80 results on '"Simonelig, M."'
Search Results
2. I elements and the Drosophila genome
- Author
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Bucheton, A., Vaury, C., Chaboissier, M. -C., Abad, P., Pélisson, A., and Simonelig, M.
- Published
- 1992
- Full Text
- View/download PDF
3. I elements and the Drosophila genome
- Author
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Bucheton, A., primary, Vaury, C., additional, Chaboissier, M.-C., additional, Abad, P., additional, Pélisson, A., additional, and Simonelig, M., additional
- Published
- 1993
- Full Text
- View/download PDF
4. Measurement of mRNA Poly(A) Tail Lengths in Drosophila Female Germ Cells and Germ-Line Stem Cells
- Author
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Chartier, A, Joly, W, Simonelig, M, Institut de génétique humaine ( IGH ), Université de Montpellier ( UM ) -Centre National de la Recherche Scientifique ( CNRS ), Institut de génétique humaine (IGH), and Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV.GEN]Life Sciences [q-bio]/Genetics ,[ SDV ] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,Stem Cells ,Ovary ,Polyadenylation ,Gene Expression Regulation ,Animals ,Drosophila ,Female ,RNA, Messenger ,Stem Cell Niche ,Poly A ,[ SDV.GEN ] Life Sciences [q-bio]/Genetics ,ComputingMilieux_MISCELLANEOUS - Abstract
mRNA regulation by poly(A) tail length variations plays an important role in many developmental processes. Recent advances have shown that, in particular, deadenylation (the shortening of mRNA poly(A) tails) is essential for germ-line stem cell biology in the Drosophila ovary. Therefore, a rapid and accurate method to analyze poly(A) tail lengths of specific mRNAs in this tissue is valuable. Several methods of poly(A) test (PAT) assays have been reported to measure mRNA poly(A) tail lengths in vivo. Here, we describe two of these methods (PAT and ePAT) that we have adapted for Drosophila ovarian germ cells and germ-line stem cells.
- Published
- 2017
5. A cytoplasmic function for the nuclear poly(a) binding protein PABP2, essentiazl for poly(A) tail length control and early development in drosophila
- Author
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Benoit, B., Mitou, G., Chartier, A., Temme, C., Zaessinger, S., Wahle, E., Busseau, I., Simonelig, M., Institut de génétique humaine (IGH), and Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT] - Published
- 2005
6. G.O.5
- Author
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Trollet, C., primary, Chartier, A., additional, Klein, P., additional, Barbezier, N., additional, Gidaro, T., additional, Casas, F., additional, Carberry, S., additional, Dowling, P., additional, Maynadier, L., additional, Dickson, G., additional, Mouly, V., additional, Ohlendieck, K., additional, Butler-Browne, G., additional, and Simonelig, M., additional
- Published
- 2014
- Full Text
- View/download PDF
7. Drosophila P element: transposition, regulation and evolution
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Coen, D., Lemaitre, B., Delattre, M., Quesneville, H., Ronsseray, S., Simonelig, M., Higuet, D., Lehmann, M., Montchamp, C., Nouaud, D., Coen, D., Lemaitre, B., Delattre, M., Quesneville, H., Ronsseray, S., Simonelig, M., Higuet, D., Lehmann, M., Montchamp, C., and Nouaud, D.
- Published
- 2010
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- View/download PDF
8. G.O.5: Mitochondrial dysfunction reveals defective poly(A) tail regulation of specific mRNAs as a primary defect in oculopharyngeal muscular dystrophy
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Trollet, C., Chartier, A., Klein, P., Barbezier, N., Gidaro, T., Casas, F., Carberry, S., Dowling, P., Maynadier, L., Dickson, G., Mouly, V., Ohlendieck, K., Butler-Browne, G., and Simonelig, M.
- Published
- 2014
- Full Text
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9. Homology with Saccharomyces cerevisiae RNA14 suggests that phenotypic suppression in Drosophila melanogaster by suppressor of forked occurs at the level of RNA stability.
- Author
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Mitchelson, A, primary, Simonelig, M, additional, Williams, C, additional, and O'Hare, K, additional
- Published
- 1993
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10. A P element of Scaptomyza pallida is active in Drosophila melanogaster.
- Author
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Simonelig, M, primary and Anxolabéhère, D, additional
- Published
- 1991
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11. The Drosophila poly(A)-binding protein II is ubiquitous throughout Drosophila development and has the same function in mRNA polyadenylation as its bovine homolog in vitro.
- Author
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Benoit, B, Nemeth, A, Aulner, N, Kühn, U, Simonelig, M, Wahle, E, and Bourbon, H M
- Abstract
The poly(A)-binding protein II (PABP2) is one of the polyadenylation factors required for proper 3'-end formation of mammalian mRNAs. We have cloned Pabp2, the gene encoding the Drosophila homolog of mammalian PABP2, by using a molecular screen to identify new Drosophila proteins with RNP-type RNA-binding domains. Sequence comparison of PABP2 from Drosophila and mammals indicates that the most conserved domains are the RNA-binding domain and a coiled-coil like domain which could be involved in protein-protein interactions. Pabp2 produces four mRNAs which result from utilization of alternative poly(A) sites and encode the same protein. Using an antibody raised against Drosophila PABP2, we show that the protein accumulates in nuclei of all transcriptionally active cells throughout Drosophila development. This is consistent with a general role of PABP2 in mRNA polyadenylation. Analysis of Drosophila PABP2 function in a reconstituted mammalian polyadenylation system shows that the protein has the same functions as its bovine homolog in vitro : it stimulates poly(A) polymerase and is able to control poly(A) tail length.
- Published
- 1999
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12. The suppressor of forked gene of Drosophila, which encodes a homologue of human CstF-77K involved in mRNA 3'-end processing, is required for progression through mitosis
- Author
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Audibert, A. and Simonelig, M.
- Published
- 1999
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13. The suppressor of forked protein of Drosophila, a homologue of the human 77K protein required for mRNA 3'-end formation, accumulates in mitotically-active cells
- Author
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Audibert, A., Juge, F., and Simonelig, M.
- Published
- 1998
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14. Transposable and nontransposable elements similar to the I factor involved in inducer-reactive (IR) hybrid dysgenesis in Drosophila melanogaster coexist in various Drosophila species.
- Author
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Simonelig, M, Bazin, C, Pelisson, A, and Bucheton, A
- Abstract
The I factor is a transposable element controlling inducer-reactive (IR) hybrid dysgenesis in Drosophila melanogaster, which occurs when males from the class of inducer strains are crossed with females from the class of reactive strains. Inducer strains contain several copies of the complete 5.4-kilobase (kb) I factor at various sites on the chromosomal arms; reactive strains contain no complete I factor. Incomplete and defective I elements occur at constant locations in pericentromeric heterochromatin of both types of strains. The 5.4-kb I factors transpose, whereas incomplete I elements do not transpose. The constant location of defective I elements in all strains indicates that they were in the genome before the spread of D. melanogaster throughout the world. Sequences homologous to I occur in other Drosophila species, and their distribution correlates with the phylogenetic relationships between species. We have studied the organization of I homologues in Drosophila simulans and Drosophila teissieri. These species seem to contain both transposable I elements, even though their structure may differ from that of the 5.4-kb I factors of the inducer strains of D. melanogaster, and nontransposable I elements, which are always at the same place in the genome when different stocks of the same species are compared. These results suggest that both mobile and nonmobile I elements are very old components of the Drosophilidae genome.
