filippo C, Hajdinjak M, Nagel S, Nickel B, Essel E, Le Cabec A, Wehrberger K, Conard NJ, Kind CJ, Posth C, Krause J, Abrams G, Bonjean D, Di Modica K, Toussaint M, Kelso J, Meyer M, Pääbo S, and Prüfer K
- Subjects
- Animals, Cell Lineage genetics, Europe, Evolution, Molecular, Fossils, Genome genetics, Germany, Mitochondria genetics, Cell Nucleus genetics, DNA genetics, Neanderthals genetics
- Abstract
Little is known about the population history of Neandertals over the hundreds of thousands of years of their existence. We retrieved nuclear genomic sequences from two Neandertals, one from Hohlenstein-Stadel Cave in Germany and the other from Scladina Cave in Belgium, who lived around 120,000 years ago. Despite the deeply divergent mitochondrial lineage present in the former individual, both Neandertals are genetically closer to later Neandertals from Europe than to a roughly contemporaneous individual from Siberia. That the Hohlenstein-Stadel and Scladina individuals lived around the time of their most recent common ancestor with later Neandertals suggests that all later Neandertals trace at least part of their ancestry back to these early European Neandertals.
- Published
- 2019
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46. Osteophytes in the Cervical Vertebral Bodies (C3-C7)-Demographical Perspectives.
- Author
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Ezra D, Hershkovitz I, Salame K, Alperovitch-Najenson D, and Slon V
- Subjects
- Adult, Biomechanical Phenomena, Demography, Female, Humans, Male, Middle Aged, Range of Motion, Articular, Sex Factors, Young Adult, Cervical Vertebrae physiopathology, Ethnicity statistics & numerical data, Osteophyte physiopathology
- Abstract
Vertebral osteophytes are an age-dependent manifestation of degenerative changes in the spine. We aimed to determine the prevalence and severity of cervical osteophytosis in a large study population. To do so, we developed a grading system for osteophytosis, enabling the assessment of their presence and severity in the cervical spine, and applied it to the analysis of dried cervical vertebral bodies (C3-C7) from 273 individuals. Statistical analyses were carried out per motion segment, while testing for the effect of age, sex, and ethnicity. The highest prevalence of osteophytes was found in motion segment C5/C6 (48.2%), followed by C4/C5 (44.1%), and last C6/C7 and C3/C4 (40.5%). Severe osteophytes are most commonly seen in motion segment C5/C6. In all motion segments, the inferior discal surface of the upper vertebra manifests more osteophytes than the superior discal surface of the lower one. Osteophytes prevalence is sex-dependent only in the upper cervical vertebrae (C3-C4), and age- and ethnicity-dependent for all vertebrae. Anat Rec, 302:226-231, 2019. © 2018 Wiley Periodicals, Inc., (© 2018 Wiley Periodicals, Inc.)
- Published
- 2019
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- View/download PDF
47. The torg ratio of C3-C7 in African Americans and European Americans: A skeletal study.
- Author
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Ezra D, Slon V, Kedar E, Masharawi Y, Salame K, Alperovitch-Najenson D, and Hershkovitz I
- Subjects
- Black or African American statistics & numerical data, Age Factors, Female, Humans, Male, Reference Values, Sex Factors, White People statistics & numerical data, Cervical Vertebrae anatomy & histology
- Abstract
The ratio between the sagittal diameter of the spinal canal and the sagittal diameter of the vertebral body, known as the "Torg ratio", is often used to test for spinal canal narrowing. Here, we investigate this ratio in a large population, consisting of two ethnicities, both sexes and three age groups. Measurements were taken on the dry cervical verterbrae (C3-C7) of 277 individuals using a digital apparatus allowing for the recording of 3D coordinates of a set of landmarks on the vertebral body. Vertebral body and vertebral foramen lengths were compared across the different subgroups. Vertebral body and vertebral foramen lengths differ significantly between males and females and between African Americans and European Americans. With age, the vertebral body length increases while the foramen length does not undergo significant changes. These anatomical differences are reflected in differences in the Torg ratio calculated for the different subgroups. In conclusion, our findings suggest that a hard cutoff on the Torg ratio used to define a pathological narrowing of the cervical spine should be adapted to the population the patients come from. Clin. Anat. 32: 84-89, 2019. © 2018 Wiley Periodicals, Inc., (© 2018 Wiley Periodicals, Inc.)
- Published
- 2019
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- View/download PDF
48. Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave.