- Published
- 1988
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15. Intraspecific and interspecific distribution of sequences homologous to the I factor involved in IR hybrid dysgenesis in Drosophila melanogaster
- Author
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Simonelig, M., Abad, Pierre, Busseau, I., Pelisson, Antoine, Vaury, C., Bucheton, A., Station de recherches de nématologie et de génétique moléculaire des invertébrés, Institut National de la Recherche Agronomique (INRA), and ProdInra, Migration
- Subjects
[SDV] Life Sciences [q-bio] ,DYSGENESIE HYBRIDE ,[SDV]Life Sciences [q-bio] - Published
- 1987
16. Drosophila P element: transposition, regulation and evolution
- Author
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Coen, D., Lemaitre, B., Delattre, M., Quesneville, H., Ronsseray, S., Simonelig, M., Higuet, D., Lehmann, M., Montchamp, C., and Nouaud, D.
- Subjects
Gene Expression Regulation ,Evolution ,DNA Transposable Elements
17. G.P.9 05 Histopathological features of Drosophila model of oculopharyngeal muscular dystrophy
- Author
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van der Sluijs, B.M., Ter Laak, H., Eshuis, L., Verrijp, K., Chartier, A., Simonelig, M., van Engelen, B.G.M., and Lammens, M.
- Published
- 2006
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18. piRNAs are regulators of metabolic reprogramming in stem cells.
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Rojas-Ríos P, Chartier A, Enjolras C, Cremaschi J, Garret C, Boughlita A, Ramat A, and Simonelig M
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- Animals, Female, RNA, Messenger metabolism, RNA, Messenger genetics, Cell Differentiation, Cellular Reprogramming genetics, 5' Untranslated Regions, Oogonial Stem Cells metabolism, Oogonial Stem Cells cytology, Stem Cells metabolism, Stem Cells cytology, Metabolic Reprogramming, Piwi-Interacting RNA, Glycolysis genetics, Drosophila Proteins metabolism, Drosophila Proteins genetics, RNA, Small Interfering metabolism, RNA, Small Interfering genetics, Peptide Initiation Factors metabolism, Peptide Initiation Factors genetics, Drosophila melanogaster metabolism, Drosophila melanogaster genetics
- Abstract
Stem cells preferentially use glycolysis instead of oxidative phosphorylation and this metabolic rewiring plays an instructive role in their fate; however, the underlying molecular mechanisms remain largely unexplored. PIWI-interacting RNAs (piRNAs) and PIWI proteins have essential functions in a range of adult stem cells across species. Here, we show that piRNAs and the PIWI protein Aubergine (Aub) are instrumental in activating glycolysis in Drosophila female germline stem cells (GSCs). Higher glycolysis is required for GSC self-renewal and aub loss-of-function induces a metabolic switch in GSCs leading to their differentiation. Aub directly binds glycolytic mRNAs and Enolase mRNA regulation by Aub depends on its 5'UTR. Furthermore, mutations of a piRNA target site in Enolase 5'UTR lead to GSC loss. These data reveal an Aub/piRNA function in translational activation of glycolytic mRNAs in GSCs, and pinpoint a mechanism of regulation of metabolic reprogramming in stem cells based on small RNAs., (© 2024. The Author(s).)
- Published
- 2024
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19. Spatial organization of translation and translational repression in two phases of germ granules.
- Author
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Ramat A, Haidar A, Garret C, and Simonelig M
- Subjects
- Animals, Germ Cells metabolism, RNA-Binding Proteins metabolism, RNA-Binding Proteins genetics, Single Molecule Imaging, Drosophila metabolism, Drosophila genetics, Biomolecular Condensates metabolism, Protein Biosynthesis, Drosophila Proteins metabolism, Drosophila Proteins genetics, Cytoplasmic Granules metabolism, Drosophila melanogaster metabolism, Drosophila melanogaster genetics, RNA, Messenger metabolism, RNA, Messenger genetics
- Abstract
Most RNA-protein condensates are composed of heterogeneous immiscible phases. However, how this multiphase organization contributes to their biological functions remains largely unexplored. Drosophila germ granules, a class of RNA-protein condensates, are the site of mRNA storage and translational activation. Here, using super-resolution microscopy and single-molecule imaging approaches, we show that germ granules have a biphasic organization and that translation occurs in the outer phase and at the surface of the granules. The localization, directionality, and compaction of mRNAs within the granule depend on their translation status, translated mRNAs being enriched in the outer phase with their 5'end oriented towards the surface. Translation is strongly reduced when germ granule biphasic organization is lost. These findings reveal the intimate links between the architecture of RNA-protein condensates and the organization of their different functions, highlighting the functional compartmentalization of these condensates., (© 2024. The Author(s).)
- Published
- 2024
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20. The small compound Icerguastat reduces muscle defects in oculopharyngeal muscular dystrophy through the PERK pathway of the unfolded protein response.
- Author
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Naït-Saïdi R, Chartier A, Abgueguen E, Guédat P, and Simonelig M
- Subjects
- Animals, Muscle, Skeletal metabolism, Unfolded Protein Response, Cell Nucleus metabolism, Endoplasmic Reticulum Stress, Drosophila, Muscular Dystrophy, Oculopharyngeal genetics, Muscular Dystrophy, Oculopharyngeal metabolism, Muscular Dystrophy, Oculopharyngeal pathology
- Abstract
Oculopharyngeal muscular dystrophy (OPMD) is an autosomal dominant disease characterized by the progressive degeneration of specific muscles. OPMD is due to a mutation in the gene encoding poly(A) binding protein nuclear 1 (PABPN1) leading to a stretch of 11 to 18 alanines at N-terminus of the protein, instead of 10 alanines in the normal protein. This alanine tract extension induces the misfolding and aggregation of PABPN1 in muscle nuclei. Here, using Drosophila OPMD models, we show that the unfolded protein response (UPR) is activated in OPMD upon endoplasmic reticulum stress. Mutations in components of the PERK branch of the UPR reduce muscle degeneration and PABPN1 aggregation characteristic of the disease. We show that oral treatment of OPMD flies with Icerguastat (previously IFB-088), a Guanabenz acetate derivative that shows lower side effects, also decreases muscle degeneration and PABPN1 aggregation. Furthermore, the positive effect of Icerguastat depends on GADD34, a key component of the phosphatase complex in the PERK branch of the UPR. This study reveals a major contribution of the ER stress in OPMD pathogenesis and provides a proof-of-concept for Icerguastat interest in future pharmacological treatments of OPMD.
- Published
- 2023
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21. Emerging roles and functional mechanisms of PIWI-interacting RNAs.
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Wang X, Ramat A, Simonelig M, and Liu MF
- Subjects
- Animals, Mice, DNA Transposable Elements, Germ Cells metabolism, RNA, Small Interfering genetics, RNA, Small Interfering metabolism, Argonaute Proteins genetics, Argonaute Proteins metabolism, Piwi-Interacting RNA
- Abstract
PIWI-interacting RNAs (piRNAs) are a class of small non-coding RNAs that associate with proteins of the PIWI clade of the Argonaute family. First identified in animal germ line cells, piRNAs have essential roles in germ line development. The first function of PIWI-piRNA complexes to be described was the silencing of transposable elements, which is crucial for maintaining the integrity of the germ line genome. Later studies provided new insights into the functions of PIWI-piRNA complexes by demonstrating that they regulate protein-coding genes. Recent studies of piRNA biology, including in new model organisms such as golden hamsters, have deepened our understanding of both piRNA biogenesis and piRNA function. In this Review, we discuss the most recent advances in our understanding of piRNA biogenesis, the molecular mechanisms of piRNA function and the emerging roles of piRNAs in germ line development mainly in flies and mice, and in infertility, cancer and neurological diseases in humans., (© 2022. Springer Nature Limited.)
- Published
- 2023
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22. Publisher Correction: Emerging roles and functional mechanisms of PIWI- interacting RNAs.
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Wang X, Ramat A, Simonelig M, and Liu MF
- Published
- 2022
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23. Activating translation with phase separation.
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Ramat A and Simonelig M
- Subjects
- Animals, Male, Mice, Cytoplasmic Ribonucleoprotein Granules metabolism, Protein Biosynthesis genetics, Spermatogenesis genetics
- Abstract
Ribonucleoprotein granules allow activation of translation to complete mouse spermatogenesis.
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- 2022
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24. RNF219 regulates CCR4-NOT function in mRNA translation and deadenylation.
- Author
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Guénolé A, Velilla F, Chartier A, Rich A, Carvunis AR, Sardet C, Simonelig M, and Sobhian B
- Subjects
- Gene Expression Regulation, RNA Stability, RNA, Messenger genetics, RNA, Messenger metabolism, Protein Biosynthesis, Ribonucleases genetics, Ribonucleases metabolism
- Abstract
Post-transcriptional regulatory mechanisms play a role in many biological contexts through the control of mRNA degradation, translation and localization. Here, we show that the RING finger protein RNF219 co-purifies with the CCR4-NOT complex, the major mRNA deadenylase in eukaryotes, which mediates translational repression in both a deadenylase activity-dependent and -independent manner. Strikingly, RNF219 both inhibits the deadenylase activity of CCR4-NOT and enhances its capacity to repress translation of a target mRNA. We propose that the interaction of RNF219 with the CCR4-NOT complex directs the translational repressive activity of CCR4-NOT to a deadenylation-independent mechanism., (© 2022. The Author(s).)
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- 2022
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25. Activation of the ubiquitin-proteasome system contributes to oculopharyngeal muscular dystrophy through muscle atrophy.
- Author
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Ribot C, Soler C, Chartier A, Al Hayek S, Naït-Saïdi R, Barbezier N, Coux O, and Simonelig M
- Subjects
- Animals, Disease Models, Animal, Drosophila melanogaster, Gene Expression Regulation, Genetic Testing, Humans, Leupeptins pharmacology, Leupeptins therapeutic use, Muscular Atrophy drug therapy, Muscular Atrophy metabolism, Muscular Dystrophy, Oculopharyngeal drug therapy, Muscular Dystrophy, Oculopharyngeal genetics, Muscular Dystrophy, Oculopharyngeal metabolism, Mutation, Poly(A)-Binding Protein I chemistry, Proof of Concept Study, Protein Aggregates drug effects, Muscular Atrophy pathology, Muscular Dystrophy, Oculopharyngeal pathology, Poly(A)-Binding Protein I genetics, Proteasome Endopeptidase Complex metabolism, Ubiquitin metabolism
- Abstract
Oculopharyngeal muscular dystrophy (OPMD) is a late-onset disorder characterized by progressive weakness and degeneration of specific muscles. OPMD is due to extension of a polyalanine tract in poly(A) binding protein nuclear 1 (PABPN1). Aggregation of the mutant protein in muscle nuclei is a hallmark of the disease. Previous transcriptomic analyses revealed the consistent deregulation of the ubiquitin-proteasome system (UPS) in OPMD animal models and patients, suggesting a role of this deregulation in OPMD pathogenesis. Subsequent studies proposed that UPS contribution to OPMD involved PABPN1 aggregation. Here, we use a Drosophila model of OPMD to address the functional importance of UPS deregulation in OPMD. Through genome-wide and targeted genetic screens we identify a large number of UPS components that are involved in OPMD. Half dosage of UPS genes reduces OPMD muscle defects suggesting a pathological increase of UPS activity in the disease. Quantification of proteasome activity confirms stronger activity in OPMD muscles, associated with degradation of myofibrillar proteins. Importantly, improvement of muscle structure and function in the presence of UPS mutants does not correlate with the levels of PABPN1 aggregation, but is linked to decreased degradation of muscle proteins. Oral treatment with the proteasome inhibitor MG132 is beneficial to the OPMD Drosophila model, improving muscle function although PABPN1 aggregation is enhanced. This functional study reveals the importance of increased UPS activity that underlies muscle atrophy in OPMD. It also provides a proof-of-concept that inhibitors of proteasome activity might be an attractive pharmacological approach for OPMD., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: The authors declare that AC (2%) and MS (3%) are co-inventors of the patent “Proteasome inhibitors for treating a disorder related to an accumulation of a nondegraded abnormal protein or a cancer”, WO/2016/113357 that has been published on July 21, 2016.
- Published
- 2022
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26. Anti-prion Drugs Targeting the Protein Folding Activity of the Ribosome Reduce PABPN1 Aggregation.
- Author
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Bamia A, Sinane M, Naït-Saïdi R, Dhiab J, Keruzoré M, Nguyen PH, Bertho A, Soubigou F, Halliez S, Blondel M, Trollet C, Simonelig M, Friocourt G, Béringue V, Bihel F, and Voisset C
- Subjects
- Animals, Calcium Channel Blockers administration & dosage, Cell Line, Databases, Factual, Drosophila, Female, Mice, Mice, Transgenic, Organ Culture Techniques, Poly(A)-Binding Protein I antagonists & inhibitors, Poly(A)-Binding Protein I genetics, Prion Diseases drug therapy, Prion Diseases genetics, Prion Proteins antagonists & inhibitors, Prion Proteins genetics, Prion Proteins metabolism, Protein Aggregates physiology, Sheep, Drug Delivery Systems methods, Flunarizine administration & dosage, Poly(A)-Binding Protein I metabolism, Prion Diseases metabolism, Protein Aggregates drug effects, Protein Folding drug effects
- Abstract
Prion diseases are caused by the propagation of PrP
Sc , the pathological conformation of the PrPC prion protein. The molecular mechanisms underlying PrPSc propagation are still unsolved and no therapeutic solution is currently available. We thus sought to identify new anti-prion molecules and found that flunarizine inhibited PrPSc propagation in cell culture and significantly prolonged survival of prion-infected mice. Using an in silico therapeutic repositioning approach based on similarities with flunarizine chemical structure, we tested azelastine, duloxetine, ebastine, loperamide and metixene and showed that they all have an anti-prion activity. Like flunarizine, these marketed drugs reduced PrPSc propagation in cell culture and in mouse cerebellum organotypic slice culture, and inhibited the protein folding activity of the ribosome (PFAR). Strikingly, some of these drugs were also able to alleviate phenotypes due to PABPN1 nuclear aggregation in cell and Drosophila models of oculopharyngeal muscular dystrophy (OPMD). These data emphasize the therapeutic potential of anti-PFAR drugs for neurodegenerative and neuromuscular proteinopathies., (© 2021. The American Society for Experimental NeuroTherapeutics, Inc.)- Published
- 2021
- Full Text
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27. Functions of PIWI Proteins in Gene Regulation: New Arrows Added to the piRNA Quiver.