- Author
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Douka K, Slon V, Jacobs Z, Ramsey CB, Shunkov MV, Derevianko AP, Mafessoni F, Kozlikin MB, Li B, Grün R, Comeskey D, Devièse T, Brown S, Viola B, Kinsley L, Buckley M, Meyer M, Roberts RG, Pääbo S, Kelso J, and Higham T
- Subjects
- Animals, Bayes Theorem, DNA, Mitochondrial genetics, Deer, Femur chemistry, Geologic Sediments chemistry, History, Ancient, Humans, Neanderthals genetics, Oxygen Isotopes, Siberia, Time Factors, Tooth chemistry, Caves, Fossils, Hominidae genetics, Radiometric Dating
- Abstract
Denisova Cave in the Siberian Altai (Russia) is a key site for understanding the complex relationships between hominin groups that inhabited Eurasia in the Middle and Late Pleistocene epoch. DNA sequenced from human remains found at this site has revealed the presence of a hitherto unknown hominin group, the Denisovans
1,2 , and high-coverage genomes from both Neanderthal and Denisovan fossils provide evidence for admixture between these two populations3 . Determining the age of these fossils is important if we are to understand the nature of hominin interaction, and aspects of their cultural and subsistence adaptations. Here we present 50 radiocarbon determinations from the late Middle and Upper Palaeolithic layers of the site. We also report three direct dates for hominin fragments and obtain a mitochondrial DNA sequence for one of them. We apply a Bayesian age modelling approach that combines chronometric (radiocarbon, uranium series and optical ages), stratigraphic and genetic data to calculate probabilistically the age of the human fossils at the site. Our modelled estimate for the age of the oldest Denisovan fossil suggests that this group was present at the site as early as 195,000 years ago (at 95.4% probability). All Neanderthal fossils-as well as Denisova 11, the daughter of a Neanderthal and a Denisovan4 -date to between 80,000 and 140,000 years ago. The youngest Denisovan dates to 52,000-76,000 years ago. Direct radiocarbon dating of Upper Palaeolithic tooth pendants and bone points yielded the earliest evidence for the production of these artefacts in northern Eurasia, between 43,000 and 49,000 calibrated years before present (taken as AD 1950). On the basis of current archaeological evidence, it may be assumed that these artefacts are associated with the Denisovan population. It is not currently possible to determine whether anatomically modern humans were involved in their production, as modern-human fossil and genetic evidence of such antiquity has not yet been identified in the Altai region.- Published
- 2019
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49. The genome of the offspring of a Neanderthal mother and a Denisovan father.
- Author
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Slon V, Mafessoni F, Vernot B, de Filippo C, Grote S, Viola B, Hajdinjak M, Peyrégne S, Nagel S, Brown S, Douka K, Higham T, Kozlikin MB, Shunkov MV, Derevianko AP, Kelso J, Meyer M, Prüfer K, and Pääbo S
- Subjects
- Alleles, Animals, Fathers, Female, Gene Flow genetics, Genome, Genomics, History, Ancient, Humans, Male, Mothers, Time Factors, Hominidae genetics, Hybridization, Genetic genetics, Neanderthals genetics
- Abstract
Neanderthals and Denisovans are extinct groups of hominins that separated from each other more than 390,000 years ago
1,2 . Here we present the genome of 'Denisova 11', a bone fragment from Denisova Cave (Russia)3 and show that it comes from an individual who had a Neanderthal mother and a Denisovan father. The father, whose genome bears traces of Neanderthal ancestry, came from a population related to a later Denisovan found in the cave4-6 . The mother came from a population more closely related to Neanderthals who lived later in Europe2,7 than to an earlier Neanderthal found in Denisova Cave8 , suggesting that migrations of Neanderthals between eastern and western Eurasia occurred sometime after 120,000 years ago. The finding of a first-generation Neanderthal-Denisovan offspring among the small number of archaic specimens sequenced to date suggests that mixing between Late Pleistocene hominin groups was common when they met.- Published
- 2018
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50. The earliest modern humans outside Africa.
- Author
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Hershkovitz I, Weber GW, Quam R, Duval M, Grün R, Kinsley L, Ayalon A, Bar-Matthews M, Valladas H, Mercier N, Arsuaga JL, Martinón-Torres M, Bermúdez de Castro JM, Fornai C, Martín-Francés L, Sarig R, May H, Krenn VA, Slon V, Rodríguez L, García R, Lorenzo C, Carretero JM, Frumkin A, Shahack-Gross R, Bar-Yosef Mayer DE, Cui Y, Wu X, Peled N, Groman-Yaroslavski I, Weissbrod L, Yeshurun R, Tsatskin A, Zaidner Y, and Weinstein-Evron M
- Subjects
- Africa, Caves, Dentition, Fossils, History, Ancient, Humans, Israel, Maxilla, Technology history, Biological Evolution, Human Migration history
- Abstract
To date, the earliest modern human fossils found outside of Africa are dated to around 90,000 to 120,000 years ago at the Levantine sites of Skhul and Qafzeh. A maxilla and associated dentition recently discovered at Misliya Cave, Israel, was dated to 177,000 to 194,000 years ago, suggesting that members of the Homo sapiens clade left Africa earlier than previously thought. This finding changes our view on modern human dispersal and is consistent with recent genetic studies, which have posited the possibility of an earlier dispersal of Homo sapiens around 220,000 years ago. The Misliya maxilla is associated with full-fledged Levallois technology in the Levant, suggesting that the emergence of this technology is linked to the appearance of Homo sapiens in the region, as has been documented in Africa., (Copyright © 2018, The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2018
- Full Text
- View/download PDF
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