- Author
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Ramat A and Simonelig M
- Subjects
- Animals, DNA Transposable Elements genetics, Germ Cells metabolism, Humans, RNA Stability genetics, RNA, Messenger genetics, Transcriptional Activation genetics, Argonaute Proteins genetics, Gene Regulatory Networks genetics, RNA, Small Interfering genetics
- Abstract
Piwi-interacting RNAs (piRNAs) and PIWI proteins play key functions in a wide range of biological and developmental processes through the regulation of cellular mRNAs, in addition to their role in transposable element (TE) repression. Evolutionary studies indicate that these PIWI functions in mRNA regulatory programs, occurring in both germ and somatic cells, are ancestral. Recent advances have widely expanded our understanding of these functions of PIWI proteins, identifying new mechanisms of action and strengthening their importance through their conservation in distant species. In this review, we discuss the latest findings regarding piRNA/PIWI-dependent mRNA decay in germ cells and during the maternal-to-zygotic transition in embryos combined with new modes of action of PIWI proteins in mRNA stabilization and translational activation and piRNA-independent roles of PIWI proteins in cancer., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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28. The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm.
- Author
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Ramat A, Garcia-Silva MR, Jahan C, Naït-Saïdi R, Dufourt J, Garret C, Chartier A, Cremaschi J, Patel V, Decourcelle M, Bastide A, Juge F, and Simonelig M
- Subjects
- Animals, Argonaute Proteins metabolism, Cell Line, Germ Cells cytology, Germ Cells metabolism, RNA Stability, Drosophila Proteins metabolism, Drosophila melanogaster embryology, Eukaryotic Initiation Factor-3 metabolism, Peptide Initiation Factors metabolism, Poly(A)-Binding Proteins metabolism, RNA, Messenger metabolism, RNA, Small Interfering metabolism
- Abstract
Piwi-interacting RNAs (piRNAs) and PIWI proteins are essential in germ cells to repress transposons and regulate mRNAs. In Drosophila, piRNAs bound to the PIWI protein Aubergine (Aub) are transferred maternally to the embryo and regulate maternal mRNA stability through two opposite roles. They target mRNAs by incomplete base pairing, leading to their destabilization in the soma and stabilization in the germ plasm. Here, we report a function of Aub in translation. Aub is required for translational activation of nanos mRNA, a key determinant of the germ plasm. Aub physically interacts with the poly(A)-binding protein (PABP) and the translation initiation factor eIF3. Polysome gradient profiling reveals the role of Aub at the initiation step of translation. In the germ plasm, PABP and eIF3d assemble in foci that surround Aub-containing germ granules, and Aub acts with eIF3d to promote nanos translation. These results identify translational activation as a new mode of mRNA regulation by Aub, highlighting the versatility of PIWI proteins in mRNA regulation.
- Published
- 2020
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29. Pharmacological modulation of the ER stress response ameliorates oculopharyngeal muscular dystrophy.
- Author
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Malerba A, Roth F, Harish P, Dhiab J, Lu-Nguyen N, Cappellari O, Jarmin S, Mahoudeau A, Ythier V, Lainé J, Negroni E, Abgueguen E, Simonelig M, Guedat P, Mouly V, Butler-Browne G, Voisset C, Dickson G, and Trollet C
- Subjects
- Alternative Splicing drug effects, Alternative Splicing genetics, Animals, Disease Models, Animal, Endoplasmic Reticulum Stress drug effects, Fibrosis drug therapy, Fibrosis genetics, Fibrosis pathology, Humans, Mice, Muscular Dystrophy, Oculopharyngeal genetics, Muscular Dystrophy, Oculopharyngeal pathology, Phosphorylation drug effects, Protein Aggregates drug effects, Protein Aggregates genetics, Protein Folding, Unfolded Protein Response drug effects, Guanabenz pharmacology, Muscular Dystrophy, Oculopharyngeal drug therapy, Poly(A)-Binding Protein I genetics, X-Box Binding Protein 1 genetics
- Abstract
Oculopharyngeal muscular dystrophy (OPMD) is a rare late onset genetic disease leading to ptosis, dysphagia and proximal limb muscles at later stages. A short abnormal (GCN) triplet expansion in the polyA-binding protein nuclear 1 (PABPN1) gene leads to PABPN1-containing aggregates in the muscles of OPMD patients. Here we demonstrate that treating mice with guanabenz acetate (GA), an FDA-approved antihypertensive drug, reduces the size and number of nuclear aggregates, improves muscle force, protects myofibers from the pathology-derived turnover and decreases fibrosis. GA targets various cell processes, including the unfolded protein response (UPR), which acts to attenuate endoplasmic reticulum (ER) stress. We demonstrate that GA increases both the phosphorylation of the eukaryotic translation initiation factor 2α subunit and the splicing of Xbp1, key components of the UPR. Altogether these data show that modulation of protein folding regulation is beneficial for OPMD and promote the further development of GA or its derivatives for treatment of OPMD in humans. Furthermore, they support the recent evidences that treating ER stress could be therapeutically relevant in other more common proteinopathies., (© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2019
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30. piRNAs and PIWI proteins: regulators of gene expression in development and stem cells.
- Author
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Rojas-Ríos P and Simonelig M
- Subjects
- Animals, Body Patterning genetics, DNA Transposable Elements genetics, Mice, RNA, Messenger genetics, Spermatogenesis genetics, Argonaute Proteins genetics, Caenorhabditis elegans embryology, Drosophila melanogaster embryology, Gene Expression Regulation, Developmental genetics, RNA, Small Interfering genetics, Stem Cells metabolism
- Abstract
PIWI proteins and Piwi-interacting RNAs (piRNAs) have established and conserved roles in repressing transposable elements (TEs) in the germline of animals. However, in several biological contexts, a large proportion of piRNAs are not related to TE sequences and, accordingly, functions for piRNAs and PIWI proteins that are independent of TE regulation have been identified. This aspect of piRNA biology is expanding rapidly. Indeed, recent reports have revealed the role of piRNAs in the regulation of endogenous gene expression programs in germ cells, as well as in somatic tissues, challenging dogma in the piRNA field. In this Review, we focus on recent data addressing the biological and developmental functions of piRNAs, highlighting their roles in embryonic patterning, germ cell specification, stem cell biology, neuronal activity and metabolism., Competing Interests: Competing interestsThe authors declare no competing or financial interests., (© 2018. Published by The Company of Biologists Ltd.)
- Published
- 2018
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31. Dicer-2 promotes mRNA activation through cytoplasmic polyadenylation.
- Author
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Coll O, Guitart T, Villalba A, Papin C, Simonelig M, and Gebauer F
- Subjects
- Animals, Drosophila Proteins genetics, Drosophila melanogaster embryology, Polynucleotide Adenylyltransferase genetics, Protein Biosynthesis genetics, RNA 3' Polyadenylation Signals genetics, RNA Helicases genetics, RNA, Messenger genetics, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Ribonuclease III genetics, Xenopus laevis embryology, Xenopus laevis genetics, mRNA Cleavage and Polyadenylation Factors genetics, Drosophila Proteins chemistry, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Polyadenylation physiology, Polynucleotide Adenylyltransferase metabolism, RNA Helicases metabolism, RNA, Messenger chemistry, Ribonuclease III metabolism, Toll-Like Receptors chemistry
- Abstract
Cytoplasmic polyadenylation is a widespread mechanism to regulate mRNA translation. In vertebrates, this process requires two sequence elements in target 3' UTRs: the U-rich cytoplasmic polyadenylation element and the AAUAAA hexanucleotide. In Drosophila melanogaster , cytoplasmic polyadenylation of Toll mRNA occurs independently of these canonical elements and requires a machinery that remains to be characterized. Here we identify Dicer-2 as a component of this machinery. Dicer-2, a factor previously involved in RNA interference (RNAi), interacts with the cytoplasmic poly(A) polymerase Wispy. Depletion of Dicer-2 from polyadenylation-competent embryo extracts and analysis of wispy mutants indicate that both factors are necessary for polyadenylation and translation of Toll mRNA. We further identify r2d2 mRNA, encoding a Dicer-2 partner in RNAi, as a Dicer-2 polyadenylation target. Our results uncover a novel function of Dicer-2 in activation of mRNA translation through cytoplasmic polyadenylation., (© 2018 Coll et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.)
- Published
- 2018
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32. iCLIP of the PIWI Protein Aubergine in Drosophila Embryos.
- Author
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Barckmann B, Dufourt J, and Simonelig M
- Subjects
- Animals, Cross-Linking Reagents chemistry, DNA Transposable Elements genetics, Drosophila Proteins genetics, Drosophila Proteins immunology, Germ Cells metabolism, High-Throughput Nucleotide Sequencing methods, Nucleotides metabolism, Peptide Initiation Factors genetics, Peptide Initiation Factors immunology, RNA Stability, RNA, Messenger genetics, RNA, Small Interfering genetics, RNA, Small Interfering metabolism, Sequence Analysis, RNA methods, Ultraviolet Rays, Drosophila Proteins metabolism, Drosophila melanogaster physiology, Embryo, Nonmammalian metabolism, Immunoprecipitation methods, Peptide Initiation Factors metabolism, RNA, Messenger metabolism
- Abstract
Piwi-interacting RNAs (piRNAs) are a class of small noncoding RNAs bound to specific Argonaute proteins, the PIWI proteins. piRNAs target mRNAs by complementarity to silence them; they play an important role in the repression of transposable elements in the germ line of many species. piRNAs and PIWI proteins are also involved in diverse biological processes through their role in the regulation of cellular mRNAs. In the Drosophila embryo, they contribute to the maternal mRNA decay occurring during the maternal-to-zygotic transition. CLIP (UV cross-linking and immunoprecipitation) techniques have been used to identify target mRNAs of Argonaute proteins. Here we describe the iCLIP (individual-nucleotide resolution CLIP) protocol that we have adapted for the PIWI protein Aubergine in Drosophila embryos.
- Published
- 2018
- Full Text
- View/download PDF
33. piRNAs and Aubergine cooperate with Wispy poly(A) polymerase to stabilize mRNAs in the germ plasm.
- Author
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Dufourt J, Bontonou G, Chartier A, Jahan C, Meunier AC, Pierson S, Harrison PF, Papin C, Beilharz TH, and Simonelig M
- Subjects
- Animals, Animals, Genetically Modified, Argonaute Proteins genetics, Argonaute Proteins metabolism, Body Patterning genetics, Body Patterning physiology, Drosophila melanogaster embryology, Embryonic Germ Cells metabolism, Female, In Situ Hybridization, Fluorescence, Male, Methylation, RNA Stability, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Drosophila melanogaster metabolism, Peptide Initiation Factors genetics, Peptide Initiation Factors metabolism, Polynucleotide Adenylyltransferase genetics, Polynucleotide Adenylyltransferase metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, RNA, Small Interfering genetics, RNA, Small Interfering metabolism
- Abstract
Piwi-interacting RNAs (piRNAs) and PIWI proteins play a crucial role in germ cells by repressing transposable elements and regulating gene expression. In Drosophila, maternal piRNAs are loaded into the embryo mostly bound to the PIWI protein Aubergine (Aub). Aub targets maternal mRNAs through incomplete base-pairing with piRNAs and can induce their destabilization in the somatic part of the embryo. Paradoxically, these Aub-dependent unstable mRNAs encode germ cell determinants that are selectively stabilized in the germ plasm. Here we show that piRNAs and Aub actively protect germ cell mRNAs in the germ plasm. Aub directly interacts with the germline-specific poly(A) polymerase Wispy, thus leading to mRNA polyadenylation and stabilization in the germ plasm. These results reveal a role for piRNAs in mRNA stabilization and identify Aub as an interactor of Wispy for mRNA polyadenylation. They further highlight the role of Aub and piRNAs in embryonic patterning through two opposite functions.
- Published
- 2017
- Full Text
- View/download PDF
34. Aubergine and piRNAs promote germline stem cell self-renewal by repressing the proto-oncogene Cbl .
- Author
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Rojas-Ríos P, Chartier A, Pierson S, and Simonelig M
- Subjects
- Animals, Argonaute Proteins genetics, Argonaute Proteins metabolism, Base Sequence, Carrier Proteins genetics, Carrier Proteins metabolism, Cell Differentiation, Cell Lineage genetics, Drosophila Proteins metabolism, Drosophila melanogaster growth & development, Drosophila melanogaster metabolism, Embryo, Nonmammalian, Gene Expression Regulation, Developmental, Germ Cells growth & development, Peptide Initiation Factors metabolism, Proto-Oncogene Mas, Proto-Oncogene Proteins c-cbl metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, RNA, Small Interfering metabolism, RNA-Binding Proteins, Ribonucleases genetics, Ribonucleases metabolism, Stem Cells cytology, Drosophila Proteins genetics, Drosophila melanogaster genetics, Germ Cells metabolism, Peptide Initiation Factors genetics, Proto-Oncogene Proteins c-cbl genetics, RNA, Small Interfering genetics, Stem Cells metabolism
- Abstract
PIWI proteins play essential roles in germ cells and stem cell lineages. In Drosophila , Piwi is required in somatic niche cells and germline stem cells (GSCs) to support GSC self-renewal and differentiation. Whether and how other PIWI proteins are involved in GSC biology remains unknown. Here, we show that Aubergine (Aub), another PIWI protein, is intrinsically required in GSCs for their self-renewal and differentiation. Aub needs to be loaded with piRNAs to control GSC self-renewal and acts through direct mRNA regulation. We identify the Cbl proto-oncogene, a regulator of mammalian hematopoietic stem cells, as a novel GSC differentiation factor. Aub stimulates GSC self-renewal by repressing Cbl mRNA translation and does so in part through recruitment of the CCR4-NOT complex. This study reveals the role of piRNAs and PIWI proteins in controlling stem cell homeostasis via translational repression and highlights piRNAs as major post-transcriptional regulators in key developmental decisions., (© 2017 The Authors. Published under the terms of the CC BY 4.0 license.)
- Published
- 2017
- Full Text
- View/download PDF
35. Translational repression of the Drosophila nanos mRNA involves the RNA helicase Belle and RNA coating by Me31B and Trailer hitch.
- Author
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Götze M, Dufourt J, Ihling C, Rammelt C, Pierson S, Sambrani N, Temme C, Sinz A, Simonelig M, and Wahle E
- Subjects
- Animals, DEAD-box RNA Helicases genetics, Drosophila melanogaster embryology, Drosophila melanogaster genetics, Embryo, Nonmammalian, Gene Expression Regulation, Multiprotein Complexes genetics, Multiprotein Complexes metabolism, Protein Biosynthesis, RNA Helicases genetics, RNA, Messenger chemistry, RNA, Messenger genetics, RNA, Messenger metabolism, RNA-Binding Proteins metabolism, Repressor Proteins genetics, Repressor Proteins metabolism, Ribonucleoproteins genetics, DEAD-box RNA Helicases metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, RNA Helicases metabolism, RNA-Binding Proteins genetics, Ribonucleoproteins metabolism
- Abstract
Translational repression of maternal mRNAs is an essential regulatory mechanism during early embryonic development. Repression of the Drosophila nanos mRNA, required for the formation of the anterior-posterior body axis, depends on the protein Smaug binding to two Smaug recognition elements (SREs) in the nanos 3' UTR. In a comprehensive mass spectrometric analysis of the SRE-dependent repressor complex, we identified Smaug, Cup, Me31B, Trailer hitch, eIF4E, and PABPC, in agreement with earlier data. As a novel component, the RNA-dependent ATPase Belle (DDX3) was found, and its involvement in deadenylation and repression of nanos was confirmed in vivo. Smaug, Cup, and Belle bound stoichiometrically to the SREs, independently of RNA length. Binding of Me31B and Tral was also SRE-dependent, but their amounts were proportional to the length of the RNA and equimolar to each other. We suggest that "coating" of the RNA by a Me31B•Tral complex may be at the core of repression., (© 2017 Götze et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.)
- Published
- 2017
- Full Text
- View/download PDF
36. Measurement of mRNA Poly(A) Tail Lengths in Drosophila Female Germ Cells and Germ-Line Stem Cells.
- Author
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Chartier A, Joly W, and Simonelig M
- Subjects
- Animals, Female, Gene Expression Regulation, Ovary cytology, Polyadenylation, Stem Cell Niche, Stem Cells chemistry, Stem Cells cytology, Drosophila genetics, Ovary chemistry, Poly A analysis, RNA, Messenger chemistry
- Abstract
mRNA regulation by poly(A) tail length variations plays an important role in many developmental processes. Recent advances have shown that, in particular, deadenylation (the shortening of mRNA poly(A) tails) is essential for germ-line stem cell biology in the Drosophila ovary. Therefore, a rapid and accurate method to analyze poly(A) tail lengths of specific mRNAs in this tissue is valuable. Several methods of poly(A) test (PAT) assays have been reported to measure mRNA poly(A) tail lengths in vivo. Here, we describe two of these methods (PAT and ePAT) that we have adapted for Drosophila ovarian germ cells and germ-line stem cells.
- Published
- 2017
- Full Text
- View/download PDF
37. Translational Control of Autophagy by Orb in the Drosophila Germline.
- Author
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Rojas-Ríos P, Chartier A, Pierson S, Séverac D, Dantec C, Busseau I, and Simonelig M
- Subjects
- Animals, Autophagy-Related Protein-1 Homolog, Cell Cycle, Cell Death, Drosophila metabolism, Female, Germ Cells metabolism, Homeostasis, Immunoprecipitation, Mutation, Oocytes metabolism, Oogenesis, Ovary metabolism, Protein Biosynthesis, Protein Serine-Threonine Kinases metabolism, RNA, Messenger metabolism, RNA-Binding Proteins genetics, Ribonucleases metabolism, Autophagy genetics, Drosophila genetics, Drosophila Proteins metabolism, Gene Expression Regulation, Developmental, RNA-Binding Proteins metabolism
- Abstract
Drosophila Orb, the homolog of vertebrate CPEB, is a key translational regulator involved in oocyte polarity and maturation through poly(A) tail elongation of specific mRNAs. orb also has an essential function during early oogenesis that has not been addressed at the molecular level. Here, we show that orb prevents cell death during early oogenesis, thus allowing oogenesis to progress. It does so through the repression of autophagy by directly repressing, together with the CCR4 deadenylase, the translation of Autophagy-specific gene 12 (Atg12) mRNA. Autophagy and cell death observed in orb mutant ovaries are reduced by decreasing Atg12 or other Atg mRNA levels. These results reveal a role of Orb in translational repression and identify autophagy as an essential pathway regulated by Orb during early oogenesis. Importantly, they also establish translational regulation as a major mode of control of autophagy, a key process in cell homeostasis in response to environmental cues., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
38. Aubergine iCLIP Reveals piRNA-Dependent Decay of mRNAs Involved in Germ Cell Development in the Early Embryo.
- Author
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Barckmann B, Pierson S, Dufourt J, Papin C, Armenise C, Port F, Grentzinger T, Chambeyron S, Baronian G, Desvignes JP, Curk T, and Simonelig M
- Subjects
- Animals, Drosophila embryology, Drosophila genetics, Drosophila metabolism, Drosophila Proteins metabolism, Germ Cells cytology, Peptide Initiation Factors metabolism, RNA Processing, Post-Transcriptional, RNA, Messenger genetics, RNA, Messenger metabolism, RNA, Small Interfering metabolism, Drosophila Proteins genetics, Gene Expression Regulation, Developmental, Germ Cells metabolism, Peptide Initiation Factors genetics, RNA Stability, RNA, Small Interfering genetics
- Abstract
The Piwi-interacting RNA (piRNA) pathway plays an essential role in the repression of transposons in the germline. Other functions of piRNAs such as post-transcriptional regulation of mRNAs are now emerging. Here, we perform iCLIP with the PIWI protein Aubergine (Aub) and identify hundreds of maternal mRNAs interacting with Aub in the early Drosophila embryo. Gene expression profiling reveals that a proportion of these mRNAs undergo Aub-dependent destabilization during the maternal-to-zygotic transition. Strikingly, Aub-dependent unstable mRNAs encode germ cell determinants. iCLIP with an Aub mutant that is unable to bind piRNAs confirms piRNA-dependent binding of Aub to mRNAs. Base pairing between piRNAs and mRNAs can induce mRNA cleavage and decay that are essential for embryonic development. These results suggest general regulation of maternal mRNAs by Aub and piRNAs, which plays a key developmental role in the embryo through decay and localization of mRNAs encoding germ cell determinants., (Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
39. Mitochondrial dysfunction reveals the role of mRNA poly(A) tail regulation in oculopharyngeal muscular dystrophy pathogenesis.
- Author
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Chartier A, Klein P, Pierson S, Barbezier N, Gidaro T, Casas F, Carberry S, Dowling P, Maynadier L, Bellec M, Oloko M, Jardel C, Moritz B, Dickson G, Mouly V, Ohlendieck K, Butler-Browne G, Trollet C, and Simonelig M
- Subjects
- Animals, Disease Models, Animal, Drosophila melanogaster genetics, Gene Expression Regulation, Humans, Mice, Mitochondrial Proteins biosynthesis, Muscle, Skeletal pathology, Muscular Dystrophy, Oculopharyngeal pathology, Poly(A)-Binding Protein I biosynthesis, Polyadenylation genetics, RNA, Messenger biosynthesis, Mitochondrial Proteins genetics, Muscular Dystrophy, Oculopharyngeal genetics, Poly(A)-Binding Protein I genetics, RNA, Messenger genetics
- Abstract
Oculopharyngeal muscular dystrophy (OPMD), a late-onset disorder characterized by progressive degeneration of specific muscles, results from the extension of a polyalanine tract in poly(A) binding protein nuclear 1 (PABPN1). While the roles of PABPN1 in nuclear polyadenylation and regulation of alternative poly(A) site choice are established, the molecular mechanisms behind OPMD remain undetermined. Here, we show, using Drosophila and mouse models, that OPMD pathogenesis depends on affected poly(A) tail lengths of specific mRNAs. We identify a set of mRNAs encoding mitochondrial proteins that are down-regulated starting at the earliest stages of OPMD progression. The down-regulation of these mRNAs correlates with their shortened poly(A) tails and partial rescue of their levels when deadenylation is genetically reduced improves muscle function. Genetic analysis of candidate genes encoding RNA binding proteins using the Drosophila OPMD model uncovers a potential role of a number of them. We focus on the deadenylation regulator Smaug and show that it is expressed in adult muscles and specifically binds to the down-regulated mRNAs. In addition, the first step of the cleavage and polyadenylation reaction, mRNA cleavage, is affected in muscles expressing alanine-expanded PABPN1. We propose that impaired cleavage during nuclear cleavage/polyadenylation is an early defect in OPMD. This defect followed by active deadenylation of specific mRNAs, involving Smaug and the CCR4-NOT deadenylation complex, leads to their destabilization and mitochondrial dysfunction. These results broaden our understanding of the role of mRNA regulation in pathologies and might help to understand the molecular mechanisms underlying neurodegenerative disorders that involve mitochondrial dysfunction.
- Published
- 2015
- Full Text
- View/download PDF
40. piRNAs, master regulators of gene expression.
- Author
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Simonelig M
- Subjects
- Animals, Male, RNA, Messenger metabolism, RNA, Small Interfering metabolism, Spermatogenesis
- Abstract
Piwi-interacting RNAs (piRNAs) have a major function in the repression of transposable elements in the germline; in addition, they have been proposed to regulate gene expression. A recent study in Cell Research reveals a general role for piRNAs in the massive mRNA decay during mouse spermiogenesis, reinforcing this emerging function of piRNAs.
- Published
- 2014
- Full Text
- View/download PDF
41. Deadenylation of mRNA by the CCR4-NOT complex in Drosophila: molecular and developmental aspects.
- Author
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Temme C, Simonelig M, and Wahle E
- Abstract
Controlled shortening of the poly(A) tail of mRNAs is the first step in eukaryotic mRNA decay and can also be used for translational inactivation of mRNAs. The CCR4-NOT complex is the most important among a small number of deadenylases, enzymes catalyzing poly(A) tail shortening. Rates of poly(A) shortening differ between mRNAs as the CCR4-NOT complex is recruited to specific mRNAs by means of either sequence-specific RNA binding proteins or miRNAs. This review summarizes our current knowledge concerning the subunit composition and deadenylation activity of the Drosophila CCR4-NOT complex and the mechanisms by which the complex is recruited to particular mRNAs. We discuss genetic data implicating the complex in the regulation of specific mRNAs, in particular in the context of development.
- Published
- 2014
- Full Text
- View/download PDF
42. The CCR4 deadenylase acts with Nanos and Pumilio in the fine-tuning of Mei-P26 expression to promote germline stem cell self-renewal.
- Author
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Joly W, Chartier A, Rojas-Rios P, Busseau I, and Simonelig M
- Subjects
- Animals, Cell Lineage, Cell Proliferation, Drosophila embryology, Drosophila genetics, Drosophila Proteins genetics, Female, Oogenesis, Ovum cytology, Ovum physiology, RNA, Messenger genetics, RNA, Messenger metabolism, RNA-Binding Proteins genetics, Ribonucleases genetics, Stem Cells cytology, Stem Cells physiology, Drosophila metabolism, Drosophila Proteins metabolism, Ovum metabolism, RNA-Binding Proteins metabolism, Ribonucleases metabolism, Stem Cells metabolism
- Abstract
Translational regulation plays an essential role in Drosophila ovarian germline stem cell (GSC) biology. GSC self-renewal requires two translational repressors, Nanos (Nos) and Pumilio (Pum), which repress the expression of differentiation factors in the stem cells. The molecular mechanisms underlying this translational repression remain unknown. Here, we show that the CCR4 deadenylase is required for GSC self-renewal and that Nos and Pum act through its recruitment onto specific mRNAs. We identify mei-P26 mRNA as a direct and major target of Nos/Pum/CCR4 translational repression in the GSCs. mei-P26 encodes a protein of the Trim-NHL tumor suppressor family that has conserved functions in stem cell lineages. We show that fine-tuning Mei-P26 expression by CCR4 plays a key role in GSC self-renewal. These results identify the molecular mechanism of Nos/Pum function in GSC self-renewal and reveal the role of CCR4-NOT-mediated deadenylation in regulating the balance between GSC self-renewal and differentiation.
- Published
- 2013
- Full Text
- View/download PDF
43. Control of maternal mRNA stability in germ cells and early embryos.
- Author
-
Barckmann B and Simonelig M
- Subjects
- Animals, Drosophila genetics, Drosophila growth & development, Gene Expression Regulation, Developmental, Germ Cells cytology, Germ Cells growth & development, Humans, Oogenesis genetics, RNA-Binding Proteins genetics, Transcription, Genetic, Zebrafish genetics, Zebrafish growth & development, Embryonic Development genetics, MicroRNAs genetics, RNA Stability genetics, RNA, Messenger, Stored genetics
- Abstract
mRNA regulation is essential in germ cells and early embryos. In particular, late oogenesis and early embryogenesis occur in the absence of transcription and rely on maternal mRNAs stored in oocytes. These maternal mRNAs subsequently undergo a general decay in embryos during the maternal-to-zygotic transition in which the control of development switches from the maternal to the zygotic genome. Regulation of mRNA stability thus plays a key role during these early stages of development and is tightly interconnected with translational regulation and mRNA localization. A common mechanism in these three types of regulation implicates variations in mRNA poly(A) tail length. Recent advances in the control of mRNA stability include the widespread and essential role of regulated deadenylation in early developmental processes, as well as the mechanisms regulating mRNA stability which involve RNA binding proteins, microRNAs and interplay between the two. Also emerging are the roles that other classes of small non-coding RNAs, endo-siRNAs and piRNAs play in the control of mRNA decay, including connections between the regulation of transposable elements and cellular mRNA regulation through the piRNA pathway. This article is part of a Special Issue entitled: RNA Decay mechanisms., (Copyright © 2013 Elsevier B.V. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
44. Animal models in therapeutic drug discovery for oculopharyngeal muscular dystrophy.
- Author
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Chartier A and Simonelig M
- Subjects
- Animals, Humans, Disease Models, Animal, Drug Discovery, Muscular Dystrophy, Oculopharyngeal drug therapy
- Abstract
Oculopharyngeal muscular dystrophy (OPMD) is a late onset disease which affects specific muscles. No pharmacological treatments are currently available for OPMD. In recent years, genetically tractable models of OPMD – Drosophila and Caenorhabditis elegans – have been generated. Although these models have not yet been used for large-scale primary drug screening, they have been very useful in candidate approaches for the identification of potential therapeutic compounds for OPMD. In this brief review, we summarize the data that validated active molecules for OPMD in animal models including Drosophila, C. elegans and mouse.
- Published
- 2013
- Full Text
- View/download PDF
45. PABPN1 shuts down alternative poly(A) sites.
- Author
-
Simonelig M
- Subjects
- 3' Untranslated Regions, Animals, Cell Line, Drosophila, Drosophila Proteins genetics, Drosophila Proteins metabolism, Humans, Mutation, Poly(A)-Binding Protein I genetics, RNA, Messenger metabolism, Schizosaccharomyces metabolism, Schizosaccharomyces pombe Proteins genetics, Schizosaccharomyces pombe Proteins metabolism, Poly A metabolism, Poly(A)-Binding Protein I metabolism
- Abstract
Although overlooked for many years, alternative cleavage and polyadenylation (APA) is now emerging as a major mechanism of gene regulation. A recent study identifies poly(A)-binding protein nuclear 1 (PABPN1), a general factor of polyadenylation, as a suppressor of alternative poly(A) sites.
- Published
- 2012
- Full Text
- View/download PDF
46. Maternal-to-zygotic transition: soma versus germline.
- Author
-
Simonelig M
- Subjects
- Animals, Embryonic Development genetics, Embryonic Stem Cells metabolism, Female, Gene Expression Regulation, Developmental, Germ Cells growth & development, Proteome genetics, Transcriptome genetics, Drosophila melanogaster embryology, Drosophila melanogaster genetics, Germ Cells metabolism, RNA, Messenger, Stored genetics, RNA, Messenger, Stored metabolism, Zygote metabolism
- Abstract
A new study in Drosophila reports the genome-wide analysis of the maternal-to-zygotic transition in primordial germ cells, the progenitors of germline stem cells.
- Published
- 2012
- Full Text
- View/download PDF
47. [Embryonic development is controlled by small non-coding RNAs derived from transposable elements].
- Author
-
Papin C and Simonelig M
- Subjects
- Animals, DNA Transposable Elements physiology, Drosophila embryology, Drosophila genetics, Drosophila physiology, Embryo, Nonmammalian, Gene Expression Regulation, Developmental, Humans, Models, Biological, Polyadenylation physiology, RNA Stability genetics, RNA Stability physiology, RNA, Small Untranslated genetics, RNA-Binding Proteins genetics, RNA-Binding Proteins physiology, DNA Transposable Elements genetics, Embryonic Development genetics, RNA, Small Untranslated physiology
- Published
- 2011
- Full Text
- View/download PDF
48. Developmental functions of piRNAs and transposable elements: a Drosophila point-of-view.
- Author
-
Simonelig M
- Subjects
- Animals, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, Gene Silencing, RNA, Small Interfering metabolism, DNA Transposable Elements genetics, Drosophila melanogaster genetics, Gene Expression Regulation, Developmental, RNA, Small Interfering genetics
- Abstract
The primary function of the piRNA pathway is to repress the expression and transposition of transposable elements. However, the piRNA pathway has additional biological and developmental functions. These functions are either a consequence of transposon regulation, or they result from direct roles of transposable elements in chromosome structure and gene regulation through piRNAs. Recent data have extended the functions of transposable elements in gene regulation, revealing a trans-acting role of transposable element piRNAs in the control of gene expression. Over the last few years, extensive studies on the piRNA pathway have rapidly increased our understanding of the relationships between transposable elements and the host genome, and of the essential role of transposable elements in biological and developmental processes.
- Published
- 2011
- Full Text
- View/download PDF
49. Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients.
- Author
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Anvar SY, 't Hoen PA, Venema A, van der Sluijs B, van Engelen B, Snoeck M, Vissing J, Trollet C, Dickson G, Chartier A, Simonelig M, van Ommen GJ, van der Maarel SM, and Raz V
- Abstract
Oculopharyngeal muscular dystrophy (OPMD) is a late-onset progressive muscle disorder caused by a poly-alanine expansion mutation in the Poly(A) Binding Protein Nuclear 1 (PABPN1). The molecular mechanisms that regulate disease onset and progression are largely unknown. In order to identify molecular pathways that are consistently associated with OPMD, we performed an integrated high-throughput transcriptome study in affected muscles of OPMD animal models and patients. The ubiquitin-proteasome system (UPS) was found to be the most consistently and significantly OPMD-deregulated pathway across species. We could correlate the association of the UPS OPMD-deregulated genes with stages of disease progression. The expression trend of a subset of these genes is age-associated and therefore, marks the late onset of the disease, and a second group with expression trends relating to disease-progression. We demonstrate a correlation between expression trends and entrapment into PABPN1 insoluble aggregates of OPMD-deregulated E3 ligases. We also show that manipulations of proteasome and immunoproteasome activity specifically affect the accumulation and aggregation of mutant PABPN1. We suggest that the natural decrease in proteasome expression and its activity during muscle aging contributes to the onset of the disease.
- Published
- 2011
- Full Text
- View/download PDF
50. Antiprion drugs 6-aminophenanthridine and guanabenz reduce PABPN1 toxicity and aggregation in oculopharyngeal muscular dystrophy.
- Author
-
Barbezier N, Chartier A, Bidet Y, Buttstedt A, Voisset C, Galons H, Blondel M, Schwarz E, and Simonelig M
- Subjects
- Animals, Drosophila growth & development, Drosophila metabolism, Larva metabolism, Muscular Dystrophy, Oculopharyngeal drug therapy, Phenotype, Prion Diseases drug therapy, Protein Folding, RNA, Ribosomal metabolism, Guanabenz therapeutic use, Muscular Dystrophy, Oculopharyngeal metabolism, Phenanthridines therapeutic use, Poly(A)-Binding Protein II metabolism
- Abstract
Oculopharyngeal muscular dystrophy (OPMD) is an adult-onset syndrome characterized by progressive degeneration of specific muscles. OPMD is caused by extension of a polyalanine tract in poly(A) binding protein nuclear 1 (PABPN1). Insoluble nuclear inclusions form in diseased muscles. We have generated a Drosophila model of OPMD that recapitulates the features of the disorder. Here, we show that the antiprion drugs 6-aminophenanthridine (6AP) and guanabenz acetate (GA), which prevent formation of amyloid fibers by prion proteins in cell models, alleviate OPMD phenotypes in Drosophila, including muscle degeneration and nuclear inclusion formation. The large ribosomal RNA and its activity in protein folding were recently identified as a specific cellular target of 6AP and GA. We show that deletions of the ribosomal DNA locus reduce OPMD phenotypes and act synergistically with sub-effective doses of 6AP. In a complementary approach, we demonstrate that ribosomal RNA accelerates in vitro fibril formation of PABPN1 N-terminal domain. These results reveal the conserved role of ribosomal RNA in different protein aggregation disorders and identify 6AP and GA as general anti-aggregation molecules., (Copyright © 2011 EMBO Molecular Medicine.)
- Published
- 2011
- Full Text
- View/download PDF
